0.011831
0.000000
0.000000
0.000000
0.011831
0.000000
0.000000
0.000000
0.006883
0.00000
0.00000
0.00000
Fleming, J.K.
Wojciak, J.M.
Campbell, M.-A.
Huxford, T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
84.523
84.523
145.276
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C6 H14 O4
150.173
TRIETHYLENE GLYCOL
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
C
N
251
N
O
N
252
N
C
N
253
N
O
N
254
N
C
N
255
N
C
N
256
N
O
N
257
N
C
N
258
N
C
N
259
N
O
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
N
N
275
S
C
N
276
N
C
N
277
N
O
N
278
N
C
Y
279
N
C
Y
280
N
C
Y
281
N
C
Y
282
N
C
Y
283
N
C
Y
284
N
C
N
285
N
O
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
N
N
298
S
C
N
299
N
C
N
300
N
O
N
301
N
C
N
302
N
C
N
303
N
C
N
304
N
O
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
N
N
315
S
C
N
316
N
C
N
317
N
O
N
318
N
C
N
319
N
O
N
320
N
O
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
S
N
329
N
O
N
330
N
O
N
331
N
O
N
332
N
O
N
333
N
N
N
334
S
C
N
335
N
C
N
336
N
O
N
337
R
C
N
338
N
O
N
339
N
C
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
N
N
351
S
C
N
352
N
C
N
353
N
O
N
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
N
Y
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
N
364
N
O
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
N
N
378
S
C
N
379
N
C
N
380
N
O
N
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
N
388
N
O
N
389
N
O
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
N
N
402
S
C
N
403
N
C
N
404
N
O
N
405
N
C
N
406
N
C
N
407
N
C
N
408
N
O
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
Y
271
N
doub
Y
272
N
sing
Y
273
N
sing
N
274
N
sing
Y
275
N
doub
N
276
N
sing
Y
277
N
doub
N
278
N
sing
Y
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
doub
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
doub
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
doub
N
314
N
doub
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
doub
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
doub
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
Y
344
N
doub
Y
345
N
sing
Y
346
N
sing
N
347
N
sing
Y
348
N
doub
Y
349
N
sing
Y
350
N
sing
N
351
N
sing
Y
352
N
sing
Y
353
N
doub
N
354
N
sing
Y
355
N
doub
N
356
N
sing
Y
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
doub
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
Y
372
N
doub
Y
373
N
sing
Y
374
N
sing
N
375
N
sing
Y
376
N
doub
N
377
N
sing
Y
378
N
doub
N
379
N
sing
Y
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
doub
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
408
462
476
10.1016/j.jmb.2011.02.061
21392506
Biochemical and structural characterization of lysophosphatidic Acid binding by a humanized monoclonal antibody.
2011
10.2210/pdb3qct/pdb
pdb_00003qct
100
1
CCD
2009-08-20
ADSC QUANTUM 315
Double crystal, Si(111)
SINGLE WAVELENGTH
M
x-ray
1
1.0000
1.0
8.2.2
ALS
1.0000
SYNCHROTRON
ALS BEAMLINE 8.2.2
24038.854
LT3015 antibody Fab fragment, heavy chain
1
man
polymer
23839.611
LT3015 antibody Fab fragment, light chain
1
man
polymer
96.063
SULFATE ION
2
syn
non-polymer
150.173
TRIETHYLENE GLYCOL
1
syn
non-polymer
18.015
water
160
nat
water
no
no
EVQLVQSGAEVKKPGESLKISCQAFGYGFINYLIEWIRQMPGQGLEWIGLINPGSDYTNYNENFKGQATLSADKSSSTAY
LQWSSLKASDTAMYFCARRFGYYGSGNYFDYWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVT
VSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK
EVQLVQSGAEVKKPGESLKISCQAFGYGFINYLIEWIRQMPGQGLEWIGLINPGSDYTNYNENFKGQATLSADKSSSTAY
LQWSSLKASDTAMYFCARRFGYYGSGNYFDYWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVT
VSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK
H
polypeptide(L)
no
no
DVVMTQTPLSLPVTPGEPASISCTSGQSLVHINGNTYLHWYLQKPGQSPKLLIYKVSNLFSGVPDRFSGSGSGTDFTLKI
SRVEAEDVGVYFCSQSTHFPFTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQ
SGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE
DVVMTQTPLSLPVTPGEPASISCTSGQSLVHINGNTYLHWYLQKPGQSPKLLIYKVSNLFSGVPDRFSGSGSGTDFTLKI
SRVEAEDVGVYFCSQSTHFPFTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQ
SGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE
L
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
1
118
DKFZp686P15220
9606
Homo sapiens
10029
Cricetulus griseus
human
sample
119
223
DKFZp686P15220
9606
Homo sapiens
10029
Cricetulus griseus
human
sample
1
113
IGKC
9606
Homo sapiens
10029
Cricetulus griseus
human
sample
114
218
IGKC
9606
Homo sapiens
10029
Cricetulus griseus
1
2.71
54.61
VAPOR DIFFUSION, HANGING DROP
7.5
0.1 M HEPES sodium pH 7.5, 2% PEG 400 (v/v), and 1.75 M ammonium sulfate, VAPOR DIFFUSION, HANGING DROP, temperature 294K
294
entity_src_gen
software
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq
struct_site
repository
Initial release
Version format compliance
Refinement description
Source and taxonomy
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2011-03-30
1
1
2011-07-13
1
2
2017-07-26
1
3
2017-11-08
1
4
2023-09-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq.db_align_end
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2011-01-17
REL
REL
SO4
SULFATE ION
PGE
TRIETHYLENE GLYCOL
HOH
water
3I9G
PDB ENTRY 3I9G
PDB
experimental model
SO4
215
3
SO4
SO4
215
H
SO4
216
3
SO4
SO4
216
H
PGE
214
4
PGE
PGE
214
L
HOH
217
5
HOH
HOH
217
H
HOH
218
5
HOH
HOH
218
H
HOH
219
5
HOH
HOH
219
H
HOH
220
5
HOH
HOH
220
H
HOH
221
5
HOH
HOH
221
H
HOH
222
5
HOH
HOH
222
H
HOH
223
5
HOH
HOH
223
H
HOH
224
5
HOH
HOH
224
H
HOH
225
5
HOH
HOH
225
H
HOH
226
5
HOH
HOH
226
H
HOH
227
5
HOH
HOH
227
H
HOH
228
5
HOH
HOH
228
H
HOH
229
5
HOH
HOH
229
H
HOH
230
5
HOH
HOH
230
H
HOH
231
5
HOH
HOH
231
H
HOH
232
5
HOH
HOH
232
H
HOH
233
5
HOH
HOH
233
H
HOH
234
5
HOH
HOH
234
H
HOH
235
5
HOH
HOH
235
H
HOH
236
5
HOH
HOH
236
H
HOH
237
5
HOH
HOH
237
H
HOH
238
5
HOH
HOH
238
H
HOH
239
5
HOH
HOH
239
H
HOH
240
5
HOH
HOH
240
H
HOH
241
5
HOH
HOH
241
H
HOH
242
5
HOH
HOH
242
H
HOH
243
5
HOH
HOH
243
H
HOH
244
5
HOH
HOH
244
H
HOH
245
5
HOH
HOH
245
H
HOH
246
5
HOH
HOH
246
H
HOH
247
5
HOH
HOH
247
H
HOH
248
5
HOH
HOH
248
H
HOH
249
5
HOH
HOH
249
H
HOH
250
5
HOH
HOH
250
H
HOH
251
5
HOH
HOH
251
H
HOH
252
5
HOH
HOH
252
H
HOH
253
5
HOH
HOH
253
H
HOH
254
5
HOH
HOH
254
H
HOH
255
5
HOH
HOH
255
H
HOH
256
5
HOH
HOH
256
H
HOH
257
5
HOH
HOH
257
H
HOH
258
5
HOH
HOH
258
H
HOH
259
5
HOH
HOH
259
H
HOH
260
5
HOH
HOH
260
H
HOH
261
5
HOH
HOH
261
H
HOH
262
5
HOH
HOH
262
H
HOH
263
5
HOH
HOH
263
H
HOH
264
5
HOH
HOH
264
H
HOH
265
5
HOH
HOH
265
H
HOH
266
5
HOH
HOH
266
H
HOH
267
5
HOH
HOH
267
H
HOH
268
5
HOH
HOH
268
H
HOH
269
5
HOH
HOH
269
H
HOH
270
5
HOH
HOH
270
H
HOH
271
5
HOH
HOH
271
H
HOH
272
5
HOH
HOH
272
H
HOH
273
5
HOH
HOH
273
H
HOH
274
5
HOH
HOH
274
H
HOH
275
5
HOH
HOH
275
H
HOH
276
5
HOH
HOH
276
H
HOH
277
5
HOH
HOH
277
H
HOH
278
5
HOH
HOH
278
H
HOH
279
5
HOH
HOH
279
H
HOH
280
5
HOH
HOH
280
H
HOH
281
5
HOH
HOH
281
