0.009385 0.000000 0.000000 0.000000 0.009385 0.000000 0.000000 0.000000 0.015368 0.00000 0.00000 0.00000 Dong, C. Hou, H. Yang, X. Dong, Y. Shen, Y. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 106.549 106.549 65.070 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking I -1 126.904 IODIDE ION non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C Y 128 N C Y 129 N N Y 130 N C Y 131 N C Y 132 N N N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N N N 148 S C N 149 N C N 150 N O N 151 S C N 152 N C N 153 N C N 154 N C N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N I N 170 N N N 171 S C N 172 N C N 173 N O N 174 N C N 175 N C N 176 N C N 177 N C N 178 N O N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N N N 193 S C N 194 N C N 195 N O N 196 N C N 197 N C N 198 N C N 199 N C N 200 N N N 201 N O N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N N N 218 S C N 219 N C N 220 N O N 221 N C N 222 N C N 223 N S N 224 N C N 225 N O N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N N N 238 S C N 239 N C N 240 N O N 241 N C Y 242 N C Y 243 N C Y 244 N C Y 245 N C Y 246 N C Y 247 N C N 248 N O N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N N N 261 S C N 262 N C N 263 N O N 264 N C N 265 N C N 266 N C N 267 N O N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N N N 278 S C N 279 N C N 280 N O N 281 N C N 282 N O N 283 N O N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N N N 292 S C N 293 N C N 294 N O N 295 R C N 296 N O N 297 N C N 298 N O N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N N N 309 S C N 310 N C N 311 N O N 312 N C Y 313 N C Y 314 N C Y 315 N C Y 316 N N Y 317 N C Y 318 N C Y 319 N C Y 320 N C Y 321 N C N 322 N O N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N N N 336 S C N 337 N C N 338 N O N 339 N C Y 340 N C Y 341 N C Y 342 N C Y 343 N C Y 344 N C Y 345 N C N 346 N O N 347 N O N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N N N 360 S C N 361 N C N 362 N O N 363 N C N 364 N C N 365 N C N 366 N O N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing Y 235 N doub Y 236 N sing Y 237 N sing N 238 N sing Y 239 N doub N 240 N sing Y 241 N doub N 242 N sing Y 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N doub N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N doub N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N doub N 300 N sing N 301 N sing N 302 N sing N 303 N sing Y 304 N doub Y 305 N sing Y 306 N sing N 307 N sing Y 308 N doub Y 309 N sing Y 310 N sing N 311 N sing Y 312 N sing Y 313 N doub N 314 N sing Y 315 N doub N 316 N sing Y 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N