0.017263
0.000000
0.000000
0.000000
0.017263
0.000000
0.000000
0.000000
0.011295
0.00000
0.00000
0.00000
Colliandre, L.
Gelin, M.
Labesse, G.
Guichou, J.-F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
57.927
57.927
88.537
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
67
747
755
10.1107/S0907444911023249
21904027
In-plate protein crystallization, in situ ligand soaking and X-ray diffraction.
2011
10.2210/pdb3qyu/pdb
pdb_00003qyu
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
298.0
1
298.0
1
CCD
2010-07-25
ADSC QUANTUM 315r
YALE MIRRORS
SINGLE WAVELENGTH
M
x-ray
1
YALE MIRRORS
SINGLE WAVELENGTH
M
x-ray
1
0.97964
1.0
BM30A
ESRF
0.97964
SYNCHROTRON
ESRF BEAMLINE BM30A
17652.125
Peptidyl-prolyl cis-trans isomerase F
5.2.1.8
catalytic domain
K175I
1
man
polymer
18.015
water
120
nat
water
PPIase F, Cyclophilin F, Rotamase F
no
no
GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGS
RFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDC
GQLS
GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGS
RFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDC
GQLS
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
PPIF, CYP3
9606
Homo sapiens
562
Escherichia coli
2
2.10
41.53
VAPOR DIFFUSION, SITTING DROP
7.3
30% Peg 4000, pH 7.3, VAPOR DIFFUSION, SITTING DROP, temperature 291K
291
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
repository
Initial release
Database references
Refinement description
Data collection
Database references
Refinement description
1
0
2011-08-24
1
1
2012-03-21
1
2
2017-11-08
1
3
2023-09-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
RCSB
Y
RCSB
2011-03-04
REL
REL
HOH
water
2Z6W
PDB entry 2Z6W
PDB
experimental model
HOH
1
2
HOH
HOH
1
A
HOH
2
2
HOH
HOH
2
A
HOH
3
2
HOH
HOH
3
A
HOH
5
2
HOH
HOH
5
A
HOH
6
2
HOH
HOH
6
A
HOH
7
2
HOH
HOH
7
A
HOH
8
2
HOH
HOH
8
A
HOH
9
2
HOH
HOH
9
A
HOH
10
2
HOH
HOH
10
A
HOH
11
2
HOH
HOH
11
A
HOH
12
2
HOH
HOH
12
A
HOH
13
2
HOH
HOH
13
A
HOH
14
2
HOH
HOH
14
A
HOH
15
2
HOH
HOH
15
A
HOH
16
2
HOH
HOH
16
A
HOH
17
2
HOH
HOH
17
A
HOH
18
2
HOH
HOH
18
A
HOH
19
2
HOH
HOH
19
A
HOH
20
2
HOH
HOH
20
A
HOH
21
2
HOH
HOH
