HEADER PROTEIN FIBRIL 07-JAN-11 3Q9G TITLE VQIVY SEGMENT FROM ALZHEIMER'S TAU DISPLAYED ON 42-MEMBERED MACROCYCLE TITLE 2 SCAFFOLD COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC PSEUDO-PEPTIDE VQIV(4BF)(ORN)(HAO)KL(ORN); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: VQIVY SEGMENT FROM ALZHEIMER'S TAU DISPLAYED ON 42- COMPND 6 MEMBERED MACROCYCLE SCAFFOLD SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS BETA SHEET TETRAMER, BETA STRAND, PROTEIN FIBRIL EXPDTA X-RAY DIFFRACTION AUTHOR C.LIU,M.R.SAWAYA,D.EISENBERG,J.S.NOWICK,P.CHENG,J.ZHENG REVDAT 2 15-NOV-23 3Q9G 1 REMARK LINK ATOM REVDAT 1 08-JUN-11 3Q9G 0 JRNL AUTH C.LIU,M.R.SAWAYA,P.N.CHENG,J.ZHENG,J.S.NOWICK,D.EISENBERG JRNL TITL CHARACTERISTICS OF AMYLOID-RELATED OLIGOMERS REVEALED BY JRNL TITL 2 CRYSTAL STRUCTURES OF MACROCYCLIC BETA-SHEET MIMICS. JRNL REF J.AM.CHEM.SOC. V. 133 6736 2011 JRNL REFN ISSN 0002-7863 JRNL PMID 21473620 JRNL DOI 10.1021/JA200222N REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 1068 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.700 REMARK 3 FREE R VALUE TEST SET COUNT : 61 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 71 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 3 REMARK 3 BIN FREE R VALUE : 0.4430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 93 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 12 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.22000 REMARK 3 B22 (A**2) : 0.22000 REMARK 3 B33 (A**2) : -0.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.144 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.691 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 103 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 122 ; 1.309 ; 2.375 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 5 ; 7.215 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 2 ;32.760 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 13 ;17.645 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 13 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 49 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 40 ; 0.692 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 55 ; 1.130 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 63 ; 2.745 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 67 ; 3.524 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 9 REMARK 3 ORIGIN FOR THE GROUP (A): 28.8908 -19.4552 18.8211 REMARK 3 T TENSOR REMARK 3 T11: 0.0219 T22: 0.0098 REMARK 3 T33: 0.0535 T12: -0.0104 REMARK 3 T13: 0.0142 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 0.2897 L22: -0.0291 REMARK 3 L33: 1.2383 L12: 0.8297 REMARK 3 L13: 0.4296 L23: 1.0281 REMARK 3 S TENSOR REMARK 3 S11: 0.0357 S12: -0.0206 S13: -0.0252 REMARK 3 S21: 0.0214 S22: -0.0636 S23: -0.0989 REMARK 3 S31: 0.0326 S32: 0.0065 S33: 0.0279 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3Q9G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000063361. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-D REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 1819 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 80.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.10400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA/K PHOSPHATE PH 6.2, 35% (V/V) (+/-) REMARK 280 -2-METHYL-2,4-PENTANEDIOL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 16.43350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 16.43350 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.70650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 16.43350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 13.85325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 