0.025031
0.000000
0.001045
0.000000
0.013392
0.000000
0.000000
0.000000
0.023090
0.00000
0.00000
0.00000
Ramagopal, U.A.
Guo, H.
Samanta, D.
Nathenson, S.G.
Almo, S.C.
New York Structural Genomics Research Consortium (NYSGRC)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
92.39
90.00
39.951
74.671
43.346
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
To be published
0353
Structure of T-cell immunoreceptor with immunoglobulin and ITIM domains (TIGIT)
10.2210/pdb3q0h/pdb
pdb_00003q0h
100
1
CCD
2010-07-15
ADSC QUANTUM 315
SINGLE WAVELENGTH
x-ray
1
0.9793
1.0
X29A
NSLS
0.9793
SYNCHROTRON
NSLS BEAMLINE X29A
12716.206
T cell immunoreceptor with Ig and ITIM domains
Ig-like V-type domain residues 22-137
2
man
polymer
18.015
water
120
nat
water
V-set and immunoglobulin domain-containing protein 9, V-set and transmembrane domain-containing protein 3
no
no
MMMTGTIETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLTV
NDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAEHGAR
MMMTGTIETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLTV
NDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAEHGAR
A,B
NYSGRC-006165
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
TIGIT, VSIG9, VSTM3
9606
Homo sapiens
469008
Escherichia coli
BL21(DE3)
plasmid
pET3a
1
2.54
51.57
VAPOR DIFFUSION, SITTING DROP
6.0
1.3M Ammonium Sulfate, 0.1M MES pH 6.0, Vapor diffusion, Sitting drop, temperature 298K
298
New York Structural Genomics Research Consortium
NYSGRC
PSI:Biology
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
repository
Initial release
Version format compliance
Refinement description
Data collection
Database references
Refinement description
1
0
2011-02-16
1
1
2011-07-13
1
2
2017-11-08
1
3
2023-09-13
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
Y
RCSB
Y
RCSB
2010-12-15
REL
REL
HOH
water
1IKF
PDB
experimental model
HOH
138
2
HOH
HOH
138
A
HOH
139
2
HOH
HOH
139
A
HOH
140
2
HOH
HOH
140
A
HOH
141
2
HOH
HOH
141
A
HOH
142
2
HOH
HOH
142
A
HOH
143
2
HOH
HOH
143
A
HOH
144
2
HOH
HOH
144
A
HOH
145
2
HOH
HOH
145
A
HOH
146
2
HOH
HOH
146
A
HOH
147
2
HOH
HOH
147
A
HOH
148
2
HOH
HOH
148
A
HOH
149
2
HOH
HOH
149
A
HOH
150
2
HOH
HOH
150
A
HOH
151
