0.024998
0.000000
0.000000
0.000000
0.016836
0.000000
0.000000
0.000000
0.016656
0.00000
0.00000
0.00000
Spiegel, P.C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
40.003
59.395
60.038
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
US
Mol.Cell
MOCEFL
2168
1097-2765
42
250
260
10.1016/j.molcel.2011.03.010
21458342
A de novo protein binding pair by computational design and directed evolution.
2011
10.2210/pdb3qa9/pdb
pdb_00003qa9
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
x-ray
1
1.54
1.0
1.54
ROTATING ANODE
RIGAKU MICROMAX-007 HF
17398.131
CoA binding domain protein
1
man
polymer
18.015
water
85
nat
water
no
no
TRPIDGLTDEDIREILTRYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPNYEEVLGRKCYPSVLDIPDKIEVVDL
FVDPAKAWRFVVYAIKKGAKVVWFQYNTYYPLAARQAKEAGLIIVANRCMMREHERLLGEKLEHHHHHH
TRPIDGLTDEDIREILTRYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPNYEEVLGRKCYPSVLDIPDKIEVVDL
FVDPAKAWRFVVYAIKKGAKVVWFQYNTYYPLAARQAKEAGLIIVANRCMMREHERLLGEKLEHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
562
Escherichia coli
562
Escherichia coli
1
2.05
39.99
VAPOR DIFFUSION, HANGING DROP
4.5
10 mg/mL, 0.1 M Na-acetate, 3.0 M NaCl, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Version format compliance
Database references
Data collection
Database references
1
0
2011-04-20
1
1
2011-07-13
1
2
2011-07-20
1
3
2024-02-21
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
RCSB
Y
RCSB
2011-01-10
REL
REL
HOH
water
WAT
1001
2
HOH
HOH
1001
A
WAT
1002
2
HOH
HOH
1002
A
WAT
1003
2
HOH
HOH
1003
A
WAT
1004
2
HOH
HOH
1004
A
WAT
1005
2
HOH
HOH
1005
A
WAT
1006
2
HOH
HOH
1006
A
WAT
1007
2
HOH
HOH
1007
A
WAT
1008
2
HOH
HOH
1008
A
WAT
1009
2
HOH
HOH
1009
A
WAT
1010
2
HOH
HOH
1010
A
WAT
1011
2
HOH
HOH
1011
A
WAT
1012
2
HOH
HOH
1012
A
WAT
1013
2
HOH
HOH
1013
A
WAT
1014
2
HOH
HOH
1014
A
WAT
1015
2
HOH
HOH
1015
A
WAT
1016
2
HOH
HOH
1016
A
WAT
1017
2
HOH
HOH
1017
A
WAT
1018
2
HOH
HOH
1018
A
WAT
1019
2
HOH
HOH
1019
A
WAT
1020
2
HOH
HOH
1020
A
WAT
1021
2
HOH
HOH
1021
A
WAT
1022
2
HOH
HOH
1022
A
WAT
1023
2
HOH
HOH
1023
A
WAT
1024
2
HOH
HOH
1024
A
WAT
1025
2
HOH
HOH
1025
A
WAT
1026
2
HOH
HOH
1026
A
WAT
1028
2
HOH
HOH
1028