16.43350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.55975 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 16.43350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 41.55975 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 16.43350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 13.85325 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 16.43350 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 16.43350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 27.70650 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 16.43350 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 16.43350 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 27.70650 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 16.43350 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 41.55975 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 16.43350 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 13.85325 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 16.43350 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 13.85325 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 16.43350 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 41.55975 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 16.43350 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 16.43350 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 27.70650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 49.30050 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -49.30050 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 27.70650 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 65.73400 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 -32.86700 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 16.43350 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 16.43350 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 27.70650 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 13 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N VAL A 1 O ORN A 10 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HAO A 7 CA - C - N ANGL. DEV. = 32.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 HAO A 7 -23.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 12 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3Q9H RELATED DB: PDB REMARK 900 RELATED ID: 3Q9I RELATED DB: PDB REMARK 900 RELATED ID: 3Q9J RELATED DB: PDB DBREF 3Q9G A 1 10 PDB 3Q9G 3Q9G 1 10 SEQRES 1 A 10 VAL GLN ILE VAL 4BF ORN HAO LYS LEU ORN MODRES 3Q9G 4BF A 5 TYR 4-BROMO-L-PHENYLALANINE MODRES 3Q9G ORN A 6 ALA L-ORNITHINE MODRES 3Q9G ORN A 10 ALA L-ORNITHINE HET 4BF A 5 12 HET ORN A 6 8 HET HAO A 7 17 HET ORN A 10 8 HET GOL A 11 6 HET ACY A 12 4 HETNAM 4BF 4-BROMO-L-PHENYLALANINE HETNAM ORN L-ORNITHINE HETNAM HAO {[3-(HYDRAZINOCARBONYL)-4-METHOXYPHENYL]AMINO}(OXO) HETNAM 2 HAO ACETIC ACID HETNAM GOL GLYCEROL HETNAM ACY ACETIC ACID HETSYN 4BF P-BROMO-L-PHENYLALANINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 4BF C9 H10 BR N O2 FORMUL 1 ORN 2(C5 H12 N2 O2) FORMUL 1 HAO C10 H11 N3 O5 FORMUL 2 GOL C3 H8 O3 FORMUL 3 ACY C2 H4 O2 FORMUL 4 HOH *12(H2 O) LINK N VAL A 1 C ORN A 10 1555 1555 1.27 LINK C VAL A 4 N 4BF A 5 1555 1555 1.32 LINK C 4BF A 5 NE ORN A 6 1555 1555 1.27 LINK C ORN A 6 N HAO A 7 1555 1555 1.35 LINK C HAO A 7 N LYS A 8 1555 1555 1.25 LINK C LEU A 9 NE ORN A 10 1555 1555 1.28 SITE 1 AC1 4 GLN A 2 VAL A 4 HAO A 7 LEU A 9 SITE 1 AC2 3 LYS A 8 ORN A 10 HOH A 15 CRYST1 32.867 32.867 55.413 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030426 0.000000 0.000000 0.00000 SCALE2 0.000000 0.030426 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018046 0.00000 ATOM 1 N VAL A 1 