0.029405 0.000000 0.007304 0.000000 0.019270 0.000000 0.000000 0.000000 0.026664 0.00000 0.00000 0.00000 de Serrano, V.S. Rodriguez, M.M. Schreiter, E.R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.00 103.95 90.00 34.008 51.894 38.644 C2 H4 O 44.053 ACETYL GROUP non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking N3 -1 42.020 AZIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C2 H6 O2 62.068 1,2-ETHANEDIOL ETHYLENE GLYCOL non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C34 H32 Fe N4 O4 616.487 PROTOPORPHYRIN IX CONTAINING FE HEME non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N C N 2 N O N 3 N C N 4 N H N 5 N H N 6 N H N 7 N H N 8 N N N 9 S C N 10 N C N 11 N O N 12 N C N 13 N O N 14 N H N 15 N H N 16 N H N 17 N H N 18 N H N 19 N H N 20 N H N 21 N N N 22 S C N 23 N C N 24 N O N 25 N C N 26 N C N 27 N C N 28 N N N 29 N C N 30 N N N 31 N N N 32 N O N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N N N 49 S C N 50 N C N 51 N O N 52 N C N 53 N C N 54 N O N 55 N N N 56 N O N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N N N 66 S C N 67 N C N 68 N O N 69 N C N 70 N C N 71 N O N 72 N O N 73 N O N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N N N 82 N N N 83 N N N 84 N N N 85 R C N 86 N C N 87 N O N 88 N C N 89 N S N 90 N O N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N C N 99 N O N 100 N C N 101 N O N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N N N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N N N 129 S C N 130 N C N 131 N O N 132 N C N 133 N C N 134 N C N 135 N O N 136 N O N 137 N O N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N N N 148 N C N 149 N C N 150 N O N 151 N O N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N C N 158 N C N 159 N C N 160 N C Y 161 N C Y 162 N C Y 163 N C Y 164 N C N 165 N C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N O N 171 N C N 172 N C N 173 N C N 174 N C N 175 N C N 176 N C N 177 N C Y 178 N C Y 179 N C Y 180 N C Y 181 N C N 182 N C N 183 N C N 184 N C N 185 N C N 186 N C N 187 N C N 188 N C N 189 N C N 190 N C N 191 N C N 192 N C N 193 N O N 194 N O Y 195 N N N 196 N N Y 197 N N N 198 N N N 199 N FE N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N N N 233 S C N 234 N C N 235 N O N 236 N C Y 237 N C Y 238 N N Y 239 N C Y 240 N C Y 241 N N N 242 N O N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N O N 254 N H N 255 N H N 256 N N N 257 S C N 258 N C N 259 N O N 260 S C N 261 N C N 262 N C N 263 N C N 264 N O N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N N N 279 S C N 280 N C N 281 N O N 282 N C N 283 N C N 284 N C N 285 N C N 286 N O N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N N N 301 S C N 302 N C N 303 N O N 304 N C N 305 N C N 306 N C N 307 N C N 308 N N N 309 N O N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N N N 326 S C N 327 N C N 328 N O N 329 N C N 330 N C N 331 N S N 332 N C N 333 