0.014327
0.000000
0.002604
0.000000
0.014006
0.000000
0.000000
0.000000
0.014019
0.00000
0.00000
0.00000
Biela, A.
Heine, A.
Klebe, G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
100.30
90.00
69.800
71.400
72.500
C21 H27 N4 O2 1
367.465
D-phenylalanyl-N-[(1-methylpyridinium-3-yl)methyl]-L-prolinamide
peptide-like
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C9 H11 N O6 S
261.252
n
O-SULFO-L-TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
R
C
N
3
N
C
N
4
N
O
N
5
N
C
Y
6
N
C
Y
7
N
C
Y
8
N
C
Y
9
N
C
Y
10
N
C
Y
11
N
C
N
12
N
N
N
13
S
C
N
14
N
C
N
15
N
O
N
16
N
C
N
17
N
C
N
18
N
C
N
19
N
C
Y
20
N
C
Y
21
N
C
N
22
N
C
Y
23
N
C
Y
24
N
C
Y
25
N
C
N
26
N
N
Y
27
N
N
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
N
N
56
S
C
N
57
N
C
N
58
N
O
N
59
N
C
N
60
N
O
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
N
N
69
S
C
N
70
N
C
N
71
N
O
N
72
N
C
N
73
N
C
N
74
N
C
N
75
N
N
N
76
N
C
N
77
N
N
N
78
N
N
N
79
N
O
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
N
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
N
N
113
S
C
N
114
N
C
N
115
N
O
N
116
N
C
N
117
N
C
N
118
N
O
N
119
N
O
N
120
N
O
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
N
N
129
R
C
N
130
N
C
N
131
N
O
N
132
N
C
N
133
N
S
N
134
N
O
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
N
N
143
S
C
N
144
N
C
N
145
N
O
N
146
N
C
N
147
N
C
N
148
N
C
N
149
N
O
N
150
N
N
N
151
N
O
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
N
N
163
S
C
N
164
N
C
N
165
N
O
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
O
N
171
N
O
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
N
N
182
N
C
N
183
N
C
N
184
N
O
N
185
N
O
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
C
N
192
N
O
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
O
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
Y
210
N
C
Y
211
N
N
Y
212
N
C
Y
213
N
C
Y
214
N
N
N
215
N
O
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
O
N
227
N
H
N
228
N
H
N
229
N
N
N
230
S
C
N
231
N
C
N
232
N
O
N
233
S
C
N
234
N
C
N
235
N
C
N
236
N
C
N
237
N
O
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
C
N
259
N
O
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
C
N
281
N
N
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
N
N
299
S
C
N
300
N
C
N
301
N
O
N
302
N
C
N
303
N
C
N
304
N
S
N
305
N
C
N
306
N
O
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
NA
N
319
R
C
N
320
R
C
N
321
R
C
N
322
S
C
N
323
R
C
N
324
N
C
N
325
N
C
N
326
N
C
N
327
N
N
N
328
N
O
N
329
N
O
N
330
N
O
N
331
N
O
N
332
N
O
N
333
N
O
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
N
N
350
S
C
N
351
N
C
N
352
N
O
N
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
P
N
373
N
O
N
374
N
O
N
375
N
O
N
376
N
O
N
377
N
N
N
378
S
C
N
379
N
C
N
380
N
O
N
381
N
C
N
382
N
C
N
383
N
C
N
384
N
O
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
N
N
395
S
C
N
396
N
C
N
397
N
O
N
398
N
C
N
399
N
O
N
400
N
O
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
N
N
409
S
C
N
410
N
C
N
411
N
O
N
412
R
C
N
413
N
O
N
414
N
C
N
415
N
O
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
N
N
426
S
C
N
427
N
C
N
428
N
O
N
429
N
C
Y
430
N
C
Y
431
N
C
Y
432
N
C
Y
433
N
N
Y
434
N
C
Y
435
N
C
Y
436
N
C
Y
437
N
C
Y
438
N
C
N
439
N
O
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
N
N
453
S
C
N
454
N
C
N
455
N
O
N
456
N
C
Y
457
N
C
Y
458
N
C
Y
459
N
C
Y
460
N
C
Y
461
N
C
Y
462
N
C
N
463
N
O
N
464
N
O
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
N
N
477
S
C
N
478
N
C
Y
479
N
C
Y
480
N
C
Y
481
N
C
Y
482
N
C
Y
483
N
C
Y
484
N
C
N
485
N
O
N
486
N
S
N
487
N
O
N
488
N
O
N
489
N
O
N
490
N
C
N
491
N
O
N
492
N
O
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
N
N
505
S
C
N
506
N
C
N
507
N
O
N
508
N
C
N
509
N
C
N
510
N
C
N
511
N
O
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
H
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
H
N
1
N
sing
Y
2
N
doub
Y
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
doub
Y
9
N
sing
Y
10
N
doub
Y
11
N
sing
Y
12
N
doub
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
doub
N
17
N
