0.016995 0.000000 0.000000 0.000000 0.011605 0.000000 0.000000 0.000000 0.021626 0.00000 0.00000 0.00000 Zhang, Y. Weber, I.T. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 58.840 86.170 46.240 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C38 H50 N6 O5 670.841 (2S)-N-[(2S,3R)-4-[(2S,3S,4aS,8aS)-3-(tert-butylcarbamoyl)-3,4,4a,5,6,7,8,8a-octahydro-1H-isoquinolin-2-yl]-3-hydroxy-1 -phenyl-butan-2-yl]-2-(quinolin-2-ylcarbonylamino)butanediamide Fortovase; SAQUINAVIR; RO 31-8959 peptide-like C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CL N 75 N N N 76 R C N 77 N C N 78 N O N 79 N C N 80 N S N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N N N 90 S C N 91 N C N 92 N O N 93 N C N 94 N C N 95 N C N 96 N O N 97 N N N 98 N O N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N N N 110 S C N 111 N C N 112 N O N 113 N C N 114 N C N 115 N C N 116 N O N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N N N 129 N C N 130 N C N 131 N O N 132 N O N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N C N 139 N O N 140 N C N 141 N O N 142 N C N 143 N O N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N N N 153 S C N 154 N C N 155 N O N 156 N C Y 157 N C Y 158 N N Y 159 N C Y 160 N C Y 161 N N N 162 N O N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N O N 174 N H N 175 N H N 176 N N N 177 S C N 178 N C N 179 N O N 180 S C N 181 N C N 182 N C N 183 N C N 184 N O N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N N N 199 S C N 200 N C N 201 N O N 202 N C N 203 N C N 204 N C N 205 N C N 206 N O N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N N N 221 S C N 222 N C N 223 N O N 224 N C N 225 N C N 226 N C N 227 N C N 228 N N N 229 N O N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N N N 246 S C N 247 N C N 248 N O N 249 N C N 250 N C N 251 N S N 252 N C N 253 N O N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N N N 266 S C N 267 N C N 268 N O N 269 N C Y 270 N C Y 271 N C Y 272 N C Y 273 N C Y 274 N C Y 275 N C N 276 N O N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N N N 289 S C N 290 N C N 291 N O N 292 N C N 293 N C N 294 N C N 295 N O N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N C N 306 N O Y 307 N N Y 308 N C Y 309 N C Y 310 N C Y 311 N C Y 312 N C Y 313 N C Y 314 N C Y 315 N C Y 316 N C N 317 N N N 318 S C N 319 N C N 320 N O N 321 N C N 322 N C N 323 N O N 324 N N N 325 R C N 326 N O N 327 S C N 328 N N N 329 N C Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C Y 335 N C N 336 N N N 337 N C N 338 S C N 339 N C N 340 N O N 341 N C N 342 S C N 343 N C N 344 N C N 345 N C N 346 N C N 347 S C N 348 N C N 349 N N N 350 N C N 351 N C N 352 N C N 353 N C N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N N N 405 S C N 406 N C N 407 N O N 408 N C N 409 N O N 410 N O N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N