0.012266
0.000000
0.002418
0.000000
0.026339
0.000000
0.000000
0.000000
0.014816
0.00000
0.00000
0.00000
Porebski, P.J.
Klimecka, M.M.
Chruszcz, M.
Murzyn, K.
Minor, C.
Joachimiak, A.
0000-0001-7075-7090
Minor, W.
Midwest Center for Structural Genomics (MCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
101.15
90.00
81.526
37.967
68.795
C8 H17 N O2
159.226
8-aminooctanoic acid
8-aminocaprylic acid
non-polymer
C10 H15 N5 O10 P2
427.201
n
ADENOSINE-5'-DIPHOSPHATE
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
N
O
N
3
N
O
N
4
N
C
N
5
N
C
N
6
N
C
N
7
N
C
N
8
N
C
N
9
N
C
N
10
N
C
N
11
N
C
N
12
N
H
N
13
N
H
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
P
N
30
N
O
N
31
N
O
N
32
N
O
N
33
S
P
N
34
N
O
N
35
N
O
N
36
N
O
N
37
N
O
N
38
N
C
N
39
R
C
N
40
N
O
N
41
S
C
N
42
N
O
N
43
R
C
N
44
N
O
N
45
R
C
Y
46
N
N
Y
47
N
C
Y
48
N
N
Y
49
N
C
Y
50
N
C
N
51
N
N
Y
52
N
N
Y
53
N
C
Y
54
N
N
Y
55
N
C
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
N
N
72
S
C
N
73
N
C
N
74
N
O
N
75
N
C
N
76
N
O
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
N
N
85
S
C
N
86
N
C
N
87
N
O
N
88
N
C
N
89
N
C
N
90
N
C
N
91
N
N
N
92
N
C
N
93
N
N
N
94
N
N
N
95
N
O
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
N
N
112
S
C
N
113
N
C
N
114
N
O
N
115
N
C
N
116
N
C
N
117
N
O
N
118
N
N
N
119
N
O
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
N
N
129
S
C
N
130
N
C
N
131
N
O
N
132
N
C
N
133
N
C
N
134
N
O
N
135
N
O
N
136
N
O
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
N
N
145
R
C
N
146
N
C
N
147
N
O
N
148
N
C
N
149
N
S
N
150
N
O
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
C
N
159
N
O
N
160
N
C
N
161
N
O
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
N
N
169
S
C
N
170
N
C
N
171
N
O
N
172
N
C
N
173
N
C
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
N
N
189
S
C
N
190
N
C
N
191
N
O
N
192
N
C
N
193
N
C
N
194
N
C
N
195
N
O
N
196
N
O
N
197
N
O
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
N
N
208
N
C
N
209
N
C
N
210
N
O
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
N
N
218
S
C
N
219
N
C
N
220
N
O
N
221
N
C
Y
222
N
C
Y
223
N
N
Y
224
N
C
Y
225
N
C
Y
226
N
N
N
227
N
O
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
N
N
242
S
C
N
243
N
C
N
244
N
O
N
245
S
C
N
246
N
C
N
247
N
C
N
248
N
C
N
249
N
O
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
N
N
264
S
C
N
265
N
C
N
266
N
O
N
267
N
C
N
268
N
C
N
269
N
C
N
270
N
C
N
271
N
O
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
N
N
286
S
C
N
287
N
C
N
288
N
O
N
289
N
C
N
290
N
C
N
291
N
C
N
292
N
C
N
293
N
N
N
294
N
O
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
N
N
311
S
C
N
312
N
C
N
313
N
O
N
314
N
C
N
315
N
C
N
316
N
S
N
317
N
C
N
318
N
O
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
MG
N
331
N
N
N
332
S
C
N
333
N
C
N
334
N
O
N
335
N
C
Y
336
N
C
Y
337
N
C
Y
338
N
C
Y
339
N
C
Y
340
N
C
Y
341
N
C
N
342
N
O
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
P
N
355
N
O
N
356
N
O
N
357
N
O
N
358
N
O
N
359
N
N
N
360
S
C
N
361
N
C
N
362
N
O
N
363
N
C
N
364
N
C
N
365
N
C
N
366
N
O
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
N
N
377
S
C
N
378
N
C
N
379
N
O
N
380
N
C
N
381
N
O
N
382
N
O
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
N
N
391
S
C
N
392
N
C
N
393
N
O
N
394
R
C
N
395
N
O
N
396
N
C
N
397
N
O
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
N
N
408
S
C
N
409
N
C
N
410
N
O
N
411
N
C
Y
412
N
C
Y
413
N
C
Y
414
N
C
Y
415
N
C
Y
416
N
C
Y
417
N
C
N
418
N
O
N
419
N
O
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
N
N
432
S
C
N
433
N
C
N
434
N
O
N
435
N
C
N
436
N
C
N
437
N
C
N
438
N
O
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
doub
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
doub
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
doub
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
Y
57
N
sing
Y
58
N
sing
Y
59
N
doub
N
60
N
sing
Y
61
N
sing
Y
62
N
sing
Y
63
N
doub
N
64
N
sing
Y
65
N
doub
N
66
N
sing
N
67
N
sing
Y
68
N
sing
Y
69
N
doub
N
70
N
sing
Y
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
doub
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
doub
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
doub
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
doub
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
doub
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
doub
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
doub
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
doub
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
Y
220
N
sing
Y
221
N
doub
Y
222
N
doub
N
223
N
sing
Y
224
N
sing
N
225
N
sing
Y
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
doub
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
doub
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
doub
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
doub
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
Y
328
N
doub
Y
329
N
sing
Y
330
N
sing
N
331
N
sing
Y
332
N
doub
N
333
N
sing
Y
334
N
doub
N
335
N
sing
Y
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
doub
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
doub
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
doub
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
doub
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
Y
401
N
doub
Y
402
N
sing
Y
403
N
sing
N
404
N
sing
Y
405
N
doub
N
406
N
sing
Y
407
N
doub
N
408
N
sing
Y
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
doub
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
UK
Febs J.
1742-464X
279
1093
1105
10.1111/j.1742-4658.2012.08506.x
22284390
Structural characterization of Helicobacter pylori dethiobiotin synthetase reveals differences between family members.