sing
N
18
N
sing
N
19
N
sing
Y
20
N
doub
Y
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
sing
N
26
N
sing
Y
27
N
sing
Y
28
N
doub
Y
29
N
doub
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
doub
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
doub
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
doub
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
doub
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
doub
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
Y
209
N
sing
Y
210
N
doub
Y
211
N
doub
N
212
N
sing
Y
213
N
sing
N
214
N
sing
Y
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
doub
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
doub
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
doub
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
Y
347
N
doub
Y
348
N
sing
Y
349
N
sing
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
doub
N
354
N
sing
Y
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
doub
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
doub
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
doub
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
doub
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
Y
420
N
doub
Y
421
N
sing
Y
422
N
sing
N
423
N
sing
Y
424
N
doub
Y
425
N
sing
Y
426
N
sing
N
427
N
sing
Y
428
N
sing
Y
429
N
doub
N
430
N
sing
Y
431
N
doub
N
432
N
sing
Y
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
doub
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
Y
448
N
doub
Y
449
N
sing
Y
450
N
sing
N
451
N
sing
Y
452
N
doub
N
453
N
sing
Y
454
N
doub
N
455
N
sing
Y
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
Y
470
N
doub
Y
471
N
sing
Y
472
N
sing
N
473
N
sing
Y
474
N
doub
N
475
N
sing
Y
476
N
doub
N
477
N
sing
Y
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
doub
N
483
N
doub
N
484
N
sing
N
485
N
sing
N
486
N
doub
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
doub
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
418
350
366
10.1016/j.jmb.2012.01.054
22366545
Impact of ligand and protein desolvation on ligand binding to the S1 pocket of thrombin
2012
10.2210/pdb3qto/pdb
pdb_00003qto
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
107
1
Collimating mirror
CCD
2009-06-22
MARMOSAIC 225 mm CCD
Bartels Monochromator
SINGLE WAVELENGTH
M
x-ray
1
1.00
1.0
X06DA
SLS
1.00
SYNCHROTRON
SLS BEAMLINE X06DA
4096.534
Thrombin light chain
3.4.21.5
1
nat
polymer
29780.219
Thrombin heavy chain
3.4.21.5
1
nat
polymer
1662.683
Hirudin variant-2
residues in UNP 60-72
1
syn
polymer
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
non-polymer
367.465
D-phenylalanyl-N-[(1-methylpyridinium-3-yl)methyl]-L-prolinamide
1
syn
non-polymer
92.094
GLYCEROL
1
syn
non-polymer
94.971
PHOSPHATE ION
1
syn
non-polymer
22.990
SODIUM ION
2
syn
non-polymer
18.015
water
366
nat
water
no
no
TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR
TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR
L
polypeptide(L)
no
no
IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM
LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL
QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY
THVFRLKKWIQKVIDQFGE
IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM
LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL
QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY
THVFRLKKWIQKVIDQFGE
H
polypeptide(L)
no
yes
NGDFEEIPEE(TYS)LQ
NGDFEEIPEEYLQ
I
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
9606
Homo sapiens
human
sample
9606
Homo sapiens
1
2.50
50.81
VAPOR DIFFUSION, HANGING DROP
7.5
15% PEG8000, 20mM sodium phophate, 175mM sodium chloride, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277.15K
277.15
chem_comp
entity
pdbx_chem_comp_identifier
pdbx_entity_nonpoly
struct_conn
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
chem_comp_atom
chem_comp_bond
repository
Initial release
Carbohydrate remediation
repository
Remediation
Database references
Other
Data collection
Derived calculations
Structure summary
Data collection
Database references