N N 419 S C N 420 N C N 421 N O N 422 R C N 423 N O N 424 N C N 425 N O N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N N N 436 S C N 437 N C N 438 N O N 439 N C Y 440 N C Y 441 N C Y 442 N C Y 443 N N Y 444 N C Y 445 N C Y 446 N C Y 447 N C Y 448 N C N 449 N O N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N N N 463 S C N 464 N C N 465 N O N 466 N C Y 467 N C Y 468 N C Y 469 N C Y 470 N C Y 471 N C Y 472 N C N 473 N O N 474 N O N 475 N H N 476 N H N 477 N H N 478 N H N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N N N 487 S C N 488 N C N 489 N O N 490 N C N 491 N C N 492 N C N 493 N O N 494 N H N 495 N H N 496 N H N 497 N H N 498 N H N 499 N H N 500 N H N 501 N H N 502 N H N 503 N H N 504 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing Y 153 N sing Y 154 N doub Y 155 N doub N 156 N sing Y 157 N sing N 158 N sing Y 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N doub N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N doub N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N doub N 257 N sing N 258 N sing N 259 N sing N 260 N sing Y 261 N doub Y 262 N sing Y 263 N sing N 264 N sing Y 265 N doub N 266 N sing Y 267 N doub N 268 N sing Y 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N doub N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N doub N 291 N sing Y 292 N doub Y 293 N sing Y 294 N sing Y 295 N doub N 296 N sing Y 297 N sing N 298 N sing Y 299 N doub Y 300 N sing Y 301 N sing N 302 N sing Y 303 N doub N 304 N sing Y 305 N sing N 306 N sing Y 307 N doub N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N doub N 315 N sing N 316 N sing N 317 N sing N 318 N doub N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing Y 333 N doub Y 334 N sing Y 335 N sing N 336 N sing Y 337 N doub N 338 N sing Y 339 N doub N 340 N sing Y 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N doub N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N doub N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N doub N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N doub N 429 N sing N 430 N sing N 431 N sing N 432 N sing Y 433 N doub Y 434 N sing Y 435 N sing N 436 N sing Y 437 N doub Y 438 N sing Y 439 N sing N 440 N sing Y 441 N sing Y 442 N doub N 443 N sing Y 444 N doub N 445 N sing Y 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N doub N 457 N sing N 458 N sing N 459 N sing N 460 N sing Y 461 N doub Y 462 N sing Y 463 N sing N 464 N sing Y 465 N doub N 466 N sing Y 467 N doub N 468 N sing Y 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N doub N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing US Biochemistry BICHAW 0033 0006-2960 50 4786 4795 10.1021/bi200033z 21446746 The L76V Drug Resistance Mutation Decreases the Dimer Stability and Rate of Autoprocessing of HIV-1 Protease by Reducing Internal Hydrophobic Contacts. 