data_3Q9G # _entry.id 3Q9G # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3Q9G pdb_00003q9g 10.2210/pdb3q9g/pdb RCSB RCSB063361 ? ? WWPDB D_1000063361 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3Q9H . unspecified PDB 3Q9I . unspecified PDB 3Q9J . unspecified # _pdbx_database_status.entry_id 3Q9G _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-01-07 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Liu, C.' 1 'Sawaya, M.R.' 2 'Eisenberg, D.' 3 'Nowick, J.S.' 4 'Cheng, P.' 5 'Zheng, J.' 6 # _citation.id primary _citation.title 'Characteristics of Amyloid-Related Oligomers Revealed by Crystal Structures of Macrocyclic beta-Sheet Mimics.' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 133 _citation.page_first 6736 _citation.page_last 6744 _citation.year 2011 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21473620 _citation.pdbx_database_id_DOI 10.1021/ja200222n # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Liu, C.' 1 ? primary 'Sawaya, M.R.' 2 ? primary 'Cheng, P.N.' 3 ? primary 'Zheng, J.' 4 ? primary 'Nowick, J.S.' 5 ? primary 'Eisenberg, D.' 6 ? # _cell.length_a 32.867 _cell.length_b 32.867 _cell.length_c 55.413 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3Q9G _cell.pdbx_unique_axis ? _cell.Z_PDB 16 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'I 41 2 2' _symmetry.entry_id 3Q9G _symmetry.Int_Tables_number 98 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Cyclic pseudo-peptide VQIV(4BF)(ORN)(HAO)KL(ORN)' 1389.458 1 ? ? ? ;VQIVY segment from Alzheimer's tau displayed on 42-membered macrocycle scaffold ; 2 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 3 non-polymer syn 'ACETIC ACID' 60.052 1 ? ? ? ? 4 water nat water 18.015 12 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'VQIV(4BF)(ORN)(HAO)KL(ORN)' _entity_poly.pdbx_seq_one_letter_code_can VQIVYAXKLA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 GLN n 1 3 ILE n 1 4 VAL n 1 5 4BF n 1 6 ORN n 1 7 HAO n 1 8 LYS n 1 9 LEU n 1 10 ORN n # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3Q9G _struct_ref.pdbx_db_accession 3Q9G _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code VQIVYAXKLA _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3Q9G _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 10 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3Q9G _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 10 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 4BF 'L-peptide linking' n 4-BROMO-L-PHENYLALANINE P-BROMO-L-PHENYLALANINE 'C9 H10 Br N O2' 244.085 ACY non-polymer . 'ACETIC ACID' ? 'C2 H4 O2' 60.052 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HAO peptide-like . '{[3-(hydrazinocarbonyl)-4-methoxyphenyl]amino}(oxo)acetic acid' ? 'C10 H11 N3 O5' 253.211 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 ORN 'L-peptide linking' n L-ornithine ? 'C5 H12 N2 O2' 132.161 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3Q9G _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.69 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 54.32 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.2 _exptl_crystal_grow.temp 291 _exptl_crystal_grow.pdbx_details 'Na/K phosphate pH 6.2, 35% (v/v) (+/-)-2-Methyl-2,4-pentanediol, VAPOR DIFFUSION, SITTING DROP, temperature 291K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.pdbx_collection_date 2010-03-25 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU FR-D' _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 3Q9G _reflns.d_resolution_high 2.050 _reflns.d_resolution_low 80.000 _reflns.number_obs 1819 _reflns.pdbx_Rmerge_I_obs 0.046 _reflns.pdbx_netI_over_sigmaI 26.400 _reflns.pdbx_chi_squared 0.975 _reflns.pdbx_redundancy 7.100 _reflns.percent_possible_obs 98.800 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.050 2.120 ? ? ? 0.104 ? ? 0.922 6.900 ? 180 97.800 1 1 2.120 2.210 ? ? ? 