Refinement description
Structure summary
Data collection
1
0
2012-02-29
1
1
2012-06-20
1
2
2012-12-12
1
3
2020-07-29
1
4
2023-11-01
1
5
2023-12-06
_chem_comp.name
_chem_comp.type
_entity.pdbx_description
_pdbx_entity_nonpoly.name
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_role
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_chem_comp_atom.atom_id
_chem_comp_bond.atom_id_2
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
RCSB
Y
PDBJ
2011-02-23
REL
REL
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose
10P
D-phenylalanyl-N-[(1-methylpyridinium-3-yl)methyl]-L-prolinamide
GOL
GLYCEROL
PO4
PHOSPHATE ION
NA
SODIUM ION
HOH
water
Synthetic Fragment of Hirudin From Hirudo Medicinalis
6421
Medicinal leech
Hirudo medicinalis
sample
1H8D
PDB
experimental model
Thrombin inhibitor
D-PHENYLALANYL-N-[(1-METHYLPYRIDINIUM-3-YL)METHYL]-L-PROLINAMIDE
Peptide-like
NAG
260
4
NAG
G
NAG
260
H
10P
1001
5
10P
10P
1001
H
GOL
1501
6
GOL
GOL
1501
H
PO4
1801
7
PO4
PO4
1801
H
NA
2001
8
NA
NA
2001
H
NA
2002
8
NA
NA
2002
H
HOH
3001
9
HOH
HOH
3001
L
HOH
3002
9
HOH
HOH
3002
L
HOH
3003
9
HOH
HOH
3003
L
HOH
3004
9
HOH
HOH
3004
L
HOH
3005
9
HOH
HOH
3005
L
HOH
3006
9
HOH
HOH
3006
L
HOH
3007
9
HOH
HOH
3007
L
HOH
3008
9
HOH
HOH
3008
L
HOH
3009
9
HOH
HOH
3009
L
HOH
3010
9
HOH
HOH
3010
L
HOH
3011
9
HOH
HOH
3011
L
HOH
3012
9
HOH
HOH
3012
L
HOH
3013
9
HOH
HOH
3013
L
HOH
3014
9
HOH
HOH
3014
L
HOH
3015
9
HOH
HOH
3015
L
HOH
3016
9
HOH
HOH
3016
L
HOH
3017
9
HOH
HOH
3017
L
HOH
3018
9
HOH
HOH
3018
L
HOH
3019
9
HOH
HOH
3019
L
HOH
3020
9
HOH
HOH
3020
L
HOH
3021
9
HOH
HOH
3021
L
HOH
3022
9
HOH
HOH
3022
L
HOH
3023
9
HOH
HOH
3023
L
HOH
3024
9
HOH
HOH
3024
L
HOH
3025
9
HOH
HOH
3025
L
HOH
3026
9
HOH
HOH
3026
L
HOH
3027
9
HOH
HOH
3027
L
HOH
3028
9
HOH
HOH
3028
L
HOH
3029
9
HOH
HOH
3029
L
HOH
3030
9
HOH
HOH
3030
L
HOH
3031
9
HOH
HOH
3031
L
HOH
3032
9
HOH
HOH
3032
L
HOH
3033
9
HOH
HOH
3033
L
HOH
3034
9
HOH
HOH
3034
L
HOH
3035
9
HOH
HOH
3035
L
HOH
3036
9
HOH
HOH
3036
L
HOH
3037
9
HOH
HOH
3037
L
HOH
3038
9
HOH
HOH
3038
L
HOH
3039
9
HOH
HOH
3039
L
HOH
3040
9
HOH
HOH
3040
L
HOH
3041
9
HOH
HOH
3041
L
HOH
3042
9
HOH
HOH
3042
L
HOH
3043
9
HOH
HOH
3043
L
HOH
3044
9
HOH
HOH
3044
L
HOH
3045
9
HOH
HOH
3045
L
HOH
3046
9
HOH
HOH
3046
L
HOH
3047
9
HOH
HOH
3047
H
HOH
3048
9
HOH
HOH
3048
H
HOH
3049
9
HOH
HOH
3049
H
HOH
3050
9
HOH
HOH
3050
H
HOH
3051
9
HOH
HOH
3051
H
HOH
3052
9
HOH
HOH
3052
H
HOH
3053
9
HOH
HOH
3053
H
HOH
3054
9
HOH
HOH
3054
H
HOH
3055
9
HOH
HOH
3055
H
HOH
3056
9
HOH
HOH
3056
H
HOH
3057
9
HOH
HOH
3057
H
HOH
3058
9
HOH
HOH
3058
H
HOH
3059
9
HOH
HOH
3059
H
HOH
3060
9
HOH
HOH
3060
H
HOH
3061
9
HOH
HOH
3061
H
HOH
3062
9
HOH
HOH
3062
H
HOH
3063
9
HOH
HOH
3063
H
HOH
3064
9
HOH
HOH
3064
H
HOH
3065
9
HOH
HOH
3065
H
HOH
3066
9
HOH
HOH
3066
H
HOH
3067
9
HOH
HOH
3067
H
HOH
3068
9
HOH
HOH
3068
H
HOH
3069
9
HOH
HOH
3069
H
HOH
3070
9
HOH
HOH
3070
H
HOH
3071
9
HOH
HOH
3071
H
HOH
3072
9
HOH
HOH
3072
H
HOH
3073
9
HOH
HOH
3073
H
HOH
3074
9
HOH
HOH
3074
H
HOH
3075
9
HOH
HOH
3075
H
HOH
3076
9
HOH
HOH
3076
H
HOH
3077
9
HOH
HOH
3077
H
HOH
3078
9
HOH
HOH
3078
H
HOH
3079
9
HOH
HOH
3079
H
HOH
3080
9
HOH
HOH
3080
H
HOH
3081
9
HOH
HOH
3081
H
HOH
3082
9
HOH
HOH
3082
H
HOH
3083
9
HOH
HOH
3083
H
HOH
3084
9
HOH
HOH
3084
H
HOH
3085
9
HOH
HOH
3085
H
HOH
3086
9
HOH
HOH
3086
H
HOH
3087
9
HOH
HOH
3087
H
HOH
3088
9
HOH
HOH
3088
H
HOH
3089
9
HOH
HOH
3089
H
HOH
3090
9
HOH
HOH
3090
H
HOH
3091
9
HOH
HOH
3091
H
HOH
3092
9
HOH
HOH
3092
H
HOH
3093
9
HOH
HOH
3093
H
HOH
3094
9
HOH
HOH
3094
H
HOH
3095
9
HOH
HOH
3095
H
HOH
3096
9
HOH
HOH
3096
H
HOH
3097
9
HOH
HOH
3097
H
HOH
3098
9
HOH
HOH
3098
H
HOH
3099
9
HOH
HOH
3099
H
HOH
3100
9
HOH
HOH
3100
H
HOH
3101
9
HOH
HOH
3101
H
HOH
3102
9
HOH
HOH
3102
H
HOH
3103
9
HOH
HOH
3103
H
HOH
3104
9
HOH
HOH
3104
H
HOH
3105
9
HOH
HOH
3105
H
HOH
3106
9
HOH
HOH
3106
H
HOH
3107
9
HOH
HOH
3107
H
HOH
3108
9
HOH
HOH
3108
H
HOH
3109
9
HOH
HOH
3109
H
HOH
3110
9
HOH
HOH
3110
H
HOH
3111
9
HOH
HOH
3111
H
HOH
3112
9
HOH
HOH
3112
H
HOH
3113
9
HOH
HOH
3113
H
HOH
3114
9
HOH
HOH
3114
H
HOH
3115
9
HOH
HOH
3115
H
HOH
3116
9
HOH
HOH
3116
H
HOH
