0.008744 0.005048 0.000000 0.000000 0.010096 0.000000 0.000000 0.000000 0.012882 0.00000 0.00000 0.00000 Sandoval, C.M. Baker, S.L. Jansen, K. Metzner, S.I. Sousa, M.C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 9 90.00 90.00 120.00 114.370 114.370 77.630 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 1089-8638 409 348 357 10.1016/j.jmb.2011.03.035 21463635 Crystal structure of BamD: an essential component of the beta-Barrel assembly machinery of gram-negative bacteria. 2011 10.2210/pdb3qky/pdb pdb_00003qky 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 CCD ADSC QUANTUM 315r SINGLE WAVELENGTH M x-ray 1 1.0 1.0 8.2.1 ALS 1.0 SYNCHROTRON ALS BEAMLINE 8.2.1 30879.482 Outer membrane assembly lipoprotein YfiO Residues 24-280 1 man polymer 18.015 water 152 nat water no no GHMAAGSGRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ IYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYER RELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTR ARQRLTELEGDASLAQGQRQN GHMAAGSGRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ IYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYER RELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTR ARQRLTELEGDASLAQGQRQN A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Rhodothermus obamensis ATCC 43812/DSM 4252/R-10 sample Rmar_0679 518766 Rhodothermus marinus 3.16 61.13 citation database_2 struct_ref_seq_dif repository Initial release Version format compliance Atomic model Database references 1 0 2011-04-20 1 1 2011-07-13 1 2 2011-11-16 1 3 2023-07-26 _citation.journal_volume _citation.page_first _citation.page_last _citation.title _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details RCSB Y RCSB 2011-02-02 REL REL HOH water HOH 1 2 HOH HOH 1 A HOH 2 2 HOH HOH 2 A HOH 3 2 HOH HOH 3 A HOH 4 2 HOH HOH 4 A HOH 5 2 HOH HOH 5 A HOH 6 2 HOH HOH 6 A HOH 7 2 HOH HOH 7 A HOH 8 2 HOH HOH 8 A HOH 9 2 HOH HOH 9 A HOH 10 2 HOH HOH 10 A HOH 11 2 HOH HOH 11 A HOH 12 2 HOH HOH 12 A HOH 13 2 HOH HOH 13 A HOH 14 2 HOH HOH 14 A HOH 15 2 HOH HOH 15 A HOH 16 2 HOH HOH 16 A HOH 17 2 HOH HOH 17 A HOH 18 2 HOH HOH 18 A HOH 19 2 HOH HOH 19 A HOH 20 2 HOH HOH 281 A HOH 21 2 HOH HOH 282 A HOH 22 2 HOH HOH 283 A HOH 23 2 HOH HOH 284 A HOH 24 2 HOH HOH 285 A HOH 25 2 HOH HOH 286 A HOH 26 2 HOH HOH 287 A HOH 27 2 HOH HOH 