N O N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N N N 346 S C N 347 N C N 348 N O N 349 N C Y 350 N C Y 351 N C Y 352 N C Y 353 N C Y 354 N C Y 355 N C N 356 N O N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N N N 369 S C N 370 N C N 371 N O N 372 N C N 373 N C N 374 N C N 375 N O N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N N N 386 S C N 387 N C N 388 N O N 389 N C N 390 N O N 391 N O N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N N N 400 S C N 401 N C N 402 N O N 403 R C N 404 N O N 405 N C N 406 N O N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N N N 417 S C N 418 N C N 419 N O N 420 N C Y 421 N C Y 422 N C Y 423 N C Y 424 N N Y 425 N C Y 426 N C Y 427 N C Y 428 N C Y 429 N C N 430 N O N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N N N 444 S C N 445 N C N 446 N O N 447 N C Y 448 N C Y 449 N C Y 450 N C Y 451 N C Y 452 N C Y 453 N C N 454 N O N 455 N O N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N N N 468 S C N 469 N C N 470 N O N 471 N C N 472 N C N 473 N C N 474 N O N 475 N H N 476 N H N 477 N H N 478 N H N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 1 N doub N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N doub N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N doub N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N doub N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N doub N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N doub N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N doub N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N doub N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N doub N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N doub N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N doub N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N doub N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N doub N 144 N sing N 145 N sing N 146 N sing N 147 N doub N 148 N sing N 149 N sing N 150 N doub N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N doub N 156 N sing N 157 N sing Y 158 N doub Y 159 N sing Y 160 N sing N 161 N sing Y 162 N doub N 163 N sing Y 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N doub N 175 N sing N 176 N sing N 177 N sing N 178 N doub N 179 N sing N 180 N sing N 181 N sing N 182 N doub N 183 N sing N 184 N sing N 185 N sing N 186 N doub N 187 N sing N 188 N sing N 189 N sing Y 190 N sing Y 191 N sing Y 192 N doub N 193 N sing Y 194 N sing N 195 N sing Y 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N doub N 206 N doub N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N doub N 235 N sing N 236 N sing N 237 N sing N 238 N sing Y 239 N sing Y 240 N doub Y 241 N doub N 242 N sing Y 243 N sing N 244 N sing Y 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N doub N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N doub N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N