21
A
HOH
22
2
HOH
HOH
22
A
HOH
23
2
HOH
HOH
23
A
HOH
24
2
HOH
HOH
24
A
HOH
25
2
HOH
HOH
25
A
HOH
26
2
HOH
HOH
26
A
HOH
27
2
HOH
HOH
27
A
HOH
28
2
HOH
HOH
28
A
HOH
29
2
HOH
HOH
29
A
HOH
30
2
HOH
HOH
30
A
HOH
31
2
HOH
HOH
31
A
HOH
32
2
HOH
HOH
32
A
HOH
33
2
HOH
HOH
33
A
HOH
34
2
HOH
HOH
34
A
HOH
35
2
HOH
HOH
35
A
HOH
36
2
HOH
HOH
36
A
HOH
37
2
HOH
HOH
37
A
HOH
38
2
HOH
HOH
38
A
HOH
39
2
HOH
HOH
39
A
HOH
40
2
HOH
HOH
40
A
HOH
41
2
HOH
HOH
41
A
HOH
42
2
HOH
HOH
42
A
HOH
43
2
HOH
HOH
43
A
HOH
44
2
HOH
HOH
208
A
HOH
45
2
HOH
HOH
209
A
HOH
46
2
HOH
HOH
210
A
HOH
47
2
HOH
HOH
211
A
HOH
49
2
HOH
HOH
212
A
HOH
50
2
HOH
HOH
213
A
HOH
52
2
HOH
HOH
214
A
HOH
53
2
HOH
HOH
215
A
HOH
54
2
HOH
HOH
216
A
HOH
55
2
HOH
HOH
217
A
HOH
56
2
HOH
HOH
218
A
HOH
57
2
HOH
HOH
219
A
HOH
58
2
HOH
HOH
220
A
HOH
61
2
HOH
HOH
221
A
HOH
62
2
HOH
HOH
222
A
HOH
64
2
HOH
HOH
223
A
HOH
65
2
HOH
HOH
224
A
HOH
66
2
HOH
HOH
225
A
HOH
67
2
HOH
HOH
226
A
HOH
68
2
HOH
HOH
227
A
HOH
69
2
HOH
HOH
228
A
HOH
70
2
HOH
HOH
229
A
HOH
71
2
HOH
HOH
230
A
HOH
72
2
HOH
HOH
231
A
HOH
73
2
HOH
HOH
232
A
HOH
75
2
HOH
HOH
233
A
HOH
76
2
HOH
HOH
234
A
HOH
78
2
HOH
HOH
235
A
HOH
79
2
HOH
HOH
236
A
HOH
81
2
HOH
HOH
237
A
HOH
82
2
HOH
HOH
238
A
HOH
83
2
HOH
HOH
239
A
HOH
85
2
HOH
HOH
240
A
HOH
86
2
HOH
HOH
241
A
HOH
87
2
HOH
HOH
242
A
HOH
88
2
HOH
HOH
243
A
HOH
90
2
HOH
HOH
244
A
HOH
91
2
HOH
HOH
245
A
HOH
92
2
HOH
HOH
246
A
HOH
94
2
HOH
HOH
247
A
HOH
95
2
HOH
HOH
248
A
HOH
96
2
HOH
HOH
249
A
HOH
97
2
HOH
HOH
250
A
HOH
98
2
HOH
HOH
251
A
HOH
99
2
HOH
HOH
252
A
HOH
100
2
HOH
HOH
253
A
HOH
102
2
HOH
HOH
254
A
HOH
106
2
HOH
HOH
255
A
HOH
107
2
HOH
HOH
256
A
HOH
110
2
HOH
HOH
257
A
HOH
111
2
HOH
HOH
258
A
HOH
112
2
HOH
HOH
259
A
HOH
113
2
HOH
HOH
260
A
HOH
114
2
HOH
HOH
261
A
HOH
116
2
HOH
HOH
262
A
HOH
119
2
HOH
HOH
263
A
HOH
120
2
HOH
HOH
264
A
HOH
122
2
HOH
HOH
265
A
HOH
123
2
HOH
HOH
266
A
HOH
124
2
HOH
HOH
267
A
HOH
125
2
HOH
HOH
268
A
HOH
126
2
HOH
HOH
269
A
HOH
128
2
HOH
HOH
270
A
HOH
130
2
HOH
HOH
271
A
HOH
131
2
HOH
HOH
272
A
HOH
132
2
HOH
HOH
273
A
HOH
134
2
HOH
HOH
274
A
HOH
136
2
HOH
HOH
275
A
HOH
137
2
HOH
HOH
276
A
HOH
138
2
HOH
HOH
277
