0.013500
0.000000
0.000000
0.000000
0.013500
0.000000
0.000000
0.000000
0.006576
0.000000
0.000000
0.000000
Gavira, J.A.
Ruiz-Martinez, C.R.
Nieves-Marrero, C.A.
Estremera-Andujar, R.A.
Lopez-Garriga, J.
Garcia-Ruiz, J.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
74.073
74.073
152.069
C2 H4 O
44.053
ACETYL GROUP
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C34 H32 Fe N4 O4
616.487
PROTOPORPHYRIN IX CONTAINING FE
HEME
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
O2
31.999
OXYGEN MOLECULE
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
C
N
2
N
O
N
3
N
C
N
4
N
H
N
5
N
H
N
6
N
H
N
7
N
H
N
8
N
N
N
9
S
C
N
10
N
C
N
11
N
O
N
12
N
C
N
13
N
O
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
N
N
22
S
C
N
23
N
C
N
24
N
O
N
25
N
C
N
26
N
C
N
27
N
C
N
28
N
N
N
29
N
C
N
30
N
N
N
31
N
N
N
32
N
O
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
N
N
49
S
C
N
50
N
C
N
51
N
O
N
52
N
C
N
53
N
C
N
54
N
O
N
55
N
N
N
56
N
O
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
N
N
66
S
C
N
67
N
C
N
68
N
O
N
69
N
C
N
70
N
C
N
71
N
O
N
72
N
O
N
73
N
O
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
N
N
82
R
C
N
83
N
C
N
84
N
O
N
85
N
C
N
86
N
S
N
87
N
O
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
C
N
102
N
O
N
103
N
N
N
104
N
O
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
N
N
116
S
C
N
117
N
C
N
118
N
O
N
119
N
C
N
120
N
C
N
121
N
C
N
122
N
O
N
123
N
O
N
124
N
O
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
N
N
135
N
C
N
136
N
C
N
137
N
O
N
138
N
O
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
C
N
145
N
O
N
146
N
C
N
147
N
O
N
148
N
C
N
149
N
O
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
C
N
159
N
C
N
160
N
C
N
161
N
C
Y
162
N
C
Y
163
N
C
Y
164
N
C
Y
165
N
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
O
N
171
N
O
N
172
N
C
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
C
N
178
N
C
Y
179
N
C
Y
180
N
C
Y
181
N
C
Y
182
N
C
N
183
N
C
N
184
N
C
N
185
N
C
N
186
N
C
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
C
N
193
N
C
N
194
N
O
N
195
N
O
Y
196
N
N
N
197
N
N
Y
198
N
N
N
199
N
N
N
200
N
FE
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
N
N
234
S
C
N
235
N
C
N
236
N
O
N
237
N
C
Y
238
N
C
Y
239
N
N
Y
240
N
C
Y
241
N
C
Y
242
N
N
N
243
N
O
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
O
N
255
N
H
N
256
N
H
N
257
N
N
N
258
S
C
N
259
N
C
N
260
N
O
N
261
S
C
N
262
N
C
N
263
N
C
N
264
N
C
N
265
N
O
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
N
N
280
S
C
N
281
N
C
N
282
N
O
N
283
N
C
N
284
N
C
N
285
N
C
N
286
N
C
N
287
N
O
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
N
C
N
306
N
C
N
307
N
C
N
308
N
C
N
309
N
N
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
N
331
N
C
N
332
N
S
N
333
N
C
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
O
N
347
N
O
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
N
N
372
S
C
N
373
N
C
N
374
N
O
N
375
N
C
N
376
N
C
N
377
N
C
N
378
N
O
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
N
N
389
S
C
N
390
N
C
N
391
N
O
N
392
N
C
N
393
N
O
N
394
N
O
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
N
N
403
S
C
N
404
N
C
N
405
N
O
N
406
R
C
N
407
N
O
N
408
N
C
N
409
N
O
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
N
N
420
S
C
N
421
N
C
N
422
N
O
N
423
N
C
Y
424
N
C
Y
425
N
C
Y
426
N
C
Y
427
N
N
Y
428
N
C
Y
429
N
C
Y
430
N
C
Y
431
N
C
Y
432
N
C
N
433
N
O
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
N
N
447
S
C
N
448
N
C
N
449
N
O
N
450
N
C
Y
451
N
C
Y
452
N
C
Y
453
N
C
Y
454
N
C
Y
455
N
C
Y
456
N
C
N
457
N
O
N
458
N
O
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
N
N
471
S
C
N
472
N
C
N
473
N
O
N
474
N
C
N
475
N
C
N
476
N
C
N
477
N
O
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
doub
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
doub
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
doub
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
doub
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
doub
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
doub
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
doub
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
doub
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
doub
N
156
N
sing
N
157
N
doub
N
158
N
sing
N
159
N
sing
Y
160
N
doub
Y
161
N
sing
Y
162
N
sing
N
163
N
sing
Y
164
N
doub
N
165
N
sing
Y
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
doub
N
189
N
sing
N
190
N
sing
N
191
N
sing
Y
192
N
sing
Y
193
N
sing
Y
194
N
doub
N
195
N
sing
Y
196
N
sing
N
197
N
sing
Y
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
doub
N
208
N
doub
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
doub
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
Y
241
N
sing
Y
242
N
doub
Y
243
N
doub
N
244
N
sing
Y
245
N
sing
N
246
N
sing
Y
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
doub
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
doub
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
doub
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
doub
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
Y
350
N
doub
Y
351
N
sing
Y
352
N
sing
N
353
N
sing
Y
354
N
doub
N
355
N
sing
Y
356
N
doub
N
357
N
sing
Y
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
doub
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
doub
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
doub
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
Y
419
N
doub
Y
420
N
sing
Y
421
N
sing
N
422
N
sing
Y
423
N
doub
Y
424
N
sing
Y
425
N
sing
N
426
N
sing
Y
427
N
sing
Y
428
N
doub
N
429
N
sing
Y
430
N
doub
N
431
N
sing
Y
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
doub
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
Y
447
N
doub
Y
448
N
sing
Y
449
N
sing
N
450
N
sing
Y
451
N
doub
N
452
N
sing
Y
453
N
doub
N
454
N
sing
Y
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
doub
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
To be Published
0353
New Crystallographic Structure of HbII-III-Oxy and CN forms from Lucina pectinata.
