0.014661
0.000000
0.000000
0.000000
0.009044
0.000000
0.000000
0.000000
0.008270
0.00000
0.00000
0.00000
Russo Krauss, I.
Merlino, A.
Mazzarella, L.
Sica, F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
68.208
110.574
120.916
C21 H34 Cl N6 O3 1
453.986
D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide
PPACK
peptide-like
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
K 1
39.098
POTASSIUM ION
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
39
7858
7867
10.1093/nar/gkr522
21715374
Thrombin-aptamer recognition: a revealed ambiguity.
2011
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
mirrors
CCD
2009-04-07
RIGAKU SATURN 944+
GRAPHITE
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU MICROMAX-007 HF
29780.219
Thrombin heavy chain
3.4.21.5
1
man
polymer
4096.534
Thrombin light chain
3.4.21.5
1
man
polymer
4743.051
modified thrombin binding DNA aptamer
1
syn
polymer
453.986
D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide
1
syn
non-polymer
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
non-polymer
22.990
SODIUM ION
1
syn
non-polymer
39.098
POTASSIUM ION
1
syn
non-polymer
18.015
water
251
nat
water
no
no
IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM
LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL
QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY
THVFRLKKWIQKVIDQFGE
IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM
LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL
QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY
THVFRLKKWIQKVIDQFGE
H
polypeptide(L)
no
no
TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR
TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR
L
polypeptide(L)
no
no
(DG)(DG)(DT)(DT)(DG)(DG)(DT)(DG)(DT)(DG)(DG)(DT)(DT)(DG)(DG)
GGTTGGTGTGGTTGG
D
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
F2
9606
Homo sapiens
562
Escherichia coli
human
sample
F2
9606
Homo sapiens
562
Escherichia coli
1
2.95
58.33
VAPOR DIFFUSION, SITTING DROP
5.8
20% w/v PEG 20000, 0.2M ammonium sulfate, 3% n-propanol, 0.1 M sodium acetate pH 5.8, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
-3.254
3
6
D
1
D
15
88.529
D_DG1:DG15_D
1
11.069
-1.713
0.262
-3.373
21.319
3
6
D
6
D
10
-85.218
D_DG6:DG10_D
2
-7.444
1.939
-0.657
3.301
1.438
3
6
D
14
D
11
-93.283
D_DG14:DG11_D
3
-16.173
1.683
0.001
3.116
-0.112
179.360
D
D
1
6
-0.706
D
D
15
10
-0.112
-1.412
-1.769
-3.294
DD_DG1DG6:DG10DG15_DD
1
4.948
-2.474
179.359
-1.647
0.885
-0.324
178.267
D
D
6
14
-26.196
D
D
10
11
0.589
-52.067
-1.463
-2.652
DD_DG6DG14:DG11DG10_DD
2
170.315
-85.691
48.889
-1.301
0.813
chem_comp
entity
pdbx_chem_comp_identifier
pdbx_entity_nonpoly
pdbx_struct_conn_angle
pdbx_unobs_or_zero_occ_atoms
pdbx_validate_polymer_linkage
struct_conn
struct_site
struct_site_gen
repository
Initial release
Carbohydrate remediation
repository
Remediation
Other
Advisory
Data collection
Derived calculations
Structure summary
1
0
2011-10-19
1
1
2013-02-27
1
2
2020-07-29
_chem_comp.name
_chem_comp.type
_entity.pdbx_description
_pdbx_entity_nonpoly.name
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_role
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
RCSB
Y
PDBJ
2011-02-03
REL
REL
0G6
D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose
NA
SODIUM ION
K
POTASSIUM ION
HOH
water