0.099 ? ? 0.735 6.900 ? 175 97.800 2 1 2.210 2.310 ? ? ? 0.088 ? ? 1.352 7.100 ? 179 97.800 3 1 2.310 2.430 ? ? ? 0.081 ? ? 0.947 7.000 ? 183 99.500 4 1 2.430 2.580 ? ? ? 0.075 ? ? 1.015 7.200 ? 186 98.900 5 1 2.580 2.780 ? ? ? 0.060 ? ? 0.876 7.100 ? 189 99.000 6 1 2.780 3.060 ? ? ? 0.054 ? ? 0.942 7.200 ? 176 99.400 7 1 3.060 3.510 ? ? ? 0.040 ? ? 0.944 7.200 ? 174 98.300 8 1 3.510 4.420 ? ? ? 0.037 ? ? 0.993 7.300 ? 188 100.000 9 1 4.420 80.000 ? ? ? 0.031 ? ? 1.007 7.100 ? 189 99.000 10 1 # _refine.entry_id 3Q9G _refine.ls_d_res_high 2.0500 _refine.ls_d_res_low 28.2700 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.2500 _refine.ls_number_reflns_obs 1068 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1804 _refine.ls_R_factor_R_work 0.1790 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2027 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.7000 _refine.ls_number_reflns_R_free 61 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 17.8411 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.2200 _refine.aniso_B[2][2] 0.2200 _refine.aniso_B[3][3] -0.4500 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9530 _refine.correlation_coeff_Fo_to_Fc_free 0.9610 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free 0.1440 _refine.overall_SU_ML 0.0940 _refine.overall_SU_B 6.6910 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 63.050 _refine.B_iso_min 2.000 _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 93 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 12 _refine_hist.number_atoms_total 115 _refine_hist.d_res_high 2.0500 _refine_hist.d_res_low 28.2700 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 103 0.017 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 122 1.309 2.375 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5 7.215 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 2 32.760 25.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13 17.645 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 13 0.062 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 49 0.007 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 40 0.692 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 55 1.130 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 63 2.745 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 67 3.524 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.0480 _refine_ls_shell.d_res_low 2.1010 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 96.1000 _refine_ls_shell.number_reflns_R_work 71 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2240 _refine_ls_shell.R_factor_R_free 0.4430 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 3 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 74 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3Q9G _struct.title ;VQIVY segment from Alzheimer's tau displayed on 42-membered macrocycle scaffold ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3Q9G _struct_keywords.text 'beta sheet tetramer, beta strand, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A VAL 1 N ? ? ? 1_555 A ORN 10 C ? ? A VAL 1 A ORN 10 1_555 ? ? ? ? ? ? ? 1.273 ? ? covale2 covale both ? A VAL 4 C ? ? ? 1_555 A 4BF 5 N ? ? A VAL 4 A 4BF 5 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale3 covale both ? A 4BF 5 C ? ? ? 1_555 A ORN 6 NE ? ? A 4BF 5 A ORN 6 1_555 ? ? ? ? ? ? ? 1.268 ? ? covale4 covale both ? A ORN 6 C ? ? ? 1_555 A HAO 7 N ? ? A ORN 6 A HAO 7 1_555 ? ? ? ? ? ? ? 1.353 ? ? covale5 covale both ? A HAO 7 C ? ? ? 1_555 A LYS 8 N ? ? A HAO 7 A LYS 8 1_555 ? ? ? ? ? ? ? 1.248 ? ? covale6 covale both ? A LEU 9 C ? ? ? 1_555 A ORN 10 NE ? ? A LEU 9 A ORN 10 1_555 ? ? ? ? ? ? ? 1.278 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GOL 11 ? 4 'BINDING SITE FOR RESIDUE GOL A 11' AC2 Software A ACY 12 ? 4 'BINDING SITE FOR RESIDUE ACY A 12' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 GLN A 2 ? GLN A 2 . ? 