A
WAT
1029
2
HOH
HOH
1029
A
WAT
1031
2
HOH
HOH
1031
A
WAT
1032
2
HOH
HOH
1032
A
WAT
1033
2
HOH
HOH
1033
A
WAT
1034
2
HOH
HOH
1034
A
WAT
1035
2
HOH
HOH
1035
A
WAT
1037
2
HOH
HOH
1037
A
WAT
1039
2
HOH
HOH
1039
A
WAT
1040
2
HOH
HOH
1040
A
WAT
1041
2
HOH
HOH
1041
A
WAT
1042
2
HOH
HOH
1042
A
WAT
1045
2
HOH
HOH
1045
A
WAT
1046
2
HOH
HOH
1046
A
WAT
1047
2
HOH
HOH
1047
A
WAT
1048
2
HOH
HOH
1048
A
WAT
1049
2
HOH
HOH
1049
A
WAT
1050
2
HOH
HOH
1050
A
WAT
1051
2
HOH
HOH
1051
A
WAT
1052
2
HOH
HOH
1052
A
WAT
1053
2
HOH
HOH
1053
A
WAT
1054
2
HOH
HOH
1054
A
WAT
1056
2
HOH
HOH
1056
A
WAT
1057
2
HOH
HOH
1057
A
WAT
1058
2
HOH
HOH
1058
A
WAT
1059
2
HOH
HOH
1059
A
WAT
1062
2
HOH
HOH
1062
A
WAT
1063
2
HOH
HOH
1063
A
WAT
1065
2
HOH
HOH
1065
A
WAT
1067
2
HOH
HOH
1067
A
WAT
1068
2
HOH
HOH
1068
A
WAT
1069
2
HOH
HOH
1069
A
WAT
1070
2
HOH
HOH
1070
A
WAT
1072
2
HOH
HOH
1072
A
WAT
1073
2
HOH
HOH
1073
A
WAT
1074
2
HOH
HOH
1074
A
WAT
1076
2
HOH
HOH
1076
A
WAT
1077
2
HOH
HOH
1077
A
WAT
1078
2
HOH
HOH
1078
A
WAT
1080
2
HOH
HOH
1080
A
WAT
1081
2
HOH
HOH
1081
A
WAT
1086
2
HOH
HOH
1086
A
WAT
1090
2
HOH
HOH
1090
A
WAT
1091
2
HOH
HOH
1091
A
WAT
1092
2
HOH
HOH
1092
A
WAT
1093
2
HOH
HOH
1093
A
WAT
1094
2
HOH
HOH
1094
A
WAT
1095
2
HOH
HOH
1095
A
WAT
1096
2
HOH
HOH
1096
A
WAT
1097
2
HOH
HOH
1097
A
WAT
1098
2
HOH
HOH
1098
A
WAT
1099
2
HOH
HOH
1099
A
WAT
1100
2
HOH
HOH
1100
A
WAT
1101
2
HOH
HOH
1101
A
WAT
1102
2
HOH
HOH
1102
A
WAT
1103
2
HOH
HOH
1103
A
WAT
1104
2
HOH
HOH
1104
A
WAT
1105
2
HOH
HOH
1105
A
WAT
1106
2
HOH
HOH
1106
A
n
1
1
A
n
2
2
A
PRO
3
n
3
PRO
3
A
ILE
4
n
4
ILE
4
A
ASP
5
n
5
ASP
5
A
GLY
6
n
6
GLY
6
A
LEU
7
n
7
LEU
7
A
THR
8
n
8
THR
8
A
ASP
9
n
9
ASP
9
A
GLU
10
n
10
GLU
10
A
ASP
11
n
11
ASP
11
A
ILE
12
n
12
ILE
12
A
ARG
13
n
13
ARG
13
A
GLU
14
n
14
GLU
14
A
ILE
15
n
15
ILE
15
A
LEU
16
n
16
LEU
16
A
THR
17
n
17
THR
17
A
ARG
18
n
18
ARG
18
A
TYR
19
n
19
TYR
19
A
LYS
20
n
20
LYS
20
A
LYS
21
n
21
LYS
21
A
ILE
22
n
22
ILE
22
A
ALA
23
n
23
ALA
23
A
LEU
24
n
24
LEU
24
A
VAL
25
n
25
VAL
25
A
GLY
26
n
26
GLY
26
A
ALA
27
n
27
ALA
27
A
SER
28
n
28
SER
28
A
PRO
29
n
29
PRO
29
A
LYS
30
n
30
LYS
30
A
PRO
31
n
31
PRO
31
A
GLU
32
n
32
GLU
32
A
ARG
33
n
33
ARG