10.2210/pdb3pt7/pdb
pdb_00003pt7
100
1
CCD
2007-10-06
ADSC QUANTUM 210
SINGLE WAVELENGTH
M
x-ray
1
0.88560
1.0
BM16
ESRF
0.88560
SYNCHROTRON
ESRF BEAMLINE BM16
17041.557
Hemoglobin II
1
nat
polymer
17461.986
Hemoglobin III
1
nat
polymer
616.487
PROTOPORPHYRIN IX CONTAINING FE
2
syn
non-polymer
31.999
OXYGEN MOLECULE
2
syn
non-polymer
92.094
GLYCEROL
1
syn
non-polymer
18.015
water
160
nat
water
no
yes
(ACE)TTLTNPQKAAIRSSWSKFMDNGVSNGQGFYMDLFKAHPETLTPFKSLFGGLTLAQLQDNPKMKAQSLVFCNGMSS
FVDHLDDNDMLVVLIQKMAKLHNNRGIRASDLRTAYDILIHYMEDHNHMVGGAKDAWEVFVGFICKTLGDYMKELS
XTTLTNPQKAAIRSSWSKFMDNGVSNGQGFYMDLFKAHPETLTPFKSLFGGLTLAQLQDNPKMKAQSLVFCNGMSSFVDH
LDDNDMLVVLIQKMAKLHNNRGIRASDLRTAYDILIHYMEDHNHMVGGAKDAWEVFVGFICKTLGDYMKELS
A
polypeptide(L)
no
no
SSGLTGPQKAALKSSWSRFMNNAVTNGTNFYMDLFKAYPDTLTPFKSLFQNVSFNQMTNHPTMKAQSLVFCNGMSSFVDN
LDDHEVLVVLLQKMAKLHFNRGIRIKELRDGYGVLLRYLEDHCHVEGSTKNAWEDFIAYICRVQGDFMKERL
SSGLTGPQKAALKSSWSRFMNNAVTNGTNFYMDLFKAYPDTLTPFKSLFQNVSFNQMTNHPTMKAQSLVFCNGMSSFVDN
LDDHEVLVVLLQKMAKLHFNRGIRIKELRDGYGVLLRYLEDHCHVEGSTKNAWEDFIAYICRVQGDFMKERL
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Clam
sample
29163
Lucina pectinata
HbII
ctenidia
Clam
sample
29163
Lucina pectinata
HbIII
ctenidia
1
3.02
59.31
0.448
Capillary Counterdiffusion
5.0
Sodium Formate, pH 5.0, Capillary Counterdiffusion, temperature 293.0K
293.0
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Data collection
Database references
Derived calculations
Refinement description
1
0
2011-12-07
1
1
2023-11-01
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Lucina pectinata HbII-Oxy pH4
Lucina pectinata HbII-Oxy pH5
Lucina pectinata HbII-Oxy pH8
Lucina pectinata HbII-Oxy pH9
Lucina pectinata HbII-Oxy pH7
RCSB
Y
PDBJ
2010-12-02
REL
REL
HEM
PROTOPORPHYRIN IX CONTAINING FE
OXY
OXYGEN MOLECULE
GOL
GLYCEROL
HOH
water
THE AUTHORS STATE THAT THE OBSERVED SEQUENCE DOES NOT MATCH THE DEPOSITED ONE FOR THE HBIII MONOMER (CHAIN B)
2OLP
PDB ENTRY 2OLP
PDB
experimental model
HEM
500
3
HEM
HEM
500
A
OXY
501
4
OXY
OXY
501
A
HEM
500
3
HEM
HEM
500
B
OXY
501
4
OXY
OXY
501
B
GOL
1
5
GOL
GOL
153
B
HOH
152
6
HOH
HOH
152
A
HOH
153
6
HOH
HOH
153
A
HOH
1
6
HOH
HOH
154
A
HOH
155
6
HOH
HOH
155
A
HOH
156
6
HOH
HOH
156
A
HOH
5
6
HOH
HOH
157
A
HOH
6
6
HOH
HOH
158
A
HOH
159
6
HOH
HOH
159
A
HOH
8
6
HOH
HOH
160
A
HOH
161
6
HOH
HOH
161
A
HOH
162
6
HOH
HOH
162
A
HOH
163
6
HOH
HOH
163
A
HOH
10
6
HOH
HOH
164
A
HOH
11
6
HOH
HOH
165
A
HOH
166
6
HOH
HOH
166
A
HOH
12
6
HOH
HOH
167
A
HOH
15
6
HOH
HOH
168
A
HOH
17
6
HOH
HOH
169
A
HOH
18
6
HOH
HOH
170
A
HOH
21
6
HOH
HOH
171
A
HOH
23
6
HOH
HOH
172
A
HOH
27
6
HOH
HOH
173
A
HOH
31
6
HOH
HOH
174
A
HOH
33
6
HOH
HOH
175
A
HOH
34
6
HOH
HOH
176
A
HOH
35
6
HOH
HOH
177
A
HOH
36
6
HOH
HOH
178
A
HOH
37
6
HOH
HOH
179
A
HOH
38
6
HOH
HOH
180
A
HOH
39
6
HOH
HOH
181
A
HOH
40
6
HOH
HOH
182
A
HOH
41
6
HOH
HOH
183
A
HOH
43
6
HOH
HOH
184
A
HOH
44
6
HOH
HOH
185
A
HOH
45
6
HOH
HOH
186
A
HOH
47
6
HOH
HOH
187
A
HOH
48
6
HOH
HOH
188
A
HOH
49
6
HOH
HOH
189
A
HOH
50
6
HOH
HOH
190
A
HOH
51
6
HOH
HOH
191
A
HOH
52
6
HOH
HOH
192
A
HOH
55
6
HOH
HOH
193
A
HOH
56
6
HOH
HOH
194
A
HOH
57
6
HOH
HOH
195
A
HOH
60
6