1_555 ? 2 AC1 4 VAL A 4 ? VAL A 4 . ? 1_555 ? 3 AC1 4 HAO A 7 ? HAO A 7 . ? 5_655 ? 4 AC1 4 LEU A 9 ? LEU A 9 . ? 3_535 ? 5 AC2 4 LYS A 8 ? LYS A 8 . ? 5_655 ? 6 AC2 4 LYS A 8 ? LYS A 8 . ? 3_535 ? 7 AC2 4 ORN A 10 ? ORN A 10 . ? 3_535 ? 8 AC2 4 HOH D . ? HOH A 15 . ? 5_655 ? # _atom_sites.entry_id 3Q9G _atom_sites.fract_transf_matrix[1][1] 0.030426 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030426 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018046 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol BR C N O # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 N N . VAL A 1 1 ? 31.272 -26.544 17.721 1.00 14.51 ? 1 VAL A N 1 ATOM 2 C CA . VAL A 1 1 ? 32.085 -25.446 18.322 1.00 13.41 ? 1 VAL A CA 1 ATOM 3 C C . VAL A 1 1 ? 31.192 -24.295 18.800 1.00 12.93 ? 1 VAL A C 1 ATOM 4 O O . VAL A 1 1 ? 30.244 -23.901 18.097 1.00 12.10 ? 1 VAL A O 1 ATOM 5 C CB . VAL A 1 1 ? 33.152 -24.898 17.328 1.00 13.14 ? 1 VAL A CB 1 ATOM 6 C CG1 . VAL A 1 1 ? 34.225 -25.946 17.049 1.00 13.03 ? 1 VAL A CG1 1 ATOM 7 C CG2 . VAL A 1 1 ? 32.491 -24.408 16.025 1.00 14.16 ? 1 VAL A CG2 1 ATOM 8 N N . GLN A 1 2 ? 31.496 -23.773 19.996 1.00 12.19 ? 2 GLN A N 1 ATOM 9 C CA . GLN A 1 2 ? 30.872 -22.552 20.495 1.00 12.15 ? 2 GLN A CA 1 ATOM 10 C C . GLN A 1 2 ? 31.243 -21.347 19.634 1.00 12.45 ? 2 GLN A C 1 ATOM 11 O O . GLN A 1 2 ? 32.404 -21.179 19.256 1.00 12.58 ? 2 GLN A O 1 ATOM 12 C CB . GLN A 1 2 ? 31.248 -22.301 21.956 1.00 12.26 ? 2 GLN A CB 1 ATOM 13 C CG . GLN A 1 2 ? 30.565 -21.072 22.592 1.00 14.16 ? 2 GLN A CG 1 ATOM 14 C CD . GLN A 1 2 ? 28.993 -21.186 22.659 1.00 19.54 ? 2 GLN A CD 1 ATOM 15 O OE1 . GLN A 1 2 ? 28.444 -22.220 23.091 1.00 18.93 ? 2 GLN A OE1 1 ATOM 16 N NE2 . GLN A 1 2 ? 28.280 -20.084 22.257 1.00 15.57 ? 2 GLN A NE2 1 ATOM 17 N N . ILE A 1 3 ? 30.232 -20.547 19.280 1.00 12.10 ? 3 ILE A N 1 ATOM 18 C CA . ILE A 1 3 ? 30.414 -19.318 18.491 1.00 12.79 ? 3 ILE A CA 1 ATOM 19 C C . ILE A 1 3 ? 29.982 -18.105 19.321 1.00 12.00 ? 3 ILE A C 1 ATOM 20 O O . ILE A 1 3 ? 28.870 -18.067 19.864 1.00 11.84 ? 3 ILE A O 1 ATOM 21 C CB . ILE A 1 3 ? 29.566 -19.329 17.170 1.00 12.93 ? 3 ILE A CB 1 ATOM 22 C CG1 . ILE A 1 3 ? 29.879 -20.562 16.305 1.00 13.25 ? 3 ILE A CG1 1 ATOM 23 C CG2 . ILE A 1 3 ? 29.779 -18.027 16.367 1.00 13.87 ? 3 ILE A CG2 1 ATOM 24 C CD1 . ILE A 1 3 ? 31.147 -20.468 15.562 1.00 14.08 ? 3 ILE A CD1 1 ATOM 25 N N . VAL A 1 4 ? 30.885 -17.138 19.446 1.00 12.18 ? 4 VAL A N 1 ATOM 26 C CA . VAL A 1 4 ? 30.547 -15.829 19.972 1.00 11.11 ? 4 VAL A CA 1 ATOM 27 C C . VAL A 1 4 ? 30.986 -14.829 18.958 1.00 11.72 ? 4 VAL A C 1 ATOM 28 O O . VAL A 1 4 ? 32.068 -14.942 18.400 1.00 12.12 ? 4 VAL A O 1 ATOM 29 C CB . VAL A 1 4 ? 31.253 -15.533 21.324 1.00 11.07 ? 4 VAL A CB 1 ATOM 30 C CG1 . VAL A 1 4 ? 30.923 -14.080 21.813 1.00 10.47 ? 4 VAL A CG1 1 ATOM 31 C CG2 . VAL A 1 4 ? 30.857 -16.574 22.391 1.00 9.60 ? 4 VAL A CG2 1 HETATM 32 C CD1 . 4BF A 1 5 ? 31.293 -12.494 14.543 1.00 13.96 ? 5 4BF A CD1 1 HETATM 33 C CE1 . 4BF A 1 5 ? 31.684 -11.618 13.548 1.00 12.83 ? 5 4BF A CE1 1 HETATM 34 C CZ . 4BF A 1 5 ? 30.931 -10.500 13.286 1.00 17.59 ? 5 4BF A CZ 1 HETATM 35 BR BR . 4BF A 1 5 ? 31.585 -9.353 11.917 1.00 27.64 ? 5 4BF A BR 1 HETATM 36 C CE2 . 4BF A 1 5 ? 29.812 -10.219 14.019 1.00 13.80 ? 5 4BF A CE2 1 HETATM 37 C CD2 . 4BF A 1 5 ? 29.430 -11.070 15.025 1.00 15.08 ? 5 4BF A CD2 1 HETATM 38 C CG . 4BF A 1 5 ? 30.157 -12.239 15.290 1.00 12.90 ? 5 4BF A CG 1 HETATM 39 C CB . 4BF A 1 5 ? 29.750 -13.157 16.400 1.00 11.58 ? 5 4BF A CB 1 HETATM 40 C CA . 4BF A 1 5 ? 30.437 -12.852 17.723 1.00 11.71 ? 5 4BF A CA 1 HETATM 41 N N . 4BF A 1 5 ? 30.127 -13.864 18.682 1.00 11.84 ? 5 4BF A N 1 HETATM 42 C C . 4BF A 1 5 ? 29.973 -11.518 18.241 1.00 11.71 ? 5 4BF A C 1 HETATM 43 O O . 4BF A 1 5 ? 28.793 -11.190 18.122 1.00 12.25 ? 