0.008744
0.005048
0.000000
0.000000
0.010096
0.000000
0.000000
0.000000
0.012882
0.00000
0.00000
0.00000
Sandoval, C.M.
Baker, S.L.
Jansen, K.
Metzner, S.I.
Sousa, M.C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
9
90.00
90.00
120.00
114.370
114.370
77.630
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
1089-8638
409
348
357
10.1016/j.jmb.2011.03.035
21463635
Crystal structure of BamD: an essential component of the beta-Barrel assembly machinery of gram-negative bacteria.
2011
10.2210/pdb3qky/pdb
pdb_00003qky
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
CCD
ADSC QUANTUM 315r
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
8.2.1
ALS
1.0
SYNCHROTRON
ALS BEAMLINE 8.2.1
30879.482
Outer membrane assembly lipoprotein YfiO
Residues 24-280
1
man
polymer
18.015
water
152
nat
water
no
no
GHMAAGSGRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ
IYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYER
RELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTR
ARQRLTELEGDASLAQGQRQN
GHMAAGSGRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ
IYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYER
RELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTR
ARQRLTELEGDASLAQGQRQN
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Rhodothermus obamensis
ATCC 43812/DSM 4252/R-10
sample
Rmar_0679
518766
Rhodothermus marinus
3.16
61.13
citation
database_2
struct_ref_seq_dif
repository
Initial release
Version format compliance
Atomic model
Database references
1
0
2011-04-20
1
1
2011-07-13
1
2
2011-11-16
1
3
2023-07-26
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.title
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
RCSB
Y
RCSB
2011-02-02
REL
REL
HOH
water
HOH
1
2
HOH
HOH
1
A
HOH
2
2
HOH
HOH
2
A
HOH
3
2
HOH
HOH
3
A
HOH
4
2
HOH
HOH
4
A
HOH
5
2
HOH
HOH
5
A
HOH
6
2
HOH
HOH
6
A
HOH
7
2
HOH
HOH
7
A
HOH
8
2
HOH
HOH
8
A
HOH
9
2
HOH
HOH
9
A
HOH
10
2
HOH
HOH
10
A
HOH
11
2
HOH
HOH
11
A
HOH
12
2
HOH
HOH
12
A
HOH
13
2
HOH
HOH
13
A
HOH
14
2
HOH
HOH
14
A
HOH
15
2
HOH
HOH
15
A
HOH
16
2
HOH
HOH
16
A
HOH
17
2
HOH
HOH
17
A
HOH
18
2
HOH
HOH
18
A
HOH
19
2
HOH
HOH
19
A
HOH
20
2
HOH
HOH
281
A
HOH
21
2
HOH
HOH
282
A
HOH
22
2
HOH
HOH
283
A
HOH
23
2
HOH
HOH
284
A
HOH
24
2
HOH
HOH
285
A
HOH
25
2
HOH
HOH
286
A
HOH
26
2
HOH
HOH
287
A
HOH
27
2
HOH
HOH
288
A
HOH
28
2