BECAUSE OF THE PRESENCE OF THE POLARITY INVERSION SITE IN MTBA, SOME RESIDUE HAVE UNUSUAL LINKAGES. IN PARTICULAR RESIDUE D DG 2 IS LINKED TO THE P ATOM OF RESIDUE D DG 1 BY ITS O3' ATOM, AND RESIDUE D DT 3 IS LINKED TO RESIDUE D DT 4 BY ITS O5' ATOM. THE PHOSPHATE GROUP OF RESIDUE D DT 3 IS MISSING DUE TO THE 5'-3' INVERSION OF THIS STRAND.
Inhibitor
D-Phe-Pro-Arg-CH2Cl
Peptide-like
0G6
1
4
0G6
0G6
1
H
NAG
1
5
NAG
NAG
248
H
NA
601
6
NA
NA
601
H
K
602
7
K
K
602
D
HOH
1018
8
HOH
HOH
1018
H
HOH
1019
8
HOH
HOH
1019
H
HOH
1020
8
HOH
HOH
1020
H
HOH
1021
8
HOH
HOH
1021
H
HOH
1023
8
HOH
HOH
1023
H
HOH
1024
8
HOH
HOH
1024
H
HOH
1025
8
HOH
HOH
1025
H
HOH
1026
8
HOH
HOH
1026
H
HOH
1027
8
HOH
HOH
1027
H
HOH
1028
8
HOH
HOH
1028
H
HOH
1029
8
HOH
HOH
1029
H
HOH
1031
8
HOH
HOH
1031
H
HOH
1032
8
HOH
HOH
1032
H
HOH
1034
8
HOH
HOH
1034
H
HOH
1038
8
HOH
HOH
1038
H
HOH
1039
8
HOH
HOH
1039
H
HOH
1040
8
HOH
HOH
1040
H
HOH
1042
8
HOH
HOH
1042
H
HOH
1043
8
HOH
HOH
1043
H
HOH
1044
8
HOH
HOH
1044
H
HOH
1045
8
HOH
HOH
1045
H
HOH
1046
8
HOH
HOH
1046
H
HOH
1047
8
HOH
HOH
1047
H
HOH
1048
8
HOH
HOH
1048
H
HOH
1049
8
HOH
HOH
1049
H
HOH
1050
8
HOH
HOH
1050
H
HOH
1053
8
HOH
HOH
1053
H
HOH
1054
8
HOH
HOH
1054
H
HOH
1055
8
HOH
HOH
1055
H
HOH
1056
8
HOH
HOH
1056
H
HOH
1057
8
HOH
HOH
1057
H
HOH
1061
8
HOH
HOH
1061
H
HOH
1063
8
HOH
HOH
1063
H
HOH
1064
8
HOH
HOH
1064
H
HOH
1066
8
HOH
HOH
1066
H
HOH
1068
8
HOH
HOH
1068
H
HOH
1069
8
HOH
HOH
1069
H
HOH
1070
8
HOH
HOH
1070
H
HOH
1071
8
HOH
HOH
1071
H
HOH
1073
8
HOH
HOH
1073
H
HOH
1075
8
HOH
HOH
1075
H
HOH
1076
8
HOH
HOH
1076
H
HOH
1077
8
HOH
HOH
1077
H
HOH
1078
8
HOH
HOH
1078
H
HOH
1079
8
HOH
HOH
1079
H
HOH
1080
8
HOH
HOH
1080
H
HOH
1081
8
HOH
HOH
1081
H
HOH
1082
8
HOH
HOH
1082
H
HOH
1083
8
HOH
HOH
1083
H
HOH
1084
8
HOH
HOH
1084
H
HOH
1085
8
HOH
HOH
1085
H
HOH
1086
8
HOH
HOH
1086
H
HOH
1089
8
HOH
HOH
1089
H
HOH
1090
8
HOH
HOH
1090
H
HOH
1092
8
HOH
HOH
1092
H
HOH
1094
8
HOH
HOH
1094
H
HOH
1095
8
HOH
HOH
1095
H
HOH
1096
8
HOH
HOH
1096
H
HOH
1097
8
HOH
HOH
1097
H
HOH
1098
8
HOH
HOH
1098
H
HOH
1099
8
HOH
HOH
1099
H
HOH
1101
8
HOH
HOH
1101
H
HOH
1102
8
HOH
HOH
1102
H
HOH
1103
8
HOH
HOH
1103
H
HOH
1104
8
HOH
HOH
1104
H
HOH
1105
8
HOH
HOH
1105
H
HOH
1106
8
HOH
HOH
1106
H
HOH
1107
8
HOH
HOH
1107
H
HOH
1108
8
HOH
HOH
1108
H
HOH
1109
8
HOH
HOH
1109
H
HOH
1110
8
HOH
HOH
1110
H
HOH
1111
8
HOH
HOH
1111
H
HOH
1112
8
HOH
HOH
1112
H
HOH
1113
8
HOH
HOH
1113
H
HOH
1114
8
HOH
HOH
1114
H
HOH
1115
8
HOH
HOH
1115
H
HOH
1116
8
HOH
HOH
1116
H
HOH
1117
8
HOH
HOH
1117
H
HOH
1118
8
HOH
HOH
1118
H
HOH
1119
8
HOH
HOH
1119
H
HOH
1120
8
HOH
HOH
1120
H
HOH
1121
8
HOH
HOH
1121
H
HOH
1122
8
HOH
HOH
1122
H
HOH
1123
8
HOH
HOH
1123
H
HOH
1124
8
HOH
HOH
1124
H
HOH
1125
8
HOH
HOH
1125
H
HOH
1127
8
HOH
HOH
1127
H
HOH
1128
8
HOH
HOH
1128
H
HOH
1129
8
HOH
HOH
1129
H
HOH
1130
8
HOH
HOH
1130
H
HOH
1131
8
HOH
HOH
1131
H
HOH
1133
8
HOH
HOH
1133
H
HOH
1134
8
HOH
HOH
1134
H
HOH
1137
8
HOH
HOH
1137
H
HOH
1138
8
HOH
HOH
1138
H
HOH
1140
8
HOH
HOH
1140
H
HOH
1141
8
HOH
HOH
1141
H
HOH
1142
8
HOH
HOH
1142
H
HOH
1143
8
HOH
HOH
1143
H
HOH
1146
8
HOH
HOH
1146
H
HOH
1147
8
HOH
HOH
1147
H
HOH
1148
8
HOH
HOH
1148
H
HOH
1149
8
HOH
HOH
1149
H
HOH
1150
8
HOH
HOH
1150
H
HOH
1151
8
HOH
HOH
1151
H
HOH
1152
8
HOH
HOH
1152
H
HOH
1153
8
HOH
HOH
1153
H
HOH
1154
8
HOH
HOH
1154
H
HOH
1156
8
HOH
HOH
1156
H
HOH
1157
8
HOH
HOH
1157
H
HOH
1158
8
HOH
HOH
1158
H
HOH
1161
8
HOH
HOH
1161
H
HOH
1162
8
HOH
HOH
1162
H
HOH
1163
8
HOH
HOH
1163
H
HOH
1164
8
HOH
HOH
1164
H
HOH
1166
8
HOH
HOH
1166
H
HOH
1170
8
HOH
HOH