2011 10.2210/pdb3pwr/pdb pdb_00003pwr 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 100 1 CCD 2008-10-09 MARMOSAIC 300 mm CCD SI220CHANNEL SINGLE WAVELENGTH M x-ray 1 0.8 1.0 22-ID APS 0.8 SYNCHROTRON APS BEAMLINE 22-ID 10726.650 Protease 3.4.23.16 residues 501-599 Q7K, L33I, L63I, C67A, L76V, C95A 2 man polymer 670.841 (2S)-N-[(2S,3R)-4-[(2S,3S,4aS,8aS)-3-(tert-butylcarbamoyl)-3,4,4a,5,6,7,8,8a-octahydro-1H-isoquinolin-2-yl]-3-hydroxy-1 -phenyl-butan-2-yl]-2-(quinolin-2-ylcarbonylamino)butanediamide 1 syn non-polymer 35.453 CHLORIDE ION 1 syn non-polymer 92.094 GLYCEROL 8 syn non-polymer 18.015 water 182 nat water no no PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVVVGPT PVNIIGRNLLTQIGATLNF PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVVVGPT PVNIIGRNLLTQIGATLNF A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample pol 11676 Human immunodeficiency virus 1 562 Escherichia coli BL21(DE3) Plasmid pET11a 1 2.73 54.98 7.0 CRYSTAL WAS GROWN BY THE HANGING-DROP VAPOR-DIFFUSION METHOD AT ROOM TEMPERATURE, FROM A 7 MG/ML PROTEIN SOLUTION AT PH 7.0 WITH 1.3 M NACL, 0.1 M TRIS-HCL, 3% DMSO. THE INHIBITOR WAS MIXED WITH PROTEASE IN A RATIO 5:1, VAPOR DIFFUSION HANGING DROP, TEMPERATURE 298K, VAPOR DIFFUSION, HANGING DROP 298 software chem_comp chem_comp_atom chem_comp_bond database_2 entity pdbx_entity_nonpoly pdbx_initial_refinement_model struct_ref_seq_dif struct_site repository Initial release Version format compliance Other Refinement description Data collection Database references Derived calculations Refinement description Structure summary 1 0 2011-04-20 1 1 2011-07-13 1 2 2012-12-12 1 3 2017-11-08 1 4 2023-09-13 _software.name _chem_comp.name _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession _entity.pdbx_description _pdbx_entity_nonpoly.name _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Wild type HIV-1 protease complexed with saquinavir RCSB Y RCSB 2010-12-08 REL REL ROC (2S)-N-[(2S,3R)-4-[(2S,3S,4aS,8aS)-3-(tert-butylcarbamoyl)-3,4,4a,5,6,7,8,8a-octahydro-1H-isoquinolin-2-yl]-3-hydroxy-1 -phenyl-butan-2-yl]-2-(quinolin-2-ylcarbonylamino)butanediamide CL CHLORIDE ION GOL GLYCEROL HOH water 2NMY PDB experimental model Inhibitor Saquinavir Peptide-like ROC 401 2 ROC ROC 401 A CL 501 3 CL CL 402 A GOL 801 4 GOL GOL 403 A GOL 804 4 GOL GOL 404 A GOL 805 4 GOL GOL 405 A GOL 806 4 GOL GOL 406 A GOL 807 4 GOL GOL 407 A GOL 808 4 GOL GOL 408 A GOL 802 4 GOL GOL 201 B GOL 803 4 GOL GOL 202 B HOH 1002 5 HOH HOH 501 A HOH 1003 5 HOH HOH 502 A HOH 1004 5 HOH HOH 503 A HOH 1008 5 HOH HOH 504 A HOH 1009 5 HOH HOH 505 A HOH 1011 5 HOH HOH 506 A HOH 1012 5 HOH HOH 507 A HOH 1014 5 HOH HOH 508 A HOH 1017 5 HOH HOH 509 A HOH 1018 5 HOH HOH 510 A HOH 1020 5 HOH HOH 511 A HOH 1022 5 HOH HOH 512 A HOH 1025 5 HOH HOH 513 A HOH 1027 5 HOH HOH 