2012
0000-0001-7075-7090
10.2210/pdb3qxh/pdb
pdb_00003qxh
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
MIRROR
CCD
2008-07-11
SBC-3
SI-111 CHANNEL
SINGLE WAVELENGTH
M
x-ray
1
0.9793
1.0
19-BM
APS
0.9793
0.9793
SYNCHROTRON
APS BEAMLINE 19-BM
27148.088
Dethiobiotin synthetase
6.3.3.3
1
man
polymer
159.226
8-aminooctanoic acid
1
syn
non-polymer
427.201
ADENOSINE-5'-DIPHOSPHATE
1
syn
non-polymer
24.305
MAGNESIUM ION
2
syn
non-polymer
94.971
PHOSPHATE ION
1
syn
non-polymer
62.068
1,2-ETHANEDIOL
5
syn
non-polymer
18.015
water
353
nat
water
DTB synthetase, DTBS, Dethiobiotin synthase
no
no
MGSSHHHHHHSSGRENLYFQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAINHSSDAHLFLQDN
RLLDRSLTLKDISFYRYHKVSAPLIAQQEEDPNAPIDTDNLTQRLHNFTKTYDLVIVEGAGGLCVPITLEENMLDFALKL
KAKMLLISHDNLGLINDCLLNDFLLKSHQLDYKIAINLKGNNTAFHSISLPYIELFNTRSNNPIVIFQQSLKVLMSFALK
GS
MGSSHHHHHHSSGRENLYFQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAINHSSDAHLFLQDN
RLLDRSLTLKDISFYRYHKVSAPLIAQQEEDPNAPIDTDNLTQRLHNFTKTYDLVIVEGAGGLCVPITLEENMLDFALKL
KAKMLLISHDNLGLINDCLLNDFLLKSHQLDYKIAINLKGNNTAFHSISLPYIELFNTRSNNPIVIFQQSLKVLMSFALK
GS
A
APC5858
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Campylobacter pylori
26695
sample
bioD, hp0029, HP_0029
85962
Helicobacter pylori
511693
Escherichia coli
Bl21 Gold(de3) Magic
Plasmid
p11
1
1.92
36.07
VAPOR DIFFUSION, HANGING DROP
5.5
20% PEG3350; 150 MM NH4NO3; 100 MM BIS-TRIS; SOAKED WITH 10 MM ATP, 10 MM MGCL2, 10 MM 8-AMINOOCTANOIC ACID; IN SITU PROTEOLYSIS - CHYMOTRYPSIN, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
Midwest Center for Structural Genomics
MCSG
PSI:Biology
audit_author
citation_author
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Database references
Database references
Database references
Derived calculations
Structure summary
Data collection
Refinement description
1
0
2011-03-30
1
1
2011-07-13
1
2
2012-03-28
1
3
2013-03-27
1
4
2022-04-13
1
5
2023-09-13
_audit_author.identifier_ORCID
_citation_author.identifier_ORCID
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Crystal structure of dethiobiotin synthetase (bioD) from Helicobacter pylori
Crystal structure of dethiobiotin synthetase (BioD) from Helicobacter pylori cocrystallized with ATP
Crystal structure of dethiobiotin synthetase (BioD) from Helicobacter pylori complexed with ATP
Crystal structure of dethiobiotin synthetase (BioD) from Helicobacter pylori complexed with GTP
Crystal structure of dethiobiotin synthetase (BioD) from Helicobacter pylori complexed with ANP
Crystal structure of dethiobiotin synthetase (BioD) from Helicobacter pylori complexed with GDP and 8-aminocaprylic acid
Crystal structure of dethiobiotin synthetase (BioD) from Helicobacter pylori complexed with GDP
Y
RCSB
Y
RCSB
2011-03-01
REL
REL
8AC
8-aminooctanoic acid
ADP
ADENOSINE-5'-DIPHOSPHATE
MG
MAGNESIUM ION
PO4
PHOSPHATE ION
EDO
1,2-ETHANEDIOL
HOH
water
2QMO
PDB entry 2QMO
PDB
experimental model
8AC
1
2
8AC
8AC
221
A
ADP
1
3
ADP
ADP
222
A
MG
2
4
MG
MG
223
A
MG
3
4
MG
MG
224
A
PO4
4
5
PO4
PO4
225
A
EDO
1
6
EDO
EDO
226
A
EDO
6
6
EDO
EDO
227
A
EDO
2
6
EDO
EDO
228
A
EDO
3
6
EDO
EDO
229
A
EDO
4
6
EDO
EDO
230
A
HOH
231
7
HOH
HOH
231
A
HOH
1
7
HOH
HOH
232
A
HOH
2
7
HOH
HOH
233
A
HOH
234
7
HOH
HOH
234
A
HOH
235
7
HOH
HOH
235
A
HOH
3
7
HOH
HOH
236
A
HOH
4
7
HOH
HOH
237
A
HOH
238
7
HOH
HOH
238
A
HOH
239
7
HOH
HOH
239
A
HOH
240
7
HOH
HOH
240
A
HOH
241
7
HOH
HOH
241
A
HOH
5
7
HOH
HOH
242
A
HOH
6
7
HOH
HOH
243
A
HOH
7
7
HOH
HOH
244
A
HOH
245
7
HOH
HOH
245
A
HOH
8
7
HOH
HOH
246
A
HOH
9
7
HOH
HOH
247
A
HOH
248
7
HOH
HOH
248
A
HOH
249
7
HOH
HOH
249
A
HOH
250
7
HOH
HOH
250
A
HOH
251
7
HOH
HOH
251
A
HOH
252
7
HOH
HOH
252
A
HOH
253
7
HOH
HOH
253
A
HOH
254
7
HOH
HOH
254
A
HOH
255
7
HOH
HOH
255
A
HOH
10
7
HOH
HOH
256
A
HOH
11
7
HOH
HOH
257
A
HOH
258
7
HOH
HOH
258
A
HOH
259
7
HOH
HOH
259
A
HOH
260
7
HOH
HOH
260
A
HOH
12
7
HOH
HOH
261
A
HOH
262
7
HOH
HOH
262
A
HOH
263
7
HOH
HOH
263
A
HOH
264
7
HOH
HOH
264
A
HOH
265
7
HOH
HOH
265
A