3117
9
HOH
HOH
3117
H
HOH
3118
9
HOH
HOH
3118
H
HOH
3119
9
HOH
HOH
3119
H
HOH
3120
9
HOH
HOH
3120
H
HOH
3121
9
HOH
HOH
3121
H
HOH
3122
9
HOH
HOH
3122
H
HOH
3123
9
HOH
HOH
3123
H
HOH
3124
9
HOH
HOH
3124
H
HOH
3125
9
HOH
HOH
3125
H
HOH
3126
9
HOH
HOH
3126
H
HOH
3127
9
HOH
HOH
3127
H
HOH
3128
9
HOH
HOH
3128
H
HOH
3129
9
HOH
HOH
3129
H
HOH
3130
9
HOH
HOH
3130
H
HOH
3131
9
HOH
HOH
3131
H
HOH
3132
9
HOH
HOH
3132
H
HOH
3133
9
HOH
HOH
3133
H
HOH
3134
9
HOH
HOH
3134
H
HOH
3135
9
HOH
HOH
3135
H
HOH
3136
9
HOH
HOH
3136
H
HOH
3137
9
HOH
HOH
3137
H
HOH
3138
9
HOH
HOH
3138
H
HOH
3139
9
HOH
HOH
3139
H
HOH
3140
9
HOH
HOH
3140
H
HOH
3141
9
HOH
HOH
3141
H
HOH
3142
9
HOH
HOH
3142
H
HOH
3143
9
HOH
HOH
3143
H
HOH
3144
9
HOH
HOH
3144
H
HOH
3145
9
HOH
HOH
3145
H
HOH
3146
9
HOH
HOH
3146
H
HOH
3147
9
HOH
HOH
3147
H
HOH
3148
9
HOH
HOH
3148
H
HOH
3149
9
HOH
HOH
3149
H
HOH
3150
9
HOH
HOH
3150
H
HOH
3151
9
HOH
HOH
3151
H
HOH
3152
9
HOH
HOH
3152
H
HOH
3153
9
HOH
HOH
3153
H
HOH
3154
9
HOH
HOH
3154
H
HOH
3155
9
HOH
HOH
3155
H
HOH
3156
9
HOH
HOH
3156
H
HOH
3157
9
HOH
HOH
3157
H
HOH
3158
9
HOH
HOH
3158
H
HOH
3159
9
HOH
HOH
3159
H
HOH
3160
9
HOH
HOH
3160
H
HOH
3161
9
HOH
HOH
3161
H
HOH
3162
9
HOH
HOH
3162
H
HOH
3163
9
HOH
HOH
3163
H
HOH
3164
9
HOH
HOH
3164
H
HOH
3165
9
HOH
HOH
3165
H
HOH
3166
9
HOH
HOH
3166
H
HOH
3167
9
HOH
HOH
3167
H
HOH
3168
9
HOH
HOH
3168
H
HOH
3169
9
HOH
HOH
3169
H
HOH
3170
9
HOH
HOH
3170
H
HOH
3171
9
HOH
HOH
3171
H
HOH
3172
9
HOH
HOH
3172
H
HOH
3173
9
HOH
HOH
3173
H
HOH
3174
9
HOH
HOH
3174
H
HOH
3175
9
HOH
HOH
3175
H
HOH
3176
9
HOH
HOH
3176
H
HOH
3177
9
HOH
HOH
3177
H
HOH
3178
9
HOH
HOH
3178
H
HOH
3179
9
HOH
HOH
3179
H
HOH
3180
9
HOH
HOH
3180
H
HOH
3181
9
HOH
HOH
3181
H
HOH
3182
9
HOH
HOH
3182
H
HOH
3183
9
HOH
HOH
3183
H
HOH
3184
9
HOH
HOH
3184
H
HOH
3185
9
HOH
HOH
3185
H
HOH
3186
9
HOH
HOH
3186
H
HOH
3187
9
HOH
HOH
3187
H
HOH
3188
9
HOH
HOH
3188
H
HOH
3189
9
HOH
HOH
3189
H
HOH
3190
9
HOH
HOH
3190
H
HOH
3191
9
HOH
HOH
3191
H
HOH
3192
9
HOH
HOH
3192
H
HOH
3193
9
HOH
HOH
3193
H
HOH
3194
9
HOH
HOH
3194
H
HOH
3195
9
HOH
HOH
3195
H
HOH
3196
9
HOH
HOH
3196
H
HOH
3197
9
HOH
HOH
3197
H
HOH
3198
9
HOH
HOH
3198
H
HOH
3199
9
HOH
HOH
3199
H
HOH
3200
9
HOH
HOH
3200
H
HOH
3201
9
HOH
HOH
3201
H
HOH
3202
9
HOH
HOH
3202
H
HOH
3203
9
HOH
HOH
3203
H
HOH
3204
9
HOH
HOH
3204
H
HOH
3205
9
HOH
HOH
3205
H
HOH
3206
9
HOH
HOH
3206
H
HOH
3207
9
HOH
HOH
3207
H
HOH
3208
9
HOH
HOH
3208
H
HOH
3209
9
HOH
HOH
3209
H
HOH
3210
9
HOH
HOH
3210
H
HOH
3211
9
HOH
HOH
3211
H
HOH
3212
9
HOH
HOH
3212
H
HOH
3213
9
HOH
HOH
3213
H
HOH
3214
9
HOH
HOH
3214
H
HOH
3215
9
HOH
HOH
3215
H
HOH
3216
9
HOH
HOH
3216
H
HOH
3217
9
HOH
HOH
3217
H
HOH
3218
9
HOH
HOH
3218
H
HOH
3219
9
HOH
HOH
3219
H
HOH
3220
9
HOH
HOH
3220
H
HOH
3221
9
HOH
HOH
3221
H
HOH
3222
9
HOH
HOH
3222
H
HOH
3223
9
HOH
HOH
3223
H
HOH
3224
9
HOH
HOH
3224
H
HOH
3225
9
HOH
HOH
3225
H
HOH
3226
9
HOH
HOH
3226
H
HOH
3227
9
HOH
HOH
3227
H
HOH
3228
9
HOH
HOH
3228
H
HOH
3229
9
HOH
HOH
3229
H
HOH
3230
9
HOH
HOH
3230
H
HOH
3231
9
HOH
HOH
3231
H
HOH
3232
9
HOH
HOH
3232
H
HOH
3233
9
HOH
HOH
3233
H
HOH
3234
9
HOH
HOH
3234
H
HOH
3235
9
HOH
HOH
3235
H
HOH
3236
9
HOH
HOH
3236
H
HOH
3237
9
HOH
HOH
3237
H
HOH
3238
9
HOH
HOH
3238
H
HOH
3239
9
HOH
HOH
3239
H
HOH
3240
9
HOH
HOH
3240
H
HOH
3241
9
HOH
HOH
3241
H
HOH
3242
9
HOH
HOH
3242
H
HOH
3243
9
HOH
HOH
3243
H
HOH
3244
9
HOH
HOH
3244
H
HOH
3245
9
HOH
HOH
3245
H
HOH
3246
9
HOH
HOH
3246
H
HOH
3247
9
HOH
HOH
3247
H
HOH
3248
9
HOH
HOH
3248
H
HOH
3249
9
HOH
HOH
3249
H
HOH
3250
9
HOH
HOH
3250
H
HOH
3251
9
HOH
HOH
3251
H
HOH
3252
9
HOH
HOH
3252
H
HOH
3253
9
HOH
HOH
3253
H
HOH
3254
9
HOH
HOH
3254
H
HOH
3255
9
HOH
HOH
3255
H
HOH
3256
9
HOH
HOH
3256
H
HOH
3257
9
HOH
HOH
3257
H
HOH
3258
9
HOH
HOH
3258
H
HOH
3259
9
HOH
HOH
3259
H
HOH
3260
9
HOH
HOH
3260
H
HOH
3261
9
HOH
HOH
3261
H
HOH
3262
9
HOH
HOH
3262
H
HOH
3263
9
HOH
HOH
3263
H
HOH
3264
9
HOH
HOH
3264
H
HOH
3265
9
HOH
HOH
3265
H
HOH
3266
9
HOH
HOH
3266
H
HOH
3267
9
HOH
HOH
3267
H
HOH
3268
9
HOH
HOH
3268
H
HOH
3269
9
HOH
HOH
3269
H
HOH
3270
9
HOH
HOH
3270
H
HOH
3271
9
HOH
HOH
3271
H
HOH
3272
9
HOH
HOH
3272