HOH
HOH
289
A
HOH
29
2
HOH
HOH
290
A
HOH
30
2
HOH
HOH
291
A
HOH
31
2
HOH
HOH
292
A
HOH
32
2
HOH
HOH
293
A
HOH
33
2
HOH
HOH
294
A
HOH
34
2
HOH
HOH
295
A
HOH
35
2
HOH
HOH
296
A
HOH
36
2
HOH
HOH
297
A
HOH
37
2
HOH
HOH
298
A
HOH
38
2
HOH
HOH
299
A
HOH
39
2
HOH
HOH
300
A
HOH
40
2
HOH
HOH
301
A
HOH
41
2
HOH
HOH
302
A
HOH
42
2
HOH
HOH
303
A
HOH
43
2
HOH
HOH
304
A
HOH
44
2
HOH
HOH
305
A
HOH
45
2
HOH
HOH
306
A
HOH
46
2
HOH
HOH
307
A
HOH
47
2
HOH
HOH
308
A
HOH
48
2
HOH
HOH
309
A
HOH
49
2
HOH
HOH
310
A
HOH
50
2
HOH
HOH
311
A
HOH
51
2
HOH
HOH
312
A
HOH
52
2
HOH
HOH
313
A
HOH
53
2
HOH
HOH
314
A
HOH
54
2
HOH
HOH
315
A
HOH
55
2
HOH
HOH
316
A
HOH
56
2
HOH
HOH
317
A
HOH
57
2
HOH
HOH
318
A
HOH
58
2
HOH
HOH
319
A
HOH
59
2
HOH
HOH
320
A
HOH
60
2
HOH
HOH
321
A
HOH
61
2
HOH
HOH
322
A
HOH
62
2
HOH
HOH
323
A
HOH
63
2
HOH
HOH
324
A
HOH
64
2
HOH
HOH
325
A
HOH
65
2
HOH
HOH
326
A
HOH
66
2
HOH
HOH
327
A
HOH
67
2
HOH
HOH
328
A
HOH
68
2
HOH
HOH
329
A
HOH
69
2
HOH
HOH
330
A
HOH
70
2
HOH
HOH
331
A
HOH
71
2
HOH
HOH
332
A
HOH
72
2
HOH
HOH
333
A
HOH
73
2
HOH
HOH
334
A
HOH
74
2
HOH
HOH
335
A
HOH
75
2
HOH
HOH
336
A
HOH
76
2
HOH
HOH
337
A
HOH
77
2
HOH
HOH
338
A
HOH
78
2
HOH
HOH
339
A
HOH
79
2
HOH
HOH
340
A
HOH
80
2
HOH
HOH
341
A
HOH
81
2
HOH
HOH
342
A
HOH
82
2
HOH
HOH
343
A
HOH
83
2
HOH
HOH
344
A
HOH
84
2
HOH
HOH
345
A
HOH
85
2
HOH
HOH
346
A
HOH
86
2
HOH
HOH
347
A
HOH
87
2
HOH
HOH
348
A
HOH
88
2
HOH
HOH
349
A
HOH
89
2
HOH
HOH
350
A
HOH
90
2
HOH
HOH
351
A
HOH
91
2
HOH
HOH
352
A
HOH
92
2
HOH
HOH
353
A
HOH
93
2
HOH
HOH
354
A
HOH
94
2
HOH
HOH
355
A
HOH
95
2
HOH
HOH
356
A
HOH
96
2
HOH
HOH
357
A
HOH
97
2
HOH
HOH
358
A
HOH
98
2
HOH
HOH
359
A
HOH
99
2
HOH
HOH
360
A
HOH
100
2
HOH
HOH
361
A
HOH
101
2
HOH
HOH
362
A
HOH
102
2
HOH
HOH
363
A
HOH
103
2
HOH
HOH
364
A
HOH
104
2
HOH
HOH
365
A
HOH
105
2
HOH
HOH
366
A
HOH
106
2
HOH
HOH
367
A
HOH
107
2
HOH
HOH
368
A
HOH
108
2
HOH
HOH
369
A
HOH
109
2
HOH
HOH
370
A
HOH
110
2
HOH
HOH
371
A
HOH
111
2
HOH
HOH
372
A
HOH
112
2
HOH
HOH
373
A
HOH
113
2
HOH
HOH
374
A
HOH
114
2
HOH
HOH
375
A
HOH
115
2
HOH
HOH
376
A
HOH
116
2
HOH
HOH
377
A
HOH
117
2
HOH
HOH
378
A
HOH
118
2
HOH
HOH
379
A
HOH
119
2
HOH
HOH
380
A
HOH
120
2
HOH
HOH
381
A
HOH
121
2
HOH
HOH
382
A
HOH
122
2
HOH
HOH
383
A
HOH
123
2
HOH
HOH
384
A
HOH
124
2
HOH
HOH
385
A
HOH
125
2
HOH
HOH
386
A
HOH
126
2
HOH
HOH
387
A
HOH
127
2
HOH
HOH
388