doub N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N doub N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N doub N 343 N sing N 344 N sing N 345 N sing N 346 N sing Y 347 N doub Y 348 N sing Y 349 N sing N 350 N sing Y 351 N doub N 352 N sing Y 353 N doub N 354 N sing Y 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N doub N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N doub N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N doub N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N doub N 412 N sing N 413 N sing N 414 N sing N 415 N sing Y 416 N doub Y 417 N sing Y 418 N sing N 419 N sing Y 420 N doub Y 421 N sing Y 422 N sing N 423 N sing Y 424 N sing Y 425 N doub N 426 N sing Y 427 N doub N 428 N sing Y 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N doub N 440 N sing N 441 N sing N 442 N sing N 443 N sing Y 444 N doub Y 445 N sing Y 446 N sing N 447 N sing Y 448 N doub N 449 N sing Y 450 N doub N 451 N sing Y 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N doub N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing To be Published 0353 High Resolution Structures of Blackfin Tuna Myoglobin 10.2210/pdb3qm9/pdb pdb_00003qm9 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2006-06-06 MAR CCD 165 mm SINGLE WAVELENGTH M x-ray 1 0.92 1.0 31-ID APS 0.92 SYNCHROTRON APS BEAMLINE 31-ID 15479.013 Myoglobin 1 nat polymer 616.487 PROTOPORPHYRIN IX CONTAINING FE 1 syn non-polymer 42.020 AZIDE ION 1 syn non-polymer 62.068 1,2-ETHANEDIOL 6 syn non-polymer 18.015 water 168 nat water no yes (ACE)ADFDAVLKCWGPVEADYTTIGGLVLTRLFKEHPETQKLFPKFAGIAQADIAGNAAVSAHGATVLKKLGELLKAKG SHAAILKPLANSHATKHKIPINNFKLISEVLVKVMQEKAGLDAGGQTALRNVMGIIIADLEANYKELGFS XADFDAVLKCWGPVEADYTTIGGLVLTRLFKEHPETQKLFPKFAGIAQADIAGNAAVSAHGATVLKKLGELLKAKGSHAA ILKPLANSHATKHKIPINNFKLISEVLVKVMQEKAGLDAGGQTALRNVMGIIIADLEANYKELGFS A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n blackfin tuna sample 48168 Thunnus atlanticus 1 2.14 42.47 VAPOR DIFFUSION, HANGING DROP 5.6 0.2 M potassium/sodium tartrate, 0.1 M sodium citrate, 2.0 M ammonium sulfate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn struct_conn_type struct_site repository Initial release Data collection Database references Derived calculations Refinement description 1 0 2012-02-08 1 1 2023-09-13 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn_type.id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id BLACKFIN TUNA METAQUO-MYOGLOBIN S-NITROSYLATED BLACKFIN TUNA MYOGLOBIN FERROUS NITROSYL BLACKFIN TUNA MYOGLOBIN RCSB Y RCSB 2011-02-03 REL REL HEM PROTOPORPHYRIN IX CONTAINING FE AZI AZIDE ION EDO 1,2-ETHANEDIOL HOH water THE AMINO ACID SEQUENCE OF BLACKFIN TUNA MYOGLOBIN IS NOT AVAILABLE IN UNIPROT SEQUENCE DATABASE. HOWEVER, IT IS ALMOST IDENTICAL TO BLUEFIN (P68189) AND BIGEYE TUNA (Q76G09) MYOGLOBINS, EXCEPT AN H->Q SUBSTITUTION AT RESIDUE 112. THIS SUBSTITUTION ALSO PRESENTS IN OTHER TUNA SPECIES. 