H
HOH
3273
9
HOH
HOH
3273
H
HOH
3274
9
HOH
HOH
3274
H
HOH
3275
9
HOH
HOH
3275
H
HOH
3276
9
HOH
HOH
3276
H
HOH
3277
9
HOH
HOH
3277
H
HOH
3278
9
HOH
HOH
3278
H
HOH
3279
9
HOH
HOH
3279
H
HOH
3280
9
HOH
HOH
3280
H
HOH
3281
9
HOH
HOH
3281
H
HOH
3282
9
HOH
HOH
3282
H
HOH
3283
9
HOH
HOH
3283
H
HOH
3284
9
HOH
HOH
3284
H
HOH
3285
9
HOH
HOH
3285
H
HOH
3286
9
HOH
HOH
3286
H
HOH
3287
9
HOH
HOH
3287
H
HOH
3288
9
HOH
HOH
3288
H
HOH
3289
9
HOH
HOH
3289
H
HOH
3290
9
HOH
HOH
3290
H
HOH
3291
9
HOH
HOH
3291
H
HOH
3292
9
HOH
HOH
3292
H
HOH
3293
9
HOH
HOH
3293
H
HOH
3294
9
HOH
HOH
3294
H
HOH
3295
9
HOH
HOH
3295
H
HOH
3296
9
HOH
HOH
3296
H
HOH
3297
9
HOH
HOH
3297
H
HOH
3298
9
HOH
HOH
3298
H
HOH
3299
9
HOH
HOH
3299
H
HOH
3300
9
HOH
HOH
3300
H
HOH
3301
9
HOH
HOH
3301
H
HOH
3302
9
HOH
HOH
3302
H
HOH
3303
9
HOH
HOH
3303
H
HOH
3304
9
HOH
HOH
3304
H
HOH
3305
9
HOH
HOH
3305
H
HOH
3306
9
HOH
HOH
3306
H
HOH
3307
9
HOH
HOH
3307
H
HOH
3308
9
HOH
HOH
3308
H
HOH
3309
9
HOH
HOH
3309
H
HOH
3310
9
HOH
HOH
3310
H
HOH
3311
9
HOH
HOH
3311
H
HOH
3312
9
HOH
HOH
3312
H
HOH
3313
9
HOH
HOH
3313
H
HOH
3314
9
HOH
HOH
3314
H
HOH
3315
9
HOH
HOH
3315
H
HOH
3316
9
HOH
HOH
3316
H
HOH
3317
9
HOH
HOH
3317
H
HOH
3318
9
HOH
HOH
3318
H
HOH
3319
9
HOH
HOH
3319
H
HOH
3320
9
HOH
HOH
3320
H
HOH
3321
9
HOH
HOH
3321
H
HOH
3322
9
HOH
HOH
3322
H
HOH
3323
9
HOH
HOH
3323
H
HOH
3324
9
HOH
HOH
3324
H
HOH
3325
9
HOH
HOH
3325
H
HOH
3326
9
HOH
HOH
3326
H
HOH
3327
9
HOH
HOH
3327
H
HOH
3328
9
HOH
HOH
3328
H
HOH
3329
9
HOH
HOH
3329
H
HOH
3330
9
HOH
HOH
3330
H
HOH
3331
9
HOH
HOH
3331
H
HOH
3332
9
HOH
HOH
3332
H
HOH
3333
9
HOH
HOH
3333
H
HOH
3334
9
HOH
HOH
3334
H
HOH
3335
9
HOH
HOH
3335
H
HOH
3336
9
HOH
HOH
3336
H
HOH
3337
9
HOH
HOH
3337
H
HOH
3338
9
HOH
HOH
3338
H
HOH
3339
9
HOH
HOH
3339
H
HOH
3340
9
HOH
HOH
3340
H
HOH
3341
9
HOH
HOH
3341
H
HOH
3342
9
HOH
HOH
3342
H
HOH
3343
9
HOH
HOH
3343
H
HOH
3344
9
HOH
HOH
3344
H
HOH
3345
9
HOH
HOH
3345
H
HOH
3346
9
HOH
HOH
3346
H
HOH
3347
9
HOH
HOH
3347
H
HOH
3348
9
HOH
HOH
3348
H
HOH
3349
9
HOH
HOH
3349
H
HOH
3350
9
HOH
HOH
3350
H
HOH
3351
9
HOH
HOH
3351
H
HOH
3352
9
HOH
HOH
3352
H
HOH
3353
9
HOH
HOH
3353
H
HOH
3354
9
HOH
HOH
3354
H
HOH
3355
9
HOH
HOH
3355
H
HOH
3356
9
HOH
HOH
3356
H
HOH
3357
9
HOH
HOH
3357
H
HOH
3358
9
HOH
HOH
3358
H
HOH
3359
9
HOH
HOH
3359
H
HOH
3360
9
HOH
HOH
3360
H
HOH
3361
9
HOH
HOH
3361
I
HOH
3362
9
HOH
HOH
3362
I
HOH
3363
9
HOH
HOH
3363
I
HOH
3364
9
HOH
HOH
3364
I
HOH
3365
9
HOH
HOH
3365
I
HOH
3366
9
HOH
HOH
3366
I
n
1
H
1
L
n
2
G
1
L
n
3
F
1
L
n
4
E
1
L
n
5
D
1
L
GLU
1
n
6
C
GLU
1
L
ALA
1
n
7
B
ALA
1
L
ASP
1
n
8
A
ASP
1
L
CYS
1
n
9
CYS
1
L
GLY
2
n
10
GLY
2
L
LEU
3
n
11
LEU
3
L
ARG
4
n
12
ARG
4
L
PRO
5
n
13
PRO
5
L
LEU
6
n
14
LEU
6
L
PHE
7
n
15
PHE
7
L
GLU
8
n
16
GLU
8
L
LYS
9
n
17
LYS
9
L
LYS
10
n
18
LYS
10
L
SER
11
n
19
SER
11
L
LEU
12
n
20
LEU
12
L
GLU
13
n
21
GLU
13
L
ASP
14
n
22
ASP
14
L
LYS
14
n
23
A
LYS
14
L
THR
14
n
24
B
THR
14
L
GLU
14
n
25
C
GLU
14
L
ARG
14
n
26
D
ARG
14
L
GLU
14
n
27
E
GLU
14
L
LEU
14
n
28
F
LEU
14
L
LEU
14
n
29
G
LEU
14
L
GLU
14
n
30
H
GLU
14
L
SER
14
n
31
I
SER
14
L
TYR
14
n
32
J
TYR
14
L
ILE
14
n
33
K
ILE
14
L
n
34
L
14
L
n
35
M
14
L
n
36
15
L
ILE
16
n
1
ILE
16
H
VAL
17
n
2
VAL
17
H
GLU
18
n
3
GLU
18
H
GLY
19
n
4
GLY
19
H
SER
20
n
5
SER
20
H
ASP
21
n
6
ASP
21
H
ALA
22
n
7
ALA
22
H
GLU
23
n
8
GLU
23
H
ILE
24
n
9
ILE
24
H
GLY
25
n
10
GLY
25
H
MET
26
n
11
MET
26
H
SER
27
n
12
SER
27
H
PRO
28
n
13
PRO
28
H
TRP
29
n
14
TRP
29
H
GLN
30
n
15
GLN
30
H
VAL
31
n
16
VAL
31
H
MET
32
n
17
MET
32
H
LEU
33
n
18
LEU
33
H
PHE
34
n
19
PHE
34
H
ARG
35
n
20
ARG
35
H
LYS
36
n
21
LYS
36
H
SER
36
n
22
A
SER
36
H
PRO
37
n
23
PRO
37
H
GLN
38
n
24
GLN
38
H
GLU
39
n
25
GLU
39
H
LEU
40
n
26
LEU
40
H
LEU
41
n
27
LEU
41
H
CYS
42
n
28
CYS
42
H
GLY
43
n
29
GLY
43
H
ALA
44
n
30
ALA
44
H
SER
45
n
31
SER
45
H
LEU
46
n
32
LEU
46
H
ILE
47
n
33
ILE
47
H
SER
48
n
34
SER
48
H
ASP
49
n
35
ASP
49
H
ARG
50
n
36
ARG
50
H
TRP
51
n
37
TRP
51
H
VAL
52
n
38
VAL
52
H
LEU
53
n
39
LEU
53
H
THR
54
n
40
THR
54
H
ALA
55
n
41
ALA
55
H
ALA
56
n
42
ALA
56
H
HIS
57
n
43
HIS
57
H
CYS
58
n
44
CYS
58
H
LEU
59
n
45
LEU