A
HOH
139
2
HOH
HOH
278
A
HOH
140
2
HOH
HOH
279
A
HOH
141
2
HOH
HOH
280
A
HOH
142
2
HOH
HOH
281
A
HOH
143
2
HOH
HOH
282
A
HOH
144
2
HOH
HOH
283
A
HOH
146
2
HOH
HOH
284
A
HOH
147
2
HOH
HOH
285
A
GLY
44
n
1
GLY
44
A
ASN
45
n
2
ASN
45
A
PRO
46
n
3
PRO
46
A
LEU
47
n
4
LEU
47
A
VAL
48
n
5
VAL
48
A
TYR
49
n
6
TYR
49
A
LEU
50
n
7
LEU
50
A
ASP
51
n
8
ASP
51
A
VAL
52
n
9
VAL
52
A
ASP
53
n
10
ASP
53
A
ALA
54
n
11
ALA
54
A
ASN
55
n
12
ASN
55
A
GLY
56
n
13
GLY
56
A
LYS
57
n
14
LYS
57
A
PRO
58
n
15
PRO
58
A
LEU
59
n
16
LEU
59
A
GLY
60
n
17
GLY
60
A
ARG
61
n
18
ARG
61
A
VAL
62
n
19
VAL
62
A
VAL
63
n
20
VAL
63
A
LEU
64
n
21
LEU
64
A
GLU
65
n
22
GLU
65
A
LEU
66
n
23
LEU
66
A
LYS
67
n
24
LYS
67
A
ALA
68
n
25
ALA
68
A
ASP
69
n
26
ASP
69
A
VAL
70
n
27
VAL
70
A
VAL
71
n
28
VAL
71
A
PRO
72
n
29
PRO
72
A
LYS
73
n
30
LYS
73
A
THR
74
n
31
THR
74
A
ALA
75
n
32
ALA
75
A
GLU
76
n
33
GLU
76
A
ASN
77
n
34
ASN
77
A
PHE
78
n
35
PHE
78
A
ARG
79
n
36
ARG
79
A
ALA
80
n
37
ALA
80
A
LEU
81
n
38
LEU
81
A
CYS
82
n
39
CYS
82
A
THR
83
n
40
THR
83
A
GLY
84
n
41
GLY
84
A
GLU
85
n
42
GLU
85
A
LYS
86
n
43
LYS
86
A
GLY
87
n
44
GLY
87
A
PHE
88
n
45
PHE
88
A
GLY
89
n
46
GLY
89
A
TYR
90
n
47
TYR
90
A
LYS
91
n
48
LYS
91
A
GLY
92
n
49
GLY
92
A
SER
93
n
50
SER
93
A
THR
94
n
51
THR
94
A
PHE
95
n
52
PHE
95
A
HIS
96
n
53
HIS
96
A
ARG
97
n
54
ARG
97
A
VAL
98
n
55
VAL
98
A
ILE
99
n
56
ILE
99
A
PRO
100
n
57
PRO
100
A
SER
101
n
58
SER
101
A
PHE
102
n
59
PHE
102
A
MET
103
n
60
MET
103
A
CYS
104
n
61
CYS
104
A
GLN
105
n
62
GLN
105
A
ALA
106
n
63
ALA
106
A
GLY
107
n
64
GLY
107
A
ASP
108
n
65
ASP
108
A
PHE
109
n
66
PHE
109
A
THR
110
n
67
THR
110
A
ASN
111
n
68
ASN
111
A
HIS
112
n
69
HIS
112
A
ASN
113
n
70
ASN
113
A
GLY
114
n
71
GLY
114
A
THR
115
n
72
THR
115
A
GLY
116
n
73
GLY
116
A
GLY
117
n
74
GLY
117
A
LYS
118
n
75
LYS
118
A
SER
119
n
76
SER
119
A
ILE
120
n
77
ILE
120
A
TYR
121
n
78
TYR
121
A
GLY
122
n
79
GLY
122
A
SER
123
n
80
SER
123
A
ARG
124
n
81
ARG
124
A
PHE
125
n
82
PHE
125
A
PRO
126
n
83
PRO
126
A
ASP
127
n
84
ASP
127
A
GLU
128
n
85
GLU
128
A
ASN
129
n
86
ASN
129
A
PHE
130
n
87
PHE
130
A
THR
131
n
88
THR
131
A
LEU
132
n
89
LEU
132
A
LYS