5 4BF A O 1 HETATM 44 N N . ORN A 1 6 ? 27.070 -9.270 21.864 1.00 10.65 ? 6 ORN A N 1 HETATM 45 C CA . ORN A 1 6 ? 27.536 -10.251 20.938 1.00 8.68 ? 6 ORN A CA 1 HETATM 46 C CB . ORN A 1 6 ? 28.890 -10.763 21.431 1.00 9.44 ? 6 ORN A CB 1 HETATM 47 C CG . ORN A 1 6 ? 30.015 -9.724 21.221 1.00 10.05 ? 6 ORN A CG 1 HETATM 48 C CD . ORN A 1 6 ? 30.331 -9.465 19.732 1.00 10.34 ? 6 ORN A CD 1 HETATM 49 N NE . ORN A 1 6 ? 30.580 -10.726 19.023 1.00 11.24 ? 6 ORN A NE 1 HETATM 50 C C . ORN A 1 6 ? 26.527 -11.366 20.883 1.00 7.55 ? 6 ORN A C 1 HETATM 51 O O . ORN A 1 6 ? 25.713 -11.497 21.777 0.50 2.00 ? 6 ORN A O 1 HETATM 52 N N . HAO A 1 7 ? 26.482 -12.033 19.707 1.00 8.96 ? 7 HAO A N 1 HETATM 53 N N9 . HAO A 1 7 ? 25.809 -13.085 19.559 1.00 11.38 ? 7 HAO A N9 1 HETATM 54 C C10 . HAO A 1 7 ? 26.357 -14.319 19.494 1.00 10.02 ? 7 HAO A C10 1 HETATM 55 O O11 . HAO A 1 7 ? 27.565 -14.519 19.590 1.00 9.55 ? 7 HAO A O11 1 HETATM 56 C CA . HAO A 1 7 ? 25.477 -15.525 19.238 1.00 10.76 ? 7 HAO A CA 1 HETATM 57 C C13 . HAO A 1 7 ? 26.068 -16.784 19.364 1.00 10.34 ? 7 HAO A C13 1 HETATM 58 C C14 . HAO A 1 7 ? 24.117 -15.423 18.871 1.00 10.17 ? 7 HAO A C14 1 HETATM 59 C C15 . HAO A 1 7 ? 22.148 -14.117 18.202 1.00 10.17 ? 7 HAO A C15 1 HETATM 60 O O15 . HAO A 1 7 ? 23.498 -14.199 18.722 1.00 11.86 ? 7 HAO A O15 1 HETATM 61 C C17 . HAO A 1 7 ? 23.375 -16.583 18.625 1.00 10.84 ? 7 HAO A C17 1 HETATM 62 C C18 . HAO A 1 7 ? 23.979 -17.841 18.765 1.00 12.06 ? 7 HAO A C18 1 HETATM 63 C C19 . HAO A 1 7 ? 25.324 -17.940 19.148 1.00 9.32 ? 7 HAO A C19 1 HETATM 64 N N20 . HAO A 1 7 ? 25.975 -19.172 19.267 1.00 9.22 ? 7 HAO A N20 1 HETATM 65 C C21 . HAO A 1 7 ? 25.380 -20.387 19.203 1.00 12.12 ? 7 HAO A C21 1 HETATM 66 O O22 . HAO A 1 7 ? 24.173 -20.598 19.061 1.00 9.46 ? 7 HAO A O22 1 HETATM 67 C C . HAO A 1 7 ? 26.302 -21.517 19.350 1.00 11.88 ? 7 HAO A C 1 HETATM 68 O O . HAO A 1 7 ? 27.491 -21.297 19.314 1.00 13.21 ? 7 HAO A O 1 ATOM 69 N N . LYS A 1 8 ? 25.916 -22.662 19.039 1.00 12.46 ? 8 LYS A N 1 ATOM 70 C CA . LYS A 1 8 ? 26.810 -23.810 18.910 1.00 13.52 ? 8 LYS A CA 1 ATOM 71 C C . LYS A 1 8 ? 26.673 -24.408 17.527 1.00 12.89 ? 8 LYS A C 1 ATOM 72 O O . LYS A 1 8 ? 25.591 -24.856 17.149 1.00 13.54 ? 8 LYS A O 1 ATOM 73 C CB . LYS A 1 8 ? 26.472 -24.843 19.970 1.00 14.38 ? 8 LYS A CB 1 ATOM 74 C CG . LYS A 1 8 ? 27.423 -26.006 20.012 1.00 19.37 ? 8 LYS A CG 1 ATOM 75 C CD . LYS A 1 8 ? 27.550 -26.539 21.401 1.00 27.68 ? 8 LYS A CD 1 ATOM 76 C CE . LYS A 1 8 ? 28.905 -26.229 21.965 1.00 32.17 ? 8 LYS A CE 1 ATOM 77 N NZ . LYS A 1 8 ? 28.951 -26.583 23.416 1.00 36.90 ? 8 LYS A NZ 1 ATOM 78 N N . LEU A 1 9 ? 27.767 -24.397 16.761 1.00 12.71 ? 9 LEU A N 1 ATOM 79 C CA . LEU A 1 9 ? 27.753 -24.865 15.353 1.00 12.66 ? 9 LEU A CA 1 ATOM 80 C C . LEU A 1 9 ? 28.241 -26.316 15.249 1.00 12.72 ? 9 LEU A C 1 ATOM 81 O O . LEU A 1 9 ? 29.454 -26.580 15.303 1.00 11.84 ? 9 LEU A O 1 ATOM 82 C CB . LEU A 1 9 ? 28.616 -23.946 14.455 1.00 12.47 ? 9 LEU A CB 1 ATOM 83 C CG . LEU A 1 9 ? 28.876 -24.393 12.993 1.00 12.32 ? 9 LEU A CG 1 ATOM 84 C CD1 . LEU A 1 9 ? 27.573 -24.490 12.218 1.00 12.44 ? 9 LEU A CD1 1 ATOM 85 C CD2 . LEU A 1 9 ? 29.862 -23.448 12.289 1.00 10.18 ? 9 LEU A CD2 1 HETATM 86 N N . ORN A 1 10 ? 30.588 -30.048 17.953 1.00 18.00 ? 10 ORN A N 1 HETATM 87 C CA . ORN A 1 10 ? 30.125 -28.721 17.577 1.00 17.65 ? 10 ORN A CA 1 HETATM 88 C CB . ORN A 1 10 ? 28.666 -28.540 17.964 1.00 13.94 ? 10 ORN A CB 1 HETATM 89 C CG . ORN A 1 10 ? 27.716 -29.192 16.953 1.00 12.81 ? 10 ORN A CG 1 HETATM 90 C CD . ORN A 1 10 ? 27.960 -28.745 15.523 1.00 13.05 ? 10 ORN A CD 1 HETATM 91 N NE . ORN A 1 10 ? 27.519 -27.364 15.361 1.00 12.93 ? 10 ORN A NE 1 HETATM 92 C C . ORN A 1 10 ? 30.977 -27.661 18.255 1.00 17.33 ? 10 ORN A C 1 HETATM 93 O O . ORN A 1 10 ? 31.686 -27.962 19.210 1.00 22.51 ? 10 ORN A O 1 HETATM 94 C C1 . GOL B 2 . ? 28.248 -18.681 26.423 1.00 38.50 ? 