59
H
LEU
60
n
46
LEU
60
H
TYR
60
n
47
A
TYR
60
H
PRO
60
n
48
B
PRO
60
H
PRO
60
n
49
C
PRO
60
H
TRP
60
n
50
D
TRP
60
H
ASP
60
n
51
E
ASP
60
H
LYS
60
n
52
F
LYS
60
H
ASN
60
n
53
G
ASN
60
H
PHE
60
n
54
H
PHE
60
H
THR
60
n
55
I
THR
60
H
GLU
61
n
56
GLU
61
H
ASN
62
n
57
ASN
62
H
ASP
63
n
58
ASP
63
H
LEU
64
n
59
LEU
64
H
LEU
65
n
60
LEU
65
H
VAL
66
n
61
VAL
66
H
ARG
67
n
62
ARG
67
H
ILE
68
n
63
ILE
68
H
GLY
69
n
64
GLY
69
H
LYS
70
n
65
LYS
70
H
HIS
71
n
66
HIS
71
H
SER
72
n
67
SER
72
H
ARG
73
n
68
ARG
73
H
THR
74
n
69
THR
74
H
ARG
75
n
70
ARG
75
H
TYR
76
n
71
TYR
76
H
GLU
77
n
72
GLU
77
H
ARG
77
n
73
A
ARG
77
H
ASN
78
n
74
ASN
78
H
ILE
79
n
75
ILE
79
H
GLU
80
n
76
GLU
80
H
LYS
81
n
77
LYS
81
H
ILE
82
n
78
ILE
82
H
SER
83
n
79
SER
83
H
MET
84
n
80
MET
84
H
LEU
85
n
81
LEU
85
H
GLU
86
n
82
GLU
86
H
LYS
87
n
83
LYS
87
H
ILE
88
n
84
ILE
88
H
TYR
89
n
85
TYR
89
H
ILE
90
n
86
ILE
90
H
HIS
91
n
87
HIS
91
H
PRO
92
n
88
PRO
92
H
ARG
93
n
89
ARG
93
H
TYR
94
n
90
TYR
94
H
ASN
95
n
91
ASN
95
H
TRP
96
n
92
TRP
96
H
ARG
97
n
93
ARG
97
H
GLU
97
n
94
A
GLU
97
H
ASN
98
n
95
ASN
98
H
LEU
99
n
96
LEU
99
H
ASP
100
n
97
ASP
100
H
ARG
101
n
98
ARG
101
H
ASP
102
n
99
ASP
102
H
ILE
103
n
100
ILE
103
H
ALA
104
n
101
ALA
104
H
LEU
105
n
102
LEU
105
H
MET
106
n
103
MET
106
H
LYS
107
n
104
LYS
107
H
LEU
108
n
105
LEU
108
H
LYS
109
n
106
LYS
109
H
LYS
110
n
107
LYS
110
H
PRO
111
n
108
PRO
111
H
VAL
112
n
109
VAL
112
H
ALA
113
n
110
ALA
113
H
PHE
114
n
111
PHE
114
H
SER
115
n
112
SER
115
H
ASP
116
n
113
ASP
116
H
TYR
117
n
114
TYR
117
H
ILE
118
n
115
ILE
118
H
HIS
119
n
116
HIS
119
H
PRO
120
n
117
PRO
120
H
VAL
121
n
118
VAL
121
H
CYS
122
n
119
CYS
122
H
LEU
123
n
120
LEU
123
H
PRO
124
n
121
PRO
124
H
ASP
125
n
122
ASP
125
H
ARG
126
n
123
ARG
126
H
GLU
127
n
124
GLU
127
H
THR
128
n
125
THR
128
H
ALA
129
n
126
ALA
129
H
ALA
129
n
127
A
ALA
129
H
SER
129
n
128
B
SER
129
H
LEU
129
n
129
C
LEU
129
H
LEU
130
n
130
LEU
130
H
GLN
131
n
131
GLN
131
H
ALA
132
n
132
ALA
132
H
GLY
133
n
133
GLY
133
H
TYR
134
n
134
TYR
134
H
LYS
135
n
135
LYS
135
H
GLY
136
n
136
GLY
136
H
ARG
137
n
137
ARG
137
H
VAL
138
n
138
VAL
138
H
THR
139
n
139
THR
139
H
GLY
140
n
140
GLY
140
H
TRP
141
n
141
TRP
141
H
GLY
142
n
142
GLY
142
H
ASN
143
n
143
ASN
143
H
LEU
144
n
144
LEU
144
H
LYS
145
n
145
LYS
145
H
GLU
146
n
146
GLU
146
H
THR
147
n
147
THR
147
H
n
148
148
H
n
149
149
H
n
150
A
149
H
n
151
B
149
H
n
152
C
149
H
n
153
D
149
H
n
154
E
149
H
GLY
150
n
155
GLY
150
H
GLN
151
n
156
GLN
151
H
PRO
152
n
157
PRO
152
H
SER
153
n
158
SER
153
H
VAL
154
n
159
VAL
154
H
LEU
155
n
160
LEU
155
H
GLN
156
n
161
GLN
156
H
VAL
157
n
162
VAL
157
H
VAL
158
n
163
VAL
158
H
ASN
159
n
164
ASN
159
H
LEU
160
n
165
LEU
160
H
PRO
161
n
166
PRO
161
H
ILE
162
n
167
ILE
162
H
VAL
163
n
168
VAL
163
H
GLU
164
n
169
GLU
164
H
ARG
165
n
170
ARG
165
H
PRO
166
n
171
PRO
166
H
VAL
167
n
172
VAL
167
H
CYS
168
n
173
CYS
168
H
LYS
169
n
174
LYS
169
H
ASP
170
n
175
ASP
170
H
SER
171
n
176
SER
171
H
THR
172
n
177
THR
172
H
ARG
173
n
178
ARG
173
H
ILE
174
n
179
ILE
174
H
ARG
175
n
180
ARG
175
H
ILE
176
n
181
ILE
176
H
THR
177
n
182
THR
177
H
ASP
178
n
183
ASP
178
H
ASN
179
n
184
ASN
179
H
MET
180
n
185
MET
180
H
PHE
181
n
186
PHE
181
H
CYS
182
n
187
CYS
182
H
ALA
183
n
188
ALA
183
H
GLY
184
n
189
GLY
184
H
TYR
184
n
190
A
TYR
184
H
LYS
185
n
191
LYS
185
H
PRO
186
n
192
PRO
186
H
ASP
186
n
193
A
ASP
186
H
GLU
186
n
194
B
GLU
186
H
GLY
186
n
195
C
GLY
186
H
LYS
186
n
196
D
LYS
186
H
ARG
187
n
197
ARG
187
H
GLY
188
n
198
GLY
188
H
ASP
189
n
199
ASP
189
H
ALA
190
n
200
ALA
190
H
CYS
191
n
201
CYS
191
H
GLU
192
n
202
GLU
192
H
GLY
193
n
203
GLY
193
H
ASP
194
n
204
ASP
194
H
SER
195
n
205
SER
195
H
GLY
196
n
206
GLY
196
H
GLY
197
n
207
GLY
197
H
PRO
198
n
208
PRO
198
H
PHE
199
n
209
PHE
199
H
VAL
200
n
210
VAL
200
H
MET
201
n
211
MET
201
H
LYS
202
n
212
LYS
202
H
SER
203
n
213
SER
203
H
PRO
204
n
214
PRO
204
H
PHE
204
n
215
A
PHE
204
H
ASN
204
n
216
B
ASN
204
H
ASN
205
n
217
ASN
205
H
ARG
206
n
218
ARG
206
H
TRP
207
n
219
TRP
207
H
TYR
208
n
220
TYR
208
H
GLN
209
n
221
GLN
209
H
MET
210