2
HOH
HOH
151
A
HOH
152
2
HOH
HOH
152
A
HOH
153
2
HOH
HOH
153
A
HOH
154
2
HOH
HOH
154
A
HOH
155
2
HOH
HOH
155
A
HOH
156
2
HOH
HOH
156
A
HOH
157
2
HOH
HOH
157
A
HOH
158
2
HOH
HOH
158
A
HOH
159
2
HOH
HOH
159
A
HOH
160
2
HOH
HOH
160
A
HOH
161
2
HOH
HOH
161
A
HOH
162
2
HOH
HOH
162
A
HOH
163
2
HOH
HOH
163
A
HOH
164
2
HOH
HOH
164
A
HOH
165
2
HOH
HOH
165
A
HOH
166
2
HOH
HOH
166
A
HOH
167
2
HOH
HOH
167
A
HOH
168
2
HOH
HOH
168
A
HOH
169
2
HOH
HOH
169
A
HOH
170
2
HOH
HOH
170
A
HOH
171
2
HOH
HOH
171
A
HOH
172
2
HOH
HOH
172
A
HOH
173
2
HOH
HOH
173
A
HOH
174
2
HOH
HOH
174
A
HOH
175
2
HOH
HOH
175
A
HOH
176
2
HOH
HOH
176
A
HOH
177
2
HOH
HOH
177
A
HOH
178
2
HOH
HOH
178
A
HOH
179
2
HOH
HOH
179
A
HOH
180
2
HOH
HOH
180
A
HOH
181
2
HOH
HOH
181
A
HOH
182
2
HOH
HOH
182
A
HOH
183
2
HOH
HOH
183
A
HOH
117
2
HOH
HOH
184
A
HOH
118
2
HOH
HOH
185
A
HOH
119
2
HOH
HOH
186
A
HOH
120
2
HOH
HOH
187
A
HOH
121
2
HOH
HOH
188
A
HOH
122
2
HOH
HOH
189
A
HOH
123
2
HOH
HOH
190
A
HOH
124
2
HOH
HOH
191
A
HOH
125
2
HOH
HOH
192
A
HOH
126
2
HOH
HOH
193
A
HOH
127
2
HOH
HOH
194
A
HOH
128
2
HOH
HOH
195
A
HOH
129
2
HOH
HOH
196
A
HOH
130
2
HOH
HOH
197
A
HOH
131
2
HOH
HOH
198
A
HOH
132
2
HOH
HOH
199
A
HOH
133
2
HOH
HOH
200
A
HOH
134
2
HOH
HOH
201
A
HOH
135
2
HOH
HOH
202
A
HOH
136
2
HOH
HOH
203
A
HOH
137
2
HOH
HOH
204
A
HOH
138
2
HOH
HOH
138
B
HOH
139
2
HOH
HOH
139
B
HOH
140
2
HOH
HOH
140
B
HOH
141
2
HOH
HOH
141
B
HOH
142
2
HOH
HOH
142
B
HOH
143
2
HOH
HOH
143
B
HOH
144
2
HOH
HOH
144
B
HOH
145
2
HOH
HOH
145
B
HOH
146
2
HOH
HOH
146
B
HOH
147
2
HOH
HOH
147
B
HOH
148
2
HOH
HOH
148
B
HOH
149
2
HOH
HOH
149
B
HOH
150
2
HOH
HOH
150
B
HOH
151
2
HOH
HOH
151
B
HOH
152
2
HOH
HOH
152
B
HOH
153
2
HOH
HOH
153
B
HOH
154
2
HOH
HOH
154
B
HOH
155
2
HOH
HOH
155
B
HOH
156
2
HOH
HOH
156
B
HOH
157
2
HOH
HOH
157
B
HOH
158
2
HOH
HOH
158
B
HOH
159
2
HOH
HOH
159
B
HOH
160
2
HOH
HOH
160
B
HOH
161
2
HOH
HOH
161
B
HOH
162
2
HOH
HOH
162
B
HOH
163
2
HOH
HOH
163
B
HOH
164
2
HOH
HOH
164
B
HOH
165
2
HOH
HOH
165
B
HOH
166
2
HOH
HOH
166
B
HOH
167
2
HOH
HOH
167
B
HOH
168
2
HOH
HOH
168
B
HOH
169
2
HOH
HOH
169
B
HOH
117
2
HOH
HOH
170
B
HOH
118
2
HOH
HOH
171
B
HOH
119
2
HOH
HOH
172
B
HOH
120
2
HOH
HOH
173
B
HOH
121
2
HOH
HOH
174
B
HOH
122