A
HOH
128
2
HOH
HOH
389
A
HOH
129
2
HOH
HOH
390
A
HOH
130
2
HOH
HOH
391
A
HOH
131
2
HOH
HOH
392
A
HOH
132
2
HOH
HOH
393
A
HOH
133
2
HOH
HOH
394
A
HOH
134
2
HOH
HOH
395
A
HOH
135
2
HOH
HOH
396
A
HOH
136
2
HOH
HOH
397
A
HOH
137
2
HOH
HOH
398
A
HOH
138
2
HOH
HOH
399
A
HOH
139
2
HOH
HOH
400
A
HOH
140
2
HOH
HOH
401
A
HOH
141
2
HOH
HOH
402
A
HOH
142
2
HOH
HOH
403
A
HOH
143
2
HOH
HOH
404
A
HOH
144
2
HOH
HOH
405
A
HOH
145
2
HOH
HOH
406
A
HOH
146
2
HOH
HOH
407
A
HOH
147
2
HOH
HOH
408
A
HOH
148
2
HOH
HOH
409
A
HOH
149
2
HOH
HOH
410
A
HOH
150
2
HOH
HOH
411
A
HOH
151
2
HOH
HOH
412
A
HOH
152
2
HOH
HOH
413
A
n
1
20
A
n
2
21
A
n
3
22
A
n
4
23
A
n
5
24
A
n
6
25
A
n
7
26
A
n
8
27
A
n
9
28
A
n
10
29
A
ARG
30
n
11
ARG
30
A
HIS
31
n
12
HIS
31
A
SER
32
n
13
SER
32
A
SER
33
n
14
SER
33
A
PRO
34
n
15
PRO
34
A
GLN
35
n
16
GLN
35
A
GLU
36
n
17
GLU
36
A
ALA
37
n
18
ALA
37
A
PHE
38
n
19
PHE
38
A
GLU
39
n
20
GLU
39
A
ARG
40
n
21
ARG
40
A
ALA
41
n
22
ALA
41
A
MET
42
n
23
MET
42
A
GLU
43
n
24
GLU
43
A
PHE
44
n
25
PHE
44
A
TYR
45
n
26
TYR
45
A
ASN
46
n
27
ASN
46
A
GLN
47
n
28
GLN
47
A
GLY
48
n
29
GLY
48
A
LYS
49
n
30
LYS
49
A
TYR
50
n
31
TYR
50
A
ASP
51
n
32
ASP
51
A
ARG
52
n
33
ARG
52
A
ALA
53
n
34
ALA
53
A
ILE
54
n
35
ILE
54
A
GLU
55
n
36
GLU
55
A
TYR
56
n
37
TYR
56
A
PHE
57
n
38
PHE
57
A
LYS
58
n
39
LYS
58
A
ALA
59
n
40
ALA
59
A
VAL
60
n
41
VAL
60
A
PHE
61
n
42
PHE
61
A
THR
62
n
43
THR
62
A
TYR
63
n
44
TYR
63
A
GLY
64
n
45
GLY
64
A
ARG
65
n
46
ARG
65
A
THR
66
n
47
THR
66
A
HIS
67
n
48
HIS
67
A
GLU
68
n
49
GLU
68
A
TRP
69
n
50
TRP
69
A
ALA
70
n
51
ALA
70
A
ALA
71
n
52
ALA
71
A
ASP
72
n
53
ASP
72
A
ALA
73
n
54
ALA
73
A
GLN
74
n
55
GLN
74
A
PHE
75
n
56
PHE
75
A
TYR
76
n
57
TYR
76
A
LEU
77
n
58
LEU
77
A
ALA
78
n
59
ALA
78
A
ARG
79
n
60
ARG
79
A
ALA
80
n
61
ALA
80
A
TYR
81
n
62
TYR
81
A
TYR
82
n
63
TYR
82
A
GLN
83
n
64
GLN
83
A
ASN
84
n
65
ASN
84
A
LYS
85
n
66
LYS
85
A
GLU
86
n
67
GLU
86
A
TYR
87
n
68
TYR
87
A
LEU
88
n
69
LEU
88
A
LEU
89
n
70
LEU
89
A
ALA
90
n
71
ALA
90
A
ALA
91
n
72
ALA
91
A
SER
92
n
73
SER
92
A
GLU
93
n
74
GLU
93
A
TYR
94
n
75
TYR
94
A
GLU
95
n
76
GLU
95
A
ARG
96
n
77
ARG
96
A
PHE
97
n
78
PHE
97
A
ILE
98
n
79
ILE
98
A
GLN
99
n
80
GLN
99
A
ILE
100
n
81
ILE
100
A
TYR
101
n
82
TYR
101
A
GLN
102
n
83
GLN
102
A
ILE
103
n
84
ILE
103
A
ASP
104
n
85
ASP
104
A
PRO
105
n
86
PRO
105
A
ARG
106
n
87