1170
H
HOH
1171
8
HOH
HOH
1171
H
HOH
1173
8
HOH
HOH
1173
H
HOH
1176
8
HOH
HOH
1176
H
HOH
1178
8
HOH
HOH
1178
H
HOH
1181
8
HOH
HOH
1181
H
HOH
1182
8
HOH
HOH
1182
H
HOH
1183
8
HOH
HOH
1183
H
HOH
1184
8
HOH
HOH
1184
H
HOH
1185
8
HOH
HOH
1185
H
HOH
1187
8
HOH
HOH
1187
H
HOH
1189
8
HOH
HOH
1189
H
HOH
1192
8
HOH
HOH
1192
H
HOH
1193
8
HOH
HOH
1193
H
HOH
1194
8
HOH
HOH
1194
H
HOH
1195
8
HOH
HOH
1195
H
HOH
1196
8
HOH
HOH
1196
H
HOH
1198
8
HOH
HOH
1198
H
HOH
1199
8
HOH
HOH
1199
H
HOH
1201
8
HOH
HOH
1201
H
HOH
1202
8
HOH
HOH
1202
H
HOH
1204
8
HOH
HOH
1204
H
HOH
1205
8
HOH
HOH
1205
H
HOH
1207
8
HOH
HOH
1207
H
HOH
1208
8
HOH
HOH
1208
H
HOH
1209
8
HOH
HOH
1209
H
HOH
1211
8
HOH
HOH
1211
H
HOH
1213
8
HOH
HOH
1213
H
HOH
1214
8
HOH
HOH
1214
H
HOH
1215
8
HOH
HOH
1215
H
HOH
1216
8
HOH
HOH
1216
H
HOH
1218
8
HOH
HOH
1218
H
HOH
1219
8
HOH
HOH
1219
H
HOH
1221
8
HOH
HOH
1221
H
HOH
1222
8
HOH
HOH
1222
H
HOH
1224
8
HOH
HOH
1224
H
HOH
1227
8
HOH
HOH
1227
H
HOH
1228
8
HOH
HOH
1228
H
HOH
1229
8
HOH
HOH
1229
H
HOH
1230
8
HOH
HOH
1230
H
HOH
1232
8
HOH
HOH
1232
H
HOH
1233
8
HOH
HOH
1233
H
HOH
1234
8
HOH
HOH
1234
H
HOH
1235
8
HOH
HOH
1235
H
HOH
1236
8
HOH
HOH
1236
H
HOH
1237
8
HOH
HOH
1237
H
HOH
1238
8
HOH
HOH
1238
H
HOH
1240
8
HOH
HOH
1240
H
HOH
1241
8
HOH
HOH
1241
H
HOH
1242
8
HOH
HOH
1242
H
HOH
1243
8
HOH
HOH
1243
H
HOH
1244
8
HOH
HOH
1244
H
HOH
1245
8
HOH
HOH
1245
H
HOH
1247
8
HOH
HOH
1247
H
HOH
1248
8
HOH
HOH
1248
H
HOH
1249
8
HOH
HOH
1249
H
HOH
1251
8
HOH
HOH
1251
H
HOH
1252
8
HOH
HOH
1252
H
HOH
1253
8
HOH
HOH
1253
H
HOH
1254
8
HOH
HOH
1254
H
HOH
1255
8
HOH
HOH
1255
H
HOH
1256
8
HOH
HOH
1256
H
HOH
1258
8
HOH
HOH
1258
H
HOH
1259
8
HOH
HOH
1259
H
HOH
1033
8
HOH
HOH
1033
L
HOH
1035
8
HOH
HOH
1035
L
HOH
1051
8
HOH
HOH
1051
L
HOH
1060
8
HOH
HOH
1060
L
HOH
1087
8
HOH
HOH
1087
L
HOH
1091
8
HOH
HOH
1091
L
HOH
1144
8
HOH
HOH
1144
L
HOH
1155
8
HOH
HOH
1155
L
HOH
1159
8
HOH
HOH
1159
L
HOH
1160
8
HOH
HOH
1160
L
HOH
1167
8
HOH
HOH
1167
L
HOH
1169
8
HOH
HOH
1169
L
HOH
1172
8
HOH
HOH
1172
L
HOH
1175
8
HOH
HOH
1175
L
HOH
1186
8
HOH
HOH
1186
L
HOH
1190
8
HOH
HOH
1190
L
HOH
1191
8
HOH
HOH
1191
L
HOH
1197
8
HOH
HOH
1197
L
HOH
1200
8
HOH
HOH
1200
L
HOH
1206
8
HOH
HOH
1206
L
HOH
1217
8
HOH
HOH
1217
L
HOH
1225
8
HOH
HOH
1225
L
HOH
1226
8
HOH
HOH
1226
L
HOH
1239
8
HOH
HOH
1239
L
HOH
1260
8
HOH
HOH
1260
L
HOH
1262
8
HOH
HOH
1262
L
HOH
1022
8
HOH
HOH
1022
D
HOH
1030
8
HOH
HOH
1030
D
HOH
1036
8
HOH
HOH
1036
D
HOH
1037
8
HOH
HOH
1037
D
HOH
1041
8
HOH
HOH
1041
D
HOH
1052
8
HOH
HOH
1052
D
HOH
1058
8
HOH
HOH
1058
D
HOH
1059
8
HOH
HOH
1059
D
HOH
1062
8
HOH
HOH
1062
D
HOH
1065
8
HOH
HOH
1065
D
HOH
1067
8
HOH
HOH
1067
D
HOH
1072
8
HOH
HOH
1072
D
HOH
1074
8
HOH
HOH
1074
D
HOH
1088
8
HOH
HOH
1088
D
HOH
1093
8
HOH
HOH
1093
D
HOH
1100
8
HOH
HOH
1100
D
HOH
1126
8
HOH
HOH
1126
D
HOH
1132
8
HOH
HOH
1132
D
HOH
1135
8
HOH
HOH
1135
D
HOH
1136
8
HOH
HOH
1136
D
HOH
1139
8
HOH
HOH
1139
D
HOH
1145
8
HOH
HOH
1145
D
HOH
1165
8
HOH
HOH
1165
D
HOH
1168
8
HOH
HOH
1168
D
HOH
1174
8
HOH
HOH
1174
D
HOH
1177
8
HOH
HOH
1177
D
HOH
1179
8
HOH
HOH
1179
D
HOH
1180
8
HOH
HOH
1180
D
HOH
1188
8
HOH
HOH
1188
D
HOH
1203
8
HOH
HOH
1203
D
HOH
1210
8
HOH
HOH
1210
D
HOH
1212
8
HOH
HOH
1212
D
HOH
1220
8
HOH
HOH
1220
D
HOH
1223
8
HOH
HOH
1223
D
HOH
1231
8
HOH
HOH
1231
D
HOH
1246
8
HOH
HOH
1246
D
HOH
1250
8
HOH
HOH
1250
D
HOH
1257
8
HOH
HOH
1257
D
HOH
1261
8
HOH
HOH
1261
D
HOH
1264
8
HOH
HOH
1264
D
HOH
1265
8
HOH
HOH
1265
D
HOH
1266
8