31.272 -26.544 17.721 1.00 14.51 N ATOM 2 CA VAL A 1 32.085 -25.446 18.322 1.00 13.41 C ATOM 3 C VAL A 1 31.192 -24.295 18.800 1.00 12.93 C ATOM 4 O VAL A 1 30.244 -23.901 18.097 1.00 12.10 O ATOM 5 CB VAL A 1 33.152 -24.898 17.328 1.00 13.14 C ATOM 6 CG1 VAL A 1 34.225 -25.946 17.049 1.00 13.03 C ATOM 7 CG2 VAL A 1 32.491 -24.408 16.025 1.00 14.16 C ATOM 8 N GLN A 2 31.496 -23.773 19.996 1.00 12.19 N ATOM 9 CA GLN A 2 30.872 -22.552 20.495 1.00 12.15 C ATOM 10 C GLN A 2 31.243 -21.347 19.634 1.00 12.45 C ATOM 11 O GLN A 2 32.404 -21.179 19.256 1.00 12.58 O ATOM 12 CB GLN A 2 31.248 -22.301 21.956 1.00 12.26 C ATOM 13 CG GLN A 2 30.565 -21.072 22.592 1.00 14.16 C ATOM 14 CD GLN A 2 28.993 -21.186 22.659 1.00 19.54 C ATOM 15 OE1 GLN A 2 28.444 -22.220 23.091 1.00 18.93 O ATOM 16 NE2 GLN A 2 28.280 -20.084 22.257 1.00 15.57 N ATOM 17 N ILE A 3 30.232 -20.547 19.280 1.00 12.10 N ATOM 18 CA ILE A 3 30.414 -19.318 18.491 1.00 12.79 C ATOM 19 C ILE A 3 29.982 -18.105 19.321 1.00 12.00 C ATOM 20 O ILE A 3 28.870 -18.067 19.864 1.00 11.84 O ATOM 21 CB ILE A 3 29.566 -19.329 17.170 1.00 12.93 C ATOM 22 CG1 ILE A 3 29.879 -20.562 16.305 1.00 13.25 C ATOM 23 CG2 ILE A 3 29.779 -18.027 16.367 1.00 13.87 C ATOM 24 CD1 ILE A 3 31.147 -20.468 15.562 1.00 14.08 C ATOM 25 N VAL A 4 30.885 -17.138 19.446 1.00 12.18 N ATOM 26 CA VAL A 4 30.547 -15.829 19.972 1.00 11.11 C ATOM 27 C VAL A 4 30.986 -14.829 18.958 1.00 11.72 C ATOM 28 O VAL A 4 32.068 -14.942 18.400 1.00 12.12 O ATOM 29 CB VAL A 4 31.253 -15.533 21.324 1.00 11.07 C ATOM 30 CG1 VAL A 4 30.923 -14.080 21.813 1.00 10.47 C ATOM 31 CG2 VAL A 4 30.857 -16.574 22.391 1.00 9.60 C HETATM 32 CD1 4BF A 5 31.293 -12.494 14.543 1.00 13.96 C HETATM 33 CE1 4BF A 5 31.684 -11.618 13.548 1.00 12.83 C HETATM 34 CZ 4BF A 5 30.931 -10.500 13.286 1.00 17.59 C HETATM 35 BR 4BF A 5 31.585 -9.353 11.917 1.00 27.64 BR HETATM 36 CE2 4BF A 5 29.812 -10.219 14.019 1.00 13.80 C HETATM 37 CD2 4BF A 5 29.430 -11.070 15.025 1.00 15.08 C HETATM 38 CG 4BF A 5 30.157 -12.239 15.290 1.00 12.90 C HETATM 39 CB 4BF A 5 29.750 -13.157 16.400 1.00 11.58 C HETATM 40 CA 4BF A 5 30.437 -12.852 17.723 1.00 11.71 C HETATM 41 N 4BF A 5 30.127 -13.864 18.682 1.00 11.84 N HETATM 42 C 4BF A 5 29.973 -11.518 18.241 1.00 11.71 C HETATM 43 O 4BF A 5 28.793 -11.190 18.122 1.00 12.25 O HETATM 44 N ORN A 6 27.070 -9.270 21.864 1.00 10.65 N HETATM 45 CA ORN A 6 27.536 -10.251 20.938 1.00 8.68 C HETATM 46 CB ORN A 6 28.890 -10.763 21.431 1.00 9.44 C HETATM 47 CG ORN A 6 30.015 -9.724 21.221 1.00 10.05 C HETATM 48 CD ORN A 6 30.331 -9.465 19.732 1.00 10.34 C HETATM 49 NE ORN A 6 30.580 -10.726 19.023 1.00 11.24 N HETATM 50 C ORN A 6 26.527 -11.366 20.883 1.00 7.55 C HETATM 51 O ORN A 6 25.713 -11.497 21.777 0.50 2.00 O HETATM 52 N HAO A 7 26.482 -12.033 19.707 1.00 8.96 N HETATM 53 N9 HAO A 7 25.809 -13.085 19.559 1.00 11.38 N HETATM 54 C10 HAO A 7 26.357 -14.319 19.494 1.00 10.02 C HETATM 55 O11 HAO A 7 27.565 -14.519 19.590 1.00 9.55 O HETATM 56 CA HAO A 7 25.477 -15.525 19.238 1.00 10.76 C HETATM 57 C13 HAO A 7 26.068 -16.784 19.364 1.00 10.34 C HETATM 58 C14 HAO A 7 24.117 -15.423 18.871 1.00 10.17 C HETATM 59 C15 HAO A 7 22.148 -14.117 18.202 1.00 10.17 C HETATM 60 O15 HAO A 7 23.498 -14.199 18.722 1.00 11.86 O HETATM 61 C17 HAO A 7 23.375 -16.583 18.625 1.00 10.84 C HETATM 62 C18 HAO A 7 23.979 -17.841 18.765 1.00 12.06 C HETATM 63 C19 HAO A 7 25.324 -17.940 19.148 1.00 9.32 C HETATM 64 N20 HAO A 7 25.975 -19.172 19.267 1.00 9.22 N HETATM 65 C21 HAO A 7 25.380 -20.387 19.203 1.00 12.12 C HETATM 66 O22 HAO A 7 24.173 -20.598 19.061 1.00 9.46 O HETATM 67 C HAO A 7 26.302 -21.517 19.350 1.00 11.88 C HETATM 68 