H
HOH
282
5
HOH
HOH
282
H
HOH
283
5
HOH
HOH
283
H
HOH
284
5
HOH
HOH
284
H
HOH
285
5
HOH
HOH
285
H
HOH
286
5
HOH
HOH
286
H
HOH
287
5
HOH
HOH
287
H
HOH
288
5
HOH
HOH
288
H
HOH
289
5
HOH
HOH
289
H
HOH
290
5
HOH
HOH
290
H
HOH
291
5
HOH
HOH
291
H
HOH
292
5
HOH
HOH
292
H
HOH
293
5
HOH
HOH
293
H
HOH
294
5
HOH
HOH
294
H
HOH
295
5
HOH
HOH
295
H
HOH
296
5
HOH
HOH
296
H
HOH
297
5
HOH
HOH
297
H
HOH
298
5
HOH
HOH
298
H
HOH
215
5
HOH
HOH
215
L
HOH
216
5
HOH
HOH
216
L
HOH
217
5
HOH
HOH
217
L
HOH
218
5
HOH
HOH
218
L
HOH
219
5
HOH
HOH
219
L
HOH
220
5
HOH
HOH
220
L
HOH
221
5
HOH
HOH
221
L
HOH
222
5
HOH
HOH
222
L
HOH
223
5
HOH
HOH
223
L
HOH
224
5
HOH
HOH
224
L
HOH
225
5
HOH
HOH
225
L
HOH
226
5
HOH
HOH
226
L
HOH
227
5
HOH
HOH
227
L
HOH
228
5
HOH
HOH
228
L
HOH
229
5
HOH
HOH
229
L
HOH
230
5
HOH
HOH
230
L
HOH
231
5
HOH
HOH
231
L
HOH
232
5
HOH
HOH
232
L
HOH
233
5
HOH
HOH
233
L
HOH
234
5
HOH
HOH
234
L
HOH
235
5
HOH
HOH
235
L
HOH
236
5
HOH
HOH
236
L
HOH
237
5
HOH
HOH
237
L
HOH
238
5
HOH
HOH
238
L
HOH
239
5
HOH
HOH
239
L
HOH
240
5
HOH
HOH
240
L
HOH
241
5
HOH
HOH
241
L
HOH
242
5
HOH
HOH
242
L
HOH
243
5
HOH
HOH
243
L
HOH
244
5
HOH
HOH
244
L
HOH
245
5
HOH
HOH
245
L
HOH
246
5
HOH
HOH
246
L
HOH
247
5
HOH
HOH
247
L
HOH
248
5
HOH
HOH
248
L
HOH
249
5
HOH
HOH
249
L
HOH
250
5
HOH
HOH
250
L
HOH
251
5
HOH
HOH
251
L
HOH
252
5
HOH
HOH
252
L
HOH
253
5
HOH
HOH
253
L
HOH
254
5
HOH
HOH
254
L
HOH
255
5
HOH
HOH
255
L
HOH
256
5
HOH
HOH
256
L
HOH
257
5
HOH
HOH
257
L
HOH
258
5
HOH
HOH
258
L
HOH
259
5
HOH
HOH
259
L
HOH
260
5
HOH
HOH
260
L
HOH
261
5
HOH
HOH
261
L
HOH
262
5
HOH
HOH
262
L
HOH
263
5
HOH
HOH
263
L
HOH
264
5
HOH
HOH
264
L
HOH
265
5
HOH
HOH
265
L
HOH
266
5
HOH
HOH
266
L
HOH
267
5
HOH
HOH
267
L
HOH
268
5
HOH
HOH
268
L
HOH
269
5
HOH
HOH
269
L
HOH
270
5
HOH
HOH
270
L
HOH
271
5
HOH
HOH
271
L
HOH
272
5
HOH
HOH
272
L
HOH
273
5
HOH
HOH
273
L
HOH
274
5
HOH
HOH
274
L
HOH
275
5
HOH
HOH
275
L
HOH
276
5
HOH
HOH
276
L
HOH
277
5
HOH
HOH
277
L
HOH
278
5
HOH
HOH
278
L
HOH
279
5
HOH
HOH
279
L
HOH
280
5
HOH
HOH
280
L
HOH
281
5
HOH
HOH
281
L
HOH
282
5
HOH
HOH
282
L
HOH
283
5
HOH
HOH
283
L
HOH
284
5
HOH
HOH
284
L
HOH
285
5
HOH
HOH
285
L
HOH
286
5
HOH
HOH
286
L
HOH
287
5
HOH
HOH
287
L
HOH
288
5
HOH
HOH
288
L
HOH
289
5
HOH
HOH
289
L
HOH
290
5
HOH
HOH
290
L
HOH
291
5
HOH
HOH
291
L
HOH
292
5
HOH
HOH
292
L
51.080
2.500
2.500
11.980
11.980
Phaser MODE: MR_AUTO
GLU
1
n
1
GLU
1
H
VAL
2
n
2
VAL
2
H
GLN
3
n
3
GLN
3
H
LEU
4
n
4
LEU
4
H
VAL
5
n
5
VAL
5
H
GLN
6
n
6
GLN
6
H
SER
7
n
7
SER
7
H
GLY
8
n
8
GLY
8
H
ALA
9
n
9
ALA
9
H
GLU
10
n
10
GLU
10
H
VAL
11
n
11
VAL
11
H
LYS
12
n
12
LYS
12
H
LYS
13
n
13
LYS
13
H
PRO
14
n
14
PRO
14
H
GLY
15
n
15
GLY
15
H
GLU
16
n
16
GLU
16
H
SER
17
n
17
SER
17
H
LEU
18
n
18
LEU
18
H
LYS
19
n
19
LYS
19
H
ILE
20
n
20
ILE
20
H
SER
21
n
21
SER
21
H
CYS
22
n
22
CYS
22
H
GLN
23
n
23
GLN
23
H
ALA
24
n
24
ALA
24
H
PHE
25
n
25
PHE
25
H
GLY
26
n
26
GLY
26
H
TYR
27
n
27
TYR
27
H
GLY
28
n
28
GLY
28
H
PHE
29
n
29
PHE
29
H
ILE
30
n
30
ILE
30
H
ASN
31
n
31
ASN
31
H
TYR
32
n
32
TYR
32
H
LEU
33
n
33
LEU
33
H
ILE
34
n
34
ILE
34
H
GLU
35
n
35
GLU
35
H
TRP
36
n
36
TRP
36
H
ILE
37
n
37
ILE
37
H
ARG
38
n
38
ARG
38
H
GLN
39
n
39
GLN
39
H
MET
40
n
40
MET
40
H
PRO
41
n
41
PRO
41
H
GLY
42
n
42
GLY
42
H
GLN
43
n
43
GLN
43
H
GLY
44
n
44
GLY
44
H
LEU
45
n
45
LEU
45
H
GLU
46
n
46
GLU
46
H
TRP
47
n
47
TRP
47
H
ILE
48
n
48
ILE
48
H
GLY
49
n
49
GLY
49
H
LEU
50
n
50
LEU
50
H
ILE
51
n
51
