0.013563 0.007830 0.000000 0.000000 0.015661 0.000000 0.000000 0.000000 0.014153 0.00000 0.00000 0.00000 Hansen, G. Niefind, K. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 73.732 73.732 70.658 C22 H18 F3 N3 O4 445.391 2-hydroxyethyl (4R)-4-(4-cyanophenyl)-6-methyl-2-oxo-1-[3-(trifluoromethyl)phenyl]-1,2,3,4-tetrahydropyrimidine-5-carboxylate non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C6 H12 O5 164.156 alpha-L-fucopyranose alpha-L-fucose; 6-deoxy-alpha-L-galactopyranose; L-fucose; fucose L-saccharide, alpha linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE D-saccharide, beta linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N C N 2 N F N 3 N N N 4 N O N 5 R C N 6 N F N 7 N N N 8 N O N 9 N C N 10 N F N 11 N N N 12 N O N 13 N C Y 14 N C Y 15 N C Y 16 N C Y 17 N C Y 18 N C Y 19 N C N 20 N C Y 21 N C Y 22 N C Y 23 N C Y 24 N C Y 25 N C Y 26 N C N 27 N C N 28 N C N 29 N C N 30 N C N 31 N C N 32 N O N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N N N 52 S C N 53 N C N 54 N O N 55 N C N 56 N O N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N N N 65 S C N 66 N C N 67 N O N 68 N C N 69 N C N 70 N C N 71 N N N 72 N C N 73 N N N 74 N N N 75 N O N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N N N 92 S C N 93 N C N 94 N O N 95 N C N 96 N C N 97 N O N 98 N N N 99 N O N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N O N 115 N O N 116 N O N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N N N 125 R C N 126 N C N 127 N O N 128 N C N 129 N S N 130 N O N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 R C N 139 S C N 140 R C N 141 S C N 142 S C N 143 N C N 144 N O N 145 N O N 146 N O N 147 N O N 148 N O N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 N C N 166 N C N 167 N C N 168 N O N 169 N N N 170 N O N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N N N 182 S C N 183 N C N 184 N O N 185 N C N 186 N C N 187 N C N 188 N O N 189 N O N 190 N O N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N N N 201 N C N 202 N C N 203 N O N 204 N O N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N N N 211 S C N 212 N C N 213 N O N 214 N C Y 215 N C Y 216 N N Y 217 N C Y 218 N C Y 219 N N N 220 N O N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N O N 232 N H N 233 N H N 234 N N N 235 S C N 236 N C N 237 N O N 238 S C N 239 N C N 240 N C N 241 N C N 242 N O N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N N N 257 S C N 258 N C N 259 N O N 260 N C N 261 N C N 262 N C N 263 N C N 264 N O N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N N N 279 S C N 280 N C N 281 N O N 282 N C N 283 N C N 284 N S N 285 N C N 286 N O N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 R C N 299 R C N 300 R C N 301 S C N 302 R C N 303 N C N 304 N C N 305 N C N 306 N N N 307 N O N 308 N O N 309 N O N 310 N O N 311 N O N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N N N 329 S C N 330 N C N 331 N O N 332 N C Y 333 N C Y 334 N C Y 335 N C Y 336 N C Y 337 N C Y 338 N C N 339 N O N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N