2NRL PDB entry 2NRL PDB experimental model HEM 148 2 HEM HEM 201 A AZI 1 3 AZI AZI 202 A EDO 2 4 EDO EDO 203 A EDO 3 4 EDO EDO 204 A EDO 4 4 EDO EDO 205 A EDO 5 4 EDO EDO 206 A EDO 6 4 EDO EDO 207 A EDO 7 4 EDO EDO 208 A HOH 155 5 HOH HOH 301 A HOH 156 5 HOH HOH 302 A HOH 157 5 HOH HOH 303 A HOH 158 5 HOH HOH 304 A HOH 162 5 HOH HOH 305 A HOH 164 5 HOH HOH 306 A HOH 165 5 HOH HOH 307 A HOH 166 5 HOH HOH 308 A HOH 167 5 HOH HOH 309 A HOH 168 5 HOH HOH 310 A HOH 169 5 HOH HOH 311 A HOH 170 5 HOH HOH 312 A HOH 171 5 HOH HOH 313 A HOH 173 5 HOH HOH 314 A HOH 174 5 HOH HOH 315 A HOH 175 5 HOH HOH 316 A HOH 176 5 HOH HOH 317 A HOH 177 5 HOH HOH 318 A HOH 181 5 HOH HOH 319 A HOH 182 5 HOH HOH 320 A HOH 183 5 HOH HOH 321 A HOH 184 5 HOH HOH 322 A HOH 185 5 HOH HOH 323 A HOH 188 5 HOH HOH 324 A HOH 189 5 HOH HOH 325 A HOH 190 5 HOH HOH 326 A HOH 191 5 HOH HOH 327 A HOH 192 5 HOH HOH 328 A HOH 193 5 HOH HOH 329 A HOH 194 5 HOH HOH 330 A HOH 196 5 HOH HOH 331 A HOH 198 5 HOH HOH 332 A HOH 200 5 HOH HOH 333 A HOH 201 5 HOH HOH 334 A HOH 205 5 HOH HOH 335 A HOH 206 5 HOH HOH 336 A HOH 207 5 HOH HOH 337 A HOH 208 5 HOH HOH 338 A HOH 209 5 HOH HOH 339 A HOH 210 5 HOH HOH 340 A HOH 211 5 HOH HOH 341 A HOH 212 5 HOH HOH 342 A HOH 213 5 HOH HOH 343 A HOH 214 5 HOH HOH 344 A HOH 215 5 HOH HOH 345 A HOH 2 5 HOH HOH 346 A HOH 3 5 HOH HOH 347 A HOH 5 5 HOH HOH 348 A HOH 6 5 HOH HOH 349 A HOH 220 5 HOH HOH 350 A HOH 221 5 HOH HOH 351 A HOH 222 5 HOH HOH 352 A HOH 223 5 HOH HOH 353 A HOH 224 5 HOH HOH 354 A HOH 225 5 HOH HOH 355 A HOH 226 5 HOH HOH 356 A HOH 227 5 HOH HOH 357 A HOH 228 5 HOH HOH 358 A HOH 229 5 HOH HOH 359 A HOH 230 5 HOH HOH 360 A HOH 231 5 HOH HOH 361 A HOH 232 5 HOH HOH 362 A HOH 233 5 HOH HOH 363 A HOH 234 5 HOH HOH 364 A HOH 235 5 HOH HOH 365 A HOH 236 5 HOH HOH 366 A HOH 237 5 HOH HOH 367 A HOH 238 5 HOH HOH 368 A HOH 239 5 HOH HOH 369 A HOH 240 5 HOH HOH 370 A HOH 241 5 HOH HOH 371 A HOH 242 5 HOH HOH 372 A HOH 243 5 HOH HOH 373 A HOH 244 5 HOH HOH 374 A HOH 245 5 HOH HOH 375 A HOH 7 5 HOH HOH 376 A HOH 8 5 HOH HOH 377 A HOH 9 5 HOH HOH 378 A HOH 10 5 HOH HOH 379 A HOH 11 5 HOH HOH 380 A HOH 12 5 HOH HOH 381 A HOH 13 5 HOH HOH 382 A HOH 14 5 HOH HOH 383 A HOH 16 5 HOH HOH 384 A HOH 17 5 HOH HOH 385 A HOH 18 5 HOH HOH 386 A HOH 19 5 HOH HOH 387 A HOH 20 5 HOH HOH 388 A HOH 21 5 HOH HOH 389 A HOH 22 5 HOH HOH 390 A HOH 23 5 HOH HOH 391 A HOH 24 5 HOH HOH 392 A HOH 25 5 HOH HOH 393 A HOH 26 5 HOH HOH 394 A HOH 27 5 HOH HOH 395 A HOH 31 5 HOH HOH 396 A HOH 32 5 HOH HOH 397 A HOH 34 5 HOH HOH 398 A HOH 35 5 HOH HOH 399 A HOH 36 5 HOH HOH 400 A HOH 37 5 HOH HOH 401 A HOH 38 5 HOH HOH 402 A HOH 39 5 HOH HOH 403 A HOH 40 5 HOH HOH 404 A HOH 41 5 HOH HOH 405 A HOH 43 5 HOH HOH 406 A HOH 45 5 HOH HOH 407 A HOH 46 5 HOH HOH 408 A HOH 47 5 HOH HOH 409 A HOH 49 5 HOH HOH 410 A HOH 50 5 HOH HOH 411 A HOH 52 5 HOH HOH 412 A HOH 54 5 HOH HOH 413 A HOH 55 5 HOH