ILE
51
H
ASN
52
n
52
ASN
52
H
PRO
52
n
53
A
PRO
52
H
GLY
53
n
54
GLY
53
H
SER
54
n
55
SER
54
H
ASP
55
n
56
ASP
55
H
TYR
56
n
57
TYR
56
H
THR
57
n
58
THR
57
H
ASN
58
n
59
ASN
58
H
TYR
59
n
60
TYR
59
H
ASN
60
n
61
ASN
60
H
GLU
61
n
62
GLU
61
H
ASN
62
n
63
ASN
62
H
PHE
63
n
64
PHE
63
H
LYS
64
n
65
LYS
64
H
GLY
65
n
66
GLY
65
H
GLN
66
n
67
GLN
66
H
ALA
67
n
68
ALA
67
H
THR
68
n
69
THR
68
H
LEU
69
n
70
LEU
69
H
SER
70
n
71
SER
70
H
ALA
71
n
72
ALA
71
H
ASP
72
n
73
ASP
72
H
LYS
73
n
74
LYS
73
H
SER
74
n
75
SER
74
H
SER
75
n
76
SER
75
H
SER
76
n
77
SER
76
H
THR
77
n
78
THR
77
H
ALA
78
n
79
ALA
78
H
TYR
79
n
80
TYR
79
H
LEU
80
n
81
LEU
80
H
GLN
81
n
82
GLN
81
H
TRP
82
n
83
TRP
82
H
SER
82
n
84
A
SER
82
H
SER
82
n
85
B
SER
82
H
LEU
82
n
86
C
LEU
82
H
LYS
83
n
87
LYS
83
H
ALA
84
n
88
ALA
84
H
SER
85
n
89
SER
85
H
ASP
86
n
90
ASP
86
H
THR
87
n
91
THR
87
H
ALA
88
n
92
ALA
88
H
MET
89
n
93
MET
89
H
TYR
90
n
94
TYR
90
H
PHE
91
n
95
PHE
91
H
CYS
92
n
96
CYS
92
H
ALA
93
n
97
ALA
93
H
ARG
94
n
98
ARG
94
H
ARG
95
n
99
ARG
95
H
PHE
96
n
100
PHE
96
H
GLY
97
n
101
GLY
97
H
TYR
98
n
102
TYR
98
H
TYR
99
n
103
TYR
99
H
GLY
100
n
104
GLY
100
H
SER
100
n
105
A
SER
100
H
GLY
100
n
106
B
GLY
100
H
ASN
100
n
107
C
ASN
100
H
TYR
100
n
108
D
TYR
100
H
PHE
100
n
109
E
PHE
100
H
ASP
101
n
110
ASP
101
H
TYR
102
n
111
TYR
102
H
TRP
103
n
112
TRP
103
H
GLY
104
n
113
GLY
104
H
GLN
105
n
114
GLN
105
H
GLY
106
n
115
GLY
106
H
THR
107
n
116
THR
107
H
MET
108
n
117
MET
108
H
VAL
109
n
118
VAL
109
H
THR
110
n
119
THR
110
H
VAL
111
n
120
VAL
111
H
SER
112
n
121
SER
112
H
SER
113
n
122
SER
113
H
ALA
114
n
123
ALA
114
H
SER
115
n
124
SER
115
H
THR
116
n
125
THR
116
H
LYS
117
n
126
LYS
117
H
GLY
118
n
127
GLY
118
H
PRO
119
n
128
PRO
119
H
SER
120
n
129
SER
120
H
VAL
121
n
130
VAL
121
H
PHE
122
n
131
PHE
122
H
PRO
123
n
132
PRO
123
H
LEU
124
n
133
LEU
124
H
ALA
125
n
134
ALA
125
H
PRO
126
n
135
PRO
126
H
SER
127
n
136
SER
127
H
SER
128
n
137
SER
128
H
n
138
129
H
n
139
130
H
n
140
131
H
n
141
132
H
GLY
133
n
142
GLY
133
H
GLY
134
n
143
GLY
134
H
THR
135
n
144
THR
135
H
ALA
136
n
145
ALA
136
H
ALA
137
n
146
ALA
137
H
LEU
138
n
147
LEU
138
H
GLY
139
n
148
GLY
139
H
CYS
140
n
149
CYS
140
H
LEU
141
n
150
LEU
141
H
VAL
142
n
151
VAL
142
H
LYS
143
n
152
LYS
143
H
ASP
144
n
153
ASP
144
H
TYR
145
n
154
TYR
145
H
PHE
146
n
155
PHE
146
H
PRO
147
n
156
PRO
147
H
GLU
148
n
157
GLU
148
H
PRO
149
n
158
PRO
149
H
VAL
150
n
159
VAL
150
H
THR
151
n
160
THR
151
H
VAL
152
n
161
VAL
152
H
SER
153
n
162
SER
153
H
TRP
154
n
163
TRP
154
H
ASN
155
n
164
ASN
155
H
SER
156
n
165
SER
156
H
GLY
157
n
166
GLY
157
H
ALA
158
n
167
ALA
158
H
LEU
159
n
168
LEU
159
H
THR
160
n
169
THR
160
H
SER
161
n
170
SER
161
H
GLY
162
n
171
GLY
162
H
VAL
163
n
172
VAL
163
H
HIS
164
n
173
HIS
164
H
THR
165
n
174
THR
165
H
PHE
166
n
175
PHE
166
H
PRO
167
n
176
PRO
167
H
ALA
168
n
177
ALA
168
H
VAL
169
n
178
VAL
169
H
LEU
170
n
179
LEU
170
H
GLN
171
n
180
GLN
171
H
SER
172
n
181
SER
172
H
SER
173
n
182
SER
173
H
GLY
174
n
183
GLY
174
H
LEU
175
n
184
LEU
175
H
TYR
176
n
185
TYR
176
H
SER
177
n
186
SER
177
H
LEU
178
n
187
LEU
178
H
SER
179
n
188
SER
179
H
SER
180
n
189
SER
180
H
VAL
181
n
190
VAL
181
H
VAL
182
n
191
VAL
182
H
THR
183
n
192
THR
183
H
VAL
184
n
193
VAL
184
H
PRO
185
n
194
PRO
185
H
SER
186
n
195
SER
186
H
SER
187
n
196
SER
187
H
SER
188
n
197
SER
188
H
LEU
189
n
198
LEU
189
H
GLY
190
n
199
GLY