doub N 328 N sing N 329 N sing N 330 N sing N 331 N sing Y 332 N doub Y 333 N sing Y 334 N sing N 335 N sing Y 336 N doub N 337 N sing Y 338 N doub N 339 N sing Y 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N doub N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing DK Acta Crystallogr.,Sect.D ABCRE6 0766 0907-4449 68 95 101 10.1107/S0907444911051031 22281737 Structure of Escherichia coli BamD and its functional implications in outer membrane protein assembly 2012 10.2210/pdb3q5m/pdb pdb_00003q5m 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2010-07-21 MARMOSAIC 325 mm CCD GRAPHITE SINGLE WAVELENGTH M x-ray 1 0.9791 1.0 3W1A BSRF 0.9791 SYNCHROTRON BSRF BEAMLINE 3W1A 25640.625 UPF0169 lipoprotein yfiO 1 man polymer 126.904 IODIDE ION 7 syn non-polymer 18.015 water 21 nat water Outer membrane protein assembly complex subunit YfiO no no ASKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSV AEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT ASKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSV AEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n K12 sample yfiO 83333 Escherichia coli 562 Escherichia coli 1 3.60 65.85 VAPOR DIFFUSION, SITTING DROP 7.0 0.14M KI, 26%-27% PEG3350, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K 277 chem_comp_atom chem_comp_bond database_2 struct_ref_seq_dif struct_site repository Initial release Database references Database references Data collection Database references Derived calculations 1 0 2011-12-28 1 1 2012-02-01 1 2 2012-05-02 1 3 2024-03-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y PDBJ 2010-12-28 REL REL IOD IODIDE ION HOH water I 14 2 IOD IOD 224 A I 15 2 IOD IOD 225 A I 1 2 IOD IOD 226 A I 2 2 IOD IOD 227 A I 3 2 IOD IOD 228 A I 5 2 IOD IOD 229 A I 9 2 IOD IOD 230 A HOH 11 3 HOH HOH 231 A HOH 12 3 HOH HOH 232 A HOH 17 3 HOH HOH 233 A HOH 26 3 HOH HOH 235 A HOH 28 3 HOH HOH 236 A HOH 29 3 HOH HOH 237 A HOH 30 3 HOH HOH 238 A HOH 31 3 HOH HOH 239 A HOH 32 3 HOH HOH 240 A HOH 33 3 HOH HOH 241 A HOH 34 3 HOH HOH 242 A HOH 35 3 HOH HOH 243 A HOH 36 3 HOH HOH 244 A HOH 37 3 HOH HOH 245 A HOH 38 3 HOH HOH 246 A HOH 39 3 HOH HOH 247 A HOH 40 3 HOH HOH 248 A HOH 41 3 HOH HOH 249 A HOH 44 3 HOH HOH 250 A HOH 48 3 HOH HOH 251 A HOH 49 3 HOH HOH 252 A ALA 0 n 1 ALA 0 A SER 1 n 2 SER 1 A LYS 2 n 3 LYS 2 A GLU 3 n 4 GLU 3 A GLU 4 n 5 GLU 4 A VAL 5 n 6 VAL 5 A PRO 6 n 7 PRO 6 A ASP 7 n 8 ASP 7 A ASN 8 n 9 ASN 8 A PRO 9 n 10 PRO 9 A PRO 10 n 11 PRO 10 A ASN 11 n 12 ASN 11 A GLU 12 n 13 GLU 12 A ILE 13 n 14 ILE 13 A TYR 14 n 15 TYR 14 A ALA 15 n 16 ALA 15 A THR 16 n 17 