HOH 414 A HOH 56 5 HOH HOH 415 A HOH 57 5 HOH HOH 416 A HOH 60 5 HOH HOH 417 A HOH 61 5 HOH HOH 418 A HOH 64 5 HOH HOH 419 A HOH 65 5 HOH HOH 420 A HOH 67 5 HOH HOH 421 A HOH 69 5 HOH HOH 422 A HOH 70 5 HOH HOH 423 A HOH 71 5 HOH HOH 424 A HOH 72 5 HOH HOH 425 A HOH 74 5 HOH HOH 426 A HOH 77 5 HOH HOH 427 A HOH 89 5 HOH HOH 428 A HOH 90 5 HOH HOH 429 A HOH 93 5 HOH HOH 430 A HOH 97 5 HOH HOH 431 A HOH 98 5 HOH HOH 432 A HOH 105 5 HOH HOH 433 A HOH 111 5 HOH HOH 434 A HOH 113 5 HOH HOH 435 A HOH 114 5 HOH HOH 436 A HOH 119 5 HOH HOH 437 A HOH 123 5 HOH HOH 438 A HOH 124 5 HOH HOH 439 A HOH 125 5 HOH HOH 440 A HOH 126 5 HOH HOH 441 A HOH 127 5 HOH HOH 442 A HOH 128 5 HOH HOH 443 A HOH 129 5 HOH HOH 444 A HOH 130 5 HOH HOH 445 A HOH 131 5 HOH HOH 446 A HOH 132 5 HOH HOH 447 A HOH 133 5 HOH HOH 448 A HOH 134 5 HOH HOH 449 A HOH 135 5 HOH HOH 450 A HOH 136 5 HOH HOH 451 A HOH 137 5 HOH HOH 452 A HOH 138 5 HOH HOH 453 A HOH 140 5 HOH HOH 454 A HOH 141 5 HOH HOH 455 A HOH 142 5 HOH HOH 456 A HOH 143 5 HOH HOH 457 A HOH 144 5 HOH HOH 458 A HOH 145 5 HOH HOH 459 A HOH 146 5 HOH HOH 460 A HOH 147 5 HOH HOH 461 A HOH 148 5 HOH HOH 462 A HOH 149 5 HOH HOH 463 A HOH 150 5 HOH HOH 464 A HOH 151 5 HOH HOH 465 A HOH 152 5 HOH HOH 466 A HOH 153 5 HOH HOH 467 A HOH 154 5 HOH HOH 468 A ACE 1 n 1 ACE 1 A ALA 2 n 2 ALA 2 A ASP 3 n 3 ASP 3 A PHE 4 n 4 PHE 4 A ASP 5 n 5 ASP 5 A ALA 6 n 6 ALA 6 A VAL 7 n 7 VAL 7 A LEU 8 n 8 LEU 8 A LYS 9 n 9 LYS 9 A CYS 10 n 10 CYS 10 A TRP 11 n 11 TRP 11 A GLY 12 n 12 GLY 12 A PRO 13 n 13 PRO 13 A VAL 14 n 14 VAL 14 A GLU 15 n 15 GLU 15 A ALA 16 n 16 ALA 16 A ASP 17 n 17 ASP 17 A TYR 18 n 18 TYR 18 A THR 19 n 19 THR 19 A THR 20 n 20 THR 20 A ILE 21 n 21 ILE 21 A GLY 22 n 22 GLY 22 A GLY 23 n 23 GLY 23 A LEU 24 n 24 LEU 24 A VAL 25 n 25 VAL 25 A LEU 26 n 26 LEU 26 A THR 27 n 27 THR 27 A ARG 28 n 28 ARG 28 A LEU 29 n 29 LEU 29 A PHE 30 n 30 PHE 30 A LYS 31 n 31 LYS 31 A GLU 32 n 32 GLU 32 A HIS 33 n 33 HIS 33 A PRO 34 n 34 PRO 34 A GLU 35 n 35 GLU 35 A THR 36 n 36 THR 36 A GLN 37 n 37 GLN 37 A LYS 38 n 38 LYS 38 A LEU 39 n 39 LEU 39 A PHE 40 n 40 PHE 40 A PRO 41 n 41 PRO 41 A LYS 42 n 42 LYS 42 A PHE 43 n 43 PHE 43 A ALA 44 n 44 ALA 44 A GLY 45 n 45 GLY 45 A ILE 46 n 46 ILE 46 A ALA 47 n 47 ALA 47 A GLN 48 n 48 GLN 48 A ALA 49 n 49 ALA 49 A ASP 50 n 50 ASP 50 A ILE 51 n 51 ILE 51 A ALA 52 n 52 ALA 52 A GLY 53 n 53 GLY 53 A ASN 54 n 54 ASN 54 A ALA 55 n 55 ALA 55 A ALA 56 n 56 ALA 56 A VAL 57 n 57 VAL 57 A SER 58 n 58 SER 58 A ALA 59 n 59 ALA 59 A HIS 60 n 60 HIS 60 A GLY 61 n 61 GLY 61 A ALA 62 n 62 ALA 62 A THR 63 n 63 THR 63 A VAL 64 n 64 VAL 64 A LEU 65 n 65 LEU 65 A LYS 66 n 66 LYS 66 A LYS 67 n 67 LYS 67 A LEU 68 n 68 LEU 68 A GLY 69 n 69 GLY 69 A GLU 70 n 70 GLU 70 A LEU 71 n 71 LEU 71 A LEU 72 n 72 LEU 72 A LYS 73 n 73 LYS 73 A ALA 74 n 74 ALA 74 A LYS 75 n 75 LYS 75 A GLY 76 n 76 GLY 76 A SER 77 n 77 SER 77 A HIS 78 n 78 HIS 78 A ALA 79 n 79 ALA 79 