190
H
THR
191
n
200
THR
191
H
GLN
192
n
201
GLN
192
H
THR
193
n
202
THR
193
H
TYR
194
n
203
TYR
194
H
ILE
195
n
204
ILE
195
H
CYS
196
n
205
CYS
196
H
ASN
197
n
206
ASN
197
H
VAL
198
n
207
VAL
198
H
ASN
199
n
208
ASN
199
H
HIS
200
n
209
HIS
200
H
LYS
201
n
210
LYS
201
H
PRO
202
n
211
PRO
202
H
SER
203
n
212
SER
203
H
ASN
204
n
213
ASN
204
H
THR
205
n
214
THR
205
H
LYS
206
n
215
LYS
206
H
VAL
207
n
216
VAL
207
H
ASP
208
n
217
ASP
208
H
LYS
209
n
218
LYS
209
H
ARG
210
n
219
ARG
210
H
VAL
211
n
220
VAL
211
H
GLU
212
n
221
GLU
212
H
PRO
213
n
222
PRO
213
H
LYS
214
n
223
LYS
214
H
ASP
1
n
1
ASP
1
L
VAL
2
n
2
VAL
2
L
VAL
3
n
3
VAL
3
L
MET
4
n
4
MET
4
L
THR
5
n
5
THR
5
L
GLN
6
n
6
GLN
6
L
THR
7
n
7
THR
7
L
PRO
8
n
8
PRO
8
L
LEU
9
n
9
LEU
9
L
SER
10
n
10
SER
10
L
LEU
11
n
11
LEU
11
L
PRO
12
n
12
PRO
12
L
VAL
13
n
13
VAL
13
L
THR
14
n
14
THR
14
L
PRO
15
n
15
PRO
15
L
GLY
16
n
16
GLY
16
L
GLU
17
n
17
GLU
17
L
PRO
18
n
18
PRO
18
L
ALA
19
n
19
ALA
19
L
SER
20
n
20
SER
20
L
ILE
21
n
21
ILE
21
L
SER
22
n
22
SER
22
L
CYS
23
n
23
CYS
23
L
THR
24
n
24
THR
24
L
SER
25
n
25
SER
25
L
GLY
26
n
26
GLY
26
L
GLN
27
n
27
GLN
27
L
SER
27
n
28
A
SER
27
L
LEU
27
n
29
B
LEU
27
L
VAL
27
n
30
C
VAL
27
L
HIS
27
n
31
D
HIS
27
L
ILE
27
n
32
E
ILE
27
L
ASN
28
n
33
ASN
28
L
GLY
29
n
34
GLY
29
L
ASN
30
n
35
ASN
30
L
THR
31
n
36
THR
31
L
TYR
32
n
37
TYR
32
L
LEU
33
n
38
LEU
33
L
HIS
34
n
39
HIS
34
L
TRP
35
n
40
TRP
35
L
TYR
36
n
41
TYR
36
L
LEU
37
n
42
LEU
37
L
GLN
38
n
43
GLN
38
L
LYS
39
n
44
LYS
39
L
PRO
40
n
45
PRO
40
L
GLY
41
n
46
GLY
41
L
GLN
42
n
47
GLN
42
L
SER
43
n
48
SER
43
L
PRO
44
n
49
PRO
44
L
LYS
45
n
50
LYS
45
L
LEU
46
n
51
LEU
46
L
LEU
47
n
52
LEU
47
L
ILE
48
n
53
ILE
48
L
TYR
49
n
54
TYR
49
L
LYS
50
n
55
LYS
50
L
VAL
51
n
56
VAL
51
L
SER
52
n
57
SER
52
L
ASN
53
n
58
ASN
53
L
LEU
54
n
59
LEU
54
L
PHE
55
n
60
PHE
55
L
SER
56
n
61
SER
56
L
GLY
57
n
62
GLY
57
L
VAL
58
n
63
VAL
58
L
PRO
59
n
64
PRO
59
L
ASP
60
n
65
ASP
60
L
ARG
61
n
66
ARG
61
L
PHE
62
n
67
PHE
62
L
SER
63
n
68
SER
63
L
GLY
64
n
69
GLY
64
L
SER
65
n
70
SER
65
L
GLY
66
n
71
GLY
66
L
SER
67
n
72
SER
67
L
GLY
68
n
73
GLY
68
L
THR
69
n
74
THR
69
L
ASP
70
n
75
ASP
70
L
PHE
71
n
76
PHE
71
L
THR
72
n
77
THR
72
L
LEU
73
n
78
LEU
73
L
LYS
74
n
79
LYS
74
L
ILE
75
n
80
ILE
75
L
SER
76
n
81
SER
76
L
ARG
77
n
82
ARG
77
L
VAL
78
n
83
VAL
78
L
GLU
79
n
84
GLU
79
L
ALA
80
n
85
ALA
80
L
GLU
81
n
86
GLU
81
L
ASP
82
n
87
ASP
82
L
VAL
83
n
88
VAL
83
L
GLY
84
n
89
GLY
84
L
VAL
85
n
90
VAL
85
L
TYR
86
n
91
TYR
86
L
PHE
87
n
92
PHE
87
L
CYS
88
n
93
CYS
88
L
SER
89
n
94
SER
89
L
GLN
90
n
95
GLN
90
L
SER
91
n
96
SER
91
L
THR
92
n
97
THR
92
L
HIS
93
n
98
HIS
93
L
PHE
94
n
99
PHE
94
L
PRO
95
n
100
PRO
95
L
PHE
96
n
101
PHE
96
L
THR
97
n
102
THR
97
L
PHE
98
n
103
PHE
98
L
GLY
99
n
104
GLY
99
L
GLN
100
n
105
GLN
100
L
GLY
101
n
106
GLY
101
L
THR
102
n
107
THR
102
L
LYS
103
n
108
LYS
103
L
LEU
104
n
109
LEU
104
L
GLU
105
n
110
GLU
105
L
ILE
106
n
111
ILE
106
L
LYS
107
n
112
LYS
107
L
ARG
108
n
113
ARG
108
L
THR
109
n
114
THR
109
L
VAL
110
n
115
VAL
110
L
ALA
111
n
116
ALA
111
L
ALA
112
n
117
ALA
112
L
PRO
113
n
118
PRO
113
L
SER
114
n
119
SER
114
L
VAL
115
n
120
VAL
115
L
PHE
116
n
121
PHE
116
L
ILE
117
n
122
ILE
117
L
PHE
118
n
123
PHE
118
L
PRO
119
n
124
PRO
119
L
PRO
120
n
125
PRO
120
L
SER
121
n
126
SER
121
L
ASP
122
n
127
ASP
122
L
GLU
123
n
128
GLU
123
L
GLN
124
n
129
GLN
124
L
LEU
125
n
130
LEU