HOH
HOH
1266
D
HOH
1267
8
HOH
HOH
1267
D
HOH
1268
8
HOH
HOH
1268
D
HOH
1269
8
HOH
HOH
1269
D
ILE
16
n
1
ILE
16
H
VAL
17
n
2
VAL
17
H
GLU
18
n
3
GLU
18
H
GLY
19
n
4
GLY
19
H
SER
20
n
5
SER
20
H
ASP
21
n
6
ASP
21
H
ALA
22
n
7
ALA
22
H
GLU
23
n
8
GLU
23
H
ILE
24
n
9
ILE
24
H
GLY
25
n
10
GLY
25
H
MET
26
n
11
MET
26
H
SER
27
n
12
SER
27
H
PRO
28
n
13
PRO
28
H
TRP
29
n
14
TRP
29
H
GLN
30
n
15
GLN
30
H
VAL
31
n
16
VAL
31
H
MET
32
n
17
MET
32
H
LEU
33
n
18
LEU
33
H
PHE
34
n
19
PHE
34
H
ARG
35
n
20
ARG
35
H
LYS
36
n
21
LYS
36
H
SER
36
n
22
A
SER
36
H
PRO
37
n
23
PRO
37
H
GLN
38
n
24
GLN
38
H
GLU
39
n
25
GLU
39
H
LEU
40
n
26
LEU
40
H
LEU
41
n
27
LEU
41
H
CYS
42
n
28
CYS
42
H
GLY
43
n
29
GLY
43
H
ALA
44
n
30
ALA
44
H
SER
45
n
31
SER
45
H
LEU
46
n
32
LEU
46
H
ILE
47
n
33
ILE
47
H
SER
48
n
34
SER
48
H
ASP
49
n
35
ASP
49
H
ARG
50
n
36
ARG
50
H
TRP
51
n
37
TRP
51
H
VAL
52
n
38
VAL
52
H
LEU
53
n
39
LEU
53
H
THR
54
n
40
THR
54
H
ALA
55
n
41
ALA
55
H
ALA
56
n
42
ALA
56
H
HIS
57
n
43
HIS
57
H
CYS
58
n
44
CYS
58
H
LEU
59
n
45
LEU
59
H
LEU
60
n
46
LEU
60
H
TYR
60
n
47
A
TYR
60
H
PRO
60
n
48
B
PRO
60
H
PRO
60
n
49
C
PRO
60
H
TRP
60
n
50
D
TRP
60
H
ASP
60
n
51
E
ASP
60
H
LYS
60
n
52
F
LYS
60
H
ASN
60
n
53
G
ASN
60
H
PHE
60
n
54
H
PHE
60
H
THR
60
n
55
I
THR
60
H
GLU
61
n
56
GLU
61
H
ASN
62
n
57
ASN
62
H
ASP
63
n
58
ASP
63
H
LEU
64
n
59
LEU
64
H
LEU
65
n
60
LEU
65
H
VAL
66
n
61
VAL
66
H
ARG
67
n
62
ARG
67
H
ILE
68
n
63
ILE
68
H
GLY
69
n
64
GLY
69
H
LYS
70
n
65
LYS
70
H
HIS
71
n
66
HIS
71
H
SER
72
n
67
SER
72
H
ARG
73
n
68
ARG
73
H
THR
74
n
69
THR
74
H
ARG
75
n
70
ARG
75
H
TYR
76
n
71
TYR
76
H
GLU
77
n
72
GLU
77
H
ARG
77
n
73
A
ARG
77
H
ASN
78
n
74
ASN
78
H
ILE
79
n
75
ILE
79
H
GLU
80
n
76
GLU
80
H
LYS
81
n
77
LYS
81
H
ILE
82
n
78
ILE
82
H
SER
83
n
79
SER
83
H
MET
84
n
80
MET
84
H
LEU
85
n
81
LEU
85
H
GLU
86
n
82
GLU
86
H
LYS
87
n
83
LYS
87
H
ILE
88
n
84
ILE
88
H
TYR
89
n
85
TYR
89
H
ILE
90
n
86
ILE
90
H
HIS
91
n
87
HIS
91
H
PRO
92
n
88
PRO
92
H
ARG
93
n
89
ARG
93
H
TYR
94
n
90
TYR
94
H
ASN
95
n
91
ASN
95
H
TRP
96
n
92
TRP
96
H
ARG
97
n
93
ARG
97
H
GLU
97
n
94
A
GLU
97
H
ASN
98
n
95
ASN
98
H
LEU
99
n
96
LEU
99
H
ASP
100
n
97
ASP
100
H
ARG
101
n
98
ARG
101
H
ASP
102
n
99
ASP
102
H
ILE
103
n
100
ILE
103
H
ALA
104
n
101
ALA
104
H
LEU
105
n
102
LEU
105
H
MET
106
n
103
MET
106
H
LYS
107
n
104
LYS
107
H
LEU
108
n
105
LEU
108
H
LYS
109
n
106
LYS
109
H
LYS
110
n
107
LYS
110
H
PRO
111
n
108
PRO
111
H
VAL
112
n
109
VAL
112
H
ALA
113
n
110
ALA
113
H
PHE
114
n
111
PHE
114
H
SER
115
n
112
SER
115
H
ASP
116
n
113
ASP
116
H
TYR
117
n
114
TYR
117
H
ILE
118
n
115
ILE
118
H
HIS
119
n
116
HIS
119
H
PRO
120
n
117
PRO
120
H
VAL
121
n
118
VAL
121
H
CYS
122
n
119
CYS
122
H
LEU
123
n
120
LEU
123
H
PRO
124
n
121
PRO
124
H
ASP
125
n
122
ASP
125
H
ARG
126
n
123
ARG
126
H
GLU
127
n
124
GLU
127
H
THR
128
n
125
THR
128
H
ALA
129
n
126
ALA
129
H
ALA
129
n
127
A
ALA
129
H
SER
129
n
128
B
SER
129
H
LEU
129
n
129
C
LEU
129
H
LEU
130
n
130
LEU
130
H
GLN
131
n
131
GLN
131
H
ALA
132
n
132
ALA
132
H
GLY
133
n
133
GLY
133
H
TYR
134
n
134
TYR
134
H
LYS
135
n
135
LYS
135
H
GLY
136
n
136
GLY
136
H
ARG
137
n
137
ARG
137
H
VAL
138
n
138
VAL
138
H
THR
139
n
139
THR
139
H
GLY
140
n
140
GLY
140
H
TRP
141
n
141
TRP
141
H
GLY
142
n
142
GLY
142
H
ASN
143
n
143
ASN
143
H
LEU
144
n
144
LEU
144
H
LYS
145
n
145
LYS
145
H
GLU
146
n
146
GLU
146
H
THR
147
n
147
THR
147
H
TRP
148
n
148
TRP
148
H
THR
149
n
149
THR
149