514 A HOH 1032 5 HOH HOH 515 A HOH 1033 5 HOH HOH 516 A HOH 1035 5 HOH HOH 517 A HOH 1036 5 HOH HOH 518 A HOH 1039 5 HOH HOH 519 A HOH 1041 5 HOH HOH 520 A HOH 1042 5 HOH HOH 521 A HOH 1044 5 HOH HOH 522 A HOH 1045 5 HOH HOH 523 A HOH 1046 5 HOH HOH 524 A HOH 1049 5 HOH HOH 525 A HOH 1051 5 HOH HOH 526 A HOH 1052 5 HOH HOH 527 A HOH 1055 5 HOH HOH 528 A HOH 1057 5 HOH HOH 529 A HOH 1058 5 HOH HOH 530 A HOH 1059 5 HOH HOH 531 A HOH 1066 5 HOH HOH 532 A HOH 1067 5 HOH HOH 533 A HOH 1071 5 HOH HOH 534 A HOH 1075 5 HOH HOH 535 A HOH 1077 5 HOH HOH 536 A HOH 1078 5 HOH HOH 537 A HOH 1083 5 HOH HOH 538 A HOH 1084 5 HOH HOH 539 A HOH 1085 5 HOH HOH 540 A HOH 1086 5 HOH HOH 541 A HOH 1090 5 HOH HOH 542 A HOH 1092 5 HOH HOH 543 A HOH 1093 5 HOH HOH 544 A HOH 1096 5 HOH HOH 545 A HOH 1101 5 HOH HOH 546 A HOH 1103 5 HOH HOH 547 A HOH 1105 5 HOH HOH 548 A HOH 1107 5 HOH HOH 549 A HOH 1109 5 HOH HOH 550 A HOH 1110 5 HOH HOH 551 A HOH 1114 5 HOH HOH 552 A HOH 1116 5 HOH HOH 553 A HOH 1117 5 HOH HOH 554 A HOH 1120 5 HOH HOH 555 A HOH 1123 5 HOH HOH 556 A HOH 1127 5 HOH HOH 557 A HOH 1132 5 HOH HOH 558 A HOH 1134 5 HOH HOH 559 A HOH 1137 5 HOH HOH 560 A HOH 1141 5 HOH HOH 561 A HOH 1142 5 HOH HOH 562 A HOH 1143 5 HOH HOH 563 A HOH 1145 5 HOH HOH 564 A HOH 1148 5 HOH HOH 565 A HOH 1149 5 HOH HOH 566 A HOH 1150 5 HOH HOH 567 A HOH 1152 5 HOH HOH 568 A HOH 1153 5 HOH HOH 569 A HOH 1154 5 HOH HOH 570 A HOH 1155 5 HOH HOH 571 A HOH 1156 5 HOH HOH 572 A HOH 1160 5 HOH HOH 573 A HOH 1161 5 HOH HOH 574 A HOH 1165 5 HOH HOH 575 A HOH 1166 5 HOH HOH 576 A HOH 1167 5 HOH HOH 577 A HOH 1168 5 HOH HOH 578 A HOH 1169 5 HOH HOH 579 A HOH 1171 5 HOH HOH 580 A HOH 1172 5 HOH HOH 581 A HOH 1176 5 HOH HOH 582 A HOH 1177 5 HOH HOH 583 A HOH 1181 5 HOH HOH 584 A HOH 1000 5 HOH HOH 301 B HOH 1001 5 HOH HOH 302 B HOH 1005 5 HOH HOH 303 B HOH 1006 5 HOH HOH 304 B HOH 1007 5 HOH HOH 305 B HOH 1010 5 HOH HOH 306 B HOH 1013 5 HOH HOH 307 B HOH 1015 5 HOH HOH 308 B HOH 1016 5 HOH HOH 309 B HOH 1019 5 HOH HOH 310 B HOH 1021 5 HOH HOH 311 B HOH 1023 5 HOH HOH 312 B HOH 1024 5 HOH HOH 313 B HOH 1026 5 HOH HOH 314 B HOH 1028 5 HOH HOH 315 B HOH 1029 5 HOH HOH 316 B HOH 1030 5 HOH HOH 317 B HOH 1031 5 HOH HOH 318 B HOH 1034 5 HOH HOH 319 B HOH 1037 5 HOH HOH 320 B HOH 1038 5 HOH HOH 321 B HOH 1040 5 HOH HOH 322 B HOH 1043 5 HOH HOH 323 B HOH 1047 5 HOH HOH 324 B HOH 1048 5 HOH HOH 325 B HOH 1050 5 HOH HOH 326 B HOH 1053 5 HOH HOH 327 B HOH 1054 5 HOH HOH 328 B HOH 1056 5 HOH HOH 329 B HOH 1060 5 HOH HOH 330 B HOH 1061 5 HOH HOH 331 B HOH 1062 5 HOH HOH 332 B HOH 1063 5 HOH HOH 333 B HOH 1064 5 HOH HOH 334 B HOH 1065 5 HOH HOH 335 B HOH 1068 5 HOH HOH 336 B HOH 1069 5 HOH HOH 337 B HOH 1070 5 HOH HOH 338 B HOH 1072 5 HOH HOH 339 B HOH 1073 5 HOH HOH 340 B HOH 1074 5 HOH HOH 341 B HOH 1076 5 HOH HOH 342 B HOH 1079 5 HOH HOH 343 B HOH 1080 