11 GOL A C1 1 HETATM 95 O O1 . GOL B 2 . ? 29.039 -19.319 25.445 1.00 39.86 ? 11 GOL A O1 1 HETATM 96 C C2 . GOL B 2 . ? 27.896 -17.267 25.980 1.00 38.97 ? 11 GOL A C2 1 HETATM 97 O O2 . GOL B 2 . ? 29.054 -16.615 25.499 1.00 38.61 ? 11 GOL A O2 1 HETATM 98 C C3 . GOL B 2 . ? 27.443 -16.488 27.179 1.00 39.19 ? 11 GOL A C3 1 HETATM 99 O O3 . GOL B 2 . ? 28.582 -16.328 28.000 1.00 41.36 ? 11 GOL A O3 1 HETATM 100 C C . ACY C 3 . ? 27.504 -24.601 26.895 1.00 62.60 ? 12 ACY A C 1 HETATM 101 O O . ACY C 3 . ? 26.770 -24.901 25.928 1.00 62.66 ? 12 ACY A O 1 HETATM 102 O OXT . ACY C 3 . ? 28.717 -24.298 26.774 1.00 63.05 ? 12 ACY A OXT 1 HETATM 103 C CH3 . ACY C 3 . ? 26.906 -24.619 28.274 1.00 61.80 ? 12 ACY A CH3 1 HETATM 104 O O . HOH D 4 . ? 24.684 -8.067 20.634 0.50 10.54 ? 13 HOH A O 1 HETATM 105 O O . HOH D 4 . ? 35.297 -27.094 20.479 1.00 38.92 ? 14 HOH A O 1 HETATM 106 O O . HOH D 4 . ? 22.938 -23.719 18.170 1.00 24.72 ? 15 HOH A O 1 HETATM 107 O O . HOH D 4 . ? 33.166 -25.375 21.769 1.00 10.73 ? 16 HOH A O 1 HETATM 108 O O . HOH D 4 . ? 26.953 -10.205 24.874 1.00 28.00 ? 17 HOH A O 1 HETATM 109 O O . HOH D 4 . ? 28.719 -6.751 22.663 1.00 31.74 ? 18 HOH A O 1 HETATM 110 O O . HOH D 4 . ? 33.605 -30.344 17.263 1.00 30.99 ? 19 HOH A O 1 HETATM 111 O O . HOH D 4 . ? 24.431 -10.243 25.366 1.00 30.08 ? 20 HOH A O 1 HETATM 112 O O . HOH D 4 . ? 22.626 -8.202 24.722 1.00 33.59 ? 21 HOH A O 1 HETATM 113 O O . HOH D 4 . ? 29.702 -31.811 15.825 1.00 28.90 ? 22 HOH A O 1 HETATM 114 O O . HOH D 4 . ? 33.673 -24.045 24.118 1.00 24.64 ? 23 HOH A O 1 HETATM 115 O O . HOH D 4 . ? 33.483 -21.420 24.367 1.00 35.41 ? 24 HOH A O 1 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 1 1 VAL VAL A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 VAL 4 4 4 VAL VAL A . n A 1 5 4BF 5 5 5 4BF 4BF A . n A 1 6 ORN 6 6 6 ORN ORN A . n A 1 7 HAO 7 7 7 HAO HAO A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 ORN 10 10 10 ORN ORN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 11 1 GOL GOL A . C 3 ACY 1 12 1 ACY ACY A . D 4 HOH 1 13 13 HOH HOH A . D 4 HOH 2 14 14 HOH HOH A . D 4 HOH 3 15 1 HOH HOH A . D 4 HOH 4 16 2 HOH HOH A . D 4 HOH 5 17 5 HOH HOH A . D 4 HOH 6 18 6 HOH HOH A . D 4 HOH 7 19 7 HOH HOH A . D 4 HOH 8 20 8 HOH HOH A . D 4 HOH 9 21 9 HOH HOH A . D 4 HOH 10 22 10 HOH HOH A . D 4 HOH 11 23 11 HOH HOH A . D 4 HOH 12 24 12 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A 4BF 5 A 4BF 5 ? TYR 4-BROMO-L-PHENYLALANINE 2 A ORN 6 A ORN 6 ? ALA L-ORNITHINE 3 A ORN 10 A ORN 10 ? ALA L-ORNITHINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3470 ? 1 MORE -30 ? 1 'SSA (A^2)' 3400 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_635 y+3/2,x-3/2,-z+1/2 0.0000000000 1.0000000000 0.0000000000 49.3005000000 1.0000000000 0.0000000000 0.0000000000 -49.3005000000 0.0000000000 0.0000000000 -1.0000000000 27.7065000000 3 'crystal symmetry operation' 10_745 -x+2,-y-1,z -1.0000000000 0.0000000000 0.0000000000 65.7340000000 0.0000000000 -1.0000000000 0.0000000000 -32.8670000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 16_555 -y+1/2,-x+1/2,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 16.4335000000 -1.0000000000 0.0000000000 0.0000000000 16.4335000000 0.0000000000 0.0000000000 -1.0000000000 27.7065000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 13 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-06-08 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 2 0 2023-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Atomic model' 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Database references' 6 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' atom_site 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' pdbx_validate_main_chain_plane 6 3 'Structure model' pdbx_validate_polymer_linkage 7 3 'Structure model' pdbx_validate_rmsd_angle 8 3 'Structure