HOH
HOH
196
A
HOH
65
6
HOH
HOH
197
A
HOH
66
6
HOH
HOH
198
A
HOH
67
6
HOH
HOH
199
A
HOH
70
6
HOH
HOH
200
A
HOH
72
6
HOH
HOH
201
A
HOH
73
6
HOH
HOH
202
A
HOH
74
6
HOH
HOH
203
A
HOH
75
6
HOH
HOH
204
A
HOH
76
6
HOH
HOH
205
A
HOH
77
6
HOH
HOH
206
A
HOH
78
6
HOH
HOH
207
A
HOH
79
6
HOH
HOH
208
A
HOH
81
6
HOH
HOH
209
A
HOH
82
6
HOH
HOH
210
A
HOH
83
6
HOH
HOH
211
A
HOH
84
6
HOH
HOH
212
A
HOH
85
6
HOH
HOH
213
A
HOH
87
6
HOH
HOH
214
A
HOH
88
6
HOH
HOH
215
A
HOH
92
6
HOH
HOH
216
A
HOH
97
6
HOH
HOH
217
A
HOH
98
6
HOH
HOH
218
A
HOH
100
6
HOH
HOH
219
A
HOH
102
6
HOH
HOH
220
A
HOH
106
6
HOH
HOH
221
A
HOH
107
6
HOH
HOH
222
A
HOH
108
6
HOH
HOH
223
A
HOH
112
6
HOH
HOH
224
A
HOH
113
6
HOH
HOH
225
A
HOH
114
6
HOH
HOH
226
A
HOH
115
6
HOH
HOH
227
A
HOH
116
6
HOH
HOH
228
A
HOH
118
6
HOH
HOH
229
A
HOH
123
6
HOH
HOH
230
A
HOH
125
6
HOH
HOH
231
A
HOH
126
6
HOH
HOH
232
A
HOH
127
6
HOH
HOH
233
A
HOH
128
6
HOH
HOH
234
A
HOH
129
6
HOH
HOH
235
A
HOH
130
6
HOH
HOH
236
A
HOH
138
6
HOH
HOH
237
A
HOH
140
6
HOH
HOH
238
A
HOH
143
6
HOH
HOH
239
A
HOH
145
6
HOH
HOH
240
A
HOH
146
6
HOH
HOH
241
A
HOH
147
6
HOH
HOH
242
A
HOH
149
6
HOH
HOH
243
A
HOH
150
6
HOH
HOH
244
A
HOH
154
6
HOH
HOH
154
B
HOH
2
6
HOH
HOH
155
B
HOH
3
6
HOH
HOH
156
B
HOH
157
6
HOH
HOH
157
B
HOH
158
6
HOH
HOH
158
B
HOH
4
6
HOH
HOH
159
B
HOH
160
6
HOH
HOH
160
B
HOH
7
6
HOH
HOH
161
B
HOH
9
6
HOH
HOH
162
B
HOH
13
6
HOH
HOH
163
B
HOH
14
6
HOH
HOH
164
B
HOH
165
6
HOH
HOH
165
B
HOH
16
6
HOH
HOH
166
B
HOH
167
6
HOH
HOH
167
B
HOH
19
6
HOH
HOH
168
B
HOH
20
6
HOH
HOH
169
B
HOH
22
6
HOH
HOH
170
B
HOH
24
6
HOH
HOH
171
B
HOH
25
6
HOH
HOH
172
B
HOH
26
6
HOH
HOH
173
B
HOH
28
6
HOH
HOH
174
B
HOH
29
6
HOH
HOH
175
B
HOH
30
6
HOH
HOH
176
B
HOH
32
6
HOH
HOH
177
B
HOH
42
6
HOH
HOH
178
B
HOH
46
6
HOH
HOH
179
B
HOH
53
6
HOH
HOH
180
B
HOH
54
6
HOH
HOH
181
B
HOH
58
6
HOH
HOH
182
B
HOH
59
6
HOH
HOH
183
B
HOH
61
6
HOH
HOH
184
B
HOH
62
6
HOH
HOH
185
B
HOH
63
6
HOH
HOH
186
B
HOH
64
6
HOH
HOH
187
B
HOH
68
6
HOH
HOH
188
B
HOH
69
6
HOH
HOH
189
B
HOH
71
6
HOH
HOH
190
B
HOH
80
6
HOH
HOH
191
B
HOH
86
6
HOH
HOH
192
B
HOH
89
6
HOH
HOH
193
B
HOH
90
6
HOH
HOH
194
B
HOH
91
6
HOH
HOH
195
B
HOH
94
6
HOH
HOH
196
B
HOH
95
6
HOH
HOH
197
B
HOH
96
6
HOH
HOH
198
B
HOH
99
6
HOH
HOH
199
B
HOH
101
6
HOH
HOH
200
B
HOH
104
6
HOH
HOH
201
B
HOH
105
6
HOH
HOH
202
B
HOH
110
6
HOH
HOH
203
B
HOH
111
6
HOH
HOH
204
B
HOH
117
6
HOH
HOH
205
B
HOH
119
6
HOH
HOH
206
B
HOH
120
6
HOH
HOH
207
B
HOH
121
6
HOH
HOH
208
B
HOH
122
6
HOH
HOH
209
B
HOH
132
6
HOH
HOH
210
B
HOH
133
6
HOH
HOH
211
B
HOH
134
6
HOH
HOH
212
B
HOH
135
6
HOH
HOH
213
B
HOH
136
6
HOH
HOH
214
B
HOH
137
6
HOH
HOH
215
B
HOH
139
6
HOH
HOH
216
B
HOH
141
6
HOH
HOH
217
B
HOH
142
6
HOH
HOH
218
B
HOH
144
6
HOH
HOH
219
B
HOH
151
6
HOH
HOH
220
B
3.000
3.000
19.940
19.940
ACE
0
n
1
ACE
0
A
THR
1
n
2
THR
1
A
THR
2
n
3
THR
2
A
LEU
3
n
4
LEU
3
A
THR
4
n
5
THR
4
A
ASN
5
n
6
ASN
5
A
PRO
6
n
7
PRO
6
A
GLN
7
n
8
GLN
7
A
LYS
8
n
9
LYS
8
A
ALA
9
n
10
ALA
9
A
ALA
10
n
11
ALA
10
A
ILE
11
n
12
ILE
11
A
ARG
12
n
13
ARG
12
A
SER
13
n
14
SER
13
A
SER
14
n
15
SER
14
A
TRP
15
n
16
TRP
15
A
SER
16
n
17
SER
16
A
LYS
17
n
18
LYS
17
A
PHE
18
n
19
PHE
18