ARG
106
A
VAL
107
n
88
VAL
107
A
PRO
108
n
89
PRO
108
A
GLN
109
n
90
GLN
109
A
ALA
110
n
91
ALA
110
A
GLU
111
n
92
GLU
111
A
TYR
112
n
93
TYR
112
A
GLU
113
n
94
GLU
113
A
ARG
114
n
95
ARG
114
A
ALA
115
n
96
ALA
115
A
MET
116
n
97
MET
116
A
CYS
117
n
98
CYS
117
A
TYR
118
n
99
TYR
118
A
TYR
119
n
100
TYR
119
A
LYS
120
n
101
LYS
120
A
LEU
121
n
102
LEU
121
A
SER
122
n
103
SER
122
A
PRO
123
n
104
PRO
123
A
PRO
124
n
105
PRO
124
A
TYR
125
n
106
TYR
125
A
GLU
126
n
107
GLU
126
A
LEU
127
n
108
LEU
127
A
ASP
128
n
109
ASP
128
A
GLN
129
n
110
GLN
129
A
THR
130
n
111
THR
130
A
ASP
131
n
112
ASP
131
A
THR
132
n
113
THR
132
A
ARG
133
n
114
ARG
133
A
LYS
134
n
115
LYS
134
A
ALA
135
n
116
ALA
135
A
ILE
136
n
117
ILE
136
A
GLU
137
n
118
GLU
137
A
ALA
138
n
119
ALA
138
A
PHE
139
n
120
PHE
139
A
GLN
140
n
121
GLN
140
A
LEU
141
n
122
LEU
141
A
PHE
142
n
123
PHE
142
A
ILE
143
n
124
ILE
143
A
ASP
144
n
125
ASP
144
A
ARG
145
n
126
ARG
145
A
TYR
146
n
127
TYR
146
A
PRO
147
n
128
PRO
147
A
ASN
148
n
129
ASN
148
A
HIS
149
n
130
HIS
149
A
GLU
150
n
131
GLU
150
A
LEU
151
n
132
LEU
151
A
VAL
152
n
133
VAL
152
A
ASP
153
n
134
ASP
153
A
ASP
154
n
135
ASP
154
A
ALA
155
n
136
ALA
155
A
THR
156
n
137
THR
156
A
GLN
157
n
138
GLN
157
A
LYS
158
n
139
LYS
158
A
ILE
159
n
140
ILE
159
A
ARG
160
n
141
ARG
160
A
GLU
161
n
142
GLU
161
A
LEU
162
n
143
LEU
162
A
ARG
163
n
144
ARG
163
A
ALA
164
n
145
ALA
164
A
LYS
165
n
146
LYS
165
A
LEU
166
n
147
LEU
166
A
ALA
167
n
148
ALA
167
A
ARG
168
n
149
ARG
168
A
LYS
169
n
150
LYS
169
A
GLN
170
n
151
GLN
170
A
TYR
171
n
152
TYR
171
A
GLU
172
n
153
GLU
172
A
ALA
173
n
154
ALA
173
A
ALA
174
n
155
ALA
174
A
ARG
175
n
156
ARG
175
A
LEU
176
n
157
LEU
176
A
TYR
177
n
158
TYR
177
A
GLU
178
n
159
GLU
178
A
ARG
179
n
160
ARG
179
A
ARG
180
n
161
ARG
180
A
GLU
181
n
162
GLU
181
A
LEU
182
n
163
LEU
182
A
TYR
183
n
164
TYR
183
A
GLU
184
n
165
GLU
184
A
ALA
185
n
166
ALA
185
A
ALA
186
n
167
ALA
186
A
ALA
187
n
168
ALA
187
A
VAL
188
n
169
VAL
188
A
THR
189
n
170
THR
189
A
TYR
190
n
171
TYR
190
A
GLU
191
n
172
GLU
191
A
ALA
192
n
173
ALA
192
A
VAL
193
n
174
VAL
193
A
PHE
194
n
175
PHE
194
A
ASP
195
n
176
ASP
195
A
ALA
196
n
177
ALA
196
A
TYR
197
n
178
TYR
197
A
PRO
198
n
179
PRO
198
A
ASP
199
n
180
ASP
199
A
THR
200
n
181
THR
200
A
PRO
201
n
182
PRO
201
A
TRP
202
n
183
TRP
202
A
ALA
203
n
184