model' struct_conn 9 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_atom_site.auth_atom_id' 2 3 'Structure model' '_atom_site.label_atom_id' 3 3 'Structure model' '_database_2.pdbx_DOI' 4 3 'Structure model' '_database_2.pdbx_database_accession' 5 3 'Structure model' '_struct_conn.pdbx_dist_value' 6 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 8 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 9 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 10 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 11 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 12 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 13 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 14 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 15 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 16 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 17 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 18 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 19 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 28.8908 _pdbx_refine_tls.origin_y -19.4552 _pdbx_refine_tls.origin_z 18.8211 _pdbx_refine_tls.T[1][1] 0.0219 _pdbx_refine_tls.T[2][2] 0.0098 _pdbx_refine_tls.T[3][3] 0.0535 _pdbx_refine_tls.T[1][2] -0.0104 _pdbx_refine_tls.T[1][3] 0.0142 _pdbx_refine_tls.T[2][3] 0.0107 _pdbx_refine_tls.L[1][1] 0.2897 _pdbx_refine_tls.L[2][2] -0.0291 _pdbx_refine_tls.L[3][3] 1.2383 _pdbx_refine_tls.L[1][2] 0.8297 _pdbx_refine_tls.L[1][3] 0.4296 _pdbx_refine_tls.L[2][3] 1.0281 _pdbx_refine_tls.S[1][1] 0.0357 _pdbx_refine_tls.S[2][2] -0.0636 _pdbx_refine_tls.S[3][3] 0.0279 _pdbx_refine_tls.S[1][2] -0.0206 _pdbx_refine_tls.S[1][3] -0.0252 _pdbx_refine_tls.S[2][3] -0.0989 _pdbx_refine_tls.S[2][1] 0.0214 _pdbx_refine_tls.S[3][1] 0.0326 _pdbx_refine_tls.S[3][2] 0.0065 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 1 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 9 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 REFMAC 5.5.0109 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 3 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 CrystalClear . ? ? ? ? 'data collection' ? ? ? 5 DENZO . ? ? ? ? 'data reduction' ? ? ? 6 SHELXE . ? ? ? ? 'model building' ? ? ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 N _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 VAL _pdbx_validate_close_contact.auth_seq_id_1 1 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 ORN _pdbx_validate_close_contact.auth_seq_id_2 10 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.10 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 HAO _pdbx_validate_rmsd_angle.auth_seq_id_1 7 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 C _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 HAO _pdbx_validate_rmsd_angle.auth_seq_id_2 7 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 LYS _pdbx_validate_rmsd_angle.auth_seq_id_3 8 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 149.56 _pdbx_validate_rmsd_angle.angle_target_value 117.20 _pdbx_validate_rmsd_angle.angle_deviation 32.36 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.20 _pdbx_validate_rmsd_angle.linker_flag Y # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id HAO _pdbx_validate_main_chain_plane.auth_asym_id A _pdbx_validate_main_chain_plane.auth_seq_id 7 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle -23.32 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 4BF CD1 C Y N 1 4BF CE1 C Y N 2 4BF CZ C Y N 3 4BF BR BR N N 4 4BF CE2 C Y N 5 4BF CD2 C Y N 6 4BF CG C Y N 7 4BF CB C N N 8 4BF CA C N S 9 4BF N N N N 10 4BF C C N N 11 4BF OXT O N N 12 4BF O O N N 13 4BF HD1 H N N 14 4BF HE1 H N N 15 4BF HE2 H N N 16 4BF HD2 H N N 17 4BF HB3 H N N 18 4BF HB2 H N N 19 4BF HA H N N 20 4BF H H N N 21 4BF H2 H N N 22 4BF HXT H N N 23 ACY C C N N 24 ACY O O N N 25 ACY OXT O N N 26 ACY CH3 C N N 27 ACY HXT H N N 