H
ALA
149
n
150
A
ALA
149
H
ASN
149
n
151
B
ASN
149
H
VAL
149
n
152
C
VAL
149
H
GLY
149
n
153
D
GLY
149
H
LYS
149
n
154
E
LYS
149
H
GLY
150
n
155
GLY
150
H
GLN
151
n
156
GLN
151
H
PRO
152
n
157
PRO
152
H
SER
153
n
158
SER
153
H
VAL
154
n
159
VAL
154
H
LEU
155
n
160
LEU
155
H
GLN
156
n
161
GLN
156
H
VAL
157
n
162
VAL
157
H
VAL
158
n
163
VAL
158
H
ASN
159
n
164
ASN
159
H
LEU
160
n
165
LEU
160
H
PRO
161
n
166
PRO
161
H
ILE
162
n
167
ILE
162
H
VAL
163
n
168
VAL
163
H
GLU
164
n
169
GLU
164
H
ARG
165
n
170
ARG
165
H
PRO
166
n
171
PRO
166
H
VAL
167
n
172
VAL
167
H
CYS
168
n
173
CYS
168
H
LYS
169
n
174
LYS
169
H
ASP
170
n
175
ASP
170
H
SER
171
n
176
SER
171
H
THR
172
n
177
THR
172
H
ARG
173
n
178
ARG
173
H
ILE
174
n
179
ILE
174
H
ARG
175
n
180
ARG
175
H
ILE
176
n
181
ILE
176
H
THR
177
n
182
THR
177
H
ASP
178
n
183
ASP
178
H
ASN
179
n
184
ASN
179
H
MET
180
n
185
MET
180
H
PHE
181
n
186
PHE
181
H
CYS
182
n
187
CYS
182
H
ALA
183
n
188
ALA
183
H
GLY
184
n
189
GLY
184
H
TYR
184
n
190
A
TYR
184
H
LYS
185
n
191
LYS
185
H
PRO
186
n
192
PRO
186
H
ASP
186
n
193
A
ASP
186
H
GLU
186
n
194
B
GLU
186
H
GLY
186
n
195
C
GLY
186
H
LYS
186
n
196
D
LYS
186
H
ARG
187
n
197
ARG
187
H
GLY
188
n
198
GLY
188
H
ASP
189
n
199
ASP
189
H
ALA
190
n
200
ALA
190
H
CYS
191
n
201
CYS
191
H
GLU
192
n
202
GLU
192
H
GLY
193
n
203
GLY
193
H
ASP
194
n
204
ASP
194
H
SER
195
n
205
SER
195
H
GLY
196
n
206
GLY
196
H
GLY
197
n
207
GLY
197
H
PRO
198
n
208
PRO
198
H
PHE
199
n
209
PHE
199
H
VAL
200
n
210
VAL
200
H
MET
201
n
211
MET
201
H
LYS
202
n
212
LYS
202
H
SER
203
n
213
SER
203
H
PRO
204
n
214
PRO
204
H
PHE
204
n
215
A
PHE
204
H
ASN
204
n
216
B
ASN
204
H
ASN
205
n
217
ASN
205
H
ARG
206
n
218
ARG
206
H
TRP
207
n
219
TRP
207
H
TYR
208
n
220
TYR
208
H
GLN
209
n
221
GLN
209
H
MET
210
n
222
MET
210
H
GLY
211
n
223
GLY
211
H
ILE
212
n
224
ILE
212
H
VAL
213
n
225
VAL
213
H
SER
214
n
226
SER
214
H
TRP
215
n
227
TRP
215
H
GLY
216
n
228
GLY
216
H
GLU
217
n
229
GLU
217
H
GLY
219
n
230
GLY
219
H
CYS
220
n
231
CYS
220
H
ASP
221
n
232
A
ASP
221
H
ARG
221
n
233
ARG
221
H
ASP
222
n
234
ASP
222
H
GLY
223
n
235
GLY
223
H
LYS
224
n
236
LYS
224
H
TYR
225
n
237
TYR
225
H
GLY
226
n
238
GLY
226
H
PHE
227
n
239
PHE
227
H
TYR
228
n
240
TYR
228
H
THR
229
n
241
THR
229
H
HIS
230
n
242
HIS
230
H
VAL
231
n
243
VAL
231
H
PHE
232
n
244
PHE
232
H
ARG
233
n
245
ARG
233
H
LEU
234
n
246
LEU
234
H
LYS
235
n
247
LYS
235
H
LYS
236
n
248
LYS
236
H
TRP
237
n
249
TRP
237
H
ILE
238
n
250
ILE
238
H
GLN
239
n
251
GLN
239
H
LYS
240
n
252
LYS
240
H
VAL
241
n
253
VAL
241
H
ILE
242
n
254
ILE
242
H
ASP
243
n
255
ASP
243
H
GLN
244
n
256
GLN
244
H
PHE
245
n
257
PHE
245
H
GLY
246
n
258
GLY
246
H
GLU
247
n
259
GLU
247
H
THR
1
n
1
H
THR
1
L
PHE
1
n
2
G
PHE
1
L
GLY
1
n
3
F
GLY
1
L
SER
1
n
4
E
SER
1
L
GLY
1
n
5
D
GLY
1
L
GLU
1
n
6
C
GLU
1
L
ALA
1
n
7
B
ALA
1
L
ASP
1
n
8
A
ASP
1
L
CYS
1
n
9
CYS
1
L
GLY
2
n
10
GLY
2
L
LEU
3
n
11
LEU
3
L
ARG
4
n
12
ARG
4
L
PRO
5
n
13
PRO
5
L
LEU
6
n
14
LEU
6
L
PHE
7
n
15
PHE
7
L
GLU
8
n
16
GLU
8
L
LYS
9
n
17
LYS
9
L
LYS
10
n
18
LYS
10
L
SER
11
n
19
SER
11
L
LEU
12
n
20
LEU
12
L
GLU
13
n
21
GLU
13
L
ASP
14
n
22
ASP
14
L
LYS
14
n
23
A
LYS
14
L
THR
14
n
24
B
THR
14
L
GLU
14
n
25
C
GLU
14
L
ARG
14
n
26
D
ARG
14
L
GLU
14
n
27
E
GLU
14
L
LEU
14
n
28
F
LEU
14
L
LEU
14
n
29
G
LEU
14
L
GLU
14
n
30
H
GLU
14
L
SER
14
n
31
I
SER
14
L
TYR
14
n
32
J
TYR
14
L
ILE
14
n
33
K
ILE
14
L
ASP
14
n
34
L
ASP
14
L
n
35
15
L
n
36