N N 352 S C N 353 N C N 354 N O N 355 N C N 356 N C N 357 N C N 358 N O N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N N N 369 S C N 370 N C N 371 N O N 372 N C N 373 N O N 374 N O N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N N N 383 S C N 384 N C N 385 N O N 386 R C N 387 N O N 388 N C N 389 N O N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N N N 400 S C N 401 N C N 402 N O N 403 N C Y 404 N C Y 405 N C Y 406 N C Y 407 N N Y 408 N C Y 409 N C Y 410 N C Y 411 N C Y 412 N C N 413 N O N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N N N 427 S C N 428 N C N 429 N O N 430 N C Y 431 N C Y 432 N C Y 433 N C Y 434 N C Y 435 N C Y 436 N C N 437 N O N 438 N O N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N N N 451 S C N 452 N C N 453 N O N 454 N C N 455 N C N 456 N C N 457 N O N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 1 N sing N 2 N doub N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N doub N 12 N doub N 13 N sing N 14 N sing N 15 N trip N 16 N sing N 17 N sing N 18 N sing Y 19 N doub Y 20 N sing Y 21 N sing Y 22 N doub N 23 N sing Y 24 N sing Y 25 N doub Y 26 N doub Y 27 N sing Y 28 N sing Y 29 N doub Y 30 N sing N 31 N sing Y 32 N doub N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N doub N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N doub N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N doub N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N doub N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N doub N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N doub N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N doub N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N doub N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N doub N 211 N sing N 212 N sing N 213 N sing N 214 N sing Y 215 N sing Y 216 N doub Y 217 N doub N 218 N sing Y 219 N sing N 220 N sing Y 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N doub N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N doub N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N doub N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N doub N 325 N sing N 326 N sing N 327 N sing N 328 N sing Y 329 N doub Y 330 N sing Y 331 N sing N 332 N sing Y 333 N doub N 334 N sing Y 335 N doub N 336 N sing Y 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N doub N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N doub N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N doub N 394 N sing N 395 N sing N 396 N sing N 397 N sing Y 398 N doub Y 399 N sing Y 400 N sing N 401 N sing Y 402 N doub Y 403 N sing Y 404 N sing N 405 N sing Y 406 N sing Y 407 N doub N 408 N sing Y 409 N doub N 410 N sing Y 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N doub N 422 N sing N 423 N sing N 424 N sing N 425 N sing Y 426 N doub Y 427 N sing Y 428 N sing N 429 N sing Y 430 N doub N 431 N sing Y 432 N doub N 433 N sing Y 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N doub N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 409 681 691 10.1016/j.jmb.2011.04.047 21549129 Unexpected active-site flexibility in the structure of human neutrophil elastase in complex with a new dihydropyrimidone inhibitor. 