HOH
266
7
HOH
HOH
266
A
HOH
267
7
HOH
HOH
267
A
HOH
268
7
HOH
HOH
268
A
HOH
269
7
HOH
HOH
269
A
HOH
13
7
HOH
HOH
270
A
HOH
271
7
HOH
HOH
271
A
HOH
14
7
HOH
HOH
272
A
HOH
273
7
HOH
HOH
273
A
HOH
274
7
HOH
HOH
274
A
HOH
275
7
HOH
HOH
275
A
HOH
15
7
HOH
HOH
276
A
HOH
277
7
HOH
HOH
277
A
HOH
278
7
HOH
HOH
278
A
HOH
279
7
HOH
HOH
279
A
HOH
17
7
HOH
HOH
280
A
HOH
281
7
HOH
HOH
281
A
HOH
282
7
HOH
HOH
282
A
HOH
283
7
HOH
HOH
283
A
HOH
284
7
HOH
HOH
284
A
HOH
285
7
HOH
HOH
285
A
HOH
286
7
HOH
HOH
286
A
HOH
19
7
HOH
HOH
287
A
HOH
288
7
HOH
HOH
288
A
HOH
289
7
HOH
HOH
289
A
HOH
290
7
HOH
HOH
290
A
HOH
291
7
HOH
HOH
291
A
HOH
292
7
HOH
HOH
292
A
HOH
293
7
HOH
HOH
293
A
HOH
294
7
HOH
HOH
294
A
HOH
295
7
HOH
HOH
295
A
HOH
296
7
HOH
HOH
296
A
HOH
297
7
HOH
HOH
297
A
HOH
298
7
HOH
HOH
298
A
HOH
20
7
HOH
HOH
299
A
HOH
300
7
HOH
HOH
300
A
HOH
301
7
HOH
HOH
301
A
HOH
302
7
HOH
HOH
302
A
HOH
303
7
HOH
HOH
303
A
HOH
21
7
HOH
HOH
304
A
HOH
305
7
HOH
HOH
305
A
HOH
306
7
HOH
HOH
306
A
HOH
307
7
HOH
HOH
307
A
HOH
308
7
HOH
HOH
308
A
HOH
309
7
HOH
HOH
309
A
HOH
310
7
HOH
HOH
310
A
HOH
311
7
HOH
HOH
311
A
HOH
312
7
HOH
HOH
312
A
HOH
313
7
HOH
HOH
313
A
HOH
314
7
HOH
HOH
314
A
HOH
315
7
HOH
HOH
315
A
HOH
316
7
HOH
HOH
316
A
HOH
317
7
HOH
HOH
317
A
HOH
318
7
HOH
HOH
318
A
HOH
319
7
HOH
HOH
319
A
HOH
320
7
HOH
HOH
320
A
HOH
321
7
HOH
HOH
321
A
HOH
322
7
HOH
HOH
322
A
HOH
323
7
HOH
HOH
323
A
HOH
324
7
HOH
HOH
324
A
HOH
325
7
HOH
HOH
325
A
HOH
326
7
HOH
HOH
326
A
HOH
327
7
HOH
HOH
327
A
HOH
22
7
HOH
HOH
328
A
HOH
329
7
HOH
HOH
329
A
HOH
330
7
HOH
HOH
330
A
HOH
331
7
HOH
HOH
331
A
HOH
332
7
HOH
HOH
332
A
HOH
333
7
HOH
HOH
333
A
HOH
334
7
HOH
HOH
334
A
HOH
335
7
HOH
HOH
335
A
HOH
336
7
HOH
HOH
336
A
HOH
337
7
HOH
HOH
337
A
HOH
338
7
HOH
HOH
338
A
HOH
339
7
HOH
HOH
339
A
HOH
23
7
HOH
HOH
340
A
HOH
24
7
HOH
HOH
341
A
HOH
25
7
HOH
HOH
342
A
HOH
27
7
HOH
HOH
343
A
HOH
28
7
HOH
HOH
344
A
HOH
29
7
HOH
HOH
345
A
HOH
30
7
HOH
HOH
346
A
HOH
32
7
HOH
HOH
347
A
HOH
33
7
HOH
HOH
348
A
HOH
34
7
HOH
HOH
349
A
HOH
35
7
HOH
HOH
350
A
HOH
36
7
HOH
HOH
351
A
HOH
39
7
HOH
HOH
352
A
HOH
40
7
HOH
HOH
353
A
HOH
41
7
HOH
HOH
354
A
HOH
42
7
HOH
HOH
355
A
HOH
43
7
HOH
HOH
356
A
HOH
44
7
HOH
HOH
357
A
HOH
45
7
HOH
HOH
358
A
HOH
47
7
HOH
HOH
359
A
HOH
48
7
HOH
HOH
360
A
HOH
49
7
HOH
HOH
361
A
HOH
50
7
HOH
HOH
362
A
HOH
51
7
HOH
HOH
363
A
HOH
52
7
HOH
HOH
364
A
HOH
53
7
HOH
HOH
365
A
HOH
54
7
HOH
HOH
366
A
HOH
55
7
HOH
HOH
367
A
HOH
56
7
HOH
HOH
368
A
HOH
57
7
HOH
HOH
369
A
HOH
58
7
HOH
HOH
370
A
HOH
59
7
HOH
HOH
371
A
HOH
60
7
HOH
HOH
372
A
HOH
61
7
HOH
HOH
373
A
HOH
62
7
HOH
HOH
374
A
HOH
63
7
HOH
HOH
375
A
HOH
65
7
HOH
HOH
376
A
HOH
66
7
HOH
HOH
377
A
HOH
67
7
HOH
HOH
378
A
HOH
68
7
HOH
HOH
379
A
HOH
69
7
HOH
HOH
380
A
HOH
70
7
HOH
HOH
381
A
HOH
71
7
HOH
HOH
382
A
HOH
73
7
HOH
HOH
383
A
HOH
74
7
HOH
HOH
384
A
HOH
76
7
HOH
HOH
385
A
HOH
77
7
HOH
HOH
386
A
HOH
78
7
HOH
HOH
387
A
HOH
82
7
HOH
HOH
388
A
HOH
84
7
HOH
HOH
389
A
HOH
86
7
HOH
HOH
390
A
HOH
90
7
HOH
HOH
391
A
HOH
91
7
HOH
HOH
392
A
HOH
93
7
HOH
HOH
393
A
HOH
94
7
HOH
HOH
394
A
HOH
95
7
HOH
HOH
395
A
HOH
96
7
HOH
HOH
396
A
HOH
97
7
HOH
HOH
397
A
HOH
98
7
HOH
HOH
398
A
HOH
99
7
HOH
HOH
399
A
HOH
100
7
HOH
HOH
400
A
HOH
101
7
HOH
HOH
401
A
HOH
102
7
HOH
HOH
402
A
HOH
103
7
HOH
HOH
403
A
HOH
104
7
HOH
HOH
404
A
HOH
105
7
HOH
HOH
405
A
HOH
106
7
HOH
HOH
406
A
HOH
107
7
HOH
HOH
407
A
HOH
108
7
HOH
HOH
408
A
HOH
109
7
HOH
HOH
409
A
HOH
110
7
HOH
HOH
410
A
HOH
113
7
HOH
HOH
411
A
HOH
114
7
HOH
HOH
412
A
HOH
115
7
HOH
HOH
413
A
HOH
116
7
HOH
HOH
414
A
HOH
118
7
HOH
HOH
415
A
HOH
119
7
HOH
HOH
416
A
HOH
122
7
HOH
HOH
417
A
HOH
128
7
HOH
HOH
418
A
HOH
129
7
HOH
HOH
419
A
HOH
130
7
HOH
HOH
420
A
HOH
132
7
HOH
HOH
421
A
HOH
133
7
HOH
HOH
422
A
HOH
136
7
HOH
HOH
423
A
HOH
137
7
HOH
HOH
424
A
HOH
139
7
HOH
HOH
425
A
HOH
140
7
HOH
HOH
426
A
HOH
142
7
HOH
HOH
427
A
HOH
144
7
HOH
HOH
428
A
HOH
145
7
HOH
HOH
429
A
HOH
151
7
HOH
HOH
430
A
HOH
155
7
HOH
HOH
431
A
HOH
157
7
HOH
HOH
432
A
HOH