33
A
ASP
34
n
34
ASP
34
A
ALA
35
n
35
ALA
35
A
ASN
36
n
36
ASN
36
A
ILE
37
n
37
ILE
37
A
VAL
38
n
38
VAL
38
A
MET
39
n
39
MET
39
A
LYS
40
n
40
LYS
40
A
TYR
41
n
41
TYR
41
A
LEU
42
n
42
LEU
42
A
LEU
43
n
43
LEU
43
A
GLU
44
n
44
GLU
44
A
HIS
45
n
45
HIS
45
A
GLY
46
n
46
GLY
46
A
TYR
47
n
47
TYR
47
A
ASP
48
n
48
ASP
48
A
VAL
49
n
49
VAL
49
A
TYR
50
n
50
TYR
50
A
PRO
51
n
51
PRO
51
A
VAL
52
n
52
VAL
52
A
ASN
53
n
53
ASN
53
A
PRO
54
n
54
PRO
54
A
ASN
55
n
55
ASN
55
A
TYR
56
n
56
TYR
56
A
GLU
57
n
57
GLU
57
A
GLU
58
n
58
GLU
58
A
VAL
59
n
59
VAL
59
A
LEU
60
n
60
LEU
60
A
GLY
61
n
61
GLY
61
A
ARG
62
n
62
ARG
62
A
LYS
63
n
63
LYS
63
A
CYS
64
n
64
CYS
64
A
TYR
65
n
65
TYR
65
A
PRO
66
n
66
PRO
66
A
SER
67
n
67
SER
67
A
VAL
68
n
68
VAL
68
A
LEU
69
n
69
LEU
69
A
ASP
70
n
70
ASP
70
A
ILE
71
n
71
ILE
71
A
PRO
72
n
72
PRO
72
A
ASP
73
n
73
ASP
73
A
LYS
74
n
74
LYS
74
A
ILE
75
n
75
ILE
75
A
GLU
76
n
76
GLU
76
A
VAL
77
n
77
VAL
77
A
VAL
78
n
78
VAL
78
A
ASP
79
n
79
ASP
79
A
LEU
80
n
80
LEU
80
A
PHE
81
n
81
PHE
81
A
VAL
82
n
82
VAL
82
A
ASP
83
n
83
ASP
83
A
PRO
84
n
84
PRO
84
A
ALA
85
n
85
ALA
85
A
LYS
86
n
86
LYS
86
A
ALA
87
n
87
ALA
87
A
TRP
88
n
88
TRP
88
A
ARG
89
n
89
ARG
89
A
PHE
90
n
90
PHE
90
A
VAL
91
n
91
VAL
91
A
VAL
92
n
92
VAL
92
A
TYR
93
n
93
TYR
93
A
ALA
94
n
94
ALA
94
A
ILE
95
n
95
ILE
95
A
LYS
96
n
96
LYS
96
A
LYS
97
n
97
LYS
97
A
GLY
98
n
98
GLY
98
A
ALA
99
n
99
ALA
99
A
LYS
100
n
100
LYS
100
A
VAL
101
n
101
VAL
101
A
VAL
102
n
102
VAL
102
A
TRP
103
n
103
TRP
103
A
PHE
104
n
104
PHE
104
A
GLN
105
n
105
GLN
105
A
TYR
106
n
106
TYR
106
A
ASN
107
n
107
ASN
107
A
THR
108
n
108
THR
108
A
TYR
109
n
109
TYR
109
A
TYR
110
n
110
TYR
110
A
PRO
111
n
111
PRO
111
A
LEU
112
n
112
LEU
112
A
ALA
113
n
113
ALA
113
A
ALA
114
n
114
ALA
114
A
ARG
115
n
115
ARG
115
A
GLN
116
n
116
GLN
116
A
ALA
117
n
117
ALA
117
A
LYS
118
n
118
LYS
118
A
GLU
119
n
119
GLU
119
A
ALA
120
n
120
ALA
120
A
GLY
121
n
121
GLY
121
A
LEU
122
n
122
LEU
122
A
ILE
123
n
123
ILE
123
A
ILE
124
n
124
ILE
124
A
VAL
125
n
125
VAL
125
A
ALA
126
n
126
ALA
126
A
ASN
127
n
127
ASN
127
A
ARG
128
n
128
ARG
128
A
CYS
129
n
129
CYS
129
A
MET
130
n
130
MET
130
A
MET
131
n
131