288 A HOH 28 2 HOH HOH 289 A HOH 29 2 HOH HOH 290 A HOH 30 2 HOH HOH 291 A HOH 31 2 HOH HOH 292 A HOH 32 2 HOH HOH 293 A HOH 33 2 HOH HOH 294 A HOH 34 2 HOH HOH 295 A HOH 35 2 HOH HOH 296 A HOH 36 2 HOH HOH 297 A HOH 37 2 HOH HOH 298 A HOH 38 2 HOH HOH 299 A HOH 39 2 HOH HOH 300 A HOH 40 2 HOH HOH 301 A HOH 41 2 HOH HOH 302 A HOH 42 2 HOH HOH 303 A HOH 43 2 HOH HOH 304 A HOH 44 2 HOH HOH 305 A HOH 45 2 HOH HOH 306 A HOH 46 2 HOH HOH 307 A HOH 47 2 HOH HOH 308 A HOH 48 2 HOH HOH 309 A HOH 49 2 HOH HOH 310 A HOH 50 2 HOH HOH 311 A HOH 51 2 HOH HOH 312 A HOH 52 2 HOH HOH 313 A HOH 53 2 HOH HOH 314 A HOH 54 2 HOH HOH 315 A HOH 55 2 HOH HOH 316 A HOH 56 2 HOH HOH 317 A HOH 57 2 HOH HOH 318 A HOH 58 2 HOH HOH 319 A HOH 59 2 HOH HOH 320 A HOH 60 2 HOH HOH 321 A HOH 61 2 HOH HOH 322 A HOH 62 2 HOH HOH 323 A HOH 63 2 HOH HOH 324 A HOH 64 2 HOH HOH 325 A HOH 65 2 HOH HOH 326 A HOH 66 2 HOH HOH 327 A HOH 67 2 HOH HOH 328 A HOH 68 2 HOH HOH 329 A HOH 69 2 HOH HOH 330 A HOH 70 2 HOH HOH 331 A HOH 71 2 HOH HOH 332 A HOH 72 2 HOH HOH 333 A HOH 73 2 HOH HOH 334 A HOH 74 2 HOH HOH 335 A HOH 75 2 HOH HOH 336 A HOH 76 2 HOH HOH 337 A HOH 77 2 HOH HOH 338 A HOH 78 2 HOH HOH 339 A HOH 79 2 HOH HOH 340 A HOH 80 2 HOH HOH 341 A HOH 81 2 HOH HOH 342 A HOH 82 2 HOH HOH 343 A HOH 83 2 HOH HOH 344 A HOH 84 2 HOH HOH 345 A HOH 85 2 HOH HOH 346 A HOH 86 2 HOH HOH 347 A HOH 87 2 HOH HOH 348 A HOH 88 2 HOH HOH 349 A HOH 89 2 HOH HOH 350 A HOH 90 2 HOH HOH 351 A HOH 91 2 HOH HOH 352 A HOH 92 2 HOH HOH 353 A HOH 93 2 HOH HOH 354 A HOH 94 2 HOH HOH 355 A HOH 95 2 HOH HOH 356 A HOH 96 2 HOH HOH 357 A HOH 97 2 HOH HOH 358 A HOH 98 2 HOH HOH 359 A HOH 99 2 HOH HOH 360 A HOH 100 2 HOH HOH 361 A HOH 101 2 HOH HOH 362 A HOH 102 2 HOH HOH 363 A HOH 103 2 HOH HOH 364 A HOH 104 2 HOH HOH 365 A HOH 105 2 HOH HOH 366 A HOH 106 2 HOH HOH 367 A HOH 107 2 HOH HOH 368 A HOH 108 2 HOH HOH 369 A HOH 109 2 HOH HOH 370 A HOH 110 2 HOH HOH 371 A HOH 111 2 HOH HOH 372 A HOH 112 2 HOH HOH 373 A HOH 113 2 HOH HOH 374 A HOH 114 2 HOH HOH 375 A HOH 115 2 HOH HOH 376 A HOH 116 2 HOH HOH 377 A HOH 117 2 HOH HOH 378 A HOH 118 2 HOH HOH 379 A HOH 119 2 HOH HOH 380 A HOH 120 2 HOH HOH 381 A HOH 121 2 HOH HOH 382 A HOH 122 2 HOH HOH 383 A HOH 123 2 HOH HOH 384 A HOH 124 2 HOH HOH 385 A HOH 125 2 HOH HOH 386 A HOH 126 2 HOH HOH 387 