2
HOH
HOH
175
B
HOH
123
2
HOH
HOH
176
B
HOH
124
2
HOH
HOH
177
B
HOH
125
2
HOH
HOH
178
B
HOH
126
2
HOH
HOH
179
B
HOH
127
2
HOH
HOH
180
B
HOH
128
2
HOH
HOH
181
B
HOH
129
2
HOH
HOH
182
B
HOH
130
2
HOH
HOH
183
B
HOH
131
2
HOH
HOH
184
B
HOH
132
2
HOH
HOH
185
B
HOH
133
2
HOH
HOH
186
B
HOH
134
2
HOH
HOH
187
B
HOH
135
2
HOH
HOH
188
B
HOH
136
2
HOH
HOH
189
B
HOH
137
2
HOH
HOH
190
B
MET
21
n
1
MET
21
A
MET
22
n
2
MET
22
A
MET
23
n
3
MET
23
A
THR
24
n
4
THR
24
A
GLY
25
n
5
GLY
25
A
THR
26
n
6
THR
26
A
ILE
27
n
7
ILE
27
A
GLU
28
n
8
GLU
28
A
THR
29
n
9
THR
29
A
THR
30
n
10
THR
30
A
GLY
31
n
11
GLY
31
A
ASN
32
n
12
ASN
32
A
ILE
33
n
13
ILE
33
A
SER
34
n
14
SER
34
A
ALA
35
n
15
ALA
35
A
GLU
36
n
16
GLU
36
A
LYS
37
n
17
LYS
37
A
GLY
38
n
18
GLY
38
A
GLY
39
n
19
GLY
39
A
SER
40
n
20
SER
40
A
ILE
41
n
21
ILE
41
A
ILE
42
n
22
ILE
42
A
LEU
43
n
23
LEU
43
A
GLN
44
n
24
GLN
44
A
CYS
45
n
25
CYS
45
A
HIS
46
n
26
HIS
46
A
LEU
47
n
27
LEU
47
A
SER
48
n
28
SER
48
A
SER
49
n
29
SER
49
A
THR
50
n
30
THR
50
A
THR
51
n
31
THR
51
A
ALA
52
n
32
ALA
52
A
GLN
53
n
33
GLN
53
A
VAL
54
n
34
VAL
54
A
THR
55
n
35
THR
55
A
GLN
56
n
36
GLN
56
A
VAL
57
n
37
VAL
57
A
ASN
58
n
38
ASN
58
A
TRP
59
n
39
TRP
59
A
GLU
60
n
40
GLU
60
A
GLN
61
n
41
GLN
61
A
GLN
62
n
42
GLN
62
A
ASP
63
n
43
ASP
63
A
GLN
64
n
44
GLN
64
A
LEU
65
n
45
LEU
65
A
LEU
66
n
46
LEU
66
A
ALA
67
n
47
ALA
67
A
ILE
68
n
48
ILE
68
A
CYS
69
n
49
CYS
69
A
ASN
70
n
50
ASN
70
A
ALA
71
n
51
ALA
71
A
ASP
72
n
52
ASP
72
A
LEU
73
n
53
LEU
73
A
GLY
74
n
54
GLY
74
A
TRP
75
n
55
TRP
75
A
HIS
76
n
56
HIS
76
A
ILE
77
n
57
ILE
77
A
SER
78
n
58
SER
78
A
PRO
79
n
59
PRO
79
A
SER
80
n
60
SER
80
A
PHE
81
n
61
PHE
81
A
LYS
82
n
62
LYS
82
A
ASP
83
n
63
ASP
83
A
ARG
84
n
64
ARG
84
A
VAL
85
n
65
VAL
85
A
ALA
86
n
66
ALA
86
A
PRO
87
n
67
PRO
87
A
GLY
88
n
68
GLY
88
A
PRO
89
n
69
PRO
89
A
GLY
90
n
70
GLY
90
A
LEU
91
n
71
LEU
91
A
GLY
92
n
72
GLY
92
A
LEU
93
n
73
LEU
93
A
THR
94
n
74
THR
94
A
LEU
95
n
75
LEU
95
A
GLN
96
n
76
GLN
96
A
SER
97
n
77
SER
97
A
LEU
98
n
78
LEU
98
A
THR
99
n
79
THR
99
A
VAL
100
n
80
VAL
100
A
ASN
101
n
81
ASN
101
A
ASP
102
n
82
ASP
102
A
THR
103
n
83
THR
103
A
GLY
104
n
84
GLY
104
A
GLU
105
n
85
GLU
105
A
TYR
106
n
86
TYR
106