ALA
203
A
ASP
204
n
185
ASP
204
A
ASP
205
n
186
ASP
205
A
ALA
206
n
187
ALA
206
A
LEU
207
n
188
LEU
207
A
VAL
208
n
189
VAL
208
A
GLY
209
n
190
GLY
209
A
ALA
210
n
191
ALA
210
A
MET
211
n
192
MET
211
A
ARG
212
n
193
ARG
212
A
ALA
213
n
194
ALA
213
A
TYR
214
n
195
TYR
214
A
ILE
215
n
196
ILE
215
A
ALA
216
n
197
ALA
216
A
TYR
217
n
198
TYR
217
A
ALA
218
n
199
ALA
218
A
GLU
219
n
200
GLU
219
A
GLN
220
n
201
GLN
220
A
SER
221
n
202
SER
221
A
VAL
222
n
203
VAL
222
A
ARG
223
n
204
ARG
223
A
ALA
224
n
205
ALA
224
A
ARG
225
n
206
ARG
225
A
GLN
226
n
207
GLN
226
A
PRO
227
n
208
PRO
227
A
GLU
228
n
209
GLU
228
A
ARG
229
n
210
ARG
229
A
TYR
230
n
211
TYR
230
A
ARG
231
n
212
ARG
231
A
ARG
232
n
213
ARG
232
A
ALA
233
n
214
ALA
233
A
VAL
234
n
215
VAL
234
A
GLU
235
n
216
GLU
235
A
LEU
236
n
217
LEU
236
A
TYR
237
n
218
TYR
237
A
GLU
238
n
219
GLU
238
A
ARG
239
n
220
ARG
239
A
LEU
240
n
221
LEU
240
A
LEU
241
n
222
LEU
241
A
GLN
242
n
223
GLN
242
A
ILE
243
n
224
ILE
243
A
PHE
244
n
225
PHE
244
A
PRO
245
n
226
PRO
245
A
ASP
246
n
227
ASP
246
A
SER
247
n
228
SER
247
A
PRO
248
n
229
PRO
248
A
LEU
249
n
230
LEU
249
A
LEU
250
n
231
LEU
250
A
ARG
251
n
232
ARG
251
A
THR
252
n
233
THR
252
A
ALA
253
n
234
ALA
253
A
GLU
254
n
235
GLU
254
A
GLU
255
n
236
GLU
255
A
LEU
256
n
237
LEU
256
A
TYR
257
n
238
TYR
257
A
THR
258
n
239
THR
258
A
ARG
259
n
240
ARG
259
A
ALA
260
n
241
ALA
260
A
ARG
261
n
242
ARG
261
A
GLN
262
n
243
GLN
262
A
ARG
263
n
244
ARG
263
A
LEU
264
n
245
LEU
264
A
THR
265
n
246
THR
265
A
GLU
266
n
247
GLU
266
A
LEU
267
n
248
LEU
267
A
GLU
268
n
249
GLU
268
A
GLY
269
n
250
GLY
269
A
ASP
270
n
251
ASP
270
A
ALA
271
n
252
ALA
271
A
SER
272
n
253
SER
272
A
LEU
273
n
254
LEU
273
A
ALA
274
n
255
ALA
274
A
GLN
275
n
256
GLN
275
A
GLY
276
n
257
GLY
276
A
GLN
277
n
258
GLN
277
A
ARG
278
n
259
ARG
278
A
GLN
279
n
260
GLN
279
A
ASN
280
n
261
ASN
280
A
0.9605
0.8766
1.2584
0.7792
1.0042
2.0597
0.3079
-0.1858
-0.2895
0.8595
-0.1681
0.1606
0.8950
-0.0465
0.1288
0.6419
-0.0930
0.2136
0.2390
0.0685
0.3315
refined
34.2869
18.1576
85.0399
X-RAY DIFFRACTION
0.5727
0.6164
-0.2826
1.2405
0.0089
0.3081
-0.0486
-0.3196
-0.0111
1.2087
-0.0496
0.1119
0.1080
-0.1050
0.0622
0.6111
-0.0108
0.0997
0.1606
0.0441
0.2475
refined
41.5367
22.7949
84.6454
X-RAY DIFFRACTION
0.0276
0.1375
-0.1824
2.9590
-0.4989
0.9228
-0.0297