158
7
HOH
HOH
433
A
HOH
159
7
HOH
HOH
434
A
HOH
162
7
HOH
HOH
435
A
HOH
163
7
HOH
HOH
436
A
HOH
164
7
HOH
HOH
437
A
HOH
165
7
HOH
HOH
438
A
HOH
166
7
HOH
HOH
439
A
HOH
168
7
HOH
HOH
440
A
HOH
169
7
HOH
HOH
441
A
HOH
176
7
HOH
HOH
442
A
HOH
177
7
HOH
HOH
443
A
HOH
178
7
HOH
HOH
444
A
HOH
180
7
HOH
HOH
445
A
HOH
181
7
HOH
HOH
446
A
HOH
182
7
HOH
HOH
447
A
HOH
189
7
HOH
HOH
448
A
HOH
192
7
HOH
HOH
449
A
HOH
197
7
HOH
HOH
450
A
HOH
198
7
HOH
HOH
451
A
HOH
201
7
HOH
HOH
452
A
HOH
203
7
HOH
HOH
453
A
HOH
205
7
HOH
HOH
454
A
HOH
206
7
HOH
HOH
455
A
HOH
207
7
HOH
HOH
456
A
HOH
208
7
HOH
HOH
457
A
HOH
209
7
HOH
HOH
458
A
HOH
210
7
HOH
HOH
459
A
HOH
211
7
HOH
HOH
460
A
HOH
212
7
HOH
HOH
461
A
HOH
219
7
HOH
HOH
462
A
HOH
221
7
HOH
HOH
463
A
HOH
223
7
HOH
HOH
464
A
HOH
224
7
HOH
HOH
465
A
HOH
225
7
HOH
HOH
466
A
HOH
226
7
HOH
HOH
467
A
HOH
227
7
HOH
HOH
468
A
HOH
228
7
HOH
HOH
469
A
HOH
229
7
HOH
HOH
470
A
HOH
230
7
HOH
HOH
471
A
HOH
1
7
HOH
HOH
472
A
HOH
2
7
HOH
HOH
473
A
HOH
4
7
HOH
HOH
474
A
HOH
5
7
HOH
HOH
475
A
HOH
7
7
HOH
HOH
476
A
HOH
9
7
HOH
HOH
477
A
HOH
10
7
HOH
HOH
478
A
HOH
11
7
HOH
HOH
479
A
HOH
13
7
HOH
HOH
480
A
HOH
15
7
HOH
HOH
481
A
HOH
18
7
HOH
HOH
482
A
HOH
19
7
HOH
HOH
483
A
HOH
21
7
HOH
HOH
484
A
HOH
27
7
HOH
HOH
485
A
HOH
4
7
HOH
HOH
486
A
HOH
5
7
HOH
HOH
487
A
HOH
2
7
HOH
HOH
488
A
HOH
4
7
HOH
HOH
489
A
HOH
5
7
HOH
HOH
490
A
HOH
1
7
HOH
HOH
491
A
HOH
3
7
HOH
HOH
492
A
HOH
4
7
HOH
HOH
493
A
HOH
5
7
HOH
HOH
494
A
HOH
6
7
HOH
HOH
495
A
HOH
7
7
HOH
HOH
496
A
HOH
9
7
HOH
HOH
497
A
HOH
10
7
HOH
HOH
498
A
HOH
11
7
HOH
HOH
499
A
HOH
12
7
HOH
HOH
500
A
HOH
13
7
HOH
HOH
501
A
HOH
14
7
HOH
HOH
502
A
HOH
15
7
HOH
HOH
503
A
HOH
16
7
HOH
HOH
504
A
HOH
17
7
HOH
HOH
505
A
HOH
18
7
HOH
HOH
506
A
HOH
19
7
HOH
HOH
507
A
HOH
20
7
HOH
HOH
508
A
HOH
21
7
HOH
HOH
509
A
HOH
22
7
HOH
HOH
510
A
HOH
23
7
HOH
HOH
511
A
HOH
24
7
HOH
HOH
512
A
HOH
26
7
HOH
HOH
513
A
HOH
27
7
HOH
HOH
514
A
HOH
28
7
HOH
HOH
515
A
HOH
29
7
HOH
HOH
516
A
HOH
30
7
HOH
HOH
517
A
HOH
32
7
HOH
HOH
518
A
HOH
33
7
HOH
HOH
519
A
HOH
34
7
HOH
HOH
520
A
HOH
36
7
HOH
HOH
521
A
HOH
37
7
HOH
HOH
522
A
HOH
39
7
HOH
HOH
523
A
HOH
40
7
HOH
HOH
524
A
HOH
41
7
HOH
HOH
525
A
HOH
42
7
HOH
HOH
526
A
HOH
43
7
HOH
HOH
527
A
HOH
44
7
HOH
HOH
528
A
HOH
45
7
HOH
HOH
529
A
HOH
47
7
HOH
HOH
530
A
HOH
48
7
HOH
HOH
531
A
HOH
1
7
HOH
HOH
532
A
HOH
2
7
HOH
HOH
533
A
HOH
3
7
HOH
HOH
534
A
HOH
1
7
HOH
HOH
535
A
HOH
3
7
HOH
HOH
536
A
HOH
4
7
HOH
HOH
537
A
HOH
5
7
HOH
HOH
538
A
HOH
6
7
HOH
HOH
539
A
HOH
7
7
HOH
HOH
540
A
HOH
8
7
HOH
HOH
541
A
HOH
9
7
HOH
HOH
542
A
HOH
10
7
HOH
HOH
543
A
HOH
11
7
HOH
HOH
544
A
HOH
12
7
HOH
HOH
545
A
HOH
13
7
HOH
HOH
546
A
HOH
14
7
HOH
HOH
547
A
HOH
17
7
HOH
HOH
548
A
HOH
18
7
HOH
HOH
549
A
HOH
19
7
HOH
HOH
550
A
HOH
20
7
HOH
HOH
551
A
HOH
21
7
HOH
HOH
552
A
HOH
22
7
HOH
HOH
553
A
HOH
24
7
HOH
HOH
554
A
HOH
27
7
HOH
HOH
555
A
HOH
28
7
HOH
HOH
556
A
HOH
29
7
HOH
HOH
557
A
HOH
30
7
HOH
HOH
558
A
HOH
31
7
HOH
HOH
559
A
HOH
34
7
HOH
HOH
560
A
HOH
35
7
HOH
HOH
561
A
HOH
36
7
HOH
HOH
562
A
HOH
37
7
HOH
HOH
563
A
HOH
39
7
HOH
HOH
564
A
HOH
40
7
HOH
HOH
565
A
HOH
42
7
HOH
HOH
566
A
HOH
43
7
HOH
HOH
567
A
HOH
47
7
HOH
HOH
568
A
HOH
48
7
HOH
HOH
569
A
HOH
49
7
HOH
HOH
570
A
HOH
50
7
HOH
HOH
571
A
HOH
51
7
HOH
HOH
572
A
HOH
1
7
HOH
HOH
573
A
HOH
2
7
HOH
HOH
574
A
HOH
3
7
HOH
HOH
575
A
HOH
4
7
HOH
HOH
576
A
HOH
6
7
HOH
HOH
577
A
HOH
7
7
HOH
HOH
578
A
HOH
8
7
HOH
HOH
579
A
HOH
9
7
HOH
HOH
580
A
HOH
10
7
HOH
HOH
581
A
HOH
12
7
HOH
HOH
582
A
HOH
3
7
HOH
HOH
583
A
n
1
-21
A
n
2
-20
A
n
3
-19
A
n
4
-18
A
n
5
-17
A
n
6
-16
A
n
7
-15
A
n
8
-14
A
n
9
-13
A
n
10
-12
A
n
11
-11
A
n
12
-10
A
n
13
-9
A
n
14
-8
A
n
15
-7
A
n
16
-6
A
n
17
-5
A
n
18
-4
A
PHE
-3
n
19
PHE
-3
A
GLN
-2
n
20
GLN
-2
A
GLY
-1
n
21
GLY
-1
A
HIS
0
n
22
HIS
0
A
MET
1
n
23
MET
1
A
LEU
2
n
24
LEU
2
A
PHE
3
n
25
PHE
3
A
ILE
4
n
26
ILE
4
A
SER
5
n
27
SER
5
A
ALA
6
n
28
ALA
6
A
THR
7
n
29
THR
7
A
ASN
8
n
30
ASN
8
A
THR
9
n
31
THR
9
A
ASN
10
n
32
ASN
10
A
ALA
11
n
33
ALA
11
A