5 HOH HOH 344 B HOH 1081 5 HOH HOH 345 B HOH 1082 5 HOH HOH 346 B HOH 1087 5 HOH HOH 347 B HOH 1088 5 HOH HOH 348 B HOH 1089 5 HOH HOH 349 B HOH 1091 5 HOH HOH 350 B HOH 1094 5 HOH HOH 351 B HOH 1095 5 HOH HOH 352 B HOH 1097 5 HOH HOH 353 B HOH 1098 5 HOH HOH 354 B HOH 1099 5 HOH HOH 355 B HOH 1100 5 HOH HOH 356 B HOH 1102 5 HOH HOH 357 B HOH 1104 5 HOH HOH 358 B HOH 1106 5 HOH HOH 359 B HOH 1108 5 HOH HOH 360 B HOH 1111 5 HOH HOH 361 B HOH 1112 5 HOH HOH 362 B HOH 1113 5 HOH HOH 363 B HOH 1115 5 HOH HOH 364 B HOH 1118 5 HOH HOH 365 B HOH 1119 5 HOH HOH 366 B HOH 1121 5 HOH HOH 367 B HOH 1122 5 HOH HOH 368 B HOH 1124 5 HOH HOH 369 B HOH 1125 5 HOH HOH 370 B HOH 1126 5 HOH HOH 371 B HOH 1128 5 HOH HOH 372 B HOH 1129 5 HOH HOH 373 B HOH 1130 5 HOH HOH 374 B HOH 1131 5 HOH HOH 375 B HOH 1133 5 HOH HOH 376 B HOH 1135 5 HOH HOH 377 B HOH 1136 5 HOH HOH 378 B HOH 1138 5 HOH HOH 379 B HOH 1139 5 HOH HOH 380 B HOH 1140 5 HOH HOH 381 B HOH 1144 5 HOH HOH 382 B HOH 1146 5 HOH HOH 383 B HOH 1147 5 HOH HOH 384 B HOH 1151 5 HOH HOH 385 B HOH 1157 5 HOH HOH 386 B HOH 1158 5 HOH HOH 387 B HOH 1159 5 HOH HOH 388 B HOH 1162 5 HOH HOH 389 B HOH 1163 5 HOH HOH 390 B HOH 1164 5 HOH HOH 391 B HOH 1170 5 HOH HOH 392 B HOH 1173 5 HOH HOH 393 B HOH 1174 5 HOH HOH 394 B HOH 1175 5 HOH HOH 395 B HOH 1178 5 HOH HOH 396 B HOH 1179 5 HOH HOH 397 B HOH 1180 5 HOH HOH 398 B PRO 1 n 1 PRO 1 A GLN 2 n 2 GLN 2 A ILE 3 n 3 ILE 3 A THR 4 n 4 THR 4 A LEU 5 n 5 LEU 5 A TRP 6 n 6 TRP 6 A LYS 7 n 7 LYS 7 A ARG 8 n 8 ARG 8 A PRO 9 n 9 PRO 9 A LEU 10 n 10 LEU 10 A VAL 11 n 11 VAL 11 A THR 12 n 12 THR 12 A ILE 13 n 13 ILE 13 A LYS 14 n 14 LYS 14 A ILE 15 n 15 ILE 15 A GLY 16 n 16 GLY 16 A GLY 17 n 17 GLY 17 A GLN 18 n 18 GLN 18 A LEU 19 n 19 LEU 19 A LYS 20 n 20 LYS 20 A GLU 21 n 21 GLU 21 A ALA 22 n 22 ALA 22 A LEU 23 n 23 LEU 23 A LEU 24 n 24 LEU 24 A ASP 25 n 25 ASP 25 A THR 26 n 26 THR 26 A GLY 27 n 27 GLY 27 A ALA 28 n 28 ALA 28 A ASP 29 n 29 ASP 29 A ASP 30 n 30 ASP 30 A THR 31 n 31 THR 31 A VAL 32 n 32 VAL 32 A ILE 33 n 33 ILE 33 A GLU 34 n 34 GLU 34 A GLU 35 n 35 GLU 35 A MET 36 n 36 MET 36 A SER 37 n 37 SER 37 A LEU 38 n 38 LEU 38 A PRO 39 n 39 PRO 39 A GLY 40 n 40 GLY 40 A ARG 41 n 41 ARG 41 A TRP 42 n 42 TRP 42 A LYS 43 n 43 LYS 43 A PRO 44 n 44 PRO 44 A LYS 45 n 45 LYS 45 A MET 46 n 46 MET 46 A ILE 47 n 47 ILE 47 A GLY 48 n 48 GLY 48 A GLY 49 n 49 GLY 49 A ILE 50 n 50 ILE 50 A GLY 51 n 51 GLY 51 A GLY 52 n 52 GLY 52 A PHE 53 n 53 PHE 53 A ILE 54 n 54 ILE 54 A LYS 55 n 55 LYS 55 A VAL 56 n 56 VAL 56 A ARG 57 n 57 ARG 57 A GLN 58 n 58 GLN 58 A TYR 59 n 59 TYR 59 A ASP 60 n 60 ASP 60 A GLN 61 n 61 GLN 61 A ILE 62 n 62 ILE 62 A ILE 63 n 63 ILE 63 A ILE 64 n 64 ILE 64 A GLU 65 n 65 GLU 65 A ILE 66 n 66 ILE 66 A ALA 67 n 67 ALA 67 A GLY 68 n 68 GLY 68 A HIS 69 n 69 HIS 69 A LYS 70 n 70 LYS 70 A ALA 71 n 71 ALA 71 A ILE 72 n 