133
n
90
LYS
133
A
HIS
134
n
91
HIS
134
A
VAL
135
n
92
VAL
135
A
GLY
136
n
93
GLY
136
A
PRO
137
n
94
PRO
137
A
GLY
138
n
95
GLY
138
A
VAL
139
n
96
VAL
139
A
LEU
140
n
97
LEU
140
A
SER
141
n
98
SER
141
A
MET
142
n
99
MET
142
A
ALA
143
n
100
ALA
143
A
ASN
144
n
101
ASN
144
A
ALA
145
n
102
ALA
145
A
GLY
146
n
103
GLY
146
A
PRO
147
n
104
PRO
147
A
ASN
148
n
105
ASN
148
A
THR
149
n
106
THR
149
A
ASN
150
n
107
ASN
150
A
GLY
151
n
108
GLY
151
A
SER
152
n
109
SER
152
A
GLN
153
n
110
GLN
153
A
PHE
154
n
111
PHE
154
A
PHE
155
n
112
PHE
155
A
ILE
156
n
113
ILE
156
A
CYS
157
n
114
CYS
157
A
THR
158
n
115
THR
158
A
ILE
159
n
116
ILE
159
A
LYS
160
n
117
LYS
160
A
THR
161
n
118
THR
161
A
ASP
162
n
119
ASP
162
A
TRP
163
n
120
TRP
163
A
LEU
164
n
121
LEU
164
A
ASP
165
n
122
ASP
165
A
GLY
166
n
123
GLY
166
A
LYS
167
n
124
LYS
167
A
HIS
168
n
125
HIS
168
A
VAL
169
n
126
VAL
169
A
VAL
170
n
127
VAL
170
A
PHE
171
n
128
PHE
171
A
GLY
172
n
129
GLY
172
A
HIS
173
n
130
HIS
173
A
VAL
174
n
131
VAL
174
A
ILE
175
n
132
ILE
175
A
GLU
176
n
133
GLU
176
A
GLY
177
n
134
GLY
177
A
MET
178
n
135
MET
178
A
ASP
179
n
136
ASP
179
A
VAL
180
n
137
VAL
180
A
VAL
181
n
138
VAL
181
A
LYS
182
n
139
LYS
182
A
LYS
183
n
140
LYS
183
A
ILE
184
n
141
ILE
184
A
GLU
185
n
142
GLU
185
A
SER
186
n
143
SER
186
A
PHE
187
n
144
PHE
187
A
GLY
188
n
145
GLY
188
A
SER
189
n
146
SER
189
A
LYS
190
n
147
LYS
190
A
SER
191
n
148
SER
191
A
GLY
192
n
149
GLY
192
A
ARG
193
n
150
ARG
193
A
THR
194
n
151
THR
194
A
SER
195
n
152
SER
195
A
LYS
196
n
153
LYS
196
A
LYS
197
n
154
LYS
197
A
ILE
198
n
155
ILE
198
A
VAL
199
n
156
VAL
199
A
ILE
200
n
157
ILE
200
A
THR
201
n
158
THR
201
A
ASP
202
n
159
ASP
202
A
CYS
203
n
160
CYS
203
A
GLY
204
n
161
GLY
204
A
GLN
205
n
162
GLN
205
A
LEU
206
n
163
LEU
206
A
SER
207
n
164
SER
207
A
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ARG
97
A
N
ARG
54
A
O
GLN
105
A
O
GLN
62
A
N
ALA
106
A
N
ALA
63
A
O
PHE
154
A
O
PHE
111
A
O
PHE
155
A
O
PHE
112
A
N
SER
141
A
N
SER
98
A
N
LEU
140
A
N
LEU
97
A
O
PHE
171
A
O
PHE
128
A
O
ILE
175
A
O
ILE
132
A
N
VAL
63
A
N
VAL
20
A
O
LEU
59
A
O
LEU
16
A
N
VAL
52
A
N
VAL
9
A
N
ASP
51