2011 10.2210/pdb3q77/pdb pdb_00003q77 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 IMAGE PLATE 2004-08-20 MAR scanner 345 mm plate Si 111 CHANNEL SINGLE WAVELENGTH M x-ray 1 1.1 1.0 X31 EMBL/DESY, HAMBURG 1.1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X31 23318.982 Neutrophil elastase 3.4.21.37 UNP residues 30-247 1 nat polymer 570.542 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose 1 man branched 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose 1 man non-polymer 445.391 2-hydroxyethyl (4R)-4-(4-cyanophenyl)-6-methyl-2-oxo-1-[3-(trifluoromethyl)phenyl]-1,2,3,4-tetrahydropyrimidine-5-carboxylate 1 syn non-polymer 18.015 water 136 nat water Bone marrow serine protease, Elastase-2, Human leukocyte elastase, HLE, Medullasin, PMN elastase no no IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQVFAVQRIFENGY DPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTSLCRRSNVCTL VRGRQAGVCFGDSGSPLVCNGLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSIIQ IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQVFAVQRIFENGY DPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTSLCRRSNVCTL VRGRQAGVCFGDSGSPLVCNGLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSIIQ A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample 9606 Homo sapiens 1 2.38 48.27 VAPOR DIFFUSION, SITTING DROP 5 20% w/v PEG3350, 0.2 M ammonium citrate, VAPOR DIFFUSION, SITTING DROP, temperature 293K 293 diffrn_source software struct_conn atom_site chem_comp entity pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_struct_assembly_gen struct_asym struct_conn struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn repository Initial release Carbohydrate remediation repository Remediation Version format compliance Data collection Derived calculations Refinement description Atomic model Data collection Derived calculations Structure summary Data collection Database references Derived calculations Refinement description Structure summary 1 0 2011-05-11 1 1 2011-07-13 1 2 2019-07-17 2 0 2020-07-29 2 1 2023-09-13 _diffrn_source.pdbx_synchrotron_site _software.classification _software.name _software.version _struct_conn.pdbx_leaving_atom_flag _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.type_symbol _chem_comp.name _chem_comp.type _entity.formula_weight _entity.pdbx_description _entity.pdbx_number_of_molecules _entity.type _pdbx_struct_assembly_gen.asym_id_list _struct_conn.pdbx_dist_value _struct_conn.pdbx_role _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag A NAG 401 n B NAG 1 A NAG 403 n B NAG 2 A FUC 402 n B FUC 3 LFucpa a-L-fucopyranose a-L-Fucp Fuc DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc RCSB Y RCSB 2011-01-04 REL REL oligosaccharide DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1- 2 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-1-2/a4-b1_a6-c1 2 PDB2Glycan 1.1.0 WURCS []{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}[(6+1)][a-L-Fucp]{}}} 2 PDB-CARE LINUCS C1 O4 NAG NAG 2 1 2 O1 HO4 sing C1 O6 FUC NAG 3 1 2 O1 HO6 sing n n n NAG 2-acetamido-2-deoxy-beta-D-glucopyranose 2HY 2-hydroxyethyl (4R)-4-(4-cyanophenyl)-6-methyl-2-oxo-1-[3-(trifluoromethyl)phenyl]-1,2,3,4-tetrahydropyrimidine-5-carboxylate HOH water 1HNE PDB ENTRY 1HNE PDB experimental model NAG 411 3 NAG NAG 411 A 2HY 500 4 2HY 2HY 500 A HOH 501 5 HOH HOH 501 A HOH 502 5 HOH HOH 502 A HOH 503 5 HOH HOH 503 A HOH 504 5 HOH HOH 504 A HOH 505 5 HOH HOH 505 A HOH 506 5 HOH HOH 506 A HOH 507 5 HOH HOH 507 A HOH 508 5 HOH HOH 508 A HOH 509 5 HOH HOH 509 A HOH 510 5 HOH HOH 510 A HOH 511 5 HOH HOH 511 A HOH 512 5 HOH HOH 512 A HOH 513 5 HOH HOH 513 A HOH 514 5 HOH HOH 514 A HOH 515 5 HOH HOH 515 A HOH 516 5 HOH HOH 516 A HOH 517 5 HOH HOH 517 A HOH 518 5 HOH HOH 518 A HOH 519 5 HOH HOH 519 A HOH 520 5 HOH HOH 520 A HOH 521 5 HOH HOH 521 A HOH 522 5 HOH HOH 522 A HOH 523 5 HOH HOH 523 A HOH 524 5 HOH HOH 524 A HOH 525 5 HOH HOH 525 A HOH 526 5 HOH HOH 526 A HOH 527 5 HOH HOH 527 A HOH 528 5 HOH HOH 528 A HOH 529 5 HOH HOH 529 A HOH 530 5 HOH HOH 530 A HOH 531 5 HOH HOH 531 A HOH 532 5 HOH HOH 532 A HOH 533 5 HOH HOH 533 A HOH 534 5 HOH HOH 534 A HOH 535 5 HOH HOH 535 A HOH 536 5 HOH HOH 536 A HOH 537 5 HOH HOH 537 A HOH 538 5 HOH HOH 538 A HOH 539 5 HOH HOH 539 A HOH 540 5 HOH HOH 540 A HOH 541 5 HOH HOH 541 A HOH 542 5 HOH HOH 542 A HOH 543 5 HOH HOH 543 A HOH 544 5 HOH HOH 544 A HOH 545 5 HOH HOH 545 A HOH 546 5 HOH HOH 546 A HOH 547 5 HOH HOH 547 A HOH 548 5 HOH HOH 548 A HOH 549 5 HOH HOH 549 A HOH 550 5 HOH HOH 550 A HOH 551 5 HOH HOH 551 A HOH 552 5 HOH HOH 552 A HOH 553 5 HOH HOH 553 A HOH 554 5 HOH HOH 554 A HOH 555 5 HOH HOH 555 A HOH 556 5 HOH HOH 556 A HOH 557 5 HOH HOH 557 A HOH 558 5 HOH HOH 558 A HOH 559 5 HOH HOH 559 A HOH 560 5 HOH HOH 560 A HOH 561 5 HOH HOH 561 A HOH 562 5 HOH HOH 562 A HOH 563 5 HOH HOH 563 A HOH 564 5 HOH HOH 564 A HOH 565 5 HOH HOH 565 A HOH 566 5 HOH HOH 566 A HOH 567 5 HOH HOH 567 A HOH 568 5 HOH HOH 568 A HOH 569 5 HOH HOH 569 A HOH 570 5 HOH HOH 570 A HOH 571 5 HOH HOH 571 A HOH 572 5 HOH HOH 572 A HOH 573 5 HOH HOH 573 A HOH 574 5 HOH HOH 574 A HOH 575 5 HOH HOH 575 A HOH 576 5 HOH HOH 576 A HOH 577 5 HOH HOH 577 A HOH 578 5 HOH HOH 578 A HOH 579 5 HOH HOH 579 A HOH 580 5 HOH HOH 580 A HOH 581 5 HOH HOH 581 A HOH 582 5 HOH HOH 582 A HOH 583 5 HOH HOH 583 A HOH 584 5 HOH HOH 584 A HOH 585 5 HOH HOH 585 A HOH 586 5 HOH HOH 586 A HOH 587 5 HOH HOH 587 A HOH 588 5 HOH HOH 588 A HOH 589 5 HOH HOH 589 A HOH 590 5 HOH HOH 590 A HOH 591 5 HOH HOH 591 A HOH 592 5 HOH HOH 592 A HOH 593 5 HOH HOH 593 A HOH 594 5 HOH HOH 594 A HOH 595 5 HOH HOH 595 A HOH 596 5 HOH HOH 596 A HOH 597 5 HOH HOH 597 A HOH 598 5 HOH HOH 598 A HOH 599 5 HOH HOH 599 A HOH 600 5 HOH HOH 600 A HOH 601 5 HOH HOH 601 A HOH 602 5 HOH HOH 602 A HOH 603 5 HOH HOH 603 A HOH 604 5 HOH HOH 604 A HOH 605 5 HOH HOH 605 A HOH 606 5 HOH HOH 606 A HOH 607 5 HOH HOH 607 A HOH 608 5 HOH HOH 608 A HOH 609 5 HOH HOH 609 A HOH 