0.010504
0.000000
0.000000
0.000000
0.007023
0.000000
0.000000
0.000000
0.031187
0.00000
0.00000
0.00000
Ren, X.
Hurley, J.H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
95.200
142.381
32.065
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
UK
Embo J.
EMJODG
0897
0261-4189
30
2130
2139
10.1038/emboj.2011.122
21505419
Structural basis for endosomal recruitment of ESCRT-I by ESCRT-0 in yeast.
2011
10.2210/pdb3r42/pdb
pdb_00003r42
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
mirrors
CCD
2010-10-29
MARMOSAIC 300 mm CCD
Si 111 CHANNEL
SINGLE WAVELENGTH
M
x-ray
1
1.000
1.0
22-ID
APS
1.000
SYNCHROTRON
APS BEAMLINE 22-ID
18009.535
Suppressor protein STP22 of temperature-sensitive alpha-factor receptor and arginine permease
N-terminal UEV domain (UNP residues 1-160)
C133A
1
man
polymer
1082.120
Vacuolar protein sorting-associated protein 27
PSDP peptide (UNP residues 445-453)
1
syn
polymer