A HOH 127 2 HOH HOH 388 A HOH 128 2 HOH HOH 389 A HOH 129 2 HOH HOH 390 A HOH 130 2 HOH HOH 391 A HOH 131 2 HOH HOH 392 A HOH 132 2 HOH HOH 393 A HOH 133 2 HOH HOH 394 A HOH 134 2 HOH HOH 395 A HOH 135 2 HOH HOH 396 A HOH 136 2 HOH HOH 397 A HOH 137 2 HOH HOH 398 A HOH 138 2 HOH HOH 399 A HOH 139 2 HOH HOH 400 A HOH 140 2 HOH HOH 401 A HOH 141 2 HOH HOH 402 A HOH 142 2 HOH HOH 403 A HOH 143 2 HOH HOH 404 A HOH 144 2 HOH HOH 405 A HOH 145 2 HOH HOH 406 A HOH 146 2 HOH HOH 407 A HOH 147 2 HOH HOH 408 A HOH 148 2 HOH HOH 409 A HOH 149 2 HOH HOH 410 A HOH 150 2 HOH HOH 411 A HOH 151 2 HOH HOH 412 A HOH 152 2 HOH HOH 413 A n 1 20 A n 2 21 A n 3 22 A n 4 23 A n 5 24 A n 6 25 A n 7 26 A n 8 27 A n 9 28 A n 10 29 A ARG 30 n 11 ARG 30 A HIS 31 n 12 HIS 31 A SER 32 n 13 SER 32 A SER 33 n 14 SER 33 A PRO 34 n 15 PRO 34 A GLN 35 n 16 GLN 35 A GLU 36 n 17 GLU 36 A ALA 37 n 18 ALA 37 A PHE 38 n 19 PHE 38 A GLU 39 n 20 GLU 39 A ARG 40 n 21 ARG 40 A ALA 41 n 22 ALA 41 A MET 42 n 23 MET 42 A GLU 43 n 24 GLU 43 A PHE 44 n 25 PHE 44 A TYR 45 n 26 TYR 45 A ASN 46 n 27 ASN 46 A GLN 47 n 28 GLN 47 A GLY 48 n 29 GLY 48 A LYS 49 n 30 LYS 49 A TYR 50 n 31 TYR 50 A ASP 51 n 32 ASP 51 A ARG 52 n 33 ARG 52 A ALA 53 n 34 ALA 53 A ILE 54 n 35 ILE 54 A GLU 55 n 36 GLU 55 A TYR 56 n 37 TYR 56 A PHE 57 n 38 PHE 57 A LYS 58 n 39 LYS 58 A ALA 59 n 40 ALA 59 A VAL 60 n 41 VAL 60 A PHE 61 n 42 PHE 61 A THR 62 n 43 THR 62 A TYR 63 n 44 TYR 63 A GLY 64 n 45 GLY 64 A ARG 65 n 46 ARG 65 A THR 66 n 47 THR 66 A HIS 67 n 48 HIS 67 A GLU 68 n 49 GLU 68 A TRP 69 n 50 TRP 69 A ALA 70 n 51 ALA 70 A ALA 71 n 52 ALA 71 A ASP 72 n 53 ASP 72 A ALA 73 n 54 ALA 73 A GLN 74 n 55 GLN 74 A PHE 75 n 56 PHE 75 A TYR 76 n 57 TYR 76 A LEU 77 n 58 LEU 77 A ALA 78 n 59 ALA 78 A ARG 79 n 60 ARG 79 A ALA 80 n 61 ALA 80 A TYR 81 n 62 TYR 81 A TYR 82 n 63 TYR 82 A GLN 83 n 64 GLN 83 A ASN 84 n 65 ASN 84 A LYS 85 n 66 LYS 85 A GLU 86 n 67 GLU 86 A TYR 87 n 68 TYR 87 A LEU 88 n 69 LEU 88 A LEU 89 n 70 LEU 89 A ALA 90 n 71 ALA 90 A ALA 91 n 72 ALA 91 A SER 92 n 73 SER 92 A GLU 93 n 74 GLU 93 A TYR 94 n 75 TYR 94 A GLU 95 n 76 GLU 95 A ARG 96 n 77 ARG 96 A PHE 97 n 78 PHE 97 A ILE 98 n 79 ILE 98 A GLN 99 n 80 GLN 99 A ILE 100 n 81 ILE 100 A TYR 101 n 82 TYR 101 A GLN 102 n 83 GLN 102 A ILE 103 n 84 ILE 103 A ASP 104 n 85 ASP 104 A PRO 105 n 