A ALA 80 n 80 ALA 80 A ILE 81 n 81 ILE 81 A LEU 82 n 82 LEU 82 A LYS 83 n 83 LYS 83 A PRO 84 n 84 PRO 84 A LEU 85 n 85 LEU 85 A ALA 86 n 86 ALA 86 A ASN 87 n 87 ASN 87 A SER 88 n 88 SER 88 A HIS 89 n 89 HIS 89 A ALA 90 n 90 ALA 90 A THR 91 n 91 THR 91 A LYS 92 n 92 LYS 92 A HIS 93 n 93 HIS 93 A LYS 94 n 94 LYS 94 A ILE 95 n 95 ILE 95 A PRO 96 n 96 PRO 96 A ILE 97 n 97 ILE 97 A ASN 98 n 98 ASN 98 A ASN 99 n 99 ASN 99 A PHE 100 n 100 PHE 100 A LYS 101 n 101 LYS 101 A LEU 102 n 102 LEU 102 A ILE 103 n 103 ILE 103 A SER 104 n 104 SER 104 A GLU 105 n 105 GLU 105 A VAL 106 n 106 VAL 106 A LEU 107 n 107 LEU 107 A VAL 108 n 108 VAL 108 A LYS 109 n 109 LYS 109 A VAL 110 n 110 VAL 110 A MET 111 n 111 MET 111 A GLN 112 n 112 GLN 112 A GLU 113 n 113 GLU 113 A LYS 114 n 114 LYS 114 A ALA 115 n 115 ALA 115 A GLY 116 n 116 GLY 116 A LEU 117 n 117 LEU 117 A ASP 118 n 118 ASP 118 A ALA 119 n 119 ALA 119 A GLY 120 n 120 GLY 120 A GLY 121 n 121 GLY 121 A GLN 122 n 122 GLN 122 A THR 123 n 123 THR 123 A ALA 124 n 124 ALA 124 A LEU 125 n 125 LEU 125 A ARG 126 n 126 ARG 126 A ASN 127 n 127 ASN 127 A VAL 128 n 128 VAL 128 A MET 129 n 129 MET 129 A GLY 130 n 130 GLY 130 A ILE 131 n 131 ILE 131 A ILE 132 n 132 ILE 132 A ILE 133 n 133 ILE 133 A ALA 134 n 134 ALA 134 A ASP 135 n 135 ASP 135 A LEU 136 n 136 LEU 136 A GLU 137 n 137 GLU 137 A ALA 138 n 138 ALA 138 A ASN 139 n 139 ASN 139 A TYR 140 n 140 TYR 140 A LYS 141 n 141 LYS 141 A GLU 142 n 142 GLU 142 A LEU 143 n 143 LEU 143 A GLY 144 n 144 GLY 144 A PHE 145 n 145 PHE 145 A SER 146 n 146 SER 146 A author_and_software_defined_assembly PISA 1 monomeric A HIS 89 A NE2 HIS 89 1_555 A HEM 201 A B FE HEM 1_555 A HEM 201 A B NA HEM 1_555 90.3 A HIS 89 A NE2 HIS 89 1_555 A HEM 201 A B FE HEM 1_555 A HEM 201 A B NB HEM 1_555 91.7 A HEM 201 A B NA HEM 1_555 A HEM 201 A B FE HEM 1_555 A HEM 201 A B NB HEM 1_555 88.8 A HIS 89 A NE2 HIS 89 1_555 A HEM 201 A B FE HEM 1_555 A HEM 201 A B NC HEM 1_555 95.3 A HEM 201 A B NA HEM 1_555 A HEM 201 A B FE HEM 1_555 A HEM 201 A B NC HEM 1_555 174.4 A HEM 201 A B NB HEM 1_555 A HEM 201 A B FE HEM 1_555 A HEM 201 A B NC HEM 1_555 90.7 A HIS 89 A NE2 HIS 89 1_555 A HEM 201 A B FE HEM 1_555 A HEM 201 A B ND HEM 1_555 94.4 A HEM 201 A B NA HEM 1_555 A HEM 201 A B FE HEM 1_555 A HEM 201 A B ND HEM 1_555 91.4 A HEM 201 A B NB HEM 1_555 A HEM 201 A B FE HEM 1_555 A HEM 201 A B ND HEM 1_555 173.9 A HEM 201 A B NC HEM 1_555 A HEM 201 A B FE HEM 1_555 A HEM 201 A B ND HEM 1_555 88.5 A HIS 89 A NE2 HIS 89 1_555 A HEM 201 A B FE HEM 1_555 A AZI 202 A C N1 AZI 1_555 176.5 A HEM 201 A B NA HEM 1_555 A HEM 201 A B FE HEM 1_555 A AZI 202 A C N1 AZI 1_555 91.7 A HEM 201 A B NB HEM 1_555 A HEM 201 A B FE HEM 1_555 A AZI 202 A C N1 AZI 1_555 91.2 A HEM 201 A B NC HEM 1_555 A HEM 201 A B FE HEM 1_555 A AZI 202 A C N1 AZI 1_555 82.7 A HEM 201 A B ND HEM 1_555 A HEM 201 A B FE HEM 1_555 A AZI 202 A C N1 AZI 1_555 82.7 A HIS 89 A NE2 