n
222
MET
210
H
GLY
211
n
223
GLY
211
H
ILE
212
n
224
ILE
212
H
VAL
213
n
225
VAL
213
H
SER
214
n
226
SER
214
H
TRP
215
n
227
TRP
215
H
GLY
216
n
228
GLY
216
H
GLU
217
n
229
GLU
217
H
GLY
219
n
230
GLY
219
H
CYS
220
n
231
CYS
220
H
ASP
221
n
232
ASP
221
H
ARG
221
n
233
A
ARG
221
H
ASP
222
n
234
ASP
222
H
GLY
223
n
235
GLY
223
H
LYS
224
n
236
LYS
224
H
TYR
225
n
237
TYR
225
H
GLY
226
n
238
GLY
226
H
PHE
227
n
239
PHE
227
H
TYR
228
n
240
TYR
228
H
THR
229
n
241
THR
229
H
HIS
230
n
242
HIS
230
H
VAL
231
n
243
VAL
231
H
PHE
232
n
244
PHE
232
H
ARG
233
n
245
ARG
233
H
LEU
234
n
246
LEU
234
H
LYS
235
n
247
LYS
235
H
LYS
236
n
248
LYS
236
H
TRP
237
n
249
TRP
237
H
ILE
238
n
250
ILE
238
H
GLN
239
n
251
GLN
239
H
LYS
240
n
252
LYS
240
H
VAL
241
n
253
VAL
241
H
ILE
242
n
254
ILE
242
H
ASP
243
n
255
ASP
243
H
GLN
244
n
256
GLN
244
H
PHE
245
n
257
PHE
245
H
GLY
246
n
258
GLY
246
H
n
259
247
H
n
1
553
I
n
2
554
I
ASP
555
n
3
ASP
555
I
PHE
556
n
4
PHE
556
I
GLU
557
n
5
GLU
557
I
GLU
558
n
6
GLU
558
I
ILE
559
n
7
ILE
559
I
PRO
560
n
8
PRO
560
I
GLU
561
n
9
GLU
561
I
GLU
562
n
10
GLU
562
I
TYS
563
n
11
TYS
563
I
LEU
564
n
12
LEU
564
I
GLN
565
n
13
GLN
565
I
1.3884
-0.8253
0.3047
1.0841
-0.1775
0.8725
0.1203
0.1292
-0.0530
-0.0603
-0.0911
0.0077
0.0909
0.0752
-0.0273
0.0626
0.0258
-0.0037
0.0603
-0.0133
0.0575
refined
14.0190
-1.0728
19.6849
X-RAY DIFFRACTION
0.1012
0.0512
-0.0658
0.0829
-0.0782
0.0844
0.1614
0.3681
-0.0713
-0.3433
-0.0904
-0.0505
-0.0413
0.0386
-0.0639
0.4081
0.1888
0.0438
0.5139
-0.0644
0.1425
refined
12.0950
-1.1737
-3.5256
X-RAY DIFFRACTION
0.2146
-0.3105
0.0415
0.4610
0.0034
0.3346
0.0030
-0.0675
0.0081
0.0705
-0.0566
0.0743
-0.1163
-0.1412
0.0402
0.0911
0.0403
0.0117
0.0899
-0.0011
0.0991
refined
0.0572
11.1219
23.7824
X-RAY DIFFRACTION
H
16
H
246
X-RAY DIFFRACTION
1
(chain H and resid 16:246)
I
555
I
565
X-RAY DIFFRACTION
2
(chain I and resid 555:565)
L
1
L
14
X-RAY DIFFRACTION
3
(chain L and resid 1C:14K)
author_and_software_defined_assembly
PISA
3
trimeric
3390
-14
12890
G
H
ASN
60
GLYCOSYLATION SITE
B
ASN
53
ASN
I
TYS
563
O-SULFO-L-TYROSINE
C
TYS
11
TYR
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
H
N
SER
20
B
N
SER
5
H
O
VAL
157
B
O
VAL
162
H
O
VAL
158
B
O
VAL
163
H
N
VAL
138
B
N
VAL
138
H
N
ARG
137
B
N
ARG
137
H
O
VAL
200
B
O
VAL
210
H
N
MET
201
B
N
MET
211
H
O
TYR
208
B
O
TYR
220
H
N
TRP
215
B
N
TRP
227
H
O
PHE
227
B
O
PHE
239
H
O
TYR
228
B
O
TYR
240
H
N
PHE
181
B
N
PHE
186
H
N
LEU
33
B
N
LEU
18
H
O
LEU
41
B
O
LEU
27
H
N
SER
45
B
N
SER
31
H
O
LEU
53
B
O
LEU
39
H
N
THR
54
B
N
THR
40
H
O
ALA
104
B
O
ALA
101
H
O
LYS
107
B
O
LYS
104
H
N
GLU
86
B
N
GLU
82
H
O
LYS
81
B
O
LYS
77
H
N
ILE
68
B
N
ILE
63
H
O
LEU
65
B
O
LEU
60
H
N
PHE
34
B
N
PHE
19
A
H
N
TYR
60
B
N
TYR
47
F
H
O
LYS
60
B
O
LYS
52
1
H
HOH
3100
K
HOH
C
1
L
CG
GLU
1
A
CG
GLU
6
1
Y
C
1
L
CD
GLU
1
A
CD
GLU
6
1
Y
C
1
L
OE1
GLU
1
A
OE1
GLU
6
1
Y
C
1
L
OE2
GLU
1
A
OE2
GLU
6
1
Y
A
1
H
OG
SER
36
B
OG
SER
22
1
Y
1
H
CG
LYS
110
B
CG
LYS
107
1
Y
1
H
CD
LYS
110
B
CD
LYS
107
1
Y
1
H
CE
LYS
110
B
CE
LYS
107
1
Y
1
H
NZ
LYS
110
B
NZ
LYS
107
1
Y
A
1
H
CG
ASP
186
B
CG
ASP
193
1
Y
A
1
H
OD1
ASP
186
B
OD1
ASP
193
1
Y
A
1
H
OD2
ASP
186
B
OD2
ASP
193
1
Y
1
H
CG
LYS
236
B
CG
LYS
248
1
Y
1
H
CD
LYS
236
B
CD
LYS
248
1
Y
1
H
CE
LYS
236
B
CE
LYS
248
1
Y
1
H
NZ
LYS
236
B
NZ
LYS
248
1
Y
1
I
CG
GLU
558
C
CG
GLU
6
1
Y
1
I
CD
GLU
558
C
CD
GLU
6
1
Y
1
I
OE1
GLU
558
C
OE1
GLU
6
1
Y
1
I
OE2
GLU
558
C
OE2
GLU
6
1
Y
1
I
CG
GLN
565
C
CG
GLN
13
1
Y
1
I
CD
GLN
565
C
CD
GLN
13
1
Y
1
I
OE1
GLN
565
C
OE1
GLN
13
1
Y
1
I
NE2
GLN
565
C
NE2
GLN
13
1
Y
H
1
L
THR
1
A
THR
1
1
Y
G
1
L
PHE
1
A
PHE
2
1
Y
F
1
L
GLY
1
A
GLY
3
1
Y
E
1
L
SER
1
A
SER
4
1
Y
D
1
L
GLY
1
A
GLY
5
1
Y
L
1
L
ASP
14
A
ASP
34
1
Y
M
1
L
GLY
14
A
GLY
35
1
Y
1
L
ARG
15
A
ARG
36
1
Y
1
H
TRP
148
B
TRP
148
1
Y
1
H
THR
149
B
THR
149
1
Y
A
1
H
ALA
149
B
ALA
150
1
Y
B
1
H
ASN
149
B
ASN
151
1
Y
C
1
H
VAL
149
B
VAL
152
1
Y
D
1
H
GLY
149
B
GLY
153
1
Y
E
1
H
LYS
149
B
LYS
154
1
Y
1
H
GLU
247
B
GLU
259
1
Y
1
I
ASN
553
C
ASN
1
1
Y
1
I
GLY
554
C
GLY
2
1
Y
1
H
H
O
O
HOH
HOH
3109
3156
1.95
1
L
L
O
O