O HAO A 7 27.491 -21.297 19.314 1.00 13.21 O ATOM 69 N LYS A 8 25.916 -22.662 19.039 1.00 12.46 N ATOM 70 CA LYS A 8 26.810 -23.810 18.910 1.00 13.52 C ATOM 71 C LYS A 8 26.673 -24.408 17.527 1.00 12.89 C ATOM 72 O LYS A 8 25.591 -24.856 17.149 1.00 13.54 O ATOM 73 CB LYS A 8 26.472 -24.843 19.970 1.00 14.38 C ATOM 74 CG LYS A 8 27.423 -26.006 20.012 1.00 19.37 C ATOM 75 CD LYS A 8 27.550 -26.539 21.401 1.00 27.68 C ATOM 76 CE LYS A 8 28.905 -26.229 21.965 1.00 32.17 C ATOM 77 NZ LYS A 8 28.951 -26.583 23.416 1.00 36.90 N ATOM 78 N LEU A 9 27.767 -24.397 16.761 1.00 12.71 N ATOM 79 CA LEU A 9 27.753 -24.865 15.353 1.00 12.66 C ATOM 80 C LEU A 9 28.241 -26.316 15.249 1.00 12.72 C ATOM 81 O LEU A 9 29.454 -26.580 15.303 1.00 11.84 O ATOM 82 CB LEU A 9 28.616 -23.946 14.455 1.00 12.47 C ATOM 83 CG LEU A 9 28.876 -24.393 12.993 1.00 12.32 C ATOM 84 CD1 LEU A 9 27.573 -24.490 12.218 1.00 12.44 C ATOM 85 CD2 LEU A 9 29.862 -23.448 12.289 1.00 10.18 C HETATM 86 N ORN A 10 30.588 -30.048 17.953 1.00 18.00 N HETATM 87 CA ORN A 10 30.125 -28.721 17.577 1.00 17.65 C HETATM 88 CB ORN A 10 28.666 -28.540 17.964 1.00 13.94 C HETATM 89 CG ORN A 10 27.716 -29.192 16.953 1.00 12.81 C HETATM 90 CD ORN A 10 27.960 -28.745 15.523 1.00 13.05 C HETATM 91 NE ORN A 10 27.519 -27.364 15.361 1.00 12.93 N HETATM 92 C ORN A 10 30.977 -27.661 18.255 1.00 17.33 C HETATM 93 O ORN A 10 31.686 -27.962 19.210 1.00 22.51 O TER 94 ORN A 10 HETATM 95 C1 GOL A 11 28.248 -18.681 26.423 1.00 38.50 C HETATM 96 O1 GOL A 11 29.039 -19.319 25.445 1.00 39.86 O HETATM 97 C2 GOL A 11 27.896 -17.267 25.980 1.00 38.97 C HETATM 98 O2 GOL A 11 29.054 -16.615 25.499 1.00 38.61 O HETATM 99 C3 GOL A 11 27.443 -16.488 27.179 1.00 39.19 C HETATM 100 O3 GOL A 11 28.582 -16.328 28.000 1.00 41.36 O HETATM 101 C ACY A 12 27.504 -24.601 26.895 1.00 62.60 C HETATM 102 O ACY A 12 26.770 -24.901 25.928 1.00 62.66 O HETATM 103 OXT ACY A 12 28.717 -24.298 26.774 1.00 63.05 O HETATM 104 CH3 ACY A 12 26.906 -24.619 28.274 1.00 61.80 C HETATM 105 O HOH A 13 24.684 -8.067 20.634 0.50 10.54 O HETATM 106 O HOH A 14 35.297 -27.094 20.479 1.00 38.92 O HETATM 107 O HOH A 15 22.938 -23.719 18.170 1.00 24.72 O HETATM 108 O HOH A 16 33.166 -25.375 21.769 1.00 10.73 O HETATM 109 O HOH A 17 26.953 -10.205 24.874 1.00 28.00 O HETATM 110 O HOH A 18 28.719 -6.751 22.663 1.00 31.74 O HETATM 111 O HOH A 19 33.605 -30.344 17.263 1.00 30.99 O HETATM 112 O HOH A 20 24.431 -10.243 25.366 1.00 30.08 O HETATM 113 O HOH A 21 22.626 -8.202 24.722 1.00 33.59 O HETATM 114 O HOH A 22 29.702 -31.811 15.825 1.00 28.90 O HETATM 115 O HOH A 23 33.673 -24.045 24.118 1.00 24.64 O HETATM 116 O HOH A 24 33.483 -21.420 24.367 1.00 35.41 O CONECT 1 92 CONECT 27 41 CONECT 32 33 38 CONECT 33 32 34 CONECT 34 33 35 36 CONECT 35 34 CONECT 36 34 37 CONECT 37 36 38 CONECT 38 32 37 39 CONECT 39 38 40 CONECT 40 39 41 42 CONECT 41 27 40 CONECT 42 40 43 49 CONECT 43 42 CONECT 44 45 CONECT 45 44 46 50 CONECT 46 45 47 CONECT 47 46 48 CONECT 48 47 49 CONECT 49 42 48 CONECT 50 45 51 52 CONECT 51 50 CONECT 52 50 53 CONECT 53 52 54 CONECT 54 53 55 56 CONECT 55 54 CONECT 56 54 57 58 CONECT 57 56 63 CONECT 58 56 60 61 CONECT 59 60 CONECT 60 58 59 CONECT 61 58 62 CONECT 62 61 63 CONECT 63 57 62 64 CONECT 64 63 65 CONECT 65 64 66 67 CONECT 66 65 CONECT 67 65 68 69 CONECT 68 67 CONECT 69 67 CONECT 80 91 CONECT 86 87 CONECT 87 86 88 92 CONECT 88 87 89 CONECT 89 88 90 CONECT 90 89 91 CONECT 91 80 90 CONECT 92 1 87 93 CONECT 93 92 CONECT 95 96 97 CONECT 96 95 CONECT 97 95 98 99 CONECT 98 97 CONECT 99 97 100 CONECT 100 99 CONECT 101 102 103 104 CONECT 102 101 CONECT 103 101 CONECT 104 101 MASTER 379 0 6 0 0 0 2 6 115 1 59 1 END