GLY
12
n
34
GLY
12
A
LYS
13
n
35
LYS
13
A
THR
14
n
36
THR
14
A
THR
15
n
37
THR
15
A
CYS
16
n
38
CYS
16
A
ALA
17
n
39
ALA
17
A
ARG
18
n
40
ARG
18
A
LEU
19
n
41
LEU
19
A
LEU
20
n
42
LEU
20
A
ALA
21
n
43
ALA
21
A
GLN
22
n
44
GLN
22
A
TYR
23
n
45
TYR
23
A
CYS
24
n
46
CYS
24
A
ASN
25
n
47
ASN
25
A
ALA
26
n
48
ALA
26
A
CYS
27
n
49
CYS
27
A
GLY
28
n
50
GLY
28
A
VAL
29
n
51
VAL
29
A
LYS
30
n
52
LYS
30
A
THR
31
n
53
THR
31
A
ILE
32
n
54
ILE
32
A
LEU
33
n
55
LEU
33
A
LEU
34
n
56
LEU
34
A
LYS
35
n
57
LYS
35
A
PRO
36
n
58
PRO
36
A
ILE
37
n
59
ILE
37
A
GLU
38
n
60
GLU
38
A
THR
39
n
61
THR
39
A
GLY
40
n
62
GLY
40
A
VAL
41
n
63
VAL
41
A
ASN
42
n
64
ASN
42
A
ASP
43
n
65
ASP
43
A
ALA
44
n
66
ALA
44
A
ILE
45
n
67
ILE
45
A
ASN
46
n
68
ASN
46
A
HIS
47
n
69
HIS
47
A
SER
48
n
70
SER
48
A
SER
49
n
71
SER
49
A
ASP
50
n
72
ASP
50
A
ALA
51
n
73
ALA
51
A
HIS
52
n
74
HIS
52
A
LEU
53
n
75
LEU
53
A
PHE
54
n
76
PHE
54
A
LEU
55
n
77
LEU
55
A
GLN
56
n
78
GLN
56
A
ASP
57
n
79
ASP
57
A
ASN
58
n
80
ASN
58
A
ARG
59
n
81
ARG
59
A
LEU
60
n
82
LEU
60
A
LEU
61
n
83
LEU
61
A
ASP
62
n
84
ASP
62
A
ARG
63
n
85
ARG
63
A
SER
64
n
86
SER
64
A
LEU
65
n
87
LEU
65
A
THR
66
n
88
THR
66
A
LEU
67
n
89
LEU
67
A
LYS
68
n
90
LYS
68
A
ASP
69
n
91
ASP
69
A
ILE
70
n
92
ILE
70
A
SER
71
n
93
SER
71
A
PHE
72
n
94
PHE
72
A
TYR
73
n
95
TYR
73
A
ARG
74
n
96
ARG
74
A
TYR
75
n
97
TYR
75
A
HIS
76
n
98
HIS
76
A
LYS
77
n
99
LYS
77
A
VAL
78
n
100
VAL
78
A
SER
79
n
101
SER
79
A
ALA
80
n
102
ALA
80
A
PRO
81
n
103
PRO
81
A
LEU
82
n
104
LEU
82
A
ILE
83
n
105
ILE
83
A
ALA
84
n
106
ALA
84
A
GLN
85
n
107
GLN
85
A
GLN
86
n
108
GLN
86
A
GLU
87
n
109
GLU
87
A
GLU
88
n
110
GLU
88
A
ASP
89
n
111
ASP
89
A
PRO
90
n
112
PRO
90
A
ASN
91
n
113
ASN
91
A
ALA
92
n
114
ALA
92
A
PRO
93
n
115
PRO
93
A
ILE
94
n
116
ILE
94
A
ASP
95
n
117
ASP
95
A
THR
96
n
118
THR
96
A
ASP
97
n
119
ASP
97
A
ASN
98
n
120
ASN
98
A
LEU
99
n
121
LEU
99
A
THR
100
n
122
THR
100
A
GLN
101
n
123
GLN
101
A
ARG
102
n
124
ARG
102
A
LEU
103
n
125
LEU
103
A
HIS
104
n
126
HIS
104
A
ASN
105
n
127
ASN
105
A
PHE
106
n
128
PHE
106
A
THR
107
n
129
THR
107
A
LYS
108
n
130
LYS
108
A
THR
109
n
131
THR
109
A
TYR
110
n
132
TYR
110
A
ASP
111
n
133
ASP
111
A
LEU
112
n
134
LEU
112
A
VAL
113
n
135
VAL
113
A
ILE
114
n
136
ILE
114
A
VAL
115
n
137
VAL
115
A
GLU
116
n
138
GLU
116
A
GLY
117
n
139
GLY
117
A
ALA
118
n
140
ALA
118
A
GLY
119
n
141
GLY
119
A
GLY
120
n
142
GLY
120
A
LEU
121
n
143
LEU
121
A
CYS
122
n
144
CYS
122
A
VAL
123
n
145
VAL
123
A
PRO
124
n
146
PRO
124
A
ILE
125
n
147
ILE
125
A
THR
126
n
148
THR
126
A
LEU
127
n
149
LEU
127
A
GLU
128
n
150
GLU
128
A
GLU
129
n
151
GLU
129
A
ASN
130
n
152
ASN
130
A
MET
131
n
153
MET
131
A
LEU
132
n
154
LEU
132
A
ASP
133
n
155
ASP
133
A
PHE
134
n
156
PHE
134
A
ALA
135
n
157
ALA
135
A
LEU
136
n
158
LEU
136
A
LYS
137
n
159
LYS
137
A
LEU
138
n
160
LEU
138
A
LYS
139
n
161
LYS
139
A
ALA
140
n
162
ALA
140
A
LYS
141
n
163
LYS
141
A
MET
142
n
164
MET
142
A
LEU
143
n
165
LEU
143
A
LEU
144
n
166
LEU
144
A
ILE
145
n
167
ILE
145
A
SER
146
n
168
SER
146
A
HIS
147
n
169
HIS
147
A
ASP
148
n
170
ASP
148
A
ASN
149
n
171
ASN
149
A
LEU
150
n
172
LEU
150
A
GLY
151
n
173
GLY
151
A
LEU
152
n
174
LEU
152
A
ILE
153
n
175
ILE
153
A
ASN
154
n
176
ASN
154
A
ASP
155
n
177
ASP
155
A
CYS
156
n
178
CYS
156
A
LEU
157
n
179
LEU
157
A
LEU
158
n
180
LEU
158
A
ASN
159
n
181
ASN
159
A
ASP
160
n
182
ASP
160
A
PHE
161
n
183
PHE
161
A
LEU
162
n
184
LEU
162
A
LEU
163
n
185
LEU
163
A
LYS
164
n
186
LYS
164
A
SER
165
n
187
SER
165
A
HIS
166
n
188
HIS
166
A
GLN
167
n
189
GLN
167
A
LEU
168
n
190
LEU
168
A
ASP
169
n
191
ASP
169
A
TYR
170
n
192
TYR
170
A
LYS
171
n
193
LYS
171
A
ILE
172
n
194
ILE
172
A
ALA
173
n
195
ALA
173
A
ILE
174
n
196
ILE
174
A
ASN
175
n
197
ASN
175
A
LEU
176
n
198
LEU
176
A
LYS
177
n
199
LYS
177
A
GLY
178
n
200
GLY
178
A
ASN
179
n
201
ASN
179
A
ASN
180
n
202
ASN
180
A
THR
181
n
203
THR
181
A
ALA
182
n
204
ALA
182
A
PHE
183
n
205
PHE
183
A
HIS
184
n
206
HIS
184
A
SER
185
n
207
SER
185
A
ILE
186
n