0.0602
-0.0807
0.5991
0.0740
0.2550
-0.0497
-0.0641
-0.0184
0.2484
-0.0011
0.0690
0.1613
0.0343
0.2262
refined
39.9497
35.1586
72.8282
X-RAY DIFFRACTION
1.8989
-0.6827
-0.3250
1.5576
-0.2502
0.0693
0.1227
0.3771
0.1072
-0.3685
-0.0913
0.0615
-0.0552
0.0876
-0.0192
0.2029
-0.0338
-0.0186
0.2096
0.0099
0.2402
refined
44.8153
36.8895
61.7116
X-RAY DIFFRACTION
0.7112
-0.6264
-0.0556
1.6142
-0.2685
0.7887
0.2113
0.1077
-0.2280
-0.3618
-0.0468
0.1767
-0.0548
-0.0380
-0.1385
0.1888
-0.0018
-0.0406
0.2231
0.0273
0.1967
refined
32.6556
59.3436
55.3410
X-RAY DIFFRACTION
0.5548
0.3946
0.0386
1.2713
0.0244
0.6916
0.1134
0.0481
-0.0573
-0.2406
-0.0075
0.0631
-0.0603
-0.1122
-0.1026
0.1667
-0.0134
-0.0192
0.1856
0.0089
0.1143
refined
35.8847
58.4481
48.5172
X-RAY DIFFRACTION
0.8347
0.8711
0.0222
2.0167
-1.1894
1.1327
0.2708
0.0788
0.0602
0.1519
-0.2034
-0.3103
-0.2596
0.0511
0.0017
0.2293
-0.0161
-0.0093
0.2183
0.0093
0.1746
refined
39.9272
71.6809
44.1786
X-RAY DIFFRACTION
2.1516
-0.0851
-0.4223
1.4519
-0.9196
1.2566
-0.2483
0.0021
-0.3860
-0.5185
0.3778
-0.3035
0.5495
0.2289
-0.0418
0.4183
-0.0063
-0.0482
0.2195
-0.0426
0.2836
refined
39.2442
53.1445
39.2237
X-RAY DIFFRACTION
1.0814
-0.0884
-0.0714
0.7563
-0.4034
2.6577
-0.0555
-0.0153
0.3301
-0.1717
-0.0268
0.1575
-0.1843
-0.0659
0.0683
0.2582
0.0529
0.0014
0.2962
0.0069
0.2137
refined
38.6603
72.6269
35.7316
X-RAY DIFFRACTION
2.7208
-0.2039
-0.1995
4.6567
2.6387
5.0159
-0.3157
-0.0363
0.0127
-0.7645
0.1567
0.0305
-0.7282
0.7013
0.0731
0.4630
0.1017
0.0711
0.4235
0.1146
0.5709
refined
48.2460
81.0927
47.0604
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
(chain A and resid 11:32)
X-RAY DIFFRACTION
2
(chain A and resid 33:61)
X-RAY DIFFRACTION
3
(chain A and resid 62:113)
X-RAY DIFFRACTION
4
(chain A and resid 114:143)
X-RAY DIFFRACTION
5
(chain A and resid 144:177)
X-RAY DIFFRACTION
6
(chain A and resid 178:199)
X-RAY DIFFRACTION
7
(chain A and resid 200:219)
X-RAY DIFFRACTION
8
(chain A and resid 220:234)
X-RAY DIFFRACTION
9
(chain A and resid 235:254)
X-RAY DIFFRACTION
10
(chain A and resid 255:261)
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
HOH
1
B
HOH
1
A
HOH
316
B
HOH
1
A
HOH
399
B
HOH
1
A
GLY
20
A
GLY
1
1
Y
1
A
HIS
21
A
HIS
2
1
Y
1
A
MET
22
A
MET
3
1
Y
1
A
ALA
23
A
ALA
4
1
Y
1
A
ALA
24
A
ALA
5
1
Y
1
A
GLY
25
A
GLY