A
PHE
107
n
87
PHE
107
A
CYS
108
n
88
CYS
108
A
ILE
109
n
89
ILE
109
A
TYR
110
n
90
TYR
110
A
HIS
111
n
91
HIS
111
A
THR
112
n
92
THR
112
A
TYR
113
n
93
TYR
113
A
PRO
114
n
94
PRO
114
A
ASP
115
n
95
ASP
115
A
GLY
116
n
96
GLY
116
A
THR
117
n
97
THR
117
A
TYR
118
n
98
TYR
118
A
THR
119
n
99
THR
119
A
GLY
120
n
100
GLY
120
A
ARG
121
n
101
ARG
121
A
ILE
122
n
102
ILE
122
A
PHE
123
n
103
PHE
123
A
LEU
124
n
104
LEU
124
A
GLU
125
n
105
GLU
125
A
VAL
126
n
106
VAL
126
A
LEU
127
n
107
LEU
127
A
GLU
128
n
108
GLU
128
A
SER
129
n
109
SER
129
A
n
110
130
A
n
111
131
A
n
112
132
A
n
113
133
A
n
114
134
A
n
115
135
A
n
116
136
A
n
117
137
A
n
1
21
B
n
2
22
B
n
3
23
B
n
4
24
B
GLY
25
n
5
GLY
25
B
THR
26
n
6
THR
26
B
ILE
27
n
7
ILE
27
B
GLU
28
n
8
GLU
28
B
THR
29
n
9
THR
29
B
THR
30
n
10
THR
30
B
GLY
31
n
11
GLY
31
B
ASN
32
n
12
ASN
32
B
ILE
33
n
13
ILE
33
B
SER
34
n
14
SER
34
B
ALA
35
n
15
ALA
35
B
GLU
36
n
16
GLU
36
B
LYS
37
n
17
LYS
37
B
GLY
38
n
18
GLY
38
B
GLY
39
n
19
GLY
39
B
SER
40
n
20
SER
40
B
ILE
41
n
21
ILE
41
B
ILE
42
n
22
ILE
42
B
LEU
43
n
23
LEU
43
B
GLN
44
n
24
GLN
44
B
CYS
45
n
25
CYS
45
B
HIS
46
n
26
HIS
46
B
LEU
47
n
27
LEU
47
B
SER
48
n
28
SER
48
B
SER
49
n
29
SER
49
B
THR
50
n
30
THR
50
B
THR
51
n
31
THR
51
B
ALA
52
n
32
ALA
52
B
GLN
53
n
33
GLN
53
B
VAL
54
n
34
VAL
54
B
THR
55
n
35
THR
55
B
GLN
56
n
36
GLN
56
B
VAL
57
n
37
VAL
57
B
ASN
58
n
38
ASN
58
B
TRP
59
n
39
TRP
59
B
GLU
60
n
40
GLU
60
B
GLN
61
n
41
GLN
61
B
GLN
62
n
42
GLN
62
B
ASP
63
n
43
ASP
63
B
GLN
64
n
44
GLN
64
B
LEU
65
n
45
LEU
65
B
LEU
66
n
46
LEU
66
B
ALA
67
n
47
ALA
67
B
ILE
68
n
48
ILE
68
B
CYS
69
n
49
CYS
69
B
ASN
70
n
50
ASN
70
B
ALA
71
n
51
ALA
71
B
ASP
72
n
52
ASP
72
B
LEU
73
n
53
LEU
73
B
GLY
74
n
54
GLY
74
B
TRP
75
n
55
TRP
75
B
HIS
76
n
56
HIS
76
B
ILE
77
n
57
ILE
77
B
SER
78
n
58
SER
78
B
PRO
79
n
59
PRO
79
B
SER
80
n
60
SER
80
B
PHE
81
n
61
PHE
81
B
LYS
82
n
62
LYS
82
B
ASP
83
n
63
ASP
83
B
ARG
84
n
64
ARG
84
B
VAL
85
n
65
VAL
85
B
ALA
86
n
66
ALA
86
B
PRO
87
n
67
PRO
87
B
GLY
88
n
68
GLY
88
B
PRO
89
n
69
PRO
89
B
GLY
90
n
70
GLY
90
B
LEU
91
n
71
LEU
91
B
GLY
92
n
72
GLY
92
B
LEU
93
n
73
LEU
93
B
THR
94
n
74
THR
94
B
LEU
95
n
75
LEU
95
B
GLN
96
n
76
GLN
96
B
SER