A
MET
19
n
20
MET
19
A
ASP
20
n
21
ASP
20
A
ASN
21
n
22
ASN
21
A
GLY
22
n
23
GLY
22
A
VAL
23
n
24
VAL
23
A
SER
24
n
25
SER
24
A
ASN
25
n
26
ASN
25
A
GLY
26
n
27
GLY
26
A
GLN
27
n
28
GLN
27
A
GLY
28
n
29
GLY
28
A
PHE
29
n
30
PHE
29
A
TYR
30
n
31
TYR
30
A
MET
31
n
32
MET
31
A
ASP
32
n
33
ASP
32
A
LEU
33
n
34
LEU
33
A
PHE
34
n
35
PHE
34
A
LYS
35
n
36
LYS
35
A
ALA
36
n
37
ALA
36
A
HIS
37
n
38
HIS
37
A
PRO
38
n
39
PRO
38
A
GLU
39
n
40
GLU
39
A
THR
40
n
41
THR
40
A
LEU
41
n
42
LEU
41
A
THR
42
n
43
THR
42
A
PRO
43
n
44
PRO
43
A
PHE
44
n
45
PHE
44
A
LYS
45
n
46
LYS
45
A
SER
46
n
47
SER
46
A
LEU
47
n
48
LEU
47
A
PHE
48
n
49
PHE
48
A
GLY
49
n
50
GLY
49
A
GLY
50
n
51
GLY
50
A
LEU
51
n
52
LEU
51
A
THR
52
n
53
THR
52
A
LEU
53
n
54
LEU
53
A
ALA
54
n
55
ALA
54
A
GLN
55
n
56
GLN
55
A
LEU
56
n
57
LEU
56
A
GLN
57
n
58
GLN
57
A
ASP
58
n
59
ASP
58
A
ASN
59
n
60
ASN
59
A
PRO
60
n
61
PRO
60
A
LYS
61
n
62
LYS
61
A
MET
62
n
63
MET
62
A
LYS
63
n
64
LYS
63
A
ALA
64
n
65
ALA
64
A
GLN
65
n
66
GLN
65
A
SER
66
n
67
SER
66
A
LEU
67
n
68
LEU
67
A
VAL
68
n
69
VAL
68
A
PHE
69
n
70
PHE
69
A
CYS
70
n
71
CYS
70
A
ASN
71
n
72
ASN
71
A
GLY
72
n
73
GLY
72
A
MET
73
n
74
MET
73
A
SER
74
n
75
SER
74
A
SER
75
n
76
SER
75
A
PHE
76
n
77
PHE
76
A
VAL
77
n
78
VAL
77
A
ASP
78
n
79
ASP
78
A
HIS
79
n
80
HIS
79
A
LEU
80
n
81
LEU
80
A
ASP
81
n
82
ASP
81
A
ASP
82
n
83
ASP
82
A
ASN
83
n
84
ASN
83
A
ASP
84
n
85
ASP
84
A
MET
85
n
86
MET
85
A
LEU
86
n
87
LEU
86
A
VAL
87
n
88
VAL
87
A
VAL
88
n
89
VAL
88
A
LEU
89
n
90
LEU
89
A
ILE
90
n
91
ILE
90
A
GLN
91
n
92
GLN
91
A
LYS
92
n
93
LYS
92
A
MET
93
n
94
MET
93
A
ALA
94
n
95
ALA
94
A
LYS
95
n
96
LYS
95
A
LEU
96
n
97
LEU
96
A
HIS
97
n
98
HIS
97
A
ASN
98
n
99
ASN
98
A
ASN
99
n
100
ASN
99
A
ARG
100
n
101
ARG
100
A
GLY
101
n
102
GLY
101
A
ILE
102
n
103
ILE
102
A
ARG
103
n
104
ARG
103
A
ALA
104
n
105
ALA
104
A
SER
105
n
106
SER
105
A
ASP
106
n
107
ASP
106
A
LEU
107
n
108
LEU
107
A
ARG
108
n
109
ARG
108
A
THR
109
n
110
THR
109
A
ALA
110
n
111
ALA
110
A
TYR
111
n
112
TYR
111
A
ASP
112
n
113
ASP
112
A
ILE
113
n
114
ILE
113
A
LEU
114
n
115
LEU
114
A
ILE
115
n
116
ILE
115
A
HIS
116
n
117
HIS
116
A
TYR
117
n
118
TYR
117
A
MET
118
n
119
MET
118
A
GLU
119
n
120
GLU
119
A
ASP
120
n
121
ASP
120
A
HIS
121
n
122
HIS
121
A
ASN
122
n
123
ASN
122
A
HIS
123
n
124
HIS
123
A
MET
124
n
125
MET
124
A
VAL
125
n
126
VAL
125
A
GLY
126
n
127
GLY
126
A
GLY
127
n
128
GLY
127
A
ALA
128
n
129
ALA
128
A
LYS
129
n
130
LYS
129
A
ASP
130
n
131
ASP
130
A
ALA
131
n
132
ALA
131
A
TRP
132
n
133
TRP
132
A
GLU
133
n
134
GLU
133
A
VAL
134
n
135
VAL
134
A
PHE
135
n
136
PHE
135
A
VAL
136
n
137
VAL
136
A
GLY
137
n
138
GLY
137
A
PHE
138
n
139
PHE
138
A
ILE
139
n
140
ILE
139
A
CYS
140
n
141
CYS
140
A
LYS
141
n
142
LYS
141
A
THR
142
n
143
THR
142
A
LEU
143
n
144
LEU
143
A
GLY
144
n
145
GLY
144
A
ASP
145
n
146
ASP
145
A
TYR
146
n
147
TYR
146
A
MET
147
n
148
MET
147
A
LYS
148
n
149
LYS
148
A
GLU
149
n
150
GLU
149
A
LEU
150
n
151
LEU
150
A
SER
151
n
152
SER
151
A
SER
1
n
1
SER
1
B
SER
2
n
2
SER
2
B
GLY
3
n
3
GLY
3
B
LEU
4
n
4
LEU
4
B
THR
5
n
5
THR
5
B
GLY
6
n
6
GLY
6
B
PRO
7
n
7
PRO
7
B
GLN
8
n
8
GLN
8
B
LYS