6
1
Y
1
A
SER
26
A
SER
7
1
Y
1
A
GLY
27
A
GLY
8
1
Y
1
A
ARG
28
A
ARG
9
1
Y
1
A
LEU
29
A
LEU
10
1
Y
1
A
A
OH
O
TYR
HOH
217
318
1.92
1
A
A
O
O
HOH
HOH
402
412
1.93
1
A
A
O
O
HOH
HOH
356
358
2.01
1
A
A
O
O
HOH
HOH
309
359
2.01
1
A
A
OD2
O
ASP
HOH
131
296
2.07
1
A
A
O
O
HOH
HOH
315
369
2.12
1
A
A
OH
O
TYR
HOH
125
385
2.13
1
A
A
OD1
O
ASP
HOH
204
16
2.15
1
A
A
OD1
O
ASP
HOH
205
16
2.16
1
A
A
SD
O
MET
HOH
211
306
2.19
1
A
PHE
244
-114.33
62.93
1
A
GLN
275
84.47
105.88
1.8629
0.0000
-0.0000
1.8629
0.0000
-3.7257
0.2097
0.1687
0.1706
2.15
1032
20524
5.03
99.45
0.30
1
1.99
SAD
0.72
1.00
ML
FLAT BULK SOLVENT MODEL
48.338
0.409
2.15
152
2269
0
0
2117
0.007
2169
1.007
2936
15.474
826
0.077
294
0.004
392
0.2791
0.2072
2.2616
145
2715
98.00
0.2238
0.1870
2.4034
148
2791
100.00
0.2437
0.1809
2.5889
145
2810
100.00
0.2326
0.1937
2.8494
153
2814
100.00
0.2335
0.1813
3.2617
140
2787
100.00
0.2018
0.1442
4.1093
147
2787
99.00
0.1682
0.1560
57.2052
154
2788
100.00
2.15
42
3QKY
20524
1
refinement
PHENIX
(phenix.refine: 1.6.4_486)
Crystal structure of Rhodothermus marinus BamD
1
N
N
2
N
N
A
SER
33
A
SER
14
HELX_P
A
GLN
47
A
GLN
28
1
1
15
A
LYS
49
A
LYS
30
HELX_P
A
PHE
61
A
PHE
42
1
2
13
A
THR
62
A
THR
43
HELX_P
A
GLY
64
A
GLY
45
5
3
3
A
TRP
69
A
TRP
50
HELX_P
A
ASN
84
A
ASN
65
1
4
16
A
GLU
86
A
GLU
67
HELX_P
A
TYR
101
A
TYR
82
1
5
16
A
ARG
106
A
ARG
87
HELX_P
A
SER
122
A
SER
103
1
6
17
A
GLN
129
A
GLN
110
HELX_P
A
TYR
146
A
TYR
127
1
7
18
A
LEU
151
A
LEU
132
HELX_P
A
ARG
180
A
ARG
161
1
8
30
A
LEU
182
A
LEU
163
HELX_P
A
TYR
197
A
TYR
178
1
9
16
A
TRP
202
A
TRP
183
HELX_P
A
GLN
220
A
GLN
201
1
10
19
A
VAL
222
A
VAL
203
HELX_P
A
ALA
224
A
ALA
205
5
11
3
A
ARG
225
A
ARG
206
HELX_P
A
PHE
244
A
PHE
225
1
12
20
A
PRO
248
A
PRO
229
HELX_P
A
GLY
269
A
GLY
250
1
13
22
A
GLY
276
A
GLY
257
HELX_P
A
ASN
280
A
ASN
261
5
14
5
MEMBRANE PROTEIN
outer membrane, MEMBRANE PROTEIN
D0MFQ0_RHOM4
UNP
1
24
D0MFQ0
AGSGRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI
DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELY
EAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQR
LTELEGDASLAQGQRQN
24
280
3QKY
24
280
D0MFQ0
A
1
5
261
1
expression tag
GLY
20
3QKY
A
D0MFQ0
UNP
1
1
expression tag
HIS
21
3QKY
A
D0MFQ0
UNP
2
1
expression tag
MET
22
3QKY
A
D0MFQ0
UNP
3
1
expression tag
ALA
23
3QKY
A
D0MFQ0
UNP
4
146
H 3