125
L
LYS
126
n
131
LYS
126
L
SER
127
n
132
SER
127
L
GLY
128
n
133
GLY
128
L
THR
129
n
134
THR
129
L
ALA
130
n
135
ALA
130
L
SER
131
n
136
SER
131
L
VAL
132
n
137
VAL
132
L
VAL
133
n
138
VAL
133
L
CYS
134
n
139
CYS
134
L
LEU
135
n
140
LEU
135
L
LEU
136
n
141
LEU
136
L
ASN
137
n
142
ASN
137
L
ASN
138
n
143
ASN
138
L
PHE
139
n
144
PHE
139
L
TYR
140
n
145
TYR
140
L
PRO
141
n
146
PRO
141
L
ARG
142
n
147
ARG
142
L
GLU
143
n
148
GLU
143
L
ALA
144
n
149
ALA
144
L
LYS
145
n
150
LYS
145
L
VAL
146
n
151
VAL
146
L
GLN
147
n
152
GLN
147
L
TRP
148
n
153
TRP
148
L
LYS
149
n
154
LYS
149
L
VAL
150
n
155
VAL
150
L
ASP
151
n
156
ASP
151
L
ASN
152
n
157
ASN
152
L
ALA
153
n
158
ALA
153
L
LEU
154
n
159
LEU
154
L
GLN
155
n
160
GLN
155
L
SER
156
n
161
SER
156
L
GLY
157
n
162
GLY
157
L
ASN
158
n
163
ASN
158
L
SER
159
n
164
SER
159
L
GLN
160
n
165
GLN
160
L
GLU
161
n
166
GLU
161
L
SER
162
n
167
SER
162
L
VAL
163
n
168
VAL
163
L
THR
164
n
169
THR
164
L
GLU
165
n
170
GLU
165
L
GLN
166
n
171
GLN
166
L
ASP
167
n
172
ASP
167
L
SER
168
n
173
SER
168
L
LYS
169
n
174
LYS
169
L
ASP
170
n
175
ASP
170
L
SER
171
n
176
SER
171
L
THR
172
n
177
THR
172
L
TYR
173
n
178
TYR
173
L
SER
174
n
179
SER
174
L
LEU
175
n
180
LEU
175
L
SER
176
n
181
SER
176
L
SER
177
n
182
SER
177
L
THR
178
n
183
THR
178
L
LEU
179
n
184
LEU
179
L
THR
180
n
185
THR
180
L
LEU
181
n
186
LEU
181
L
SER
182
n
187
SER
182
L
LYS
183
n
188
LYS
183
L
ALA
184
n
189
ALA
184
L
ASP
185
n
190
ASP
185
L
TYR
186
n
191
TYR
186
L
GLU
187
n
192
GLU
187
L
LYS
188
n
193
LYS
188
L
HIS
189
n
194
HIS
189
L
LYS
190
n
195
LYS
190
L
VAL
191
n
196
VAL
191
L
TYR
192
n
197
TYR
192
L
ALA
193
n
198
ALA
193
L
CYS
194
n
199
CYS
194
L
GLU
195
n
200
GLU
195
L
VAL
196
n
201
VAL
196
L
THR
197
n
202
THR
197
L
HIS
198
n
203
HIS
198
L
GLN
199
n
204
GLN
199
L
GLY
200
n
205
GLY
200
L
LEU
201
n
206
LEU
201
L
SER
202
n
207
SER
202
L
SER
203
n
208
SER
203
L
PRO
204
n
209
PRO
204
L
VAL
205
n
210
VAL
205
L
THR
206
n
211
THR
206
L
LYS
207
n
212
LYS
207
L
SER
208
n
213
SER
208
L
PHE
209
n
214
PHE
209
L
ASN
210
n
215
ASN
210
L
ARG
211
n
216
ARG
211
L
GLY
212
n
217
GLY
212
L
GLU
213
n
218
GLU
213
L
author_and_software_defined_assembly
PISA
2
dimeric
4190
-56
20120
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
H
N
VAL
5
A
N
VAL
5
H
O
GLN
23
A
O
GLN
23
H
N
CYS
22
A
N
CYS
22
H
O
ALA
78
A
O
ALA
79
H
O
THR
77
A
O
THR
78
H
N
ASP
72
A
N
ASP
73
H
N
LYS
12
A
N
LYS
12
H
O
THR
110
A
O
THR
119
H
O
THR
107
A
O
THR
116
H
N
TYR
90
A
N
TYR
94
H
O
PHE
91
A
O
PHE
95
H
N
ILE
37
A
N
ILE
37
H
N
ARG
38
A
N
ARG
38
H
O
GLU
46
A
O
GLU
46
H
N
LEU
50
A
N
LEU
50
H
O
ASN
58
A
O
ASN
59
H
N
LYS
12
A
N
LYS
12
H
O
THR
110
A
O
THR
119
H
O
THR
107
A
O
THR
116
H
N
TYR
90
A
N
TYR
94
H
N
ARG
94
A
N
ARG
98
H
O
TYR
102
A
O
TYR
111
H
N
PHE
122
A
N
PHE
131
H
O
LEU
141
A
O
LEU
150
H
N
ALA
136
A
N
ALA
145
H
O
VAL
184
A
O
VAL
193
H
O
VAL
181
A
O
VAL
190
H
N
HIS
164
A
N
HIS
173
H
N
PHE
122
A
N
PHE
131
H
O
LEU
141
A
O
LEU
150
H
N
ALA
136
A
N
ALA
145
H
O
VAL
184
A
O
VAL
193
H
O
SER
177
A
O
SER
186
H
N
VAL
169
A
N
VAL
178
H
N
THR
151
A
N
THR
160
H
O
ASN
199
A
O
ASN
208
H
N
VAL
198
A
N
VAL
207
H
O
VAL
207
A
O
VAL
216
L
N
THR
5
B
N
THR
5
L
O
THR
24
B
O
THR
24
L
N
CYS
23
B
N
CYS
23
L
O
PHE
71
B
O
PHE
76
L
O
LYS
74
B
O
LYS
79
L
N
SER
63
B
N
SER
68
L
N
LEU
11
B
N
LEU
11
L
O
LYS
103
B
O
LYS
108
L
O
LEU
104
B
O
LEU
109
L
N
GLY
84
B
N
GLY
89
L
O
SER
89
B
O
SER
94
L
N
HIS
34
B
N