16
L
DG
1
n
1
DG
1
D
DG
2
n
2
DG
2
D
DT
3
n
3
DT
3
D
DT
4
n
4
DT
4
D
DG
5
n
5
DG
5
D
DG
6
n
6
DG
6
D
DT
7
n
7
DT
7
D
DG
8
n
8
DG
8
D
DT
9
n
9
DT
9
D
DG
10
n
10
DG
10
D
DG
11
n
11
DG
11
D
DT
12
n
12
DT
12
D
DT
13
n
13
DT
13
D
DG
14
n
14
DG
14
D
DG
15
n
15
DG
15
D
author_and_software_defined_assembly
PISA
3
trimeric
4120
-15
14920
H
ARG
221
A
O
ARG
233
1_555
H
NA
601
F
NA
NA
1_555
H
LYS
224
A
O
LYS
236
1_555
86.7
H
ARG
221
A
O
ARG
233
1_555
H
NA
601
F
NA
NA
1_555
H
HOH
1042
H
O
HOH
1_555
147.1
H
LYS
224
A
O
LYS
236
1_555
H
NA
601
F
NA
NA
1_555
H
HOH
1042
H
O
HOH
1_555
63.1
H
ARG
221
A
O
ARG
233
1_555
H
NA
601
F
NA
NA
1_555
H
HOH
1053
H
O
HOH
1_555
88.6
H
LYS
224
A
O
LYS
236
1_555
H
NA
601
F
NA
NA
1_555
H
HOH
1053
H
O
HOH
1_555
85.1
H
HOH
1042
H
O
HOH
1_555
H
NA
601
F
NA
NA
1_555
H
HOH
1053
H
O
HOH
1_555
76.8
H
ARG
221
A
O
ARG
233
1_555
H
NA
601
F
NA
NA
1_555
H
HOH
1085
H
O
HOH
1_555
121.2
H
LYS
224
A
O
LYS
236
1_555
H
NA
601
F
NA
NA
1_555
H
HOH
1085
H
O
HOH
1_555
149.4
H
HOH
1042
H
O
HOH
1_555
H
NA
601
F
NA
NA
1_555
H
HOH
1085
H
O
HOH
1_555
86.7
H
HOH
1053
H
O
HOH
1_555
H
NA
601
F
NA
NA
1_555
H
HOH
1085
H
O
HOH
1_555
83.3
H
ARG
221
A
O
ARG
233
1_555
H
NA
601
F
NA
NA
1_555
H
HOH
1232
H
O
HOH
1_555
102.0
H
LYS
224
A
O
LYS
236
1_555
H
NA
601
F
NA
NA
1_555
H
HOH
1232
H
O
HOH
1_555
79.9
H
HOH
1042
H
O
HOH
1_555
H
NA
601
F
NA
NA
1_555
H
HOH
1232
H
O
HOH
1_555
86.0
H
HOH
1053
H
O
HOH
1_555
H
NA
601
F
NA
NA
1_555
H
HOH
1232
H
O
HOH
1_555
161.0
H
HOH
1085
H
O
HOH
1_555
H
NA
601
F
NA
NA
1_555
H
HOH
1232
H
O
HOH
1_555
103.9
D
DG
1
C
O6
DG
1
1_555
D
K
602
G
K
K
1_555
D
DG
2
C
O6
DG
2
1_555
70.9
D
DG
1
C
O6
DG
1
1_555
D
K
602
G
K
K
1_555
D
DG
5
C
O6
DG
5
1_555
120.0
D
DG
2
C
O6
DG
2
1_555
D
K
602
G
K
K
1_555
D
DG
5
C
O6
DG
5
1_555
69.2
D
DG
1
C
O6
DG
1
1_555
D
K
602
G
K
K
1_555
D
DG
6
C
O6
DG
6
1_555
69.4
D
DG
2
C
O6
DG
2
1_555
D
K
602
G
K
K
1_555
D
DG
6
C
O6
DG
6
1_555
91.0
D
DG
5
C
O6
DG
5
1_555
D
K
602
G
K
K
1_555
D
DG
6
C
O6
DG
6
1_555
68.6
D
DG
1
C
O6
DG
1
1_555
D
K
602
G
K
K
1_555
D
DG
10
C
O6
DG
10
1_555
112.5
D
DG
2
C
O6
DG
2
1_555
D
K
602
G
K
K
1_555
D
DG
10
C
O6
DG
10
1_555
165.7
D
DG
5
C
O6
DG
5
1_555
D
K
602
G
K
K
1_555
D
DG
10
C
O6
DG
10
1_555
98.1
D
DG
6
C
O6
DG
6
1_555
D
K
602
G
K
K
1_555
D
DG
10
C
O6
DG
10
1_555
77.8
D
DG
1
C
O6
DG
1
1_555
D
K
602
G
K
K
1_555
D
DG
11
C
O6
DG
11
1_555
166.6
D
DG
2
C
O6
DG
2
1_555
D
K
602
G
K
K
1_555
D
DG
11
C
O6
DG
11
1_555
114.2
D
DG
5
C
O6
DG
5
1_555
D
K
602
G
K
K
1_555
D
DG
11
C
O6
DG
11
1_555
73.0
D
DG
6
C
O6
DG
6
1_555
D
K
602
G
K
K
1_555
D
DG
11
C
O6
DG
11
1_555
121.6
D
DG
10
C
O6
DG
10
1_555
D
K
602
G
K
K
1_555
D
DG
11
C
O6
DG
11
1_555
65.9
D
DG
1
C
O6
DG
1
1_555
D
K
602
G
K
K
1_555
D
DG
14
C
O6
DG
14
1_555
103.8
D
DG
2
C
O6
DG
2
1_555
D
K
602
G
K
K
1_555
D
DG
14
C
O6
DG
14
1_555
69.6
D
DG
5
C
O6
DG
5
1_555
D
K
602
G
K
K
1_555
D
DG
14
C
O6
DG
14
1_555
102.0
D
DG
6
C
O6
DG
6
1_555
D
K
602
G
K
K
1_555
D
DG
14
C
O6
DG
14
1_555
160.6
D
DG
10
C
O6
DG
10
1_555
D
K
602
G
K
K
1_555
D
DG
14
C
O6
DG
14
1_555
121.1
D
DG
11
C
O6
DG
11
1_555
D
K
602
G
K
K
1_555
D
DG
14
C
O6
DG
14
1_555
68.3
D
DG
1
C
O6
DG
1
1_555
D
K
602
G
K
K
1_555
D
DG
15
C
O6
DG
15
1_555
70.6
D
DG
2
C
O6
DG
2
1_555
D
K
602
G
K
K
1_555
D
DG
15
C
O6
DG
15
1_555
118.2
D
DG
5
C
O6
DG
5
1_555
D
K
602
G
K
K
1_555
D
DG
15
C
O6
DG
15
1_555
169.3
D
DG
6
C
O6
DG
6
1_555
D
K
602
G
K
K
1_555
D
DG
15
C
O6
DG
15
1_555
117.2
D
DG
10
C
O6
DG
10
1_555
D
K