86 PRO 105 A ARG 106 n 87 ARG 106 A VAL 107 n 88 VAL 107 A PRO 108 n 89 PRO 108 A GLN 109 n 90 GLN 109 A ALA 110 n 91 ALA 110 A GLU 111 n 92 GLU 111 A TYR 112 n 93 TYR 112 A GLU 113 n 94 GLU 113 A ARG 114 n 95 ARG 114 A ALA 115 n 96 ALA 115 A MET 116 n 97 MET 116 A CYS 117 n 98 CYS 117 A TYR 118 n 99 TYR 118 A TYR 119 n 100 TYR 119 A LYS 120 n 101 LYS 120 A LEU 121 n 102 LEU 121 A SER 122 n 103 SER 122 A PRO 123 n 104 PRO 123 A PRO 124 n 105 PRO 124 A TYR 125 n 106 TYR 125 A GLU 126 n 107 GLU 126 A LEU 127 n 108 LEU 127 A ASP 128 n 109 ASP 128 A GLN 129 n 110 GLN 129 A THR 130 n 111 THR 130 A ASP 131 n 112 ASP 131 A THR 132 n 113 THR 132 A ARG 133 n 114 ARG 133 A LYS 134 n 115 LYS 134 A ALA 135 n 116 ALA 135 A ILE 136 n 117 ILE 136 A GLU 137 n 118 GLU 137 A ALA 138 n 119 ALA 138 A PHE 139 n 120 PHE 139 A GLN 140 n 121 GLN 140 A LEU 141 n 122 LEU 141 A PHE 142 n 123 PHE 142 A ILE 143 n 124 ILE 143 A ASP 144 n 125 ASP 144 A ARG 145 n 126 ARG 145 A TYR 146 n 127 TYR 146 A PRO 147 n 128 PRO 147 A ASN 148 n 129 ASN 148 A HIS 149 n 130 HIS 149 A GLU 150 n 131 GLU 150 A LEU 151 n 132 LEU 151 A VAL 152 n 133 VAL 152 A ASP 153 n 134 ASP 153 A ASP 154 n 135 ASP 154 A ALA 155 n 136 ALA 155 A THR 156 n 137 THR 156 A GLN 157 n 138 GLN 157 A LYS 158 n 139 LYS 158 A ILE 159 n 140 ILE 159 A ARG 160 n 141 ARG 160 A GLU 161 n 142 GLU 161 A LEU 162 n 143 LEU 162 A ARG 163 n 144 ARG 163 A ALA 164 n 145 ALA 164 A LYS 165 n 146 LYS 165 A LEU 166 n 147 LEU 166 A ALA 167 n 148 ALA 167 A ARG 168 n 149 ARG 168 A LYS 169 n 150 LYS 169 A GLN 170 n 151 GLN 170 A TYR 171 n 152 TYR 171 A GLU 172 n 153 GLU 172 A ALA 173 n 154 ALA 173 A ALA 174 n 155 ALA 174 A ARG 175 n 156 ARG 175 A LEU 176 n 157 LEU 176 A TYR 177 n 158 TYR 177 A GLU 178 n 159 GLU 178 A ARG 179 n 160 ARG 179 A ARG 180 n 161 ARG 180 A GLU 181 n 162 GLU 181 A LEU 182 n 163 LEU 182 A TYR 183 n 164 TYR 183 A GLU 184 n 165 GLU 184 A ALA 185 n 166 ALA 185 A ALA 186 n 167 ALA 186 A ALA 187 n 168 ALA 187 A VAL 188 n 169 VAL 188 A THR 189 n 170 THR 189 A TYR 190 n 171 TYR 190 A GLU 191 n 172 GLU 191 A ALA 192 n 173 ALA 192 A VAL 193 n 174 VAL 193 A PHE 194 n 175 PHE 194 A ASP 195 n 176 ASP 195 A ALA 196 n 177 ALA 196 A TYR 197 n 178 TYR 197 A PRO 198 n 179 PRO 198 A ASP 199 n 180 ASP 199 A THR 200 n 181 THR 200 A PRO 201 n 182 PRO 201 A TRP 