97
n
77
SER
97
B
LEU
98
n
78
LEU
98
B
THR
99
n
79
THR
99
B
VAL
100
n
80
VAL
100
B
ASN
101
n
81
ASN
101
B
ASP
102
n
82
ASP
102
B
THR
103
n
83
THR
103
B
GLY
104
n
84
GLY
104
B
GLU
105
n
85
GLU
105
B
TYR
106
n
86
TYR
106
B
PHE
107
n
87
PHE
107
B
CYS
108
n
88
CYS
108
B
ILE
109
n
89
ILE
109
B
TYR
110
n
90
TYR
110
B
HIS
111
n
91
HIS
111
B
THR
112
n
92
THR
112
B
TYR
113
n
93
TYR
113
B
PRO
114
n
94
PRO
114
B
ASP
115
n
95
ASP
115
B
GLY
116
n
96
GLY
116
B
THR
117
n
97
THR
117
B
TYR
118
n
98
TYR
118
B
THR
119
n
99
THR
119
B
GLY
120
n
100
GLY
120
B
ARG
121
n
101
ARG
121
B
ILE
122
n
102
ILE
122
B
PHE
123
n
103
PHE
123
B
LEU
124
n
104
LEU
124
B
GLU
125
n
105
GLU
125
B
VAL
126
n
106
VAL
126
B
LEU
127
n
107
LEU
127
B
GLU
128
n
108
GLU
128
B
SER
129
n
109
SER
129
B
SER
130
n
110
SER
130
B
VAL
131
n
111
VAL
131
B
n
112
132
B
n
113
133
B
n
114
134
B
n
115
135
B
n
116
136
B
n
117
137
B
1.3745
-0.3686
-0.2802
2.3888
-0.7259
1.0475
-0.0642
-0.0097
0.0614
0.1596
0.0046
-0.1984
-0.0148
0.0352
0.0595
0.0426
0.0165
-0.0580
0.0666
0.0083
0.1015
refined
-3.8080
-13.6700
29.8070
X-RAY DIFFRACTION
1.5741
0.5091
0.4970
1.6573
-0.6509
2.2492
0.0047
-0.0808
-0.0448
-0.0503
0.0085
0.0143
0.0421
0.0539
-0.0132
0.0658
0.0152
0.0325
0.0644
0.0090
0.0502
refined
8.6920
6.4450
19.5710
X-RAY DIFFRACTION
A
-10
A
9999
X-RAY DIFFRACTION
1
B
-10
B
9999
X-RAY DIFFRACTION
2
software_defined_assembly
PISA
1
monomeric
software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLU
28
A
N
GLU
8
A
O
HIS
46
A
O
HIS
26
A
N
ALA
35
A
N
ALA
15
A
O
GLU
125
A
O
GLU
105
A
O
TYR
118
A
O
TYR
98
A
N
TYR
110
A
N
TYR
90
A
O
PHE
107
A
O
PHE
87
A
N
GLU
60
A
N
GLU
40
A
N
TRP
59
A
N
TRP
39
A
O
LEU
66
A
O
LEU
46
A
N
ILE
68
A
N
ILE
48
A
O
HIS
76
A
O
HIS
56
A
N
LEU
43
A
N
LEU
23
A
O
LEU
93
A
O
LEU
73
A
O
THR
94
A
O
THR
74
A
N
ALA
86
A
N
ALA
66
B
N
GLU
28
B
N
GLU
8
B
O
HIS
46
B
O
HIS
26
B
N
ALA
35
B
N
ALA
15
B
O
LEU
127
B
O
LEU
107
B
O
ILE
122
B
O
ILE
102
B
N
TYR
106
B
N
TYR
86
B
O
ILE
109
B
O
ILE
89
B
N
ASN
58
B
N
ASN
38
B
N
TRP
59
B
N
TRP
39
B
O
LEU
66
B
O
LEU
46
B
N
ILE
68
B
N
ILE
48
B
O
HIS
76
B
O
HIS
56
B
N
LEU
43
B
N
LEU
23
B
O
LEU
93
B
O
LEU
73
B
O
THR
94
B
O
THR
74
B
N
ALA
86
B
N
ALA
66
1
A
SER
130
A
SER
110