HIS 89 1_555 A HEM 201 B B FE HEM 1_555 A HEM 201 A B NA HEM 1_555 81.5 A HIS 89 A NE2 HIS 89 1_555 A HEM 201 B B FE HEM 1_555 A HEM 201 A B NB HEM 1_555 84.5 A HEM 201 A B NA HEM 1_555 A HEM 201 B B FE HEM 1_555 A HEM 201 A B NB HEM 1_555 90.9 A HIS 89 A NE2 HIS 89 1_555 A HEM 201 B B FE HEM 1_555 A HEM 201 A B NC HEM 1_555 85.6 A HEM 201 A B NA HEM 1_555 A HEM 201 B B FE HEM 1_555 A HEM 201 A B NC HEM 1_555 166.4 A HEM 201 A B NB HEM 1_555 A HEM 201 B B FE HEM 1_555 A HEM 201 A B NC HEM 1_555 92.3 A HIS 89 A NE2 HIS 89 1_555 A HEM 201 B B FE HEM 1_555 A HEM 201 A B ND HEM 1_555 82.9 A HEM 201 A B NA HEM 1_555 A HEM 201 B B FE HEM 1_555 A HEM 201 A B ND HEM 1_555 88.5 A HEM 201 A B NB HEM 1_555 A HEM 201 B B FE HEM 1_555 A HEM 201 A B ND HEM 1_555 167.3 A HEM 201 A B NC HEM 1_555 A HEM 201 B B FE HEM 1_555 A HEM 201 A B ND HEM 1_555 85.5 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A C GLY 76 B A C GLY 76 0 Y 1 A A OE2 O GLU HOH 70 340 1.98 A 1 A A OD2 O ASP HOH 17 428 2.01 A 1 A A O1D O HEM HOH 201 437 2.16 B 1 A A CD O GLU HOH 70 340 2.19 A 1 6.30 0.90 118.30 124.60 A A A CB CG OD1 ASP ASP ASP 17 17 17 A A A N 1 -4.01 0.50 120.30 116.29 A A A NE CZ NH2 ARG ARG ARG 28 28 28 B B B N 1 7.53 1.20 123.30 130.83 A A A OE1 CD OE2 GLU GLU GLU 32 32 32 B B B N 1 -5.58 0.90 118.30 112.72 A A A CB CG OD2 ASP ASP ASP 50 50 50 A A A N 1 -20.04 2.30 115.30 95.26 A A A CA CB CG LEU LEU LEU 82 82 82 B B B N 1 15.80 1.70 111.00 126.80 A A A CB CG CD1 LEU LEU LEU 82 82 82 B B B N 1 -14.22 1.20 123.30 109.08 A A A OE1 CD OE2 GLU GLU GLU 105 105 105 A A A N 1 -3.30 0.50 120.30 117.00 A A A NE CZ NH1 ARG ARG ARG 126 126 126 A A A N 1 A A CE NZ LYS LYS 38 38 0.206 0.025 1.486 1.692 C C N 1 A A C O GLY GLY 76 76 -0.114 0.016 1.232 1.118 B B N 1 A A CB CG2 ILE ILE 81 81 -0.202 0.031 1.524 1.322 A A N 1 A A N CA LEU LEU 82 82 0.122 0.020 1.459 1.581 A N 1 A A CD OE1 GLU GLU 105 105 -0.117 0.011 1.252 1.135 A A N 1 A A CD OE2 GLU GLU 105 105 -0.118 0.011 1.252 1.134 A A N 1 A ASP 17 -155.33 72.79 1 A ASP 17 -147.13 57.12 1 A PHE 145 A -119.15 74.25 7.658 4.67 0.00 4.66 -1.96 0.00 -2.70 0.980 0.974 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.13324 0.12002 0.12068 0.91 17.27 4356 88244 82720 5.0 93.74 0.318 0.008 RANDOM 1 Anisotropic THROUGHOUT RIGID BODY refinement 0.004 0.004 0.80 0.80 1.40 PDB entry 2NRL MAXIMUM LIKELIHOOD MASK 0.91 17.27 168 1329 70 0 1091 0.030 0.022 1544 0.007 0.020 1090 2.430 2.170 2134 1.152 3.000 2714 4.996 5.000 212 32.146 25.690 58 13.671 15.000 301 17.109 15.000 5 0.128 0.200 225 0.013 0.020 1703 0.003 0.020 261 2.278 1.500 875 0.961 1.500 354 3.324 2.000 1435 4.823 3.000 669 6.236 4.500 669 2.250 3.000 2631 0.305 0.293 0.934 309 5631 20 87.34 0.91 17.27 3QM9 88244 82720 2.0 0.056 1 31.21 5.9 93.74 0.301 0.91 0.934 5.9 1 5.5 87.34 data collection HKL-2000 refinement REFMAC 5.5.0109 data reduction DENZO data scaling SCALEPACK Blackfin tuna