THR 16 A ALA 17 n 18 ALA 17 A GLN 18 n 19 GLN 18 A GLN 19 n 20 GLN 19 A LYS 20 n 21 LYS 20 A LEU 21 n 22 LEU 21 A GLN 22 n 23 GLN 22 A ASP 23 n 24 ASP 23 A GLY 24 n 25 GLY 24 A ASN 25 n 26 ASN 25 A TRP 26 n 27 TRP 26 A ARG 27 n 28 ARG 27 A GLN 28 n 29 GLN 28 A ALA 29 n 30 ALA 29 A ILE 30 n 31 ILE 30 A THR 31 n 32 THR 31 A GLN 32 n 33 GLN 32 A LEU 33 n 34 LEU 33 A GLU 34 n 35 GLU 34 A ALA 35 n 36 ALA 35 A LEU 36 n 37 LEU 36 A ASP 37 n 38 ASP 37 A ASN 38 n 39 ASN 38 A ARG 39 n 40 ARG 39 A TYR 40 n 41 TYR 40 A PRO 41 n 42 PRO 41 A PHE 42 n 43 PHE 42 A GLY 43 n 44 GLY 43 A PRO 44 n 45 PRO 44 A TYR 45 n 46 TYR 45 A SER 46 n 47 SER 46 A GLN 47 n 48 GLN 47 A GLN 48 n 49 GLN 48 A VAL 49 n 50 VAL 49 A GLN 50 n 51 GLN 50 A LEU 51 n 52 LEU 51 A ASP 52 n 53 ASP 52 A LEU 53 n 54 LEU 53 A ILE 54 n 55 ILE 54 A TYR 55 n 56 TYR 55 A ALA 56 n 57 ALA 56 A TYR 57 n 58 TYR 57 A TYR 58 n 59 TYR 58 A LYS 59 n 60 LYS 59 A ASN 60 n 61 ASN 60 A ALA 61 n 62 ALA 61 A ASP 62 n 63 ASP 62 A LEU 63 n 64 LEU 63 A PRO 64 n 65 PRO 64 A LEU 65 n 66 LEU 65 A ALA 66 n 67 ALA 66 A GLN 67 n 68 GLN 67 A ALA 68 n 69 ALA 68 A ALA 69 n 70 ALA 69 A ILE 70 n 71 ILE 70 A ASP 71 n 72 ASP 71 A ARG 72 n 73 ARG 72 A PHE 73 n 74 PHE 73 A ILE 74 n 75 ILE 74 A ARG 75 n 76 ARG 75 A LEU 76 n 77 LEU 76 A ASN 77 n 78 ASN 77 A PRO 78 n 79 PRO 78 A THR 79 n 80 THR 79 A HIS 80 n 81 HIS 80 A PRO 81 n 82 PRO 81 A ASN 82 n 83 ASN 82 A ILE 83 n 84 ILE 83 A ASP 84 n 85 ASP 84 A TYR 85 n 86 TYR 85 A VAL 86 n 87 VAL 86 A MET 87 n 88 MET 87 A TYR 88 n 89 TYR 88 A MET 89 n 90 MET 89 A ARG 90 n 91 ARG 90 A GLY 91 n 92 GLY 91 A LEU 92 n 93 LEU 92 A THR 93 n 94 THR 93 A ASN 94 n 95 ASN 94 A MET 95 n 96 MET 95 A ALA 96 n 97 ALA 96 A LEU 97 n 98 LEU 97 A ASP 98 n 99 ASP 98 A ASP 99 n 100 ASP 99 A ALA 100 n 101 SER 100 A n 102 101 A n 103 102 A n 104 103 A n 105 104 A n 106 105 A n 107 106 A n 108 107 A n 109 108 A n 110 109 A n 111 110 A n 112 111 A n 113 112 A ARG 113 n 114 ARG 113 A ASP 114 n 115 ASP 114 A PRO 115 n 116 PRO 115 A GLN 116 n 117 GLN 116 A HIS 117 n 118 HIS 117 A ALA 118 n 119 ALA 118 A ARG 119 n 120 ARG 119 A ALA 120 n 121 ALA 120 A ALA 121 n 122 ALA 121 A PHE 122 n 123 PHE 122 A SER 123 n 124 SER 123 A ASP 124 n 125 ASP 124 A PHE 125 n 126 PHE 125 A SER 126 n 127 SER 126 A LYS 127 n 128 LYS 127 A LEU 128 n 129 LEU 128 A VAL 129 n 130 VAL 129 A ARG 130 n 131 ARG 130 A GLY 131 n 132 GLY 131 A TYR 132 n 133 TYR 132 A PRO 133 n 134 PRO 133 A ASN 134 n 135 ASN 134 A SER 135 n 136 SER 135 A GLN 136 n 137 GLN 136 A TYR 137 n 138 TYR 137 A THR 138 n 139 THR 138 A THR 139 n 140 THR 139 A ASP 140 n 141 ASP 140 A ALA 141 n 142 ALA 141 A THR 