602
G
K
K
1_555
D
DG
15
C
O6
DG
15
1_555
75.4
D
DG
11
C
O6
DG
11
1_555
D
K
602
G
K
K
1_555
D
DG
15
C
O6
DG
15
1_555
96.5
D
DG
14
C
O6
DG
14
1_555
D
K
602
G
K
K
1_555
D
DG
15
C
O6
DG
15
1_555
75.1
G
H
ASN
60
GLYCOSYLATION SITE
A
ASN
53
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
H
N
SER
20
A
N
SER
5
H
O
VAL
157
A
O
VAL
162
H
O
LEU
160
A
O
LEU
165
H
N
GLY
136
A
N
GLY
136
H
N
ARG
137
A
N
ARG
137
H
O
VAL
200
A
O
VAL
210
H
N
MET
201
A
N
MET
211
H
O
TYR
208
A
O
TYR
220
H
N
TRP
215
A
N
TRP
227
H
O
PHE
227
A
O
PHE
239
H
O
TYR
228
A
O
TYR
240
H
N
PHE
181
A
N
PHE
186
H
O
LYS
81
A
O
LYS
77
H
N
ILE
68
A
N
ILE
63
H
O
LEU
65
A
O
LEU
60
H
N
PHE
34
A
N
PHE
19
H
N
ARG
35
A
N
ARG
20
H
O
GLU
39
A
O
GLU
25
H
N
SER
45
A
N
SER
31
H
O
LEU
53
A
O
LEU
39
H
N
VAL
52
A
N
VAL
38
H
O
MET
106
A
O
MET
103
H
O
LYS
107
A
O
LYS
104
H
N
GLU
86
A
N
GLU
82
A
H
N
TYR
60
A
N
TYR
47
F
H
O
LYS
60
A
O
LYS
52
1
D
N1
DT
7
C
N1
DT
7
1
Y
1
D
C2
DT
7
C
C2
DT
7
1
Y
1
D
O2
DT
7
C
O2
DT
7
1
Y
1
D
N3
DT
7
C
N3
DT
7
1
Y
1
D
C4
DT
7
C
C4
DT
7
1
Y
1
D
O4
DT
7
C
O4
DT
7
1
Y
1
D
C5
DT
7
C
C5
DT
7
1
Y
1
D
C7
DT
7
C
C7
DT
7
1
Y
1
D
C6
DT
7
C
C6
DT
7
1
Y
1
L
GLY
15
B
GLY
35
1
Y
1
L
ARG
16
B
ARG
36
1
Y
1
H
H
OG
O2
SER
0G6
195
1
2.09
1
H
H
O
O
GLU
HOH
247
1148
2.16
1
H
H
O
O
HOH
HOH
1156
1173
2.17
1
H
H
O
O
GLU
HOH
247
1183
2.19
1
D
DG
1
0.060
SIDE CHAIN
1
D
DT
12
0.061
SIDE CHAIN
1
D
DT
13
0.072
SIDE CHAIN
1
1.82
0.30
108.30
110.12
D
D
D
O4'
C1'
N9
DG
DG
DG
1
1
1
N
1
7.49
1.20
115.70
123.19
D
D
D
C5'
C4'
C3'
DG
DG
DG
5
5
5
N
1
H
SER
48
-160.50
-167.88
G
1
H
ASN
60
-155.89
84.70
1
H
HIS
71
-130.52
-57.06
1
H
ILE
79
-122.24
-56.34
1
H
ASN
98
-158.49
21.55
1
H
SER
115
-160.95
-166.45
B
1
H
ASN
204
-145.71
16.39
1
H
ASN
205
31.95
42.43
1
L
PHE
7
-128.59
-91.72
0.237
0.183
0.204
0.186
2.14
25.1
945
25096
23642
RANDOM
1
0
MOLECULAR REPLACEMENT
Engh & Huber
2.14
25.1
251
2967
46
306
2364
2.14
25.1
3QLP
25096
23642
0
0
1
93.0
2.14
2.23
1
93.2
data collection
CrystalClear
phasing
AMoRE
refinement
CNS
1.1
data reduction
HKL-2000
data scaling
HKL-2000
Thrombin heavy chain (E.C.3.4.21.5), Thrombin light chain (E.C.3.4.21.5), DNA
X-ray structure of the complex between human alpha thrombin and a modified thrombin binding aptamer (mTBA)
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
7
N
N
8
N
N
8
N
N
8
N
N
H
ALA
55
A
ALA
41
HELX_P
H
CYS
58
A
CYS
44
5
1
4
H
PRO
60
A
PRO
48
HELX_P
H
ASP
60
A
ASP
51
5
2
4
B
E
H
THR
60
A
THR
55
HELX_P
H
ASN
62
A
ASN
57
5
3
3
I
H
ASP
125
A
ASP
122
HELX_P
H
LEU
130
A
LEU
130
1
4
9
H
GLU
164
A
GLU
169
HELX_P
H
SER
171
A
SER
176
1
5
8
H
LYS
185
A
LYS
191
HELX_P
H
GLY
186
A
GLY
195
5
6
5
C
H
LEU
234
A
LEU
246
HELX_P
H
ASP
243
A
ASP
255
1
7
10
L
PHE
7
B
PHE
15
HELX_P
L
SER
11
B
SER
19
5
8
5
L
THR
14
B
THR
24
HELX_P
L
TYR
14
B
TYR
32
1
9
9
B
J
disulf
2.062
H
CYS
42
A
SG
CYS
28
1_555
H
CYS
58
A
SG
CYS
44
1_555
disulf
2.050
H
CYS
122
A
SG
CYS
119
1_555
L
CYS
1
B
SG
CYS
9
1_555
disulf
2.045
H
CYS
168
A
SG
CYS
173
1_555
H
CYS
182
A
SG
CYS
187
1_555
disulf
2.074
H
CYS
191
A
SG
CYS
201
1_555
H
CYS
220
A
SG
CYS
231
1_555
covale
1.473
one
H
0G6
1
D
C3
0G6
1_555
H
HIS
57
A
NE2
HIS
43
1_555
covale
1.436
none
H
0G6
1
D
C2
0G6
1_555
H
SER
195
A
OG
SER
205
1_555
covale
1.449
one
G
N-Glycosylation
H
ASN
60
A
ND2
ASN
53
1_555
H
NAG
248
E
C1
NAG
1_555
covale
1.581
both
D
DG
1
C
P
DG
1
1_555
D
DG
2
C
O3'
DG
2
1_555
covale
1.604
both
D
DG
2
C
P
DG
2
1_555
D
DT
3
C
O3'
DT
3
1_555
covale