28 ACY H1 H N N 29 ACY H2 H N N 30 ACY H3 H N N 31 GLN N N N N 32 GLN CA C N S 33 GLN C C N N 34 GLN O O N N 35 GLN CB C N N 36 GLN CG C N N 37 GLN CD C N N 38 GLN OE1 O N N 39 GLN NE2 N N N 40 GLN OXT O N N 41 GLN H H N N 42 GLN H2 H N N 43 GLN HA H N N 44 GLN HB2 H N N 45 GLN HB3 H N N 46 GLN HG2 H N N 47 GLN HG3 H N N 48 GLN HE21 H N N 49 GLN HE22 H N N 50 GLN HXT H N N 51 GOL C1 C N N 52 GOL O1 O N N 53 GOL C2 C N N 54 GOL O2 O N N 55 GOL C3 C N N 56 GOL O3 O N N 57 GOL H11 H N N 58 GOL H12 H N N 59 GOL HO1 H N N 60 GOL H2 H N N 61 GOL HO2 H N N 62 GOL H31 H N N 63 GOL H32 H N N 64 GOL HO3 H N N 65 HAO N N N N 66 HAO N9 N N N 67 HAO C10 C N N 68 HAO O11 O N N 69 HAO CA C Y N 70 HAO C13 C Y N 71 HAO C14 C Y N 72 HAO C15 C N N 73 HAO O15 O N N 74 HAO C17 C Y N 75 HAO C18 C Y N 76 HAO C19 C Y N 77 HAO N20 N N N 78 HAO C21 C N N 79 HAO O22 O N N 80 HAO C C N N 81 HAO O O N N 82 HAO H H N N 83 HAO H13 H N N 84 HAO H15 H N N 85 HAO H15A H N N 86 HAO H15B H N N 87 HAO H17 H N N 88 HAO H18 H N N 89 HAO HN20 H N N 90 HAO OXT O N N 91 HAO H2 H N N 92 HAO H10 H N N 93 HAO HXT H N N 94 HOH O O N N 95 HOH H1 H N N 96 HOH H2 H N N 97 ILE N N N N 98 ILE CA C N S 99 ILE C C N N 100 ILE O O N N 101 ILE CB C N S 102 ILE CG1 C N N 103 ILE CG2 C N N 104 ILE CD1 C N N 105 ILE OXT O N N 106 ILE H H N N 107 ILE H2 H N N 108 ILE HA H N N 109 ILE HB H N N 110 ILE HG12 H N N 111 ILE HG13 H N N 112 ILE HG21 H N N 113 ILE HG22 H N N 114 ILE HG23 H N N 115 ILE HD11 H N N 116 ILE HD12 H N N 117 ILE HD13 H N N 118 ILE HXT H N N 119 LEU N N N N 120 LEU CA C N S 121 LEU C C N N 122 LEU O O N N 123 LEU CB C N N 124 LEU CG C N N 125 LEU CD1 C N N 126 LEU CD2 C N N 127 LEU OXT O N N 128 LEU H H N N 129 LEU H2 H N N 130 LEU HA H N N 131 LEU HB2 H N N 132 LEU HB3 H N N 133 LEU HG H N N 134 LEU HD11 H N N 135 LEU HD12 H N N 136 LEU HD13 H N N 137 LEU HD21 H N N 138 LEU HD22 H N N 139 LEU HD23 H N N 140 LEU HXT H N N 141 LYS N N N N 142 LYS CA C N S 143 LYS C C N N 144 LYS O O N N 145 LYS CB C N N 146 LYS CG C N N 147 LYS CD C N N 148 LYS CE C N N 149 LYS NZ N N N 150 LYS OXT O N N 151 LYS H H N N 152 LYS H2 H N N 153 LYS HA H N N 154 LYS HB2 H N N 155 LYS HB3 H N N 156 LYS HG2 H N N 157 LYS HG3 H N N 158 LYS HD2 H N N 159 LYS HD3 H N N 160 LYS HE2 H N N 161 LYS HE3 H N N 162 LYS HZ1 H N N 163 LYS HZ2 H N N 164 LYS HZ3 H N N 165 LYS HXT H N N 166 ORN N N N N 167 ORN CA C N S 168 ORN CB C N N 169 ORN CG C N N 170 ORN CD C N N 171 ORN NE N N N 172 ORN C C N N 173 ORN O O N N 174 ORN OXT O N N 175 ORN H H N N 176 ORN H2 H N N 177 ORN HA H N N 178 ORN HB2 H N N 179 ORN HB3 H N N 180 ORN HG2 H N N 181 ORN HG3 H N N 182 ORN HD2 H N N 183 ORN HD3 H N N 184 ORN HE1 H N N 185 ORN HE2 H N N 186 ORN HXT H N N 187 VAL N N N N 188 VAL CA C N S 189 VAL C C N N 190 VAL O O N N 191 VAL CB C N N 192 VAL CG1 C N N 193 VAL CG2 C N N 194 VAL OXT O N N 195 VAL H H N N 196 VAL H2 H N N 197 VAL HA H N N 198 VAL HB H N N 199 VAL HG11 H N N 200 VAL HG12 H N N 201 VAL HG13 H N N 202 VAL HG21 H N N 203 VAL HG22 H N N 204 VAL HG23 H N N 205 VAL HXT H N N 206 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4BF CD1 CE1 doub Y N 1 4BF CD1 CG sing Y N 2 4BF CD1 HD1 sing N N 3 4BF CE1 CZ sing Y N 4 4BF CE1 HE1 sing N N 5 4BF CZ BR sing N N 6 4BF CZ CE2 doub Y N 7 4BF CE2 CD2 sing Y N 8 4BF CE2 HE2 sing N N 9 4BF CD2 CG doub Y N 10 4BF CD2 HD2 sing N N 11 4BF CG CB sing N N 12 4BF CB CA sing N N 13 4BF CB HB3 sing N N 14 4BF CB HB2 sing N N 15 4BF CA N sing N N 16 4BF CA C sing N N 17 4BF CA HA sing N N 18 4BF N H sing N N 19 4BF N H2 sing N N 20 4BF C OXT sing N N 21 4BF C O doub N N 22 4BF OXT HXT sing N N 23 ACY C O doub N N 24 ACY C OXT sing N N 25 ACY C CH3 sing N N 26 ACY OXT HXT sing N N 27 ACY CH3 H1 sing N N 28 ACY CH3 H2 sing N N 29 ACY CH3 H3 sing N N 30 GLN N CA sing N N 31 GLN N H sing N N 32 GLN N H2 sing N N 33 GLN CA C sing N N 34 GLN CA CB sing N