610 5 HOH HOH 610 A HOH 611 5 HOH HOH 611 A HOH 612 5 HOH HOH 612 A HOH 613 5 HOH HOH 613 A HOH 614 5 HOH HOH 614 A HOH 615 5 HOH HOH 615 A HOH 616 5 HOH HOH 616 A HOH 617 5 HOH HOH 617 A HOH 618 5 HOH HOH 618 A HOH 619 5 HOH HOH 619 A HOH 620 5 HOH HOH 620 A HOH 621 5 HOH HOH 621 A HOH 622 5 HOH HOH 622 A HOH 623 5 HOH HOH 623 A HOH 624 5 HOH HOH 624 A HOH 625 5 HOH HOH 625 A HOH 626 5 HOH HOH 626 A HOH 627 5 HOH HOH 627 A HOH 628 5 HOH HOH 628 A HOH 629 5 HOH HOH 629 A HOH 630 5 HOH HOH 630 A HOH 631 5 HOH HOH 631 A HOH 632 5 HOH HOH 632 A HOH 633 5 HOH HOH 633 A HOH 634 5 HOH HOH 634 A HOH 635 5 HOH HOH 635 A HOH 636 5 HOH HOH 636 A ILE 16 n 1 ILE 16 A VAL 17 n 2 VAL 17 A GLY 18 n 3 GLY 18 A GLY 19 n 4 GLY 19 A ARG 20 n 5 ARG 20 A ARG 21 n 6 ARG 21 A ALA 22 n 7 ALA 22 A ARG 23 n 8 ARG 23 A PRO 24 n 9 PRO 24 A HIS 25 n 10 HIS 25 A ALA 26 n 11 ALA 26 A TRP 27 n 12 TRP 27 A PRO 28 n 13 PRO 28 A PHE 29 n 14 PHE 29 A MET 30 n 15 MET 30 A VAL 31 n 16 VAL 31 A SER 32 n 17 SER 32 A LEU 33 n 18 LEU 33 A GLN 34 n 19 GLN 34 A LEU 35 n 20 LEU 35 A ARG 36 n 21 ARG 36 A GLY 38 n 22 GLY 38 A GLY 39 n 23 GLY 39 A HIS 40 n 24 HIS 40 A PHE 41 n 25 PHE 41 A CYS 42 n 26 CYS 42 A GLY 43 n 27 GLY 43 A ALA 44 n 28 ALA 44 A THR 45 n 29 THR 45 A LEU 46 n 30 LEU 46 A ILE 47 n 31 ILE 47 A ALA 48 n 32 ALA 48 A PRO 49 n 33 PRO 49 A ASN 50 n 34 ASN 50 A PHE 51 n 35 PHE 51 A VAL 52 n 36 VAL 52 A MET 53 n 37 MET 53 A SER 54 n 38 SER 54 A ALA 55 n 39 ALA 55 A ALA 56 n 40 ALA 56 A HIS 57 n 41 HIS 57 A CYS 58 n 42 CYS 58 A VAL 59 n 43 VAL 59 A ALA 60 n 44 ALA 60 A ASN 61 n 45 ASN 61 A VAL 62 n 46 VAL 62 A ASN 62 n 47 A ASN 62 A VAL 62 n 48 B VAL 62 A ARG 63 n 49 ARG 63 A ALA 64 n 50 ALA 64 A VAL 65 n 51 VAL 65 A ARG 65 n 52 A ARG 65 A VAL 66 n 53 VAL 66 A VAL 67 n 54 VAL 67 A LEU 68 n 55 LEU 68 A GLY 69 n 56 GLY 69 A ALA 70 n 57 ALA 70 A HIS 71 n 58 HIS 71 A ASN 72 n 59 ASN 72 A LEU 73 n 60 LEU 73 A SER 74 n 61 SER 74 A ARG 75 n 62 ARG 75 A ARG 76 n 63 ARG 76 A GLU 77 n 64 GLU 77 A PRO 78 n 65 PRO 78 A THR 79 n 66 THR 79 A ARG 80 n 67 ARG 80 A GLN 81 n 68 GLN 81 A VAL 82 n 69 VAL 82 A PHE 83 n 70 PHE 83 A ALA 84 n 71 ALA 84 A VAL 85 n 72 VAL 85 A GLN 86 n 73 GLN 86 A ARG 87 n 74 ARG 87 A ILE 88 n 75 ILE 88 A PHE 89 n 76 PHE 89 A GLU 90 n 77 GLU 90 A ASN 91 n 78 ASN 91 A GLY 92 n 79 GLY 92 A TYR 94 n 80 TYR 94 A ASP 95 n 81 ASP 95 A PRO 98 n 82 PRO 98 A VAL 99 n 83 VAL 99 A ASN 99 n 84 A ASN 99 A LEU 99 n 85 B LEU 99 A LEU 100 n 86 LEU 100 A ASN 101 n 87 ASN 101 A ASP 102 n 88 ASP 102 A ILE 103 n 89 ILE 103 A VAL 104 n 90 VAL 104 A ILE 105 n 91 ILE 105 A LEU 106 n 92 LEU 106 A GLN 107 n 93 GLN 107 A LEU 108 n 94 LEU 108 A ASN 109 n 95 ASN 109 A GLY 110 n 96 GLY 110 A SER 111 n 97 SER 111 A ALA 112 n 98 ALA 112 A THR 113 n 99 THR 113 A ILE 114 n 100 ILE 114 A ASN 115 n 101 ASN 115 A ALA 116 n 102 ALA 116 A ASN 117 n 103 ASN 117 A VAL 118 n 104 VAL 118 A GLN 119 n 105 GLN 119 A VAL 120 n 106 VAL 120 A ALA 121 n 107 ALA 121 A GLN 122 n 108 GLN 122 A LEU 123 n 109 LEU 123 A PRO 124 n 110 PRO 124 A ALA 125 n 111 ALA 125 A GLN 126 n 112 