9
n
9
LYS
9
B
ALA
10
n
10
ALA
10
B
ALA
11
n
11
ALA
11
B
LEU
12
n
12
LEU
12
B
LYS
13
n
13
LYS
13
B
SER
14
n
14
SER
14
B
SER
15
n
15
SER
15
B
TRP
16
n
16
TRP
16
B
SER
17
n
17
SER
17
B
ARG
18
n
18
ARG
18
B
PHE
19
n
19
PHE
19
B
MET
20
n
20
MET
20
B
ASN
21
n
21
ASN
21
B
ASN
22
n
22
ASN
22
B
ALA
23
n
23
ALA
23
B
VAL
24
n
24
VAL
24
B
THR
25
n
25
THR
25
B
ASN
26
n
26
ASN
26
B
GLY
27
n
27
GLY
27
B
THR
28
n
28
THR
28
B
ASN
29
n
29
ASN
29
B
PHE
30
n
30
PHE
30
B
TYR
31
n
31
TYR
31
B
MET
32
n
32
MET
32
B
ASP
33
n
33
ASP
33
B
LEU
34
n
34
LEU
34
B
PHE
35
n
35
PHE
35
B
LYS
36
n
36
LYS
36
B
ALA
37
n
37
ALA
37
B
TYR
38
n
38
TYR
38
B
PRO
39
n
39
PRO
39
B
ASP
40
n
40
ASP
40
B
THR
41
n
41
THR
41
B
LEU
42
n
42
LEU
42
B
THR
43
n
43
THR
43
B
PRO
44
n
44
PRO
44
B
PHE
45
n
45
PHE
45
B
LYS
46
n
46
LYS
46
B
SER
47
n
47
SER
47
B
LEU
48
n
48
LEU
48
B
PHE
49
n
49
PHE
49
B
GLN
50
n
50
GLN
50
B
ASN
51
n
51
ASN
51
B
VAL
52
n
52
VAL
52
B
SER
53
n
53
SER
53
B
PHE
54
n
54
PHE
54
B
ASN
55
n
55
ASN
55
B
GLN
56
n
56
GLN
56
B
MET
57
n
57
MET
57
B
THR
58
n
58
THR
58
B
ASN
59
n
59
ASN
59
B
HIS
60
n
60
HIS
60
B
PRO
61
n
61
PRO
61
B
THR
62
n
62
THR
62
B
MET
63
n
63
MET
63
B
LYS
64
n
64
LYS
64
B
ALA
65
n
65
ALA
65
B
GLN
66
n
66
GLN
66
B
SER
67
n
67
SER
67
B
LEU
68
n
68
LEU
68
B
VAL
69
n
69
VAL
69
B
PHE
70
n
70
PHE
70
B
CYS
71
n
71
CYS
71
B
ASN
72
n
72
ASN
72
B
GLY
73
n
73
GLY
73
B
MET
74
n
74
MET
74
B
SER
75
n
75
SER
75
B
SER
76
n
76
SER
76
B
PHE
77
n
77
PHE
77
B
VAL
78
n
78
VAL
78
B
ASP
79
n
79
ASP
79
B
ASN
80
n
80
ASN
80
B
LEU
81
n
81
LEU
81
B
ASP
82
n
82
ASP
82
B
ASP
83
n
83
ASP
83
B
HIS
84
n
84
HIS
84
B
GLU
85
n
85
GLU
85
B
VAL
86
n
86
VAL
86
B
LEU
87
n
87
LEU
87
B
VAL
88
n
88
VAL
88
B
VAL
89
n
89
VAL
89
B
LEU
90
n
90
LEU
90
B
LEU
91
n
91
LEU
91
B
GLN
92
n
92
GLN
92
B
LYS
93
n
93
LYS
93
B
MET
94
n
94
MET
94
B
ALA
95
n
95
ALA
95
B
LYS
96
n
96
LYS
96
B
LEU
97
n
97
LEU
97
B
HIS
98
n
98
HIS
98
B
PHE
99
n
99
PHE
99
B
ASN
100
n
100
ASN
100
B
ARG
101
n
101
ARG
101
B
GLY
102
n
102
GLY
102
B
ILE
103
n
103
ILE
103
B
ARG
104
n
104
ARG
104
B
ILE
105
n
105
ILE
105
B
LYS
106
n
106
LYS
106
B
GLU
107
n
107
GLU
107
B
LEU
108
n
108
LEU
108
B
ARG
109
n
109
ARG
109
B
ASP
110
n
110
ASP
110
B
GLY
111
n
111
GLY
111
B
TYR
112
n
112
TYR
112
B
GLY
113
n
113
GLY
113
B
VAL
114
n
114
VAL
114
B
LEU
115
n
115
LEU
115
B
LEU
116
n
116
LEU
116
B
ARG
117
n
117
ARG
117
B
TYR
118
n
118
TYR
118
B
LEU
119
n
119
LEU
119
B
GLU
120
n
120
GLU
120
B
ASP
121
n
121
ASP
121
B
HIS
122
n
122
HIS
122
B
CYS
123
n
123
CYS
123
B
HIS
124
n
124
HIS
124
B
VAL
125
n
125
VAL
125
B
GLU
126
n
126
GLU
126
B
GLY
127
n
127
GLY
127
B
SER
128
n
128
SER
128
B
THR
129
n
129
THR
129
B
LYS
130
n
130
LYS
130
B
ASN
131
n
131
ASN
131
B
ALA
132
n
132
ALA
132
B
TRP
133
n
133
TRP
133
B
GLU
134
n
134
GLU
134
B
ASP
135
n
135
ASP
135
B
PHE
136
n
136
PHE
136
B
ILE
137
n
137
ILE
137
B
ALA
138
n
138
ALA
138
B
TYR
139
n
139
TYR
139
B
ILE
140
n
140
ILE
140
B
CYS
141
n
141
CYS
141
B
ARG
142
n
142
ARG
142
B
VAL
143
n
143
VAL
143
B
GLN
144
n
144
GLN
144
B
GLY
145
n
145
GLY
145
B
ASP
146
n
146
ASP
146
B
PHE
147
n
147
PHE
147
B
MET
148
n
148
MET
148
B
LYS
149
n
149
LYS