208
ILE
186
A
SER
187
n
209
SER
187
A
LEU
188
n
210
LEU
188
A
PRO
189
n
211
PRO
189
A
TYR
190
n
212
TYR
190
A
ILE
191
n
213
ILE
191
A
GLU
192
n
214
GLU
192
A
LEU
193
n
215
LEU
193
A
PHE
194
n
216
PHE
194
A
ASN
195
n
217
ASN
195
A
THR
196
n
218
THR
196
A
ARG
197
n
219
ARG
197
A
SER
198
n
220
SER
198
A
ASN
199
n
221
ASN
199
A
ASN
200
n
222
ASN
200
A
PRO
201
n
223
PRO
201
A
ILE
202
n
224
ILE
202
A
VAL
203
n
225
VAL
203
A
ILE
204
n
226
ILE
204
A
PHE
205
n
227
PHE
205
A
GLN
206
n
228
GLN
206
A
GLN
207
n
229
GLN
207
A
SER
208
n
230
SER
208
A
LEU
209
n
231
LEU
209
A
LYS
210
n
232
LYS
210
A
VAL
211
n
233
VAL
211
A
LEU
212
n
234
LEU
212
A
MET
213
n
235
MET
213
A
SER
214
n
236
SER
214
A
PHE
215
n
237
PHE
215
A
ALA
216
n
238
ALA
216
A
LEU
217
n
239
LEU
217
A
LYS
218
n
240
LYS
218
A
GLY
219
n
241
GLY
219
A
SER
220
n
242
SER
220
A
author_and_software_defined_assembly
PISA
2
dimeric
7110
-69
18280
A
THR
14
A
OG1
THR
36
1_555
A
MG
223
D
MG
MG
1_555
A
ASP
50
A
OD2
ASP
72
1_555
80.5
A
THR
14
A
OG1
THR
36
1_555
A
MG
223
D
MG
MG
1_555
A
GLU
116
A
OE2
GLU
138
1_555
84.1
A
ASP
50
A
OD2
ASP
72
1_555
A
MG
223
D
MG
MG
1_555
A
GLU
116
A
OE2
GLU
138
1_555
89.6
A
THR
14
A
OG1
THR
36
1_555
A
MG
223
D
MG
MG
1_555
A
ADP
222
C
O1B
ADP
1_555
89.8
A
ASP
50
A
OD2
ASP
72
1_555
A
MG
223
D
MG
MG
1_555
A
ADP
222
C
O1B
ADP
1_555
164.4
A
GLU
116
A
OE2
GLU
138
1_555
A
MG
223
D
MG
MG
1_555
A
ADP
222
C
O1B
ADP
1_555
101.7
A
THR
14
A
OG1
THR
36
1_555
A
MG
223
D
MG
MG
1_555
A
PO4
225
F
O1
PO4
1_555
170.0
A
ASP
50
A
OD2
ASP
72
1_555
A
MG
223
D
MG
MG
1_555
A
PO4
225
F
O1
PO4
1_555
95.5
A
GLU
116
A
OE2
GLU
138
1_555
A
MG
223
D
MG
MG
1_555
A
PO4
225
F
O1
PO4
1_555
86.7
A
ADP
222
C
O1B
ADP
1_555
A
MG
223
D
MG
MG
1_555
A
PO4
225
F
O1
PO4
1_555
95.9
A
THR
14
A
OG1
THR
36
1_555
A
MG
223
D
MG
MG
1_555
A
HOH
337
L
O
HOH
1_555
94.1
A
ASP
50
A
OD2
ASP
72
1_555
A
MG
223
D
MG
MG
1_555
A
HOH
337
L
O
HOH
1_555
85.4
A
GLU
116
A
OE2
GLU
138
1_555
A
MG
223
D
MG
MG
1_555
A
HOH
337
L
O
HOH
1_555
175.0
A
ADP
222
C
O1B
ADP
1_555
A
MG
223
D
MG
MG
1_555
A
HOH
337
L
O
HOH
1_555
83.0
A
PO4
225
F
O1
PO4
1_555
A
MG
223
D
MG
MG
1_555
A
HOH
337
L
O
HOH
1_555
94.7
A
ADP
222
C
O2B
ADP
1_555
A
MG
224
E
MG
MG
1_555
A
PO4
225
F
O3
PO4
1_555
100.9
A
ADP
222
C
O2B
ADP
1_555
A
MG
224
E
MG
MG
1_555
A
HOH
307
L
O
HOH
1_555
170.6
A
PO4
225
F
O3
PO4
1_555
A
MG
224
E
MG
MG
1_555
A
HOH
307
L
O
HOH
1_555
85.6
A
ADP
222
C
O2B
ADP
1_555
A
MG
224
E
MG
MG
1_555
A
HOH
337
L
O
HOH
1_555
86.5
A
PO4
225
F
O3
PO4
1_555
A
MG
224
E
MG
MG
1_555
A
HOH
337
L
O
HOH
1_555
107.4
A
HOH
307
L
O
HOH
1_555
A
MG
224
E
MG
MG
1_555
A
HOH
337
L
O
HOH
1_555
85.1
A
ADP
222
C
O2B
ADP
1_555
A
MG
224
E
MG
MG
1_555
A
HOH
539
L
O
HOH
1_555
92.6
A
PO4
225
F
O3
PO4
1_555
A
MG
224
E
MG
MG
1_555
A
HOH
539
L
O
HOH
1_555
84.0
A
HOH
307
L
O
HOH
1_555
A
MG
224
E
MG
MG
1_555
A
HOH
539
L
O
HOH
1_555
94.8
A
HOH
337
L
O
HOH
1_555
A
MG
224
E
MG
MG
1_555
A
HOH
539
L
O
HOH
1_555
168.6
A
ADP
222
C
O2B
ADP
1_555
A
MG
224
E
MG
MG
1_555
A
HOH
540
L
O
HOH
1_555
92.5
A
PO4
225
F
O3
PO4
1_555
A
MG
224
E
MG
MG
1_555
A
HOH
540
L
O
HOH
1_555
162.1
A
HOH
307
L
O
HOH
1_555
A
MG
224
E
MG
MG
1_555
A
HOH
540
L
O
HOH
1_555
82.6
A
HOH
337
L
O
HOH
1_555
A
MG
224
E
MG
MG
1_555
A
HOH
540
L
O
HOH
1_555
85.1
A
HOH
539
L
O
HOH
1_555
A
MG
224
E
MG
MG
1_555
A
HOH
540
L
O
HOH
1_555
83.6
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
2_554
-x,y,-z-1
crystal symmetry operation
13.3034555052
0.0000000000
-67.4964450665
A
N
ILE
32
A
N
ILE
54
A
O
ILE
114
A
O
ILE
136
A
O
VAL
115
A
O
VAL
137
A
N
ILE
4
A
N
ILE
26
A
N
PHE
3
A
N
PHE
25
A
O
LYS
141
A
O
LYS
163
A
N
LEU
144
A
N
LEU
166
A
O
LYS
171
A
O
LYS
193
A
N
ILE
174
A
N
ILE
196
A
O
VAL
203
A
O
VAL
225
A
N
GLU
38
A
N
GLU
60
A
O
TYR
73
A
O
TYR
95
1
A
HOH
359
L
HOH
1
A
HOH
374
L
HOH
1
A
CD
GLN
101
A
CD
GLN
123
1
Y
1
A
OE1
GLN
101
A
OE1
GLN
123
1
Y
1
A
NE2
GLN
101
A
NE2
GLN
123
1
Y
1
A
CG
ASN
179
A
CG
ASN
201
1
Y
1
A
OD1
ASN
179
A
OD1
ASN
201
1
Y
1
A
ND2
ASN
179
A
ND2
ASN
201
1
Y
1
A
CE
LYS