72 ILE 72 A GLY 73 n 73 GLY 73 A THR 74 n 74 THR 74 A VAL 75 n 75 VAL 75 A VAL 76 n 76 VAL 76 A VAL 77 n 77 VAL 77 A GLY 78 n 78 GLY 78 A PRO 79 n 79 PRO 79 A THR 80 n 80 THR 80 A PRO 81 n 81 PRO 81 A VAL 82 n 82 VAL 82 A ASN 83 n 83 ASN 83 A ILE 84 n 84 ILE 84 A ILE 85 n 85 ILE 85 A GLY 86 n 86 GLY 86 A ARG 87 n 87 ARG 87 A ASN 88 n 88 ASN 88 A LEU 89 n 89 LEU 89 A LEU 90 n 90 LEU 90 A THR 91 n 91 THR 91 A GLN 92 n 92 GLN 92 A ILE 93 n 93 ILE 93 A GLY 94 n 94 GLY 94 A ALA 95 n 95 ALA 95 A THR 96 n 96 THR 96 A LEU 97 n 97 LEU 97 A ASN 98 n 98 ASN 98 A PHE 99 n 99 PHE 99 A PRO 101 n 1 PRO 101 B GLN 102 n 2 GLN 102 B ILE 103 n 3 ILE 103 B THR 104 n 4 THR 104 B LEU 105 n 5 LEU 105 B TRP 106 n 6 TRP 106 B LYS 107 n 7 LYS 107 B ARG 108 n 8 ARG 108 B PRO 109 n 9 PRO 109 B LEU 110 n 10 LEU 110 B VAL 111 n 11 VAL 111 B THR 112 n 12 THR 112 B ILE 113 n 13 ILE 113 B LYS 114 n 14 LYS 114 B ILE 115 n 15 ILE 115 B GLY 116 n 16 GLY 116 B GLY 117 n 17 GLY 117 B GLN 118 n 18 GLN 118 B LEU 119 n 19 LEU 119 B LYS 120 n 20 LYS 120 B GLU 121 n 21 GLU 121 B ALA 122 n 22 ALA 122 B LEU 123 n 23 LEU 123 B LEU 124 n 24 LEU 124 B ASP 125 n 25 ASP 125 B THR 126 n 26 THR 126 B GLY 127 n 27 GLY 127 B ALA 128 n 28 ALA 128 B ASP 129 n 29 ASP 129 B ASP 130 n 30 ASP 130 B THR 131 n 31 THR 131 B VAL 132 n 32 VAL 132 B ILE 133 n 33 ILE 133 B GLU 134 n 34 GLU 134 B GLU 135 n 35 GLU 135 B MET 136 n 36 MET 136 B SER 137 n 37 SER 137 B LEU 138 n 38 LEU 138 B PRO 139 n 39 PRO 139 B GLY 140 n 40 GLY 140 B ARG 141 n 41 ARG 141 B TRP 142 n 42 TRP 142 B LYS 143 n 43 LYS 143 B PRO 144 n 44 PRO 144 B LYS 145 n 45 LYS 145 B MET 146 n 46 MET 146 B ILE 147 n 47 ILE 147 B GLY 148 n 48 GLY 148 B GLY 149 n 49 GLY 149 B ILE 150 n 50 ILE 150 B GLY 151 n 51 GLY 151 B GLY 152 n 52 GLY 152 B PHE 153 n 53 PHE 153 B ILE 154 n 54 ILE 154 B LYS 155 n 55 LYS 155 B VAL 156 n 56 VAL 156 B ARG 157 n 57 ARG 157 B GLN 158 n 58 GLN 158 B TYR 159 n 59 TYR 159 B ASP 160 n 60 ASP 160 B GLN 161 n 61 GLN 161 B ILE 162 n 62 ILE 162 B ILE 163 n 63 ILE 163 B ILE 164 n 64 ILE 164 B GLU 165 n 65 GLU 165 B ILE 166 n 66 ILE 166 B ALA 167 n 67 ALA 167 B GLY 168 n 68 GLY 168 B HIS 169 n 69 HIS 169 B LYS 170 n 70 LYS 170 B ALA 171 n 71 ALA 171 B ILE 172 n 72 ILE 172 B GLY 173 n 73 GLY 173 B THR 174 n 74 THR 174 B VAL 175 n 75 VAL 175 B VAL 176 n 76 VAL 176 B VAL 177 n 77 VAL 177 B GLY 178 n 78 GLY 178 B PRO 179 n 79 PRO 179 B THR 180 n 80 THR 180 B PRO 181 n 81 PRO 181 B VAL 182 n 82 VAL 182 B ASN 183 n 83 ASN 183 B ILE 184 n 84 ILE 184 B ILE 185 n 85 ILE 185 B GLY 186 n 86 GLY 186 B ARG 187 n 87 ARG 187 B ASN 188 n 88 ASN 188 B LEU 189 n 89 LEU 189 B LEU 190 n 90 LEU 190 B THR 191 n 91 THR 191 B GLN 192 n 92 GLN 192 B ILE 193 n 93 ILE 193 B GLY 194 n 94 GLY 194 B ALA 195 n 95 ALA 195 B THR 196 n 96 THR 196 B LEU 197 n 97 LEU 197 B ASN 198 n 98 ASN 198 B PHE 199 n 99 PHE 