1
Y
1
A
VAL
131
A
VAL
111
1
Y
1
A
ALA
132
A
ALA
112
1
Y
1
A
GLU
133
A
GLU
113
1
Y
1
A
HIS
134
A
HIS
114
1
Y
1
A
GLY
135
A
GLY
115
1
Y
1
A
ALA
136
A
ALA
116
1
Y
1
A
ARG
137
A
ARG
117
1
Y
1
B
MET
21
B
MET
1
1
Y
1
B
MET
22
B
MET
2
1
Y
1
B
MET
23
B
MET
3
1
Y
1
B
THR
24
B
THR
4
1
Y
1
B
ALA
132
B
ALA
112
1
Y
1
B
GLU
133
B
GLU
113
1
Y
1
B
HIS
134
B
HIS
114
1
Y
1
B
GLY
135
B
GLY
115
1
Y
1
B
ALA
136
B
ALA
116
1
Y
1
B
ARG
137
B
ARG
117
1
Y
1
6.78
1.10
114.20
120.98
A
A
A
CA
CB
SG
CYS
CYS
CYS
69
69
69
N
1
A
A
CB
SG
CYS
CYS
69
69
0.109
0.017
1.818
1.927
N
1
A
ASP
63
31.78
43.43
1
A
ASP
63
31.78
44.78
1
B
ARG
84
B
-140.04
31.38
52.630
18.6664
6.770
0.1500
0.0000
0.2100
-0.0900
0.0000
-0.0400
0.9350
0.9130
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : WITH TLS ADDED
UNKNOWN DENSITY NEAR CYS48: NOT MODELED
0.2370
0.2072
0.2087
1.7000
43.3100
1376
27504
5.0000
98.2200
0.2596
0.2242
1.000
0.300
0.8529
4.2220
0.0660
0.1146
0.1106
RANDOM
1
THROUGHOUT
0.000
MIR
0.115
0.1110
0.8000
0.8000
1.4000
1IKF
MAXIMUM LIKELIHOOD
MASK
1.7000
43.3100
120
1768
0
0
1648
0.015
0.021
1812
1.678
1.943
2495
7.027
5.000
242
39.235
25.641
78
15.661
15.000
289
15.852
15.000
5
0.116
0.200
287
0.008
0.021
1407
0.939
1.500
1149
1.782
2.000
1883
2.799
3.000
663
4.412
4.500
612
0.2180
0.2180
1.7440
80
1675
1755
20
84.0100
14.1
1.700
50.000
3Q0H
27916
0.038
0.937
1
16.400
7.300
99.700
0.535
1.700
1.730
1413
0.859
1
7.100
100.000
0.481
1.730
1.760
1382
0.889
1
7.100
99.900
0.372
1.760
1.790
1393
0.894
1
7.200
99.900
0.300
1.790
1.830
1380
0.931
1
7.200
100.000
0.226
1.830
1.870
1401
0.948
1
7.200
100.000
0.169
1.870
1.910
1411
0.964
1
7.200
100.000
0.132
1.910
1.960
1380
1.013
1
7.200
100.000
0.110
1.960
2.020
1397
1.015
1
7.200
100.000
0.092
2.020
2.070
1407
1.026
1
7.200
100.000
0.082
2.070
2.140
1393
0.976
1
7.300
100.000
0.072
2.140
2.220
1388
1.045
1
7.300
100.000
0.063
2.220
2.310
1398
1.003
1
7.400
100.000
0.059
2.310
2.410
1405
1.044
1
7.400
100.000
0.052
2.410
2.540
1392
0.981
1
7.400
100.000
0.043
2.540
2.700
1404
0.896
1
7.400
100.000
0.038
2.700
2.910
1389
0.935
1
7.400
100.000
0.037
2.910
3.200
1407
1.056
1
7.300
100.000
0.031
3.200
3.660
1405
0.875
1
7.400
99.800
0.026