149
B
GLU
150
n
150
GLU
150
B
ARG
151
n
151
ARG
151
B
LEU
152
n
152
LEU
152
B
author_and_software_defined_assembly
PISA
2
dimeric
1710
-12
14100
A
HIS
97
A
NE2
HIS
98
1_555
A
HEM
500
C
FE
HEM
1_555
A
HEM
500
C
NA
HEM
1_555
92.2
A
HIS
97
A
NE2
HIS
98
1_555
A
HEM
500
C
FE
HEM
1_555
A
HEM
500
C
NB
HEM
1_555
85.0
A
HEM
500
C
NA
HEM
1_555
A
HEM
500
C
FE
HEM
1_555
A
HEM
500
C
NB
HEM
1_555
90.2
A
HIS
97
A
NE2
HIS
98
1_555
A
HEM
500
C
FE
HEM
1_555
A
HEM
500
C
NC
HEM
1_555
90.2
A
HEM
500
C
NA
HEM
1_555
A
HEM
500
C
FE
HEM
1_555
A
HEM
500
C
NC
HEM
1_555
176.0
A
HEM
500
C
NB
HEM
1_555
A
HEM
500
C
FE
HEM
1_555
A
HEM
500
C
NC
HEM
1_555
86.8
A
HIS
97
A
NE2
HIS
98
1_555
A
HEM
500
C
FE
HEM
1_555
A
HEM
500
C
ND
HEM
1_555
96.6
A
HEM
500
C
NA
HEM
1_555
A
HEM
500
C
FE
HEM
1_555
A
HEM
500
C
ND
HEM
1_555
90.6
A
HEM
500
C
NB
HEM
1_555
A
HEM
500
C
FE
HEM
1_555
A
HEM
500
C
ND
HEM
1_555
178.1
A
HEM
500
C
NC
HEM
1_555
A
HEM
500
C
FE
HEM
1_555
A
HEM
500
C
ND
HEM
1_555
92.3
A
HIS
97
A
NE2
HIS
98
1_555
A
HEM
500
C
FE
HEM
1_555
A
OXY
501
D
O2
OXY
1_555
171.3
A
HEM
500
C
NA
HEM
1_555
A
HEM
500
C
FE
HEM
1_555
A
OXY
501
D
O2
OXY
1_555
84.5
A
HEM
500
C
NB
HEM
1_555
A
HEM
500
C
FE
HEM
1_555
A
OXY
501
D
O2
OXY
1_555
86.9
A
HEM
500
C
NC
HEM
1_555
A
HEM
500
C
FE
HEM
1_555
A
OXY
501
D
O2
OXY
1_555
92.7
A
HEM
500
C
ND
HEM
1_555
A
HEM
500
C
FE
HEM
1_555
A
OXY
501
D
O2
OXY
1_555
91.5
B
HIS
98
B
NE2
HIS
98
1_555
B
HEM
500
E
FE
HEM
1_555
B
HEM
500
E
NA
HEM
1_555
86.3
B
HIS
98
B
NE2
HIS
98
1_555
B
HEM
500
E
FE
HEM
1_555
B
HEM
500
E
NB
HEM
1_555
88.4
B
HEM
500
E
NA
HEM
1_555
B
HEM
500
E
FE
HEM
1_555
B
HEM
500
E
NB
HEM
1_555
92.9
B
HIS
98
B
NE2
HIS
98
1_555
B
HEM
500
E
FE
HEM
1_555
B
HEM
500
E
NC
HEM
1_555
100.6
B
HEM
500
E
NA
HEM
1_555
B
HEM
500
E
FE
HEM
1_555
B
HEM
500
E
NC
HEM
1_555
173.0
B
HEM
500
E
NB
HEM
1_555
B
HEM
500
E
FE
HEM
1_555
B
HEM
500
E
NC
HEM
1_555
88.8
B
HIS
98
B
NE2
HIS
98
1_555
B
HEM
500
E
FE
HEM
1_555
B
HEM
500
E
ND
HEM
1_555
95.2
B
HEM
500
E
NA
HEM
1_555
B
HEM
500
E
FE
HEM
1_555
B
HEM
500
E
ND
HEM
1_555
86.7
B
HEM
500
E
NB
HEM
1_555
B
HEM
500
E
FE
HEM
1_555
B
HEM
500
E
ND
HEM
1_555
176.4
B
HEM
500
E
NC
HEM
1_555
B
HEM
500
E
FE
HEM
1_555
B
HEM
500
E
ND
HEM
1_555
91.1
B
HIS
98
B
NE2
HIS
98
1_555
B
HEM
500
E
FE
HEM
1_555
B
OXY
501
F
O2
OXY
1_555
171.8
B
HEM
500
E
NA
HEM
1_555
B
HEM
500
E
FE
HEM
1_555
B
OXY
501
F
O2
OXY
1_555
91.1
B
HEM
500
E
NB
HEM
1_555
B
HEM
500
E
FE
HEM
1_555
B
OXY
501
F
O2
OXY
1_555
84.0
B
HEM
500
E
NC
HEM
1_555
B
HEM
500
E
FE
HEM
1_555
B
OXY
501
F
O2
OXY
1_555
82.3
B
HEM
500
E
ND
HEM
1_555
B
HEM
500
E
FE
HEM
1_555
B
OXY
501
F
O2
OXY
1_555
92.4
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
CD
LYS
45
A
CD
LYS
46
1
Y
1
A
CE
LYS
45
A
CE
LYS
46
1
Y
1
A
NZ
LYS
45
A
NZ
LYS
46
1
Y
1
A
CD
LYS
141
A
CD
LYS
142
1
Y
1
A
CE
LYS
141
A
CE
LYS
142
1
Y
1
A
NZ
LYS
141
A
NZ
LYS
142
1
Y
1
A
CG
GLU
149
A
CG
GLU
150
1
Y
1
A
CD
GLU
149
A
CD
GLU
150
1
Y
1
A
OE1
GLU
149
A
OE1
GLU
150
1
Y
1
A
OE2
GLU
149
A
OE2
GLU
150
1
Y
1
A
OG
SER
151
A
OG
SER
152
1
Y
1
B
CG
LYS
36
B
CG
LYS
36
1
Y
1
B
CD
LYS
36
B
CD
LYS
36
1
Y
1
B
CE
LYS
36
B
CE
LYS
36
1
Y
1
B
NZ
LYS
36
B
NZ
LYS
36
1