HOH
HOH
3041
3044
2.00
1
H
H
O
O
HOH
HOH
3134
3137
2.03
1
L
H
O
O
HOH
HOH
3045
3157
2.04
1
H
H
O
O
HOH
HOH
3172
3175
2.12
1
H
H
O
O
HOH
HOH
3127
3136
2.14
1
L
H
O
O
HOH
HOH
3046
3241
2.16
1
L
L
O
O
HOH
HOH
3042
3043
2.19
1
L
PHE
7
-130.93
-89.77
A
1
H
TYR
60
-154.71
83.35
G
1
H
ASN
60
-158.42
82.01
1
H
HIS
71
-128.90
-62.08
1
H
ILE
79
-127.11
-62.69
A
1
H
GLU
97
-116.45
-71.03
1
H
SER
195
-37.70
133.63
83.370
20.6408
5.680
2.3727
0.0000
-2.3632
-1.5382
0.0000
-0.8346
0.1650
0.1552
0.1558
0.1558
1.520
35.666
2584
53637
51053
5.06
94.83
1.000
0.240
0.9134
0.15
Random
1
Free R
MOLECULAR REPLACEMENT
15.6100
0.83
1.10
1H8D
Engh & Huber
FLAT BULK SOLVENT MODEL
59.212
0.400
1.520
35.666
366
2760
54
0
2340
0.008
2529
1.121
3424
0.075
358
0.005
438
15.531
1003
0.2095
0.2075
1.5743
230
4315
4545
10
85.0000
0.2135
0.1914
1.6374
264
4554
4818
10
90.0000
0.2071
0.1778
1.7119
242
4688
4930
10
92.0000
0.1770
0.1573
1.8021
244
4755
4999
10
93.0000
0.1664
0.1496
1.9150
246
4905
5151
10
95.0000
0.1500
0.1435
2.0629
242
4959
5201
10
97.0000
0.1641
0.1466
2.2705
274
5025
5299
10
98.0000
0.1762
0.1566
2.5989
263
5051
5314
10
99.0000
0.1742
0.1628
3.2740
281
5081
5362
10
99.0000
0.1404
0.1430
35.6756
298
5136
5434
10
99.0000
1.52
50
3QTO
53781
53781
0.065
1
17
3.1
99.8
1.52
1.55
2.2
2645
0.497
1
2.9
99.5
data collection
MAR345dtb
phasing
PHASER
refinement
PHENIX
(phenix.refine: 1.6.4_486)
data reduction
HKL-2000
data scaling
HKL-2000
Thrombin Inhibition by Pyridin Derivatives
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
7
N
N
8
N
N
8
N
N
9
N
N
9
N
N
9
N
N
L
PHE
7
A
PHE
15
HELX_P
L
SER
11
A
SER
19
5
1
5
L
THR
14
A
THR
24
HELX_P
L
TYR
14
A
TYR
32
1
2
9
B
J
H
ALA
55
B
ALA
41
HELX_P
H
CYS
58
B
CYS
44
5
3
4
H
PRO
60
B
PRO
48
HELX_P
H
ASP
60
B
ASP
51
5
4
4
B
E
H
THR
60
B
THR
55
HELX_P
H
ASN
62
B
ASN
57
5
5
3
I
H
ASP
125
B
ASP
122
HELX_P
H
LEU
130
B
LEU
130
1
6
9
H
GLU
164
B
GLU
169
HELX_P
H
SER
171
B
SER
176
1
7
8
H
LYS
185
B
LYS
191
HELX_P
H
GLY
186
B
GLY
195
5
8
5
C
H
LEU
234
B
LEU
246
HELX_P
H
GLY
246
B
GLY
258
1
9
13
I
PRO
560
C
PRO
8
HELX_P
I
LEU
564
C
LEU
12
5
10
5
disulf
2.048
L
CYS
1
A
SG
CYS
9
1_555
H
CYS
122
B
SG
CYS
119
1_555
disulf
2.037
H
CYS
42
B
SG
CYS
28
1_555
H
CYS
58
B
SG
CYS
44
1_555
disulf
2.029
H
CYS
168
B
SG
CYS
173
1_555
H
CYS
182
B
SG
CYS
187
1_555
disulf
2.031
H
CYS
191
B
SG
CYS
201
1_555
H
CYS
220
B
SG
CYS
231
1_555
covale
1.425
one
G
G
N-Glycosylation
H
ASN
60
B
ND2
ASN
53
1_555
H
NAG
260
D
C1
NAG
1_555
covale
1.329
both
I
GLU
562
C
C
GLU
10
1_555
I
TYS
563
C
N
TYS
11
1_555
covale
1.327
both
I
TYS
563
C
C
TYS
11
1_555
I
LEU
564
C
N
LEU
12
1_555
HYDROLASE/HYDROLASE INHIBITOR
Serine Protease, Kringle, Hydrolase, Blood Coagulation, Blood Clotting, Convertion of Fibrinogen to Fibrin, Cleavage on Pairs of Basic Residues, Blood Clotting Inhibitor, Thrombin Inhibitor, Glycosylation, Blood, HYDROLASE-HYDROLASE INHIBITOR complex
H
SER
36
B
SER
22
A
1
H
PRO
37
B
PRO
23
-3.06
THRB_HUMAN
UNP
1
328
P00734
TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR
THRB_HUMAN
UNP
2
364
P00734
IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM
LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL
QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY
THVFRLKKWIQKVIDQFGE
HIRV2_HIRME
UNP
3
60
P09945
NGDFEEIPEEYLQ
328
363
3QTO
1
15
P00734
H
L
1
1
36
364
622
3QTO
16
247
P00734
H
2
1
259
60
72
3QTO
553
565
P09945
I
3
1
13
7
7
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
H
SER
20
B
SER
5
H
ASP
21
B
ASP
6
H
GLN
156
B
GLN
161
H
PRO
161
B
PRO
166
H
LYS
135
B
LYS
135
H
GLY
140
B
GLY
140
H
PRO
198
B
PRO
208
H
LYS
202
B
LYS
212
H
TRP
207
B
TRP
219
H
TRP
215
B
TRP
227
H
GLY
226
B
GLY
238
H
HIS
230
B
HIS
242
H
MET
180
B
MET
185
H
ALA
183
B
ALA
188
H
GLN
30
B
GLN
15
H
ARG
35
B
ARG
20
H
GLU
39
B
GLU
25
H
LEU
46
B
LEU
32
H
TRP
51
B
TRP
37
H
THR
54
B
THR
40
H
ALA
104
B
ALA
101
H
LEU
108
B
LEU
105
H
LYS
81
B
LYS
77
H
ILE
90
B
ILE
86
H
LEU
64
B
LEU
59
H
ILE
68
B
ILE
63
H
GLN
30
B
GLN
15
H
ARG
35
B
ARG
20
H
LEU
60
B
LEU
46
H
TYR
60
B
TYR
47
A
H
LYS
60
B
LYS
52
H
ASN
60
B
ASN
53
F
G
5
C 1 2 1