199 B 0.133 0.148 0.130 0.145 0.182 0.197 1563 1899 5.000 5.000 31370 author_and_software_defined_assembly PISA 2 dimeric 3620 -22 9940 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 3 A N ILE 3 B O LEU 197 B O LEU 97 B O ASN 198 B O ASN 98 A N THR 96 A N THR 96 A N LEU 97 A N LEU 97 B O ILE 103 B O ILE 3 A N LYS 43 A N LYS 43 A O GLN 58 A O GLN 58 A N ILE 66 A N ILE 66 A O HIS 69 A O HIS 69 A O VAL 76 A O VAL 76 A N ILE 33 A N ILE 33 A N VAL 32 A N VAL 32 A O ILE 84 A O ILE 84 A O ILE 85 A O ILE 85 A N LEU 23 A N LEU 23 A O LYS 20 A O LYS 20 A N ILE 13 A N ILE 13 A N LYS 14 A N LYS 14 A O GLU 65 A O GLU 65 B N LYS 143 B N LYS 43 B O GLN 158 B O GLN 58 B N ILE 166 B N ILE 66 B O HIS 169 B O HIS 69 B O VAL 176 B O VAL 76 B N ILE 133 B N ILE 33 B N VAL 132 B N VAL 32 B O ILE 184 B O ILE 84 B O ILE 185 B O ILE 85 B N LEU 123 B N LEU 23 B O LYS 120 B O LYS 20 B N ILE 113 B N ILE 13 B N LYS 114 B N LYS 14 B O GLU 165 B O GLU 65 1 A ALA 67 34.20 53.79 ANISOTROPIC REFINEMENT 0.197 0.148 0.145 1.45 10.00 17050 1899 38108 10395 5.000 90.1 RANDOM 1 FREE R 0.000 MOLECULAR REPLACEMENT 2NMY ENGH AND HUBER 12 1648.00 1732.74 1.45 10.00 182 1790 98 0 1510 0.010 0.030 0.000 0.030 0.052 0.062 0.000 0.003 0.000 0.090 1.450 50.000 3PWR 38308 0.000 0.06400 1 27.3000 6.600 90.1 0.48000 1.45 1.50 2.200 1 3.80 56.4 data collection MAR345 phasing MOLREP refinement SHELXL-97 data reduction HKL-2000 data scaling HKL-2000 HIV-1 Protease Mutant L76V complexed with Saquinavir 1 N N 1 N N 2 N N 3 N N 4 N N 4 N N 4 N N 4 N N 4 N N 4 N N 4 N N 4 N N 5 N N 5 N N A GLY 86 A GLY 86 HELX_P A THR 91 A THR 91 1 1 6 A GLN 92 A GLN 92 HELX_P A GLY 94 A GLY 94 5 2 3 B GLY 186 B GLY 86 HELX_P B THR 191 B THR 91 1 3 6 HYDROLASE/HYDROLASE INHIBITOR HIV-1, protease, mutation L76V, saquinavir, HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR complex POL_HV1BR UNP 1 501 P03367 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF 501 599 3PWR 1 99 P03367 A 1 1 99 501 599 3PWR 101 199 P03367 B 1 1 99 1 GLN engineered mutation LYS 7 3PWR A P03367 UNP 507 7 1 LEU engineered mutation ILE 33 3PWR A P03367 UNP 533 33 1 LEU engineered mutation ILE 63 3PWR A P03367 UNP 563 63 1 CYS engineered mutation ALA 67 3PWR A P03367 UNP 567 67 1 LEU engineered mutation VAL 76 3PWR A P03367 UNP 576 76 1 CYS engineered mutation ALA 95 3PWR A P03367 UNP 595 95 2 GLN engineered mutation LYS 107 3PWR B P03367 UNP 507 7 2 LEU engineered mutation ILE 133 3PWR B P03367 UNP 533 33 2 LEU engineered mutation ILE 163 3PWR B P03367 UNP 563 63 2 CYS engineered mutation ALA 167 3PWR B P03367 UNP 567 67 2 LEU engineered mutation VAL 176 3PWR B P03367 UNP 576 76 2 CYS engineered mutation ALA 195 3PWR B P03367 UNP 595 95 4 8 8 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel A GLN 2 A GLN 2 A ILE 3 A ILE 3 B THR 196 B THR 96 B ASN 198 B ASN 98 A THR 