202 n 183 TRP 202 A ALA 203 n 184 ALA 203 A ASP 204 n 185 ASP 204 A ASP 205 n 186 ASP 205 A ALA 206 n 187 ALA 206 A LEU 207 n 188 LEU 207 A VAL 208 n 189 VAL 208 A GLY 209 n 190 GLY 209 A ALA 210 n 191 ALA 210 A MET 211 n 192 MET 211 A ARG 212 n 193 ARG 212 A ALA 213 n 194 ALA 213 A TYR 214 n 195 TYR 214 A ILE 215 n 196 ILE 215 A ALA 216 n 197 ALA 216 A TYR 217 n 198 TYR 217 A ALA 218 n 199 ALA 218 A GLU 219 n 200 GLU 219 A GLN 220 n 201 GLN 220 A SER 221 n 202 SER 221 A VAL 222 n 203 VAL 222 A ARG 223 n 204 ARG 223 A ALA 224 n 205 ALA 224 A ARG 225 n 206 ARG 225 A GLN 226 n 207 GLN 226 A PRO 227 n 208 PRO 227 A GLU 228 n 209 GLU 228 A ARG 229 n 210 ARG 229 A TYR 230 n 211 TYR 230 A ARG 231 n 212 ARG 231 A ARG 232 n 213 ARG 232 A ALA 233 n 214 ALA 233 A VAL 234 n 215 VAL 234 A GLU 235 n 216 GLU 235 A LEU 236 n 217 LEU 236 A TYR 237 n 218 TYR 237 A GLU 238 n 219 GLU 238 A ARG 239 n 220 ARG 239 A LEU 240 n 221 LEU 240 A LEU 241 n 222 LEU 241 A GLN 242 n 223 GLN 242 A ILE 243 n 224 ILE 243 A PHE 244 n 225 PHE 244 A PRO 245 n 226 PRO 245 A ASP 246 n 227 ASP 246 A SER 247 n 228 SER 247 A PRO 248 n 229 PRO 248 A LEU 249 n 230 LEU 249 A LEU 250 n 231 LEU 250 A ARG 251 n 232 ARG 251 A THR 252 n 233 THR 252 A ALA 253 n 234 ALA 253 A GLU 254 n 235 GLU 254 A GLU 255 n 236 GLU 255 A LEU 256 n 237 LEU 256 A TYR 257 n 238 TYR 257 A THR 258 n 239 THR 258 A ARG 259 n 240 ARG 259 A ALA 260 n 241 ALA 260 A ARG 261 n 242 ARG 261 A GLN 262 n 243 GLN 262 A ARG 263 n 244 ARG 263 A LEU 264 n 245 LEU 264 A THR 265 n 246 THR 265 A GLU 266 n 247 GLU 266 A LEU 267 n 248 LEU 267 A GLU 268 n 249 GLU 268 A GLY 269 n 250 GLY 269 A ASP 270 n 251 ASP 270 A ALA 271 n 252 ALA 271 A SER 272 n 253 SER 272 A LEU 273 n 254 LEU 273 A ALA 274 n 255 ALA 274 A GLN 275 n 256 GLN 275 A GLY 276 n 257 GLY 276 A GLN 277 n 258 GLN 277 A ARG 278 n 259 ARG 278 A GLN 279 n 260 GLN 279 A ASN 280 n 261 ASN 280 A 0.9605 0.8766 1.2584 0.7792 1.0042 2.0597 0.3079 -0.1858 -0.2895 0.8595 -0.1681 0.1606 0.8950 -0.0465 0.1288 0.6419 -0.0930 0.2136 0.2390 0.0685 0.3315 refined 34.2869 18.1576 85.0399 X-RAY DIFFRACTION 0.5727 0.6164 -0.2826 1.2405 0.0089 0.3081 -0.0486 -0.3196 -0.0111 1.2087 -0.0496 0.1119 0.1080 -0.1050 0.0622 0.6111 -0.0108 0.0997 0.1606 0.0441 0.2475 refined 41.5367 22.7949 84.6454 X-RAY DIFFRACTION 0.0276 0.1375 -0.1824 2.9590 -0.4989 0.9228 -0.0297 0.0602 -0.0807 0.5991 0.0740 0.2550 -0.0497 -0.0641 -0.0184 0.2484 -0.0011 0.0690 0.1613 0.0343 0.2262 refined 39.9497 35.1586 72.8282 X-RAY DIFFRACTION 1.8989 -0.6827 -0.3250 1.5576 -0.2502 0.0693 0.1227 0.3771 0.1072 -0.3685 -0.0913 0.0615 -0.0552 0.0876 -0.0192 0.2029 -0.0338 -0.0186 0.2096 0.0099 0.2402 refined 44.8153 36.8895 61.7116 X-RAY DIFFRACTION 0.7112 -0.6264 -0.0556 1.6142 -0.2685 0.7887 0.2113 0.1077 -0.2280 -0.3618 -0.0468 0.1767 -0.0548 -0.0380 -0.1385 0.1888 -0.0018 -0.0406 0.2231 0.0273 0.1967 refined 32.6556 59.3436 55.3410 X-RAY DIFFRACTION 0.5548 0.3946 0.0386 1.2713 0.0244 0.6916 0.1134 0.0481 -0.0573 -0.2406 -0.0075 0.0631 -0.0603 -0.1122 -0.1026 0.1667 -0.0134 -0.0192 0.1856 0.0089 0.1143 refined 35.8847 58.4481 48.5172 X-RAY DIFFRACTION 0.8347 0.8711 0.0222 2.0167 -1.1894 1.1327 0.2708 0.0788 0.0602 0.1519 -0.2034 -0.3103 -0.2596 0.0511 0.0017 0.2293 -0.0161 -0.0093 0.2183 0.0093 0.1746 refined 39.9272 71.6809 44.1786 X-RAY DIFFRACTION 2.1516 -0.0851 -0.4223 1.4519 -0.9196 1.2566 -0.2483 0.0021 -0.3860 -0.5185 0.3778 -0.3035 0.5495 0.2289 -0.0418 0.4183 -0.0063 -0.0482 0.2195 -0.0426 0.2836 refined 39.2442 53.1445 39.2237 X-RAY DIFFRACTION 1.0814 -0.0884 -0.0714 0.7563 -0.4034 2.6577 -0.0555 -0.0153 0.3301 -0.1717 -0.0268 0.1575 -0.1843 -0.0659 0.0683 0.2582 0.0529 0.0014 0.2962 0.0069 0.2137 refined 38.6603 72.6269 35.7316 X-RAY DIFFRACTION 2.7208 -0.2039 -0.1995 4.6567 2.6387 5.0159 -0.3157 -0.0363 0.0127 -0.7645 0.1567 0.0305 -0.7282 0.7013 0.0731 0.4630 0.1017 0.0711 0.4235 0.1146 0.5709 refined 48.2460 81.0927 47.0604 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 (chain A and resid 11:32) X-RAY DIFFRACTION 2 (chain A and resid 33:61) X-RAY DIFFRACTION 3 (chain A and resid 62:113) X-RAY DIFFRACTION 4 (chain A and resid 114:143) X-RAY DIFFRACTION 5 (chain A and resid 144:177) X-RAY DIFFRACTION 6 (chain A and resid 178:199) X-RAY DIFFRACTION 7 (chain A and resid 200:219) X-RAY DIFFRACTION 8 (chain A and resid 220:234) X-RAY DIFFRACTION 9 (chain A and resid 235:254) X-RAY DIFFRACTION 10 (chain A and resid 255:261) author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A HOH 1 B HOH 1 A HOH 316 B HOH 1 A HOH 399 B HOH 1 A GLY 20 A GLY 1 1 Y 1 A HIS 21 A HIS 2 1 Y 1 A MET 22 A MET 3 1 Y 1 A ALA 23 