Y
1
B
CG
GLN
50
B
CG
GLN
50
1
Y
1
B
CD
GLN
50
B
CD
GLN
50
1
Y
1
B
OE1
GLN
50
B
OE1
GLN
50
1
Y
1
B
NE2
GLN
50
B
NE2
GLN
50
1
Y
1
B
OD1
ASN
51
B
OD1
ASN
51
1
Y
1
B
ND2
ASN
51
B
ND2
ASN
51
1
Y
1
B
CG
GLN
56
B
CG
GLN
56
1
Y
1
B
CD
GLN
56
B
CD
GLN
56
1
Y
1
B
OE1
GLN
56
B
OE1
GLN
56
1
Y
1
B
NE2
GLN
56
B
NE2
GLN
56
1
Y
1
B
CG
LYS
106
B
CG
LYS
106
1
Y
1
B
CD
LYS
106
B
CD
LYS
106
1
Y
1
B
CE
LYS
106
B
CE
LYS
106
1
Y
1
B
NZ
LYS
106
B
NZ
LYS
106
1
Y
1
A
ASN
83
11.55
A
1
A
ASN
83
13.25
B
1
-20.23
1.60
122.70
102.47
A
A
A
O
C
N
ACE
ACE
THR
0
0
1
Y
1
A
A
C
N
ACE
THR
0
1
0.208
0.023
1.336
1.544
Y
1
A
THR
2
65.22
-6.73
95.590
40.1398
16.040
3.3967
0.0000
-0.0000
3.3967
0.0000
-6.7933
0.2451
0.1893
0.1920
0.1920
2.1500
19.9420
1214
23658
23658
5.1300
99.4200
1.000
0.170
0.8352
0.2500
Random
1
THROUGHOUT
1.340
MOLECULAR REPLACEMENT
0.9000
1.1100
PDB ENTRY 2OLP
ML
FLAT BULK SOLVENT MODEL
62.1830
0.4000
2.1500
19.9420
160
2644
96
0
2388
0.018
2704
1.057
3711
0.068
380
0.004
469
15.582
987
0.2740
0.2137
2.2360
130
2468
2598
9
100.0000
0.3128
0.2141
2.3376
143
2437
2580
9
100.0000
0.2681
0.2050
2.4607
141
2434
2575
9
100.0000
0.2749
0.2029
2.6145
134
2472
2606
9
100.0000
0.2952
0.2153
2.8159
123
2492
2615
9
100.0000
0.2756
0.2050
3.0983
147
2487
2634
9
100.0000
0.2353
0.1847
3.5444
144
2501
2645
9
100.0000
0.1833
0.1517
4.4574
135
2531
2666
9
99.0000
0.2319
0.1864
19.9433
117
2622
2739
9
96.0000
33.59
2.150
20.000
3PT7
23741
23741
1
1
0.070
0.070
0.959
1
14.600
10.700
99.400
0.367
2.150
2.230
2339
1.096
1
10.900
100.000
0.304
2.230
2.320
2334
1.069
1
10.900
100.000
0.231
2.320
2.420
2325
1.021
1
10.900
100.000
0.177
2.420
2.550
2350
0.988
1
10.800
99.900
0.136
2.550
2.710
2345
0.987
1
10.900
100.000
0.100
2.710
2.920
2372
0.906
1
10.800
100.000
0.075
2.920
3.210
2372
0.886
1
10.800
99.800
0.055
3.210
3.670
2395
0.898
1
10.600
99.800
0.047
3.670
4.610
2432
0.888
1
10.400
99.100
0.048
4.610
20.000
2477
0.843
1
9.600
95.600
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
program
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
program
phasing
Alexei Vaguine
alexei@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/molrep.html
MOLREP
program
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.6.1_357
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
data collection
HKL-2000
Structure of HbII-III-Oxy from Lucina pectinata at pH 5.0
1
N
N
2
N
N
3
N
N
4
N
N
3
N
N
4
N
N
5
N
N
6
N
N
6
N
N
A
THR
4
A
THR
5
HELX_P
A
ASN
21
A
ASN
22
1
1
18
A
ASN
21
A
ASN
22
HELX_P
A
HIS
37
A
HIS
38
1
2
17
A
PRO
38
A
PRO
39
HELX_P
A
PRO
43
A
PRO
44
5
3
6
A
PHE
44
A
PHE
45
HELX_P
A
GLY
49
A
GLY
50
1
4
6
A
THR
52
A
THR
53
HELX_P
A
GLN
57
A
GLN
58
1
5
6
A
ASN
59
A
ASN
60
HELX_P
A
ASP
78
A
ASP
79
1
6
20
A
ASP
82
A
ASP
83
HELX_P
A
ASN
99
A
ASN
100
1
7
18
A
ARG
103
A
ARG
104
HELX_P
A
HIS
121
A
HIS
122
1
8
19
A
GLY
127
A
GLY
128
HELX_P
A
GLU
149
A
GLU
150
1
9
23
B
THR
5
B
THR
5
HELX_P
B
ASN
21
B
ASN
21
1
10
17
B
ASN
22
B
ASN
22
HELX_P
B
TYR
38
B
TYR
38
1
11
17
B
PRO
39
B
PRO
39
HELX_P
B
LYS
46
B
LYS
46
5
12
8
B
SER
53
B
SER
53
HELX_P
B
THR
58
B
THR
58
1
13
6
B
HIS
60
B
HIS
60
HELX_P