96 A THR 96 A ASN 98 A ASN 98 B GLN 102 B GLN 2 B ILE 103 B ILE 3 A LYS 43 A LYS 43 A GLY 49 A GLY 49 A GLY 52 A GLY 52 A ILE 66 A ILE 66 A HIS 69 A HIS 69 A VAL 77 A VAL 77 A VAL 32 A VAL 32 A ILE 33 A ILE 33 A ILE 84 A ILE 84 A ILE 85 A ILE 85 A GLN 18 A GLN 18 A LEU 24 A LEU 24 A LEU 10 A LEU 10 A ILE 15 A ILE 15 A GLY 52 A GLY 52 A ILE 66 A ILE 66 B LYS 143 B LYS 43 B GLY 149 B GLY 49 B GLY 152 B GLY 52 B ILE 166 B ILE 66 B HIS 169 B HIS 69 B VAL 177 B VAL 77 B VAL 132 B VAL 32 B ILE 133 B ILE 33 B ILE 184 B ILE 84 B ILE 185 B ILE 85 B GLN 118 B GLN 18 B LEU 124 B LEU 24 B LEU 110 B LEU 10 B ILE 115 B ILE 15 B GLY 152 B GLY 52 B ILE 166 B ILE 66 BINDING SITE FOR RESIDUE ROC A 401 A ROC 401 Software 26 BINDING SITE FOR RESIDUE CL A 501 Software 3 BINDING SITE FOR RESIDUE GOL A 801 Software 5 BINDING SITE FOR RESIDUE GOL A 804 Software 6 BINDING SITE FOR RESIDUE GOL A 805 Software 4 BINDING SITE FOR RESIDUE GOL A 806 Software 3 BINDING SITE FOR RESIDUE GOL A 807 Software 5 BINDING SITE FOR RESIDUE GOL A 808 Software 4 BINDING SITE FOR RESIDUE GOL B 802 Software 5 BINDING SITE FOR RESIDUE GOL B 803 Software 3 A TRP 6 A TRP 6 26 4_456 A ARG 8 A ARG 8 26 1_555 A ASP 25 A ASP 25 26 1_555 A GLY 27 A GLY 27 26 1_555 A ALA 28 A ALA 28 26 1_555 A ASP 29 A ASP 29 26 1_555 A ASP 30 A ASP 30 26 1_555 A GLY 48 A GLY 48 26 1_555 A GLY 49 A GLY 49 26 1_555 A ILE 50 A ILE 50 26 1_555 A THR 80 A THR 80 26 1_555 A PRO 81 A PRO 81 26 1_555 A ILE 84 A ILE 84 26 1_555 B ARG 108 B ARG 8 26 1_555 B ASP 125 B ASP 25 26 1_555 B GLY 127 B GLY 27 26 1_555 B ALA 128 B ALA 28 26 1_555 B ASP 129 B ASP 29 26 1_555 B ASP 130 B ASP 30 26 1_555 B ILE 147 B ILE 47 26 1_555 B GLY 148 B GLY 48 26 1_555 B GLY 149 B GLY 49 26 1_555 B ILE 150 B ILE 50 26 1_555 B PRO 181 B PRO 81 26 1_555 B VAL 182 B VAL 82 26 1_555 B ILE 184 B ILE 84 26 1_555 A THR 74 A THR 74 3 1_555 A ASN 88 A ASN 88 3 1_555 B ARG 141 B ARG 41 3 3_546 A THR 4 A THR 4 5 1_555 A LEU 5 A LEU 5 5 1_555 A TRP 6 A TRP 6 5 1_555 B THR 191 B THR 91 5 1_555 B ALA 195 B ALA 95 5 1_555 A PRO 39 A PRO 39 6 1_555 A GLY 40 A GLY 40 6 1_555 A ARG 41 A ARG 41 6 1_555 A TYR 59 A TYR 59 6 1_555 A ASP 60 A ASP 60 6 1_555 A GLN 61 A GLN 61 6 1_555 A ASP 29 A ASP 29 4 1_555 A ASP 30 A ASP 30 4 1_555 A THR 74 A THR 74 4 1_555 A ASN 88 A ASN 88 4 1_555 A ASP 29 A ASP 29 3 1_555 A ARG 87 A ARG 87 3 1_555 B TRP 106 B TRP 6 3 1_555 A ILE 15 A ILE 15 5 1_555 A GLY 16 A GLY 16 5 1_555 A GLN 61 A GLN 61 5 1_555 A ILE 62 A ILE 62 5 1_555 A ILE 63 A ILE 63 5 1_555 A ASP 29 A ASP 29 4 1_555 A ILE 47 A ILE 47 4 1_555 A GLY 48 A GLY 48 4 1_555 A ROC 401 C ROC 4 1_555 B GLY 116 B GLY 16 5 1_555 B LEU 138 B LEU 38 5 1_555 B PRO 139 B PRO 39 5 1_555 B ILE 162 B ILE 62 5 1_555 B ILE 163 B ILE 63 5 1_555 A TRP 6 A TRP 6 3 1_555 B ASP 129 B ASP 29 3 1_555 B ARG 187 B ARG 87 3 1_555 18 P 21 21 2