azido-myoglobin, atomic resolution 1 N N 2 N N 3 N N 4 N N 4 N N 4 N N 4 N N 4 N N 4 N N 5 N N A ALA 2 A ALA 2 HELX_P A LYS 9 A LYS 9 1 1 8 A TRP 11 A TRP 11 HELX_P A ALA 16 A ALA 16 1 2 6 A ASP 17 A ASP 17 HELX_P A HIS 33 A HIS 33 1 3 17 A HIS 33 A HIS 33 HELX_P A LYS 38 A LYS 38 1 4 6 A ALA 47 A ALA 47 HELX_P A ILE 51 A ILE 51 5 5 5 A ASN 54 A ASN 54 HELX_P A ALA 74 A ALA 74 1 6 21 A HIS 78 A HIS 78 HELX_P A LYS 92 A LYS 92 1 7 15 A ILE 97 A ILE 97 HELX_P A ALA 115 A ALA 115 1 8 19 A ASP 118 A ASP 118 HELX_P A LEU 143 A LEU 143 1 9 26 covale 1.333 both A ACE 1 A C ACE 1 1_555 A ALA 2 A N ALA 2 1_555 metalc 1.963 A A HIS 89 A NE2 HIS 89 1_555 A HEM 201 B FE HEM 1_555 metalc 2.288 B A HIS 89 A NE2 HIS 89 1_555 A HEM 201 B FE HEM 1_555 metalc 2.104 A A A HEM 201 B FE HEM 1_555 A AZI 202 C N1 AZI 1_555 TRANSPORT PROTEIN myoglobin, oxygen storage, heme, iron, TRANSPORT PROTEIN 3QM9 PDB 1 3QM9 1 146 3QM9 1 146 3QM9 A 1 1 146 BINDING SITE FOR RESIDUE HEM A 201 A HEM 201 Software 22 BINDING SITE FOR RESIDUE AZI A 202 A AZI 202 Software 6 BINDING SITE FOR RESIDUE EDO A 203 A EDO 203 Software 6 BINDING SITE FOR RESIDUE EDO A 204 A EDO 204 Software 3 BINDING SITE FOR RESIDUE EDO A 205 A EDO 205 Software 4 BINDING SITE FOR RESIDUE EDO A 206 A EDO 206 Software 4 BINDING SITE FOR RESIDUE EDO A 207 A EDO 207 Software 8 BINDING SITE FOR RESIDUE EDO A 208 A EDO 208 Software 6 A LEU 39 A LEU 39 22 1_555 A PHE 40 A PHE 40 22 1_555 A LYS 42 A LYS 42 22 1_555 A HIS 60 A HIS 60 22 1_555 A THR 63 A THR 63 22 1_555 A VAL 64 A VAL 64 22 1_555 A LEU 68 A LEU 68 22 1_555 A LEU 85 A LEU 85 22 1_555 A SER 88 A SER 88 22 1_555 A HIS 89 A HIS 89 22 1_555 A HIS 93 A HIS 93 22 1_555 A ILE 95 A ILE 95 22 1_555 A ASN 99 A ASN 99 22 1_555 A PHE 100 A PHE 100 22 1_555 A AZI 202 C AZI 22 1_555 A HOH 324 J HOH 22 1_555 A HOH 339 J HOH 22 1_555 A HOH 343 J HOH 22 1_555 A HOH 375 J HOH 22 1_555 A HOH 381 J HOH 22 1_555 A HOH 393 J HOH 22 1_555 A HOH 437 J HOH 22 1_555 A PHE 40 A PHE 40 6 1_555 A HIS 60 A HIS 60 6 1_555 A VAL 64 A VAL 64 6 1_555 A ILE 103 A ILE 103 6 1_555 A HEM 201 B HEM 6 1_555 A HOH 339 J HOH 6 1_555 A LYS 83 A LYS 83 6 1_555 A ASN 87 A ASN 87 6 1_555 A ASN 139 A ASN 139 6 1_555 A LEU 143 A LEU 143 6 1_555 A EDO 204 E EDO 6 1_555 A HOH 444 J HOH 6 1_555 A GLU 142 A GLU 142 3 1_555 A EDO 203 D EDO 3 1_555 A HOH 443 J HOH 3 1_555 A ALA 52 A ALA 52 4 1_555 A GLY 53 A GLY 53 4 1_555 A SER 58 A SER 58 4 1_555 A HOH 448 J HOH 4 1_555 A ALA 47 A ALA 47 4 1_555 A GLN 48 A GLN 48 4 1_555 A HOH 311 J HOH 4 1_555 A HOH 400 J HOH 4 1_555 A ALA 90 A ALA 90 8 1_555 A LYS 94 A LYS 94 8 1_555 A ILE 95 A ILE 95 8 1_555 A TYR 140 A TYR 140 8 1_555 A PHE 145 A PHE 145 8 1_555 A HOH 391 J HOH 8 1_555 A HOH 432 J HOH 8 1_555 A HOH 449 J HOH 8 1_556 A GLY 53 A GLY 53 6 1_555 A ASN 54 A ASN 54 6 1_555 A ALA 55 A ALA 55 6 1_555 A ALA 56 A ALA 56 6 1_555 A HOH 453 J HOH 6 1_555 A HOH 467 J HOH 6 1_455 4 P 1 21 1