HIS
39
L
N
TRP
35
B
N
TRP
40
L
O
LEU
47
B
O
LEU
52
L
N
TYR
49
B
N
TYR
54
L
O
ASN
53
B
O
ASN
58
L
N
LEU
11
B
N
LEU
11
L
O
LYS
103
B
O
LYS
108
L
O
LEU
104
B
O
LEU
109
L
N
GLY
84
B
N
GLY
89
L
N
GLN
90
B
N
GLN
95
L
O
THR
97
B
O
THR
102
L
N
PHE
116
B
N
PHE
121
L
O
LEU
135
B
O
LEU
140
L
N
ALA
130
B
N
ALA
135
L
O
LEU
181
B
O
LEU
186
L
O
THR
178
B
O
THR
183
L
N
GLN
160
B
N
GLN
165
L
O
ALA
153
B
O
ALA
158
L
N
VAL
150
B
N
VAL
155
L
N
GLN
147
B
N
GLN
152
L
O
GLU
195
B
O
GLU
200
L
N
CYS
194
B
N
CYS
199
L
O
LYS
207
B
O
LYS
212
1
H
LYS
129
A
LYS
138
1
Y
1
H
SER
130
A
SER
139
1
Y
1
H
THR
131
A
THR
140
1
Y
1
H
SER
132
A
SER
141
1
Y
1
L
L
OE1
OE1
GLU
GLU
79
81
2.06
1
H
H
O
O
ASN
HOH
31
247
2.16
1
H
H
GLY
TYR
26
27
118.80
1
-10.87
1.60
122.70
111.83
H
H
H
O
C
N
GLY
GLY
GLN
104
104
105
Y
1
H
H
C
N
GLY
GLN
104
105
0.246
0.023
1.336
1.582
Y
1
H
TYR
27
69.55
-162.26
1
H
GLN
43
-118.73
-162.45
B
1
H
SER
82
37.24
58.05
1
H
ASP
101
-150.37
57.66
1
L
VAL
51
76.38
-52.79
6.1765
0.0000
-0.0000
6.1765
0.0000
-8.8141
0.2872
0.2377
0.2402
2.1493
46.152
1345
29417
26305
5.11
89.42
1.000
1.000
0.29
1
0.20
MOLECULAR REPLACEMENT
30.26
0.90
1.11
PDB ENTRY 3I9G
MLHL
FLAT BULK SOLVENT MODEL
31.755
0.340
2.1493
46.152
160
3523
20
0
3343
0.012
3448
1.328
4679
19.321
1207
0.076
516
0.006
597
0.3774
0.2901
2.2262
121
2182
80.00
0.3371
0.2902
2.3153
137
2196
81.00
0.3399
0.2728
2.4207
123
2242
82.00
0.3528
0.2847
2.5483
107
2310
83.00
0.3135
0.2878
2.7079
125
2423
88.00
0.3653
0.2811
2.9170
133
2479
89.00
0.3137
0.2575
3.2104
136
2616
94.00
0.2933
0.2380
3.6748
176
2695
97.00
0.2301
0.1957
4.6292
161
2786
98.00
0.2505
0.2132
46.1629
126
3031
100.00
2.149
50.000
3QCT
29461
0
-3
0.065
1
12.200
11.200
100.000
0.645
2.1490
2.230
10.100
100.000
0.581
2.230
2.320
11.200
100.000
0.461
2.320
2.420
11.600
100.000
0.351
2.420
2.550
11.600
100.000
0.236
2.550
2.710
11.500
100.000
0.157
2.710
2.920
11.400
99.900
0.096
2.920
3.210
11.200
100.000
0.060
3.210
3.680
10.900
100.000
0.036
3.680
4.630
11.100
100.000
0.027
4.630
50.000
11.800
99.900
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
Thu Nov 13 10:53:32 2008
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
2.1.4
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.5_2
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
data collection
HKL-2000
data reduction
HKL-2000
data scaling
HKL-2000
Crystal structure of the humanized apo LT3015 anti-lysophosphatidic acid antibody Fab fragment
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
5
N
N
5
N
N
H
GLY
28
A
GLY
28
HELX_P
H
TYR
32
A
TYR
32
5
1
5
H
GLU
61
A
GLU
62
HELX_P
H
LYS
64
A
LYS
65
5
2
4
H
LYS
83
A
LYS
87
HELX_P
H
THR
87
A
THR
91
5
3
5
H
SER
156
A
SER
165
HELX_P
H
ALA
158
A
ALA
167
5
4
3
H
SER
187
A
SER
196
HELX_P
H
LEU
189
A
LEU
198
5
5
3
H
LYS
201
A
LYS
210
HELX_P
H
ASN
204
A
ASN
213
5
6
4
L
GLU
79
B
GLU
84
HELX_P
L
VAL
83
B
VAL
88
5
7
5
L
SER
121
B
SER
126
HELX_P
L
LYS
126
B
LYS
131
1
8
6
L
LYS
183
B
LYS
188
HELX_P
L
GLU
187
B
GLU
192
1
9
5
disulf
2.041
H
CYS
22
A
SG
CYS
22
1_555
H
CYS
92
A
SG
CYS
96
1_555
disulf
2.041
H
CYS
140
A
SG
CYS
149
1_555
H
CYS
196
A
SG
CYS
205
1_555
disulf
2.086
L
CYS
23
B
SG
CYS
23
1_555
L
CYS
88
B
SG
CYS
93
1_555
disulf
2.026
L
CYS
134
B
SG
CYS
139
1_555
L
CYS
194
B
SG
CYS
199
1_555
IMMUNE SYSTEM
antibody, lysophosphatidic acid binding, IMMUNE SYSTEM
H
PHE
146
A
PHE
155
1
H
PRO
147
A
PRO
156
-4.06
H
GLU
148
A