A ALA 4 1 Y 1 A ALA 24 A ALA 5 1 Y 1 A GLY 25 A GLY 6 1 Y 1 A SER 26 A SER 7 1 Y 1 A GLY 27 A GLY 8 1 Y 1 A ARG 28 A ARG 9 1 Y 1 A LEU 29 A LEU 10 1 Y 1 A A OH O TYR HOH 217 318 1.92 1 A A O O HOH HOH 402 412 1.93 1 A A O O HOH HOH 356 358 2.01 1 A A O O HOH HOH 309 359 2.01 1 A A OD2 O ASP HOH 131 296 2.07 1 A A O O HOH HOH 315 369 2.12 1 A A OH O TYR HOH 125 385 2.13 1 A A OD1 O ASP HOH 204 16 2.15 1 A A OD1 O ASP HOH 205 16 2.16 1 A A SD O MET HOH 211 306 2.19 1 A PHE 244 -114.33 62.93 1 A GLN 275 84.47 105.88 1.8629 0.0000 -0.0000 1.8629 0.0000 -3.7257 0.2097 0.1687 0.1706 2.15 1032 20524 5.03 99.45 0.30 1 1.99 SAD 0.72 1.00 ML FLAT BULK SOLVENT MODEL 48.338 0.409 2.15 152 2269 0 0 2117 0.007 2169 1.007 2936 15.474 826 0.077 294 0.004 392 0.2791 0.2072 2.2616 145 2715 98.00 0.2238 0.1870 2.4034 148 2791 100.00 0.2437 0.1809 2.5889 145 2810 100.00 0.2326 0.1937 2.8494 153 2814 100.00 0.2335 0.1813 3.2617 140 2787 100.00 0.2018 0.1442 4.1093 147 2787 99.00 0.1682 0.1560 57.2052 154 2788 100.00 2.15 42 3QKY 20524 1 refinement PHENIX (phenix.refine: 1.6.4_486) Crystal structure of Rhodothermus marinus BamD 1 N N 2 N N A SER 33 A SER 14 HELX_P A GLN 47 A GLN 28 1 1 15 A LYS 49 A LYS 30 HELX_P A PHE 61 A PHE 42 1 2 13 A THR 62 A THR 43 HELX_P A GLY 64 A GLY 45 5 3 3 A TRP 69 A TRP 50 HELX_P A ASN 84 A ASN 65 1 4 16 A GLU 86 A GLU 67 HELX_P A TYR 101 A TYR 82 1 5 16 A ARG 106 A ARG 87 HELX_P A SER 122 A SER 103 1 6 17 A GLN 129 A GLN 110 HELX_P A TYR 146 A TYR 127 1 7 18 A LEU 151 A LEU 132 HELX_P A ARG 180 A ARG 161 1 8 30 A LEU 182 A LEU 163 HELX_P A TYR 197 A TYR 178 1 9 16 A TRP 202 A TRP 183 HELX_P A GLN 220 A GLN 201 1 10 19 A VAL 222 A VAL 203 HELX_P A ALA 224 A ALA 205 5 11 3 A ARG 225 A ARG 206 HELX_P A PHE 244 A PHE 225 1 12 20 A PRO 248 A PRO 229 HELX_P A GLY 269 A GLY 250 1 13 22 A GLY 276 A GLY 257 HELX_P A ASN 280 A ASN 261 5 14 5 MEMBRANE PROTEIN outer membrane, MEMBRANE PROTEIN D0MFQ0_RHOM4 UNP 1 24 D0MFQ0 AGSGRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELY EAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQR LTELEGDASLAQGQRQN 24 280 3QKY 24 280 D0MFQ0 A 1 5 261 1 expression tag GLY 20 3QKY A D0MFQ0 UNP 1 1 expression tag HIS 21 3QKY A D0MFQ0 UNP 2 1 expression tag MET 22 3QKY A D0MFQ0 UNP 3 1 expression tag ALA 23 3QKY A D0MFQ0 UNP 4 146 H 3