210
A
CE
LYS
232
1
Y
1
A
NZ
LYS
210
A
NZ
LYS
232
1
Y
1
A
MET
-21
A
MET
1
1
Y
1
A
GLY
-20
A
GLY
2
1
Y
1
A
SER
-19
A
SER
3
1
Y
1
A
SER
-18
A
SER
4
1
Y
1
A
HIS
-17
A
HIS
5
1
Y
1
A
HIS
-16
A
HIS
6
1
Y
1
A
HIS
-15
A
HIS
7
1
Y
1
A
HIS
-14
A
HIS
8
1
Y
1
A
HIS
-13
A
HIS
9
1
Y
1
A
HIS
-12
A
HIS
10
1
Y
1
A
SER
-11
A
SER
11
1
Y
1
A
SER
-10
A
SER
12
1
Y
1
A
GLY
-9
A
GLY
13
1
Y
1
A
ARG
-8
A
ARG
14
1
Y
1
A
GLU
-7
A
GLU
15
1
Y
1
A
ASN
-6
A
ASN
16
1
Y
1
A
LEU
-5
A
LEU
17
1
Y
1
A
TYR
-4
A
TYR
18
1
Y
1
A
A
CD
OE1
GLU
GLU
129
129
-0.080
0.011
1.252
1.172
B
B
N
1
A
SER
5
-116.43
-168.85
1
A
ASN
179
86.38
1.87
8.869
-0.04
0.00
-0.15
0.14
0.00
-0.16
0.979
0.973
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.14245
0.11724
0.11855
0.11855
1.36
50.00
2190
41354
41354
5.0
97.59
1.061
0.024
RANDOM
1
THROUGHOUT
0
0
MOLECULAR REPLACEMENT
0.047
0.80
0.80
1.20
PDB entry 2QMO
MAXIMUM LIKELIHOOD
MASK
1.36
50.00
353
2169
65
0
1751
0.020
0.022
1968
0.020
0.020
1305
1.707
1.994
2682
2.307
3.000
3230
6.053
5.000
253
35.270
25.506
89
11.717
15.000
346
16.579
15.000
7
0.123
0.200
310
0.009
0.020
2185
0.005
0.020
369
1.801
1.500
1188
2.142
1.500
474
2.584
2.000
1936
3.912
3.000
780
5.465
4.500
738
2.096
3.000
1910
0.195
0.172
1.395
107
2583
2583
20
83.23
11
1.36
50
3QXH
43544
43544
0
-3.0
0.026
0.026
1
47.3
4.0
97.7
0.070
1.36
1.38
13.2
1735
0.070
1
3.2
81.1
data collection
HKL-3000
phasing
HKL-3000
phasing
MOLREP
refinement
REFMAC
5.5
model building
Coot
data reduction
HKL-3000
data scaling
HKL-3000
Crystal structure of dethiobiotin synthetase (BioD) from Helicobacter pylori complexed with ADP and 8-aminocaprylic acid
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
5
N
N
6
N
N
6
N
N
6
N
N
6
N
N
6
N
N
7
N
N
A
GLY
12
A
GLY
34
HELX_P
A
CYS
27
A
CYS
49
1
1
16
A
SER
49
A
SER
71
HELX_P
A
ARG
59
A
ARG
81
1
2
11
A
THR
66
A
THR
88
HELX_P
A
SER
71
A
SER
93
1
3
6
A
ALA
80
A
ALA
102
HELX_P
A
ASP
89
A
ASP
111
1
4
10
A
ASP
95
A
ASP
117
HELX_P
A
PHE
106
A
PHE
128
1
5
12
A
THR
107
A
THR
129
HELX_P
A
THR
109
A
THR
131
5
6
3
A
ASN
130
A
ASN
152
HELX_P
A
LYS
139
A
LYS
161
1
7
10
A
GLY
151
A
GLY
173
HELX_P
A
SER
165
A
SER
187
1
8
15
A
THR
181
A
THR
203
HELX_P
A
SER
187
A
SER
209
1
9
7
A
SER
187
A
SER
209
HELX_P
A
SER
198
A
SER
220
1
10
12
A
SER
208
A
SER
230
HELX_P
A
LYS
218
A
LYS
240
1
11
11
metalc
2.152
A
THR
14
A
OG1
THR
36
1_555
A
MG
223
D
MG
MG
1_555
metalc
2.094
A
ASP
50
A
OD2
ASP
72
1_555
A
MG
223
D
MG
MG
1_555
metalc
2.063
A
GLU
116
A
OE2
GLU
138
1_555
A
MG
223
D
MG
MG
1_555
metalc
2.028
A
ADP
222
C
O1B
ADP
1_555
A
MG
223
D
MG
MG
1_555
metalc
2.067
A
ADP
222
C
O2B
ADP
1_555
A
MG
224
E
MG
MG
1_555
metalc
2.018
A
MG
223
D
MG
MG
1_555
A
PO4
225
F
O1
PO4
1_555
metalc
2.183
A
MG
223
D
MG
MG
1_555
A
HOH
337
L
O
HOH
1_555
metalc
1.992
A
MG
224
E
MG
MG
1_555
A
PO4
225
F
O3
PO4
1_555
metalc
2.179
A
MG
224
E
MG
MG
1_555
A
HOH
307
L
O
HOH
1_555
metalc
2.200
A
MG
224
E
MG
MG
1_555
A
HOH
337
L
O
HOH
1_555
metalc
2.185
A
MG
224
E
MG
MG
1_555
A
HOH
539
L
O
HOH
1_555
metalc
2.167
A
MG
224
E
MG
MG
1_555
A
HOH
540
L
O
HOH
1_555
LIGASE
DTBS, DETHIOBIOTIN SYNTHETASE, ATP BINDING, STRUCTURAL GENOMICS, PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, LIGASE
BIOD_HELPY
UNP
1
1
O24872
MLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAINHSSDAHLFLQDNRLLDRSLTLKDISFYRYHKVSA
PLIAQQEEDPNAPIDTDNLTQRLHNFTKTYDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHDNLGLINDCLLND
FLLKSHQLDYKIAINLKGNNTAFHSISLPYIELFNTRSNNPIVIFQQSLKVLMSFALK
1
218
3QXH
1
218
O24872
A
1
23
240
1
expression tag
MET
-21
3QXH
A
O24872
UNP
1
1
expression tag
GLY
-20
3QXH
A
O24872
UNP
2
1
expression tag
SER
-19
3QXH
A
O24872
UNP
3
1
expression tag
SER
-18
3QXH
A
O24872
UNP
4
1
expression tag
HIS
-17
3QXH
A
O24872
UNP
5
1
expression tag
HIS
-16
3QXH
A
O24872
UNP
6
1
expression tag
HIS
-15
3QXH
A
O24872
UNP
7
1
expression tag
HIS
-14
3QXH
A
O24872
UNP
8
1
expression tag
HIS
-13
3QXH
A
O24872
UNP
9
1
expression tag
HIS
-12
3QXH
A
O24872
UNP
10
1
expression tag
SER