GLU
157
1
H
PRO
149
A
PRO
158
6.77
L
THR
7
B
THR
7
1
L
PRO
8
B
PRO
8
-5.46
L
PHE
94
B
PHE
99
1
L
PRO
95
B
PRO
100
-2.98
L
TYR
140
B
TYR
145
1
L
PRO
141
B
PRO
146
-7.24
3QCT
PDB
1
1
3QCT
EVQLVQSGAEVKKPGESLKISCQAFGYGFINYLIEWIRQMPGQGLEWIGLINPGSDYTNYNENFKGQATLSADKSSSTAY
LQWSSLKASDTAMYFCARRFGYYGSGNYFDYWGQGTMV
Q6N089_HUMAN
UNP
1
139
Q6N089
TVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL
GTQTYICNVNHKPSNTKVDKRVEPK
3QCT
PDB
2
1
3QCT
DVVMTQTPLSLPVTPGEPASISCTSGQSLVHINGNTYLHWYLQKPGQSPKLLIYKVSNLFSGVPDRFSGSGSGTDFTLKI
SRVEAEDVGVYFCSQSTHFPFTFGQGTKLEIKR
IGKC_HUMAN
UNP
2
1
P01834
TVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEK
HKVYACEVTHQGLSSPVTKSFNRGE
1
109
3QCT
1
109
3QCT
H
1
1
118
139
243
3QCT
110
214
Q6N089
H
2
119
223
1
108
3QCT
1
108
3QCT
L
3
1
113
1
105
3QCT
109
213
P01834
L
4
114
218
4
6
4
4
4
3
4
6
4
4
4
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
H
LEU
4
A
LEU
4
H
GLN
6
A
GLN
6
H
LEU
18
A
LEU
18
H
ALA
24
A
ALA
24
H
THR
77
A
THR
78
H
TRP
82
A
TRP
83
H
ALA
67
A
ALA
68
H
ASP
72
A
ASP
73
H
GLU
10
A
GLU
10
H
LYS
12
A
LYS
12
H
THR
107
A
THR
116
H
VAL
111
A
VAL
120
H
ALA
88
A
ALA
92
H
PHE
96
A
PHE
100
H
ILE
34
A
ILE
34
H
GLN
39
A
GLN
39
H
LEU
45
A
LEU
45
H
ASN
52
A
ASN
52
H
TYR
56
A
TYR
57
H
TYR
59
A
TYR
60
H
GLU
10
A
GLU
10
H
LYS
12
A
LYS
12
H
THR
107
A
THR
116
H
VAL
111
A
VAL
120
H
ALA
88
A
ALA
92
H
PHE
96
A
PHE
100
H
TYR
100
A
TYR
108
H
TRP
103
A
TRP
112
D
H
SER
120
A
SER
129
H
LEU
124
A
LEU
133
H
THR
135
A
THR
144
H
TYR
145
A
TYR
154
H
TYR
176
A
TYR
185
H
PRO
185
A
PRO
194
H
VAL
163
A
VAL
172
H
THR
165
A
THR
174
H
SER
120
A
SER
129
H
LEU
124
A
LEU
133
H
THR
135
A
THR
144
H
TYR
145
A
TYR
154
H
TYR
176
A
TYR
185
H
PRO
185
A
PRO
194
H
VAL
169
A
VAL
178
H
LEU
170
A
LEU
179
H
THR
151
A
THR
160
H
TRP
154
A
TRP
163
H
TYR
194
A
TYR
203
H
HIS
200
A
HIS
209
H
THR
205
A
THR
214
H
VAL
211
A
VAL
220
L
MET
4
B
MET
4
L
THR
7
B
THR
7
L
ALA
19
B
ALA
19
L
SER
25
B
SER
25
L
ASP
70
B
ASP
75
L
ILE
75
B
ILE
80
L
PHE
62
B
PHE
67
L
SER
67
B
SER
72
L
SER
10
B
SER
10
L
VAL
13
B
VAL
13
L
THR
102
B
THR
107
L
ILE
106
B
ILE
111
L
GLY
84
B
GLY
89
L
GLN
90
B
GLN
95
L
LEU
33
B
LEU
38
L
GLN
38
B
GLN
43
L
LYS
45
B
LYS
50
L
TYR
49
B
TYR
54
L
ASN
53
B
ASN
58
L
LEU
54
B
LEU
59
L
SER
10
B
SER
10
L
VAL
13
B
VAL
13
L
THR
102
B
THR
107
L
ILE
106
B
ILE
111
L
GLY
84
B
GLY
89
L
GLN
90
B
GLN
95
L
THR
97
B
THR
102
L
PHE
98
B
PHE
103
L
SER
114
B
SER
119
L
PHE
118
B
PHE
123
L
THR
129
B
THR
134
L
PHE
139
B
PHE
144
L
TYR
173
B
TYR
178
L
SER
182
B
SER
187
L
SER
159
B
SER
164
L
VAL
163
B
VAL
168
L
ALA
153
B
ALA
158
L
LEU
154
B
LEU
159
L
LYS
145
B
LYS
150
L
VAL
150
B
VAL
155
L
VAL
191
B
VAL
196
L
THR
197
B
THR
202
L
VAL
205
B
VAL
210
L
ASN
210
B
ASN
215
BINDING SITE FOR RESIDUE SO4 H 215
H
SO4
215
Software
10
BINDING SITE FOR RESIDUE SO4 H 216
H
SO4
216
Software
5
BINDING SITE FOR RESIDUE PGE L 214
L
PGE
214
Software
4
H
TYR
99
A
TYR
103
10
1_555
H
GLY
100
A
GLY
104
10
1_555
H
SER
100
A
SER
105
A
10
1_555
H
GLY
100
A
GLY
106
B
10
1_555
H
TYR
100
A
TYR
108
D
10
1_555
H
SER
113
A
SER
122
10
6_545
H
HOH
222
F
HOH
10
1_555
L
ASN
30
B
ASN
35
10
1_555
L
TYR
32
B
TYR
37
10
1_555
L
LYS
50
B
LYS
55
10
1_555
H
ARG
94
A
ARG
98
5
1_555
H
GLY
97
A
GLY
101
5
1_555
H
TYR
98
A
TYR
102
5
1_555
H
ASN
100
A
ASN
107
C
5
1_555
H
HOH
247
F
HOH
5
1_555
H
TYR
99
A
TYR
103
4
1_555
H
SER
172
A
SER
181
4
6_545
L
THR
92
B
THR
97
4
1_555
L
PHE
94
B
PHE
99
4
1_555
96
P 43 21 2