0.067555 -0.027239 -0.004632 0.000000 0.058103 -0.005066 0.000000 0.000000 0.041737 0.00000 0.00000 0.00000 Bowling, J.J. Fronczek, F.R. Hamann, M.T. Li, H. Jung, J.H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 83.19 84.10 68.04 14.8028 18.5573 24.1784 C3 H7 N O2 89.093 y ALANINE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C H4 O 32.042 METHANOL non-polymer C5 H7 N O3 129.114 n PYROGLUTAMIC ACID L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be published 0353 An Uncommon Crystal Structure of a Marine Knottin Peptide from Asteropus sp. 90.0 1 MiraCol capillary optic CCD 2010-11-05 APEX II CCD Graphite (002) \f and \w scans M x-ray 1 1.54178 1.0 1.54178 SEALED TUBE OTHER 3904.384 Asteropsin A 1 nat polymer 32.042 METHANOL 11 syn non-polymer 18.015 water 10 nat water ABU8-1 no yes (PCA)GCAFEGESCNVQFYPCCPGLGLTCIPGNPDGTCYYL QGCAFEGESCNVQFYPCCPGLGLTCIPGNPDGTCYYL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n whole extract sample 350938 Asteropus 1 1.5634 21.3237 CD3OH-H2O, NMR tube, temperature 295K 295 software entity_poly pdbx_struct_mod_residue struct_conn repository Initial release Database references Refinement description Derived calculations Polymer sequence 1 0 2012-04-18 1 1 2012-10-31 1 2 2017-11-08 2 0 2019-12-25 _entity_poly.pdbx_seq_one_letter_code_can _pdbx_struct_mod_residue.parent_comp_id _struct_conn.pdbx_leaving_atom_flag RCSB Y PDBJ 2011-01-06 REL REL MOH METHANOL HOH water MOH 1001 2 MOH MOH 1001 A MOH 1002 2 MOH MOH 1002 A MOH 1003 2 MOH MOH 1003 A MOH 1004 2 MOH MOH 1004 A MOH 1005 2 MOH MOH 1005 A MOH 1006 2 MOH MOH 1006 A MOH 1007 2 MOH MOH 1007 A MOH 1008 2 MOH MOH 1008 A MOH 1009 2 MOH MOH 1009 A MOH 1010 2 MOH MOH 1010 A MOH 1011 2 MOH MOH 1011 A HOH 101 3 HOH HOH 101 A HOH 102 3 HOH HOH 102 A HOH 103 3 HOH HOH 103 A HOH 104 3 HOH HOH 104 A HOH 105 3 HOH HOH 105 A HOH 106 3 HOH HOH 106 A HOH 107 3 HOH HOH 107 A HOH 108 3 HOH HOH 108 A HOH 109 3 HOH HOH 109 A HOH 110 3 HOH HOH 110 A PCA 1 n 1 PCA 1 A GLY 2 n 2 GLY 2 A CYS 3 n 3 CYS 3 A ALA 4 n 4 ALA 4 A PHE 5 n 5 PHE 5 A GLU 6 n 6 GLU 6 A GLY 7 n 7 GLY 7 A GLU 8 n 8 GLU 8 A SER 9 n 9 SER 9 A CYS 10 n 10 CYS 10 A ASN 11 n 11 ASN 11 A VAL 12 n 12 VAL 12 A GLN 13 n 13 GLN 13 A PHE 14 n 14 PHE 14 A TYR 15 n 15 TYR 15 A PRO 16 n 16 PRO 16 A CYS 17 n 17 CYS 17 A CYS 18 n 18 CYS 18 A PRO 19 n 19 PRO 19 A GLY 20 n 20 GLY 20 A LEU 21 n 21 LEU 21 A GLY 22 n 22 GLY 22 A LEU 23 n 23 LEU 23 A THR 24 n 24 THR 24 A CYS 25 n 25 CYS 25 A ILE 26 n 26 ILE 26 A PRO 27 n 27 PRO 27 A GLY 28 n 28 GLY 28 A ASN 29 n 29 ASN 29 A PRO 30 n 30 PRO 30 A ASP 31 n 31 ASP 31 A GLY 32 n 32 GLY 32 A THR 33 n 33 THR 33 A CYS 34 n 34 CYS 34 A TYR 35 n 35 TYR 35 A TYR 36 n 36 TYR 36 A LEU 37 n 37 LEU 37 A 0.0795 0.0926 23213 author_and_software_defined_assembly PISA 1 monomeric A PCA 1 PYROGLUTAMIC ACID A PCA 1 GLN 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N CYS 10 A N CYS 10 A O GLY 32 A O GLY 32 A O TYR 35 A O TYR 35 A N THR 24 A N THR 24 1 -4.12 0.60 121.00 116.88 A A A CB CG CD2 TYR TYR TYR 15 15 15 N 1 6.69 0.90 118.30 124.99 A A A CB CG OD1 ASP ASP ASP 31 31 31 N 1 -6.25 0.90 118.30 112.05 A A A CB CG OD2 ASP ASP ASP 31 31 31 N 6.2214 1. Patterson to locate S atoms; 2. The sf file contains Friedel pairs. 0.0926 0.87 17.15 2725 27756 23213 6 100.0 1.000 1.000 RANDOM 1 FREE R 0.0 Engh & Huber 0 238.00 302.00 0.87 17.15 10 302 22 0 270 0.000 0.000 0.000 0.0232 0.000 0.000 0.000 0.000 0.000 0.000 0.87 17.15 3Q8J 27756 0.048 1 11.68 2.41 97.7 0.157 0.87 0.97 4.40 1 1.00 60.5 refinement George M. Sheldrick gsheldr@shelx.uni-ac.gwdg.de Fortran_77 http://shelx.uni-ac.gwdg.de/SHELX/ SHELX package data extraction PDB deposit@deposit.rcsb.org June 10, 2010 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.10 refinement SHELXL refinement SHELXL-97 Asteropsin A Crystal Structure of Asteropsin A from Marine Sponge Asteropus sp. 1 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 3 N N disulf 2.030 A CYS 3 A SG CYS 3 1_555 A CYS 18 A SG CYS 18 1_555 disulf 2.043 A CYS 10 A SG CYS 10 1_555 A CYS 25 A SG CYS 25 1_555 disulf 2.047 A CYS 17 A SG CYS 17 1_555 A CYS 34 A SG CYS 34 1_555 covale 1.330 both A PCA 1 A C PCA 1 1_555 A GLY 2 A N GLY 2 1_555 TOXIN cystine knot, marine sponge, MARINE KNOTTIN, TOXIN A ILE 26 A ILE 26 1 A PRO 27 A PRO 27 -2.40 A ASN 29 A ASN 29 1 A PRO 30 A PRO 30 8.56 I1SB10_9METZ UNP 1 1 I1SB10 EGCAFEGESCNVQFYPCCPGLGLTCIPGNPDGTCYYL 1 37 3Q8J 1 37 I1SB10 A 1 1 37 3 anti-parallel anti-parallel A SER 9 A SER 9 A ASN 11 A ASN 11 A ASP 31 A ASP 31 A TYR 36 A TYR 36 A LEU 23 A LEU 23 A PRO 27 A PRO 27 1 P 1