0.067555
-0.027239
-0.004632
0.000000
0.058103
-0.005066
0.000000
0.000000
0.041737
0.00000
0.00000
0.00000
Bowling, J.J.
Fronczek, F.R.
Hamann, M.T.
Li, H.
Jung, J.H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
83.19
84.10
68.04
14.8028
18.5573
24.1784
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C H4 O
32.042
METHANOL
non-polymer
C5 H7 N O3
129.114
n
PYROGLUTAMIC ACID
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be published
0353
An Uncommon Crystal Structure of a Marine Knottin Peptide from Asteropus sp.
90.0
1
MiraCol capillary optic
CCD
2010-11-05
APEX II CCD
Graphite (002)
\f and \w scans
M
x-ray
1
1.54178
1.0
1.54178
SEALED TUBE
OTHER
3904.384
Asteropsin A
1
nat
polymer
32.042
METHANOL
11
syn
non-polymer
18.015
water
10
nat
water
ABU8-1
no
yes
(PCA)GCAFEGESCNVQFYPCCPGLGLTCIPGNPDGTCYYL
QGCAFEGESCNVQFYPCCPGLGLTCIPGNPDGTCYYL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
whole extract
sample
350938
Asteropus
1
1.5634
21.3237
CD3OH-H2O, NMR tube, temperature 295K
295
software
entity_poly
pdbx_struct_mod_residue
struct_conn
repository
Initial release
Database references
Refinement description
Derived calculations
Polymer sequence
1
0
2012-04-18
1
1
2012-10-31
1
2
2017-11-08
2
0
2019-12-25
_entity_poly.pdbx_seq_one_letter_code_can
_pdbx_struct_mod_residue.parent_comp_id
_struct_conn.pdbx_leaving_atom_flag
RCSB
Y
PDBJ
2011-01-06
REL
REL
MOH
METHANOL
HOH
water
MOH
1001
2
MOH
MOH
1001
A
MOH
1002
2
MOH
MOH
1002
A
MOH
1003
2
MOH
MOH
1003
A
MOH
1004
2
MOH
MOH
1004
A
MOH
1005
2
MOH
MOH
1005
A
MOH
1006
2
MOH
MOH
1006
A
MOH
1007
2
MOH
MOH
1007
A
MOH
1008
2
MOH
MOH
1008
A
MOH
1009
2
MOH
MOH
1009
A
MOH
1010
2
MOH
MOH
1010
A
MOH
1011
2
MOH
MOH
1011
A
HOH
101
3
HOH
HOH
101
A
HOH
102
3
HOH
HOH
102
A
HOH
103
3
HOH
HOH
103
A
HOH
104
3
HOH
HOH
104
A
HOH
105
3
HOH
HOH
105
A
HOH
106
3
HOH
HOH
106
A
HOH
107
3
HOH
HOH
107
A
HOH
108
3
HOH
HOH
108
A
HOH
109
3
HOH
HOH
109
A
HOH
110
3
HOH
HOH
110
A
PCA
1
n
1
PCA
1
A
GLY
2
n
2
GLY
2
A
CYS
3
n
3
CYS
3
A
ALA
4
n
4
ALA
4
A
PHE
5
n
5
PHE
5
A
GLU
6
n
6
GLU
6
A
GLY
7
n
7
GLY
7
A
GLU
8
n
8
GLU
8
A
SER
9
n
9
SER
9
A
CYS
10
n
10
CYS
10
A
ASN
11
n
11
ASN
11
A
VAL
12
n
12
VAL
12
A
GLN
13
n
13
GLN
13
A
PHE
14
n
14
PHE
14
A
TYR
15
n
15
TYR
15
A
PRO
16
n
16
PRO
16
A
CYS
17
n
17
CYS
17
A
CYS
18
n
18
CYS
18
A
PRO
19
n
19
PRO
19
A
GLY
20
n
20
GLY
20
A
LEU
21
n
21
LEU
21
A
GLY
22
n
22
GLY
22
A
LEU
23
n
23
LEU
23
A
THR
24
n
24
THR
24
A
CYS
25
n
25
CYS
25
A
ILE
26
n
26
ILE
26
A
PRO
27
n
27
PRO
27
A
GLY
28
n
28
GLY
28
A
ASN
29
n
29
ASN
29
A
PRO
30
n
30
PRO
30
A
ASP
31
n
31
ASP
31
A
GLY
32
n
32
GLY
32
A
THR
33
n
33
THR
33
A
CYS
34
n
34
CYS
34
A
TYR
35
n
35
TYR
35
A
TYR
36
n
36
TYR
36
A
LEU
37
n
37
LEU
37
A
0.0795
0.0926
23213
author_and_software_defined_assembly
PISA
1
monomeric
A
PCA
1
PYROGLUTAMIC ACID
A
PCA
1
GLN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
CYS
10
A
N
CYS
10
A
O
GLY
32
A
O
GLY
32
A
O
TYR
35
A
O
TYR
35
A
N
THR
24
A
N
THR
24
1
-4.12
0.60
121.00
116.88
A
A
A
CB
CG
CD2
TYR
TYR
TYR
15
15
15
N
1
6.69
0.90
118.30
124.99
A
A
A
CB
CG
OD1
ASP
ASP
ASP
31
31
31
N
1
-6.25
0.90
118.30
112.05
A
A
A
CB
CG
OD2
ASP
ASP
ASP
31
31
31
N
6.2214
1. Patterson to locate S atoms;
2. The sf file contains Friedel pairs.
0.0926
0.87
17.15
2725
27756
23213
6
100.0
1.000
1.000
RANDOM
1
FREE R
0.0
Engh & Huber
0
238.00
302.00
0.87
17.15
10
302
22
0
270
0.000
0.000
0.000
0.0232
0.000
0.000
0.000
0.000
0.000
0.000
0.87
17.15
3Q8J
27756
0.048
1
11.68
2.41
97.7
0.157
0.87
0.97
4.40
1
1.00
60.5
refinement
George M. Sheldrick
gsheldr@shelx.uni-ac.gwdg.de
Fortran_77
http://shelx.uni-ac.gwdg.de/SHELX/
SHELX
package
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
refinement
SHELXL
refinement
SHELXL-97
Asteropsin A
Crystal Structure of Asteropsin A from Marine Sponge Asteropus sp.
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
disulf
2.030
A
CYS
3
A
SG
CYS
3
1_555
A
CYS
18
A
SG
CYS
18
1_555
disulf
2.043
A
CYS
10
A
SG
CYS
10
1_555
A
CYS
25
A
SG
CYS
25
1_555
disulf
2.047
A
CYS
17
A
SG
CYS
17
1_555
A
CYS
34
A
SG
CYS
34
1_555
covale
1.330
both
A
PCA
1
A
C
PCA
1
1_555
A
GLY
2
A
N
GLY
2
1_555
TOXIN
cystine knot, marine sponge, MARINE KNOTTIN, TOXIN
A
ILE
26
A
ILE
26
1
A
PRO
27
A
PRO
27
-2.40
A
ASN
29
A
ASN
29
1
A
PRO
30
A
PRO
30
8.56
I1SB10_9METZ
UNP
1
1
I1SB10
EGCAFEGESCNVQFYPCCPGLGLTCIPGNPDGTCYYL
1
37
3Q8J
1
37
I1SB10
A
1
1
37
3
anti-parallel
anti-parallel
A
SER
9
A
SER
9
A
ASN
11
A
ASN
11
A
ASP
31
A
ASP
31
A
TYR
36
A
TYR
36
A
LEU
23
A
LEU
23
A
PRO
27
A
PRO
27
1
P 1