-11
3QXH
A
O24872
UNP
11
1
expression tag
SER
-10
3QXH
A
O24872
UNP
12
1
expression tag
GLY
-9
3QXH
A
O24872
UNP
13
1
expression tag
ARG
-8
3QXH
A
O24872
UNP
14
1
expression tag
GLU
-7
3QXH
A
O24872
UNP
15
1
expression tag
ASN
-6
3QXH
A
O24872
UNP
16
1
expression tag
LEU
-5
3QXH
A
O24872
UNP
17
1
expression tag
TYR
-4
3QXH
A
O24872
UNP
18
1
expression tag
PHE
-3
3QXH
A
O24872
UNP
19
1
expression tag
GLN
-2
3QXH
A
O24872
UNP
20
1
expression tag
GLY
-1
3QXH
A
O24872
UNP
21
1
expression tag
HIS
0
3QXH
A
O24872
UNP
22
1
expression tag
GLY
219
3QXH
A
O24872
UNP
241
1
expression tag
SER
220
3QXH
A
O24872
UNP
242
6
2
parallel
parallel
parallel
parallel
parallel
parallel
A
THR
31
A
THR
53
A
LEU
34
A
LEU
56
A
LEU
112
A
LEU
134
A
GLU
116
A
GLU
138
A
HIS
0
A
HIS
22
A
ALA
6
A
ALA
28
A
LYS
141
A
LYS
163
A
SER
146
A
SER
168
A
TYR
170
A
TYR
192
A
ILE
174
A
ILE
196
A
VAL
203
A
VAL
225
A
ILE
204
A
ILE
226
A
ILE
37
A
ILE
59
A
GLU
38
A
GLU
60
A
TYR
73
A
TYR
95
A
ARG
74
A
ARG
96
BINDING SITE FOR RESIDUE 8AC A 221
A
8AC
221
Software
13
BINDING SITE FOR RESIDUE ADP A 222
A
ADP
222
Software
23
BINDING SITE FOR RESIDUE MG A 223
A
MG
223
Software
8
BINDING SITE FOR RESIDUE MG A 224
A
MG
224
Software
7
BINDING SITE FOR RESIDUE PO4 A 225
A
PO4
225
Software
15
BINDING SITE FOR RESIDUE EDO A 226
A
EDO
226
Software
3
BINDING SITE FOR RESIDUE EDO A 227
A
EDO
227
Software
7
BINDING SITE FOR RESIDUE EDO A 228
A
EDO
228
Software
6
BINDING SITE FOR RESIDUE EDO A 229
A
EDO
229
Software
5
BINDING SITE FOR RESIDUE EDO A 230
A
EDO
230
Software
6
A
THR
9
A
THR
31
13
1_555
A
THR
39
A
THR
61
13
1_555
A
SER
79
A
SER
101
13
1_555
A
VAL
123
A
VAL
145
13
1_555
A
GLY
151
A
GLY
173
13
2_554
A
LEU
152
A
LEU
174
13
2_554
A
ILE
153
A
ILE
175
13
2_554
A
ASN
154
A
ASN
176
13
2_554
A
PO4
225
F
PO4
13
1_555
A
HOH
308
L
HOH
13
1_555
A
HOH
356
L
HOH
13
1_555
A
HOH
493
L
HOH
13
2_554
A
HOH
556
L
HOH
13
1_555
A
ASN
10
A
ASN
32
23
1_555
A
ALA
11
A
ALA
33
23
1_555
A
GLY
12
A
GLY
34
23
1_555
A
LYS
13
A
LYS
35
23
1_555
A
THR
14
A
THR
36
23
1_555
A
THR
15
A
THR
37
23
1_555
A
GLU
116
A
GLU
138
23
1_555
A
GLN
167
A
GLN
189
23
1_545
A
ASN
175
A
ASN
197
23
1_555
A
LYS
177
A
LYS
199
23
1_555
A
MG
223
D
MG
23
1_555
A
MG
224
E
MG
23
1_555
A
PO4
225
F
PO4
23
1_555
A
HOH
335
L
HOH
23
1_545
A
HOH
337
L
HOH
23
1_555
A
HOH
340
L
HOH
23
1_555
A
HOH
392
L
HOH
23
1_555
A
HOH
503
L
HOH
23
1_555
A
HOH
520
L
HOH
23
1_545
A
HOH
539
L
HOH
23
1_555
A
HOH
540
L
HOH
23
1_555
A
HOH
558
L
HOH
23
1_545
A
HOH
563
L
HOH
23
1_555
A
THR
14
A
THR
36
8
1_555
A
LYS
35
A
LYS
57
8
1_555
A
ASP
50
A
ASP
72
8
1_555
A
GLU
116
A
GLU
138
8
1_555
A
ADP
222
C
ADP
8
1_555
A
MG
224
E
MG
8
1_555
A
PO4
225
F
PO4
8
1_555
A
HOH
337
L
HOH
8
1_555
A
ADP
222
C
ADP
7
1_555
A
MG
223
D
MG
7
1_555
A
PO4
225
F
PO4
7
1_555
A
HOH
307
L
HOH
7
1_555
A
HOH
337
L
HOH
7
1_555
A
HOH
539
L
HOH
7
1_555
A
HOH
540
L
HOH
7
1_555
A
THR
9
A
THR
31
15
1_555
A
LYS
13
A
LYS
35
15
1_555
A
LYS
35
A
LYS
57
15
1_555
A
ASP
50
A
ASP
72
15
1_555
A
GLU
116
A
GLU
138
15
1_555
A
ALA
118
A
ALA
140
15
1_555
A
GLY
119
A
GLY
141
15
1_555
A
8AC
221
B
8AC
15
1_555
A
ADP
222
C
ADP
15
1_555
A
MG
223
D
MG
15
1_555
A
MG
224
E
MG
15
1_555
A
HOH
307
L
HOH
15
1_555
A
HOH
337
L
HOH
15
1_555
A
HOH
496
L
HOH
15
1_555
A
HOH
539
L
HOH
15
1_555
A
ASN
130
A
ASN
152
3
1_555
A
ASP
133
A
ASP
155
3
1_555
A
HOH
530
L
HOH
3
2_554
A
PHE
72
A
PHE
94
7
1_555
A
TYR
73
A
TYR
95
7
1_555
A
ARG
74
A
ARG
96
7
1_555
A
TYR
75
A
TYR
97
7
1_555
A
ASP
89
A
ASP
111
7
1_555
A
HOH
568
L
HOH
7
1_555
A
HOH
569
L
HOH
7
1_555
A
VAL
41
A
VAL
63
6
1_555
A
ASN
42
A
ASN
64
6
1_555
A
ASP
43
A
ASP
65
6
1_555
A
ARG
74
A
ARG
96
6
1_555
A
HIS
76
A
HIS
98
6
1_555
A
HOH
577
L
HOH
6
1_555
A
ASN
25
A
ASN
47
5
1_555
A
LYS
30
A
LYS
52
5
1_555
A
LEU
61
A
LEU
83
5
1_555
A
HOH
514
L
HOH
5
1_555
A
HOH
534
L
HOH
5
1_555
A
HIS
0
A
HIS
22
6
1_555
A
MET
1
A
MET
23
6
1_555
A
LYS
139
A
LYS
161
6
1_555
A
LYS
141
A
LYS
163
6
1_555
A
SER
220
A
SER
242
6
1_555
A
HOH
578
L
HOH
6
1_555
5
C 1 2 1