142 n 143 THR 142 A LYS 143 n 144 LYS 143 A ARG 144 n 145 ARG 144 A LEU 145 n 146 LEU 145 A VAL 146 n 147 VAL 146 A PHE 147 n 148 PHE 147 A LEU 148 n 149 LEU 148 A LYS 149 n 150 LYS 149 A ASP 150 n 151 ASP 150 A ARG 151 n 152 ARG 151 A LEU 152 n 153 LEU 152 A ALA 153 n 154 ALA 153 A LYS 154 n 155 LYS 154 A TYR 155 n 156 TYR 155 A GLU 156 n 157 GLU 156 A TYR 157 n 158 TYR 157 A SER 158 n 159 SER 158 A VAL 159 n 160 VAL 159 A ALA 160 n 161 ALA 160 A GLU 161 n 162 GLU 161 A TYR 162 n 163 TYR 162 A TYR 163 n 164 TYR 163 A THR 164 n 165 THR 164 A GLU 165 n 166 GLU 165 A ARG 166 n 167 ARG 166 A GLY 167 n 168 GLY 167 A ALA 168 n 169 ALA 168 A TRP 169 n 170 TRP 169 A VAL 170 n 171 VAL 170 A ALA 171 n 172 ALA 171 A VAL 172 n 173 VAL 172 A VAL 173 n 174 VAL 173 A ASN 174 n 175 ASN 174 A ARG 175 n 176 ARG 175 A VAL 176 n 177 VAL 176 A GLU 177 n 178 GLU 177 A GLY 178 n 179 GLY 178 A MET 179 n 180 MET 179 A LEU 180 n 181 LEU 180 A ARG 181 n 182 ARG 181 A ASP 182 n 183 ASP 182 A TYR 183 n 184 TYR 183 A PRO 184 n 185 PRO 184 A ASP 185 n 186 ASP 185 A THR 186 n 187 THR 186 A GLN 187 n 188 GLN 187 A ALA 188 n 189 ALA 188 A THR 189 n 190 THR 189 A ARG 190 n 191 ARG 190 A ASP 191 n 192 ASP 191 A ALA 192 n 193 ALA 192 A LEU 193 n 194 LEU 193 A PRO 194 n 195 PRO 194 A LEU 195 n 196 LEU 195 A MET 196 n 197 MET 196 A GLU 197 n 198 GLU 197 A ASN 198 n 199 ASN 198 A ALA 199 n 200 ALA 199 A TYR 200 n 201 TYR 200 A ARG 201 n 202 ARG 201 A GLN 202 n 203 GLN 202 A MET 203 n 204 MET 203 A GLN 204 n 205 GLN 204 A MET 205 n 206 MET 205 A ASN 206 n 207 ASN 206 A ALA 207 n 208 ALA 207 A GLN 208 n 209 GLN 208 A ALA 209 n 210 ALA 209 A GLU 210 n 211 GLU 210 A LYS 211 n 212 LYS 211 A VAL 212 n 213 VAL 212 A ALA 213 n 214 ALA 213 A LYS 214 n 215 LYS 214 A ILE 215 n 216 ILE 215 A ILE 216 n 217 ILE 216 A ALA 217 n 218 ALA 217 A ALA 218 n 219 ALA 218 A ASN 219 n 220 ASN 219 A SER 220 n 221 SER 220 A SER 221 n 222 SER 221 A n 223 222 A n 224 223 A 0.4443 -0.4265 -0.0186 2.5224 -1.4925 2.0321 -0.0235 0.1845 -0.0654 -0.2994 -0.1249 0.2624 0.2468 -0.0469 0.0863 0.1536 -0.0263 -0.0443 0.1951 0.0291 0.2221 refined 37.6650 -0.7724 36.5430 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 all author_defined_assembly 1 monomeric software_defined_assembly PISA 2 dimeric 2460 -2 21160 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 6_556 x,-y,-z+3/2 crystal symmetry operation 0.0000000000 0.0000000000 97.6050000000 1 A HOH 240 I HOH 1 A OG SER 100 A OG SER 101 1 Y 1 A CG ASP 185 A CG ASP 186 1 Y 1 A OD1 ASP 185 A OD1 ASP 186 1 Y 1 A OD2 ASP 185 A OD2 ASP 186 1 Y 1 A ALA 101 A ALA 102 1 Y 1 A LEU 102 A LEU 103 1 Y 1 A GLN 103 A GLN 104 1 Y 1 A GLY 104 A GLY 105 1 Y 1 A PHE 105 A PHE 106 1 Y 1 A PHE 106 A PHE 107 1 Y 1 A GLY 107 A GLY 108 1 Y 1 A VAL 108 A VAL 109 1 Y 1 A ASP 109 A ASP 110 1 Y 1 A ARG 110 A ARG 111 1 Y 1 A SER 111 A SER 112 1 Y 1 A ASP 112 A ASP 113 1 Y 1 A ASN 222 A ASN 223 1 Y 1 A THR 223 A THR 224 1 Y 1 A LYS 2 -164.59 -14.53 1 A GLU 3 101.12 25.27 3.3238 0.0000 -0.0000 3.3238 0.0000 -6.6477 0.2613 0.2162 0.2207 2.604 32.602 1165 11964 10307 10.01 97.40 0.44 random 1 THROUGHOUT 2.49 2.0 SAD 0.95 1.20 MLHL FLAT BULK SOLVENT MODEL 39.060 0.333 2.604 32.602 21 1722 7 0 1694 0.009 1731 1.155 2351 17.310 652 0.074 250 0.006 313 0.3602 0.3282 2.7223 136 1225 94.00 0.3437 0.2813 2.8658 136 1228 94.00 0.3346 0.2665 3.0452 143 1277 96.00 0.3194 0.2423 3.2801 142 1284 97.00 0.2636 0.2193 3.6098 147 1316 99.00 0.2099 0.1721 4.1313 147 1333 99.00 0.1852 0.1628 5.2016 153 1368 100.00 0.2885 0.2350 32.6041 161 1448 100.00 2.6 50 3Q5M 11964 10307 5.0 2.0 0.107 0.133 1 41.38 23.3 86.2 0.624 2.60 2.69 2.8 1155 0.643 1 10.4 99.9 refinement PHENIX (phenix.refine: 1.6.4_486) Crystal structure of Escherichia coli BamD 1 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 3 N N A PRO 9 A PRO 10 HELX_P A ASP 23 A ASP 24 1 1 15 A ASN 25 A ASN 26 HELX_P A TYR 40 A TYR 41 1 2 16 A TYR 45 A TYR 46 HELX_P A ASN 60 A ASN 61 1 3 16 A ASP 62 A ASP 63 HELX_P A ASN 77 A ASN 78 1 4 16 A ASN 82 A ASN 83 HELX_P A ASP 99 A ASP 100 1 5 18 A PRO 115 A PRO 116 HELX_P A TYR 132 A TYR 133 1 6 18 A TYR 137 A TYR 138 HELX_P A ARG 166 A ARG 167 1 7 30 A ALA 168 A ALA 169 HELX_P A TYR 183 A TYR 184 1 8 16 A THR 186 A THR 187 HELX_P A MET 203 A MET 204 1 9 18 A MET 205 A MET 206 HELX_P A ASN 219 A ASN 220 1 10 15 PROTEIN BINDING Lipoprotein, BamD, PROTEIN BINDING A ALA 0 A ALA 1 1 A SER 1 A SER 2 -5.52 YFIO_ECOLI UNP 1 23 P0AC02 SKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVA EYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 23 245 3Q5M 1 223 P0AC02 A 1 2 224 1 expression tag ALA 0 3Q5M A P0AC02 UNP 1 BINDING SITE FOR RESIDUE IOD A 224 A IOD 224 Software 1 BINDING SITE FOR RESIDUE IOD A 225 A IOD 225 Software 1 BINDING SITE FOR RESIDUE IOD A 226 A IOD 226 Software 3 BINDING SITE FOR RESIDUE IOD A 227 A IOD 227 Software 3 BINDING SITE FOR RESIDUE IOD A 228 A IOD 228 Software 1 BINDING SITE FOR RESIDUE IOD A 229 A IOD 229 Software 1 A PRO 64 A PRO 65 1 1_555 A ARG 130 A ARG 131 1 6_556 A ASN 8 A ASN 9 3 1_555 A ILE 13 A ILE 14 3 1_555 A THR 16 A THR 17 3 1_555 A GLU 3 A GLU 4 3 1_555 A ASN 38 A ASN 39 3 1_555 A ARG 39 A ARG 40 3 1_555 A TYR 45 A TYR 46 1 1_555 A PRO 44 A PRO 45 1 1_555 91 P 41 2 2