MET
131
A
ARG
132
n
132
ARG
132
A
GLU
133
n
133
GLU
133
A
HIS
134
n
134
HIS
134
A
GLU
135
n
135
GLU
135
A
ARG
136
n
136
ARG
136
A
LEU
137
n
137
LEU
137
A
LEU
138
n
138
LEU
138
A
GLY
139
n
139
GLY
139
A
GLU
140
n
140
GLU
140
A
ALA
141
n
141
LYS
141
A
LEU
142
n
142
LEU
142
A
GLU
143
n
143
GLU
143
A
HIS
144
n
144
HIS
144
A
n
145
145
A
n
146
146
A
n
147
147
A
n
148
148
A
n
149
149
A
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
TYR
50
A
O
TYR
50
A
N
ILE
22
A
N
ILE
22
A
N
ALA
23
A
N
ALA
23
A
O
VAL
77
A
O
VAL
77
A
N
LEU
80
A
N
LEU
80
A
O
TRP
103
A
O
TRP
103
A
N
PHE
104
A
N
PHE
104
A
O
VAL
125
A
O
VAL
125
1
A
CG
LYS
141
A
CG
LYS
141
1
Y
1
A
CD
LYS
141
A
CD
LYS
141
1
Y
1
A
CE
LYS
141
A
CE
LYS
141
1
Y
1
A
NZ
LYS
141
A
NZ
LYS
141
1
Y
1
A
THR
1
A
THR
1
1
Y
1
A
ARG
2
A
ARG
2
1
Y
1
A
HIS
145
A
HIS
145
1
Y
1
A
HIS
146
A
HIS
146
1
Y
1
A
HIS
147
A
HIS
147
1
Y
1
A
HIS
148
A
HIS
148
1
Y
1
A
HIS
149
A
HIS
149
1
Y
1
A
A
NZ
O
LYS
HOH
40
1100
2.16
1
6.97
1.10
114.20
121.17
A
A
A
CA
CB
SG
CYS
CYS
CYS
64
64
64
N
0.2417
0.2132
1.90
60
1189
11771
11519
RANDOM
1
0
MOLECULAR REPLACEMENT
Engh & Huber
1.90
60
85
1239
0
0
1154
1.9
60
3QA9
11771
11519
0
0
1
97.9
0.124
1.90
1.97
8.1
1
96.3
data collection
CrystalClear
phasing
PHASER
refinement
CNS
1.1
data reduction
d*TREK
data scaling
d*TREK
Crystal Structure of Prb (PH1109 protein redesigned for binding)
1
N
N
2
N
N
A
THR
8
A
THR
8
HELX_P
A
TYR
19
A
TYR
19
1
1
12
A
ARG
33
A
ARG
33
HELX_P
A
GLU
44
A
GLU
44
1
2
12
A
SER
67
A
SER
67
HELX_P
A
ILE
71
A
ILE
71
5
3
5
A
ASP
83
A
ASP
83
HELX_P
A
ALA
85
A
ALA
85
5
4
3
A
LYS
86
A
LYS
86
HELX_P
A
GLY
98
A
GLY
98
1
5
13
A
TYR
110
A
TYR
110
HELX_P
A
ALA
120
A
ALA
120
1
6
11
A
CYS
129
A
CYS
129
HELX_P
A
LEU
138
A
LEU
138
1
7
10
PROTEIN BINDING, DE NOVO PROTEIN
Prb monomer, CoA binding motif, engineered binding partner for Pdar, Pdar, PROTEIN BINDING, DE NOVO PROTEIN
3QA9
PDB
1
3QA9
1
149
3QA9
1
149
3QA9
A
1
1
149
5
parallel
parallel
parallel
parallel
A
ASP
48
A
ASP
48
A
VAL
52
A
VAL
52
A
LYS
21
A
LYS
21
A
VAL
25
A
VAL
25
A
VAL
77
A
VAL
77
A
LEU
80
A
LEU
80
A
VAL
101
A
VAL
101
A
PHE
104
A
PHE
104
A
ILE
123
A
ILE
123
A
ALA
126
A
ALA
126
19
P 21 21 21