3.660
4.610
1399
0.729
1
7.300
99.300
0.027
4.610
50.000
1372
0.637
1
7.200
94.500
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
program
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
data collection
CBASS
data reduction
HKL-2000
phasing
PHASER
Structure of T-cell immunoreceptor with immunoglobulin and ITIM domains (TIGIT)
1
N
N
1
N
N
2
N
N
2
N
N
A
SER
78
A
SER
58
HELX_P
A
LYS
82
A
LYS
62
5
1
5
A
THR
99
A
THR
79
HELX_P
A
THR
103
A
THR
83
5
2
5
B
PHE
81
B
PHE
61
HELX_P
B
ASP
83
B
ASP
63
5
3
3
B
THR
99
B
THR
79
HELX_P
B
THR
103
B
THR
83
5
4
5
disulf
2.053
A
CYS
45
A
SG
CYS
25
1_555
A
CYS
108
A
SG
CYS
88
1_555
disulf
2.055
B
CYS
45
B
SG
CYS
25
1_555
B
CYS
108
B
SG
CYS
88
1_555
IMMUNE SYSTEM
Immune receptor, adhesion, Structural Genomics, New York Structural Genomics Research Consortium, NYSGRC, PSI-BIOLOGY, IMMUNE SYSTEM
A
GLY
88
A
GLY
68
1
A
PRO
89
A
PRO
69
2.16
A
TYR
113
A
TYR
93
1
A
PRO
114
A
PRO
94
2.54
B
GLY
88
B
GLY
68
1
B
PRO
89
B
PRO
69
2.42
B
TYR
113
B
TYR
93
1
B
PRO
114
B
PRO
94
-1.38
TIGIT_HUMAN
UNP
1
22
Q495A1
MMTGTIETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLTVN
DTGEYFCIYHTYPDGTYTGRIFLEVLESSVAEHGAR
22
137
3Q0H
22
137
Q495A1
A
1
2
117
22
137
3Q0H
22
137
Q495A1
B
1
2
117
1
expression tag
MET
21
3Q0H
A
Q495A1
UNP
1
2
expression tag
MET
21
3Q0H
B
Q495A1
UNP
1
2
6
3
2
6
3
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
THR
26
A
THR
6
A
THR
29
A
THR
9
A
CYS
45
A
CYS
25
A
SER
48
A
SER
28
A
ILE
33
A
ILE
13
A
GLU
36
A
GLU
16
A
TYR
118
A
TYR
98
A
LEU
127
A
LEU
107
A
GLY
104
A
GLY
84
A
TYR
113
A
TYR
93
A
GLN
53
A
GLN
33
A
GLN
61
A
GLN
41
A
GLN
64
A
GLN
44
A
ASN
70
A
ASN
50
A
GLY
74
A
GLY
54
A
HIS
76
A
HIS
56
A
ILE
41
A
ILE
21
A
LEU
43
A
LEU
23
A
LEU
93
A
LEU
73
A
LEU
95
A
LEU
75
A
VAL
85
A
VAL
65
A
PRO
87
A
PRO
67
B
THR
26
B
THR
6
B
THR
29
B
THR
9
B
CYS
45
B
CYS
25
B
SER
48
B
SER
28
B
ASN
32
B
ASN
12
B
GLU
36
B
GLU
16
B
TYR
118
B
TYR
98
B
LEU
127
B
LEU
107
B
GLY
104
B
GLY
84
B
TYR
113
B
TYR
93
B
GLN
53
B
GLN
33
B
GLU
60
B
GLU
40
B
LEU
65
B
LEU
45
B
ASN
70
B
ASN
50
B
GLY
74
B
GLY
54
B
ILE
77
B
ILE
57
B
ILE
41
B
ILE
21
B
LEU
43
B
LEU
23
B
LEU
93
B
LEU
73
B
LEU
95
B
LEU
75
B
VAL
85
B
VAL
65
B
PRO
87
B
PRO
67
4
P 1 21 1