N 35 GLN CA HA sing N N 36 GLN C O doub N N 37 GLN C OXT sing N N 38 GLN CB CG sing N N 39 GLN CB HB2 sing N N 40 GLN CB HB3 sing N N 41 GLN CG CD sing N N 42 GLN CG HG2 sing N N 43 GLN CG HG3 sing N N 44 GLN CD OE1 doub N N 45 GLN CD NE2 sing N N 46 GLN NE2 HE21 sing N N 47 GLN NE2 HE22 sing N N 48 GLN OXT HXT sing N N 49 GOL C1 O1 sing N N 50 GOL C1 C2 sing N N 51 GOL C1 H11 sing N N 52 GOL C1 H12 sing N N 53 GOL O1 HO1 sing N N 54 GOL C2 O2 sing N N 55 GOL C2 C3 sing N N 56 GOL C2 H2 sing N N 57 GOL O2 HO2 sing N N 58 GOL C3 O3 sing N N 59 GOL C3 H31 sing N N 60 GOL C3 H32 sing N N 61 GOL O3 HO3 sing N N 62 HAO N N9 sing N N 63 HAO N H sing N N 64 HAO C10 N9 sing N N 65 HAO C10 CA sing N N 66 HAO O11 C10 doub N N 67 HAO CA C14 sing Y N 68 HAO C13 CA doub Y N 69 HAO C13 C19 sing Y N 70 HAO C13 H13 sing N N 71 HAO C14 C17 doub Y N 72 HAO C14 O15 sing N N 73 HAO C15 H15 sing N N 74 HAO C15 H15A sing N N 75 HAO C15 H15B sing N N 76 HAO O15 C15 sing N N 77 HAO C17 H17 sing N N 78 HAO C18 C17 sing Y N 79 HAO C18 H18 sing N N 80 HAO C19 C18 doub Y N 81 HAO N20 C19 sing N N 82 HAO N20 HN20 sing N N 83 HAO C21 N20 sing N N 84 HAO C21 O22 doub N N 85 HAO C C21 sing N N 86 HAO C OXT sing N N 87 HAO O C doub N N 88 HAO N H2 sing N N 89 HAO N9 H10 sing N N 90 HAO OXT HXT sing N N 91 HOH O H1 sing N N 92 HOH O H2 sing N N 93 ILE N CA sing N N 94 ILE N H sing N N 95 ILE N H2 sing N N 96 ILE CA C sing N N 97 ILE CA CB sing N N 98 ILE CA HA sing N N 99 ILE C O doub N N 100 ILE C OXT sing N N 101 ILE CB CG1 sing N N 102 ILE CB CG2 sing N N 103 ILE CB HB sing N N 104 ILE CG1 CD1 sing N N 105 ILE CG1 HG12 sing N N 106 ILE CG1 HG13 sing N N 107 ILE CG2 HG21 sing N N 108 ILE CG2 HG22 sing N N 109 ILE CG2 HG23 sing N N 110 ILE CD1 HD11 sing N N 111 ILE CD1 HD12 sing N N 112 ILE CD1 HD13 sing N N 113 ILE OXT HXT sing N N 114 LEU N CA sing N N 115 LEU N H sing N N 116 LEU N H2 sing N N 117 LEU CA C sing N N 118 LEU CA CB sing N N 119 LEU CA HA sing N N 120 LEU C O doub N N 121 LEU C OXT sing N N 122 LEU CB CG sing N N 123 LEU CB HB2 sing N N 124 LEU CB HB3 sing N N 125 LEU CG CD1 sing N N 126 LEU CG CD2 sing N N 127 LEU CG HG sing N N 128 LEU CD1 HD11 sing N N 129 LEU CD1 HD12 sing N N 130 LEU CD1 HD13 sing N N 131 LEU CD2 HD21 sing N N 132 LEU CD2 HD22 sing N N 133 LEU CD2 HD23 sing N N 134 LEU OXT HXT sing N N 135 LYS N CA sing N N 136 LYS N H sing N N 137 LYS N H2 sing N N 138 LYS CA C sing N N 139 LYS CA CB sing N N 140 LYS CA HA sing N N 141 LYS C O doub N N 142 LYS C OXT sing N N 143 LYS CB CG sing N N 144 LYS CB HB2 sing N N 145 LYS CB HB3 sing N N 146 LYS CG CD sing N N 147 LYS CG HG2 sing N N 148 LYS CG HG3 sing N N 149 LYS CD CE sing N N 150 LYS CD HD2 sing N N 151 LYS CD HD3 sing N N 152 LYS CE NZ sing N N 153 LYS CE HE2 sing N N 154 LYS CE HE3 sing N N 155 LYS NZ HZ1 sing N N 156 LYS NZ HZ2 sing N N 157 LYS NZ HZ3 sing N N 158 LYS OXT HXT sing N N 159 ORN N CA sing N N 160 ORN N H sing N N 161 ORN N H2 sing N N 162 ORN CA CB sing N N 163 ORN CA C sing N N 164 ORN CA HA sing N N 165 ORN CB CG sing N N 166 ORN CB HB2 sing N N 167 ORN CB HB3 sing N N 168 ORN CG CD sing N N 169 ORN CG HG2 sing N N 170 ORN CG HG3 sing N N 171 ORN CD NE sing N N 172 ORN CD HD2 sing N N 173 ORN CD HD3 sing N N 174 ORN NE HE1 sing N N 175 ORN NE HE2 sing N N 176 ORN C O doub N N 177 ORN C OXT sing N N 178 ORN OXT HXT sing N N 179 VAL N CA sing N N 180 VAL N H sing N N 181 VAL N H2 sing N N 182 VAL CA C sing N N 183 VAL CA CB sing N N 184 VAL CA HA sing N N 185 VAL C O doub N N 186 VAL C OXT sing N N 187 VAL CB CG1 sing N N 188 VAL CB CG2 sing N N 189 VAL CB HB sing N N 190 VAL CG1 HG11 sing N N 191 VAL CG1 HG12 sing N N 192 VAL CG1 HG13 sing N N 193 VAL CG2 HG21 sing N N 194 VAL CG2 HG22 sing N N 195 VAL CG2 HG23 sing N N 196 VAL OXT HXT sing N N 197 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 'ACETIC ACID' ACY 4 water HOH #