B
ASP
79
B
ASP
79
1
14
20
B
ASP
83
B
ASP
83
HELX_P
B
ASN
100
B
ASN
100
1
15
18
B
ARG
104
B
ARG
104
HELX_P
B
HIS
122
B
HIS
122
1
16
19
B
GLY
127
B
GLY
127
HELX_P
B
ARG
151
B
ARG
151
1
17
25
covale
1.544
both
A
ACE
0
A
C
ACE
1
1_555
A
THR
1
A
N
THR
2
1_555
metalc
2.176
A
HIS
97
A
NE2
HIS
98
1_555
A
HEM
500
C
FE
HEM
1_555
metalc
2.095
A
HEM
500
C
FE
HEM
1_555
A
OXY
501
D
O2
OXY
1_555
metalc
2.196
B
HIS
98
B
NE2
HIS
98
1_555
B
HEM
500
E
FE
HEM
1_555
metalc
1.821
B
HEM
500
E
FE
HEM
1_555
B
OXY
501
F
O2
OXY
1_555
OXYGEN TRANSPORT
oxygen carrier, OXYGEN TRANSPORT
Q86G74_LUCPE
UNP
1
2
Q86G74
TTLTNPQKAAIRSSWSKFMDNGVSNGQGFYMDLFKAHPETLTPFKSLFGGLTLAQLQDNPKMKAQSLVFCNGMSSFVDHL
DDNDMLVVLIQKMAKLHNNRGIRASDLRTAYDILIHYMEDHNHMVGGAKDAWEVFVGFICKTLGDYMKELS
A7UAU9_LUCPE
UNP
2
2
A7UAU9
SSGLTGPQKAALKSSWSRFMDNAVTNGTNFYMDLFKAYPDTLTPFKSLFEDVSFNQMTDHPTMKAQALVFCNGMSSFVDN
LDDHEVLVVLLQKMAKLHFNRGIRIKELRDGYGVLLRYLEDHCHVEGSTKNAWEDFIAYICRVQGDFMKERL
2
152
3PT7
1
151
Q86G74
A
1
2
152
2
153
3PT7
1
152
A7UAU9
B
2
1
152
1
acetylation
ACE
0
3PT7
A
Q86G74
UNP
1
2
ASP
SEE REMARK 999
ASN
21
3PT7
B
A7UAU9
UNP
22
21
2
GLU
SEE REMARK 999
GLN
50
3PT7
B
A7UAU9
UNP
51
50
2
ASP
SEE REMARK 999
ASN
51
3PT7
B
A7UAU9
UNP
52
51
2
ASP
SEE REMARK 999
ASN
59
3PT7
B
A7UAU9
UNP
60
59
2
ALA
SEE REMARK 999
SER
67
3PT7
B
A7UAU9
UNP
68
67
BINDING SITE FOR RESIDUE HEM A 500
A
HEM
500
Software
23
BINDING SITE FOR RESIDUE OXY A 501
A
OXY
501
Software
3
BINDING SITE FOR RESIDUE HEM B 500
B
HEM
500
Software
24
BINDING SITE FOR RESIDUE OXY B 501
B
OXY
501
Software
4
BINDING SITE FOR RESIDUE GOL B 153
B
GOL
153
Software
3
A
THR
40
A
THR
41
23
1_555
A
PRO
43
A
PRO
44
23
1_555
A
PHE
44
A
PHE
45
23
1_555
A
LEU
47
A
LEU
48
23
1_555
A
GLN
65
A
GLN
66
23
1_555
A
VAL
68
A
VAL
69
23
1_555
A
MET
73
A
MET
74
23
1_555
A
MET
93
A
MET
94
23
1_555
A
LEU
96
A
LEU
97
23
1_555
A
HIS
97
A
HIS
98
23
1_555
A
ARG
100
A
ARG
101
23
1_555
A
ILE
102
A
ILE
103
23
1_555
A
LEU
107
A
LEU
108
23
1_555
A
TYR
111
A
TYR
112
23
1_555
A
HOH
168
H
HOH
23
1_555
A
HOH
169
H
HOH
23
1_555
A
HOH
178
H
HOH
23
1_555
A
HOH
187
H
HOH
23
1_555
A
OXY
501
D
OXY
23
1_555
B
LYS
93
B
LYS
93
23
1_555
B
LEU
97
B
LEU
97
23
1_555
B
HOH
191
I
HOH
23
1_555
B
HOH
200
I
HOH
23
1_555
A
TYR
30
A
TYR
31
3
1_555
A
GLN
65
A
GLN
66
3
1_555
A
HEM
500
C
HEM
3
1_555
A
LYS
92
A
LYS
93
24
1_555
B
THR
41
B
THR
41
24
1_555
B
PRO
44
B
PRO
44
24
1_555
B
PHE
45
B
PHE
45
24
1_555
B
LEU
48
B
LEU
48
24
1_555
B
GLN
66
B
GLN
66
24
1_555
B
VAL
69
B
VAL
69
24
1_555
B
PHE
70
B
PHE
70
24
1_555
B
MET
74
B
MET
74
24
1_555
B
MET
94
B
MET
94
24
1_555
B
LEU
97
B
LEU
97
24
1_555
B
HIS
98
B
HIS
98
24
1_555
B
ARG
101
B
ARG
101
24
1_555
B
ILE
103
B
ILE
103
24
1_555
B
GLU
107
B
GLU
107
24
1_555
B
LEU
108
B
LEU
108
24
1_555
B
TYR
112
B
TYR
112
24
1_555
B
HOH
162
I
HOH
24
1_555
B
HOH
166
I
HOH
24
1_555
B
HOH
168
I
HOH
24
1_555
B
HOH
172
I
HOH
24
1_555
B
HOH
180
I
HOH
24
1_555
B
HOH
190
I
HOH
24
1_555
B
OXY
501
F
OXY
24
1_555
B
TYR
31
B
TYR
31
4
1_555
B
PHE
45
B
PHE
45
4
1_555
B
GLN
66
B
GLN
66
4
1_555
B
HEM
500
E
HEM
4
1_555
B
GLN
92
B
GLN
92
3
1_555
B
HOH
160
I
HOH
3
1_555
B
HOH
200
I
HOH
3
1_555
94
P 42 21 2