GLN 126 A GLY 127 n 113 GLY 127 A ARG 128 n 114 ARG 128 A ARG 129 n 115 ARG 129 A LEU 130 n 116 LEU 130 A GLY 131 n 117 GLY 131 A ASN 132 n 118 ASN 132 A GLY 133 n 119 GLY 133 A VAL 134 n 120 VAL 134 A GLN 135 n 121 GLN 135 A CYS 136 n 122 CYS 136 A LEU 137 n 123 LEU 137 A ALA 138 n 124 ALA 138 A MET 139 n 125 MET 139 A GLY 140 n 126 GLY 140 A TRP 141 n 127 TRP 141 A GLY 142 n 128 GLY 142 A LEU 143 n 129 LEU 143 A LEU 144 n 130 LEU 144 A GLY 145 n 131 GLY 145 A ARG 147 n 132 ARG 147 A ASN 148 n 133 ASN 148 A ARG 149 n 134 ARG 149 A GLY 150 n 135 GLY 150 A ILE 151 n 136 ILE 151 A ALA 152 n 137 ALA 152 A SER 153 n 138 SER 153 A VAL 154 n 139 VAL 154 A LEU 155 n 140 LEU 155 A GLN 156 n 141 GLN 156 A GLU 157 n 142 GLU 157 A LEU 158 n 143 LEU 158 A ASN 159 n 144 ASN 159 A VAL 160 n 145 VAL 160 A THR 162 n 146 THR 162 A VAL 163 n 147 VAL 163 A VAL 164 n 148 VAL 164 A THR 165 n 149 THR 165 A SER 166 n 150 SER 166 A LEU 167 n 151 LEU 167 A CYS 168 n 152 CYS 168 A ARG 177 n 153 ARG 177 A ARG 178 n 154 ARG 178 A SER 179 n 155 SER 179 A ASN 180 n 156 ASN 180 A VAL 181 n 157 VAL 181 A CYS 182 n 158 CYS 182 A THR 183 n 159 THR 183 A LEU 184 n 160 LEU 184 A VAL 185 n 161 VAL 185 A ARG 186 n 162 ARG 186 A GLY 186 n 163 A GLY 186 A ARG 187 n 164 ARG 187 A GLN 188 n 165 GLN 188 A ALA 188 n 166 A ALA 188 A GLY 189 n 167 GLY 189 A VAL 190 n 168 VAL 190 A CYS 191 n 169 CYS 191 A PHE 192 n 170 PHE 192 A GLY 193 n 171 GLY 193 A ASP 194 n 172 ASP 194 A SER 195 n 173 SER 195 A GLY 196 n 174 GLY 196 A SER 197 n 175 SER 197 A PRO 198 n 176 PRO 198 A LEU 199 n 177 LEU 199 A VAL 200 n 178 VAL 200 A CYS 201 n 179 CYS 201 A ASN 204 n 180 ASN 204 A GLY 205 n 181 GLY 205 A LEU 208 n 182 LEU 208 A ILE 209 n 183 ILE 209 A HIS 210 n 184 HIS 210 A GLY 211 n 185 GLY 211 A ILE 212 n 186 ILE 212 A ALA 213 n 187 ALA 213 A SER 214 n 188 SER 214 A PHE 215 n 189 PHE 215 A VAL 216 n 190 VAL 216 A ARG 217 n 191 ARG 217 A GLY 218 n 192 GLY 218 A GLY 219 n 193 GLY 219 A CYS 220 n 194 CYS 220 A ALA 221 n 195 ALA 221 A SER 222 n 196 SER 222 A GLY 222 n 197 A GLY 222 A LEU 223 n 198 LEU 223 A TYR 224 n 199 TYR 224 A PRO 225 n 200 PRO 225 A ASP 226 n 201 ASP 226 A ALA 227 n 202 ALA 227 A PHE 228 n 203 PHE 228 A ALA 229 n 204 ALA 229 A PRO 230 n 205 PRO 230 A VAL 231 n 206 VAL 231 A ALA 232 n 207 ALA 232 A GLN 233 n 208 GLN 233 A PHE 234 n 209 PHE 234 A VAL 235 n 210 VAL 235 A ASN 236 n 211 ASN 236 A TRP 237 n 212 TRP 237 A ILE 238 n 213 ILE 238 A ASP 239 n 214 ASP 239 A SER 240 n 215 SER 240 A ILE 241 n 216 ILE 241 A ILE 242 n 217 ILE 242 A GLN 243 n 218 GLN 243 A author_and_software_defined_assembly PISA 1 monomeric A ASN 159 GLYCOSYLATION SITE A ASN 144 ASN A ASN 109 GLYCOSYLATION SITE A ASN 95 ASN 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ARG 20 A N ARG 5 A O GLU 157 A O GLU 142 A N VAL 164 A N VAL 148 A O CYS 182 A O CYS 158 A N THR 183 A N THR 159 A O ASP 226 A O ASP 201 A O ALA 229 A O ALA 204 A N ILE 212 A N ILE 186 A O LEU 208 A O LEU 182 A N CYS 201 A N CYS 179 A O VAL 200 A O VAL 178 A N LEU 137 A N LEU 123 A N CYS 136 A N CYS 