1.610
one
D
DT
3
C
O5'
DT
3
1_555
D
DT
4
C
P
DT
4
1_555
metalc
2.301
H
ARG
221
A
O
ARG
233
1_555
H
NA
601
F
NA
NA
1_555
metalc
2.658
H
LYS
224
A
O
LYS
236
1_555
H
NA
601
F
NA
NA
1_555
metalc
2.547
H
NA
601
F
NA
NA
1_555
H
HOH
1042
H
O
HOH
1_555
metalc
3.055
H
NA
601
F
NA
NA
1_555
H
HOH
1053
H
O
HOH
1_555
metalc
2.248
H
NA
601
F
NA
NA
1_555
H
HOH
1085
H
O
HOH
1_555
metalc
2.328
H
NA
601
F
NA
NA
1_555
H
HOH
1232
H
O
HOH
1_555
metalc
2.883
D
DG
1
C
O6
DG
1
1_555
D
K
602
G
K
K
1_555
metalc
2.723
D
DG
2
C
O6
DG
2
1_555
D
K
602
G
K
K
1_555
metalc
2.877
D
DG
5
C
O6
DG
5
1_555
D
K
602
G
K
K
1_555
metalc
2.868
D
DG
6
C
O6
DG
6
1_555
D
K
602
G
K
K
1_555
metalc
2.694
D
DG
10
C
O6
DG
10
1_555
D
K
602
G
K
K
1_555
metalc
2.906
D
DG
11
C
O6
DG
11
1_555
D
K
602
G
K
K
1_555
metalc
2.839
D
DG
14
C
O6
DG
14
1_555
D
K
602
G
K
K
1_555
metalc
2.813
D
DG
15
C
O6
DG
15
1_555
D
K
602
G
K
K
1_555
hydrog
TYPE_6_PAIR
D
DG
1
C
N1
DG
1
1_555
D
DG
6
C
O6
DG
6
1_555
hydrog
TYPE_6_PAIR
D
DG
1
C
N2
DG
1
1_555
D
DG
6
C
N7
DG
6
1_555
hydrog
TYPE_6_PAIR
D
DG
1
C
N7
DG
1
1_555
D
DG
15
C
N2
DG
15
1_555
hydrog
TYPE_6_PAIR
D
DG
1
C
O6
DG
1
1_555
D
DG
15
C
N1
DG
15
1_555
hydrog
TYPE_6_PAIR
D
DG
2
C
N7
DG
2
1_555
D
DG
5
C
N2
DG
5
1_555
hydrog
TYPE_6_PAIR
D
DG
2
C
O6
DG
2
1_555
D
DG
5
C
N1
DG
5
1_555
hydrog
TYPE_6_PAIR
D
DG
2
C
N1
DG
2
1_555
D
DG
14
C
O6
DG
14
1_555
hydrog
TYPE_6_PAIR
D
DG
2
C
N2
DG
2
1_555
D
DG
14
C
N7
DG
14
1_555
hydrog
DT-DG MISPAIR
D
DT
4
C
O2
DT
4
1_555
D
DG
5
C
N1
DG
5
1_555
hydrog
TYPE_6_PAIR
D
DG
5
C
N7
DG
5
1_555
D
DG
11
C
N2
DG
11
1_555
hydrog
TYPE_6_PAIR
D
DG
5
C
O6
DG
5
1_555
D
DG
11
C
N1
DG
11
1_555
hydrog
TYPE_6_PAIR
D
DG
6
C
N1
DG
6
1_555
D
DG
10
C
O6
DG
10
1_555
hydrog
TYPE_6_PAIR
D
DG
6
C
N2
DG
6
1_555
D
DG
10
C
N7
DG
10
1_555
hydrog
DG-DG MISPAIR
D
DG
8
C
N2
DG
8
1_555
D
DG
10
C
O6
DG
10
1_555
hydrog
TYPE_6_PAIR
D
DG
10
C
N1
DG
10
1_555
D
DG
15
C
O6
DG
15
1_555
hydrog
TYPE_6_PAIR
D
DG
10
C
N2
DG
10
1_555
D
DG
15
C
N7
DG
15
1_555
hydrog
TYPE_6_PAIR
D
DG
11
C
N7
DG
11
1_555
D
DG
14
C
N2
DG
14
1_555
hydrog
TYPE_6_PAIR
D
DG
11
C
O6
DG
11
1_555
D
DG
14
C
N1
DG
14
1_555
HYDROLASE/HYDROLASE INHIBITOR/DNA
PROTEIN-DNA COMPLEX, SERINE PROTEASE, BLOOD COAGULATION, aptamer, serine protease fold, HYDROLASE-HYDROLASE INHIBITOR-DNA complex
H
SER
36
A
SER
22
A
1
H
PRO
37
A
PRO
23
-0.59
THRB_HUMAN
UNP
1
364
P00734
IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM
LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL
QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY
THVFRLKKWIQKVIDQFGE
THRB_HUMAN
UNP
2
328
P00734
TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR
3QLP
PDB
3
3QLP
364
622
3QLP
16
247
P00734
H
1
1
259
328
363
3QLP
1
16
P00734
H
L
2
1
36
1
15
3QLP
1
15
3QLP
D
3
1
15
7
7
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
H
SER
20
A
SER
5
H
ASP
21
A
ASP
6
H
GLN
156
A
GLN
161
H
PRO
161
A
PRO
166
H
LYS
135
A
LYS
135
H
GLY
140
A
GLY
140
H
PRO
198
A
PRO
208
H
LYS
202
A
LYS
212
H
TRP
207
A
TRP
219
H
TRP
215
A
TRP
227
H
GLY
226
A
GLY
238
H
HIS
230
A
HIS
242
H
MET
180
A
MET
185
H
ALA
183
A
ALA
188
H
LYS
81
A
LYS
77
H
SER
83
A
SER
79
H
LEU
64
A
LEU
59
H
ILE
68
A
ILE
63
H
GLN
30
A
GLN
15
H
ARG
35
A
ARG
20
H
GLU
39
A
GLU
25
H
LEU
46
A
LEU
32
H
TRP
51
A
TRP
37
H
THR
54
A
THR
40
H
ALA
104
A
ALA
101
H
LEU
108
A
LEU
105
H
LEU
85
A
LEU
81
H
ILE
90
A
ILE
86
H
LEU
60
A
LEU
46
H
TYR
60
A
TYR
47
A
H
LYS
60
A
LYS
52
H
ASN
60
A
ASN
53
F
G
23
I 2 2 2