A
N
ASP
8
A
O
ASP
202
A
O
ASP
159
1
A
CG
LYS
57
A
CG
LYS
14
1
Y
1
A
CD
LYS
57
A
CD
LYS
14
1
Y
1
A
CE
LYS
57
A
CE
LYS
14
1
Y
1
A
NZ
LYS
57
A
NZ
LYS
14
1
Y
1
A
CG
ARG
193
A
CG
ARG
150
1
Y
1
A
CD
ARG
193
A
CD
ARG
150
1
Y
1
A
NE
ARG
193
A
NE
ARG
150
1
Y
1
A
CZ
ARG
193
A
CZ
ARG
150
1
Y
1
A
NH1
ARG
193
A
NH1
ARG
150
1
Y
1
A
NH2
ARG
193
A
NH2
ARG
150
1
Y
1
A
PHE
102
-144.24
-73.91
1
A
THR
161
-112.82
64.91
13.386
0.04
0.00
0.00
0.04
0.00
-0.08
0.974
0.966
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.1894
0.1476
0.151
0.14974
1.54
27.53
982
19640
18518
5.0
86.2
3.184
0.050
RANDOM
1,2
THROUGHOUT
2.0
isomorphous
0.086
0.80
0.80
1.20
PDB entry 2Z6W
MAXIMUM LIKELIHOOD
MASK
1.54
27.53
120
1350
0
0
1230
0.010
0.022
1294
0.001
0.020
887
1.23
1.948
1744
0.883
3.000
2180
5.790
5.000
163
29.860
24.364
55
12.807
15.000
226
15.770
15.000
5
0.079
0.200
191
0.005
0.021
1440
0.001
0.020
260
0.921
1.500
810
0.245
1.500
342
1.501
2.000
1310
2.185
3.000
484
3.209
4.500
434
0.837
3.000
2181
1.62
1196
20
1.54
28.976
3QYU
19640
18518
0.0
0.0
1,2
3.6
86.2
0.299
1.54
1.62
2.2
1,2
2.5
82.1
data collection
DNA
refinement
REFMAC
5.5.0109
data reduction
MOSFLM
data scaling
SCALA
Crystal structure of human cyclophilin D at 1.54 A resolution at room temperature
1
N
N
2
N
N
A
VAL
71
A
VAL
28
HELX_P
A
GLY
84
A
GLY
41
1
1
14
A
THR
161
A
THR
118
HELX_P
A
ASP
165
A
ASP
122
5
2
5
A
GLY
177
A
GLY
134
HELX_P
A
PHE
187
A
PHE
144
1
3
11
ISOMERASE
beta barrel, prolyl cis/trans isomerase, mitochondria, ISOMERASE
PPIF_HUMAN
UNP
1
44
P30405
GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGS
RFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGRTSKKIVITDC
GQLS
44
207
3QYU
44
207
P30405
A
1
1
164
1
LYS
engineered mutation
ILE
175
3QYU
A
P30405
UNP
175
132
8
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
PHE
95
A
PHE
52
A
ILE
99
A
ILE
56
A
MET
103
A
MET
60
A
ALA
106
A
ALA
63
A
PHE
154
A
PHE
111
A
CYS
157
A
CYS
114
A
VAL
139
A
VAL
96
A
MET
142
A
MET
99
A
VAL
170
A
VAL
127
A
GLU
176
A
GLU
133
A
LYS
57
A
LYS
14
A
LEU
66
A
LEU
23
A
LEU
47
A
LEU
4
A
ALA
54
A
ALA
11
A
ILE
198
A
ILE
155
A
GLN
205
A
GLN
162
92
P 41 21 2