122 A O VAL 160 A O VAL 145 A N LEU 35 A N LEU 20 A O GLY 39 A O GLY 23 A N THR 45 A N THR 29 A O MET 53 A O MET 37 A N VAL 52 A N VAL 36 A O LEU 106 A O LEU 92 A O GLN 107 A O GLN 93 A N GLN 86 A N GLN 73 A O PHE 83 A O PHE 70 A N VAL 66 A N VAL 53 A A O ARG 65 A O ARG 52 A N GLN 34 A N GLN 19 1 A HIS 71 -137.11 -57.37 1 A ASN 91 -144.16 50.92 1 A TYR 94 -37.96 119.90 1 A LEU 223 -128.75 -57.27 -1.4269 -0.0000 0.0000 -1.4269 -0.0000 2.8538 0.957 0.925 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.2032 0.1586 0.1608 1.998 24.134 735 14498 14457 5.08 97.16 0.20 1 1.36 MOLECULAR REPLACEMENT 19.02 0.90 1.11 PDB ENTRY 1HNE ML FLAT BULK SOLVENT MODEL 46.018 0.400 1.998 24.134 136 1856 84 0 1636 0.008 1760 1.152 2395 20.883 638 0.074 280 0.004 308 0.2587 0.1963 2.1517 136 2403 86.00 0.2275 0.1702 2.3681 158 2798 100.00 0.2234 0.1565 2.7103 158 2806 100.00 0.1918 0.1544 3.4132 130 2844 100.00 0.1756 0.1484 24.1362 153 2871 100.00 1.998 24.134 3Q77 14498 14498 0.09 1 20.4 11.0 97.2 0.35 2.00 2.07 2.8 1 10.8 79.7 refinement PHENIX 1.6.4_486 phasing AMoRE refinement REFMAC 5.2.0019 data reduction DENZO data scaling SCALEPACK data collection MAR345dtb Structure of human neutrophil elastase in complex with a dihydropyrimidone inhibitor 1 N N 2 N N 3 N N 4 N N 5 N N A ALA 55 A ALA 39 HELX_P A ALA 60 A ALA 44 1 1 6 A ASN 62 A ASN 47 HELX_P A ALA 64 A ALA 50 5 2 4 A A PHE 234 A PHE 209 HELX_P A GLN 243 A GLN 218 1 3 10 disulf 2.032 A CYS 42 A SG CYS 26 1_555 A CYS 58 A SG CYS 42 1_555 disulf 2.037 A CYS 136 A SG CYS 122 1_555 A CYS 201 A SG CYS 179 1_555 disulf 2.032 A CYS 168 A SG CYS 152 1_555 A CYS 182 A SG CYS 158 1_555 disulf 2.043 A CYS 191 A SG CYS 169 1_555 A CYS 220 A SG CYS 194 1_555 covale 1.451 one N-Glycosylation A ASN 109 A ND2 ASN 95 1_555 A NAG 411 C C1 NAG 1_555 covale 1.422 one N-Glycosylation A ASN 159 A ND2 ASN 144 1_555 B NAG 1 B C1 NAG 1_555 covale 1.439 both B NAG 1 B O4 NAG 1_555 B NAG 2 B C1 NAG 1_555 covale 1.438 both B NAG 1 B O6 NAG 1_555 B FUC 3 B C1 FUC 1_555 HYDROLASE/HYDROLASE INHIBITOR trypsin family fold, protease, HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR complex ELNE_HUMAN UNP 1 30 P08246 IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQVFAVQRIFENGY DPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTSLCRRSNVCTL VRGRQAGVCFGDSGSPLVCNGLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSIIQ 30 247 3Q77 16 243 P08246 A 1 1 218 8 7 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ARG 20 A ARG 5 A ARG 21 A ARG 6 A GLN 156 A GLN 141 A VAL 164 A VAL 148 A VAL 181 A VAL 157 A LEU 184 A LEU 160 A ASP 226 A ASP 201 A PRO 230 A PRO 205 A LEU 208 A LEU 182 A PHE 215 A PHE 189 A PRO 198 A PRO 176 A CYS 201 A CYS 179 A GLN 135 A GLN 121 A GLY 140 A GLY 126 A GLN 156 A GLN 141 A VAL 164 A VAL 148 A MET 30 A MET 15 A LEU 35 A LEU 20 A GLY 39 A GLY 23 A ALA 48 A ALA 32 A PHE 51 A PHE 35 A SER 54 A SER 38 A VAL 104 A VAL 90 A LEU 108 A LEU 94 A GLN 81 A GLN 68 A GLU 90 A GLU 77 A ARG 65 A ARG 52 A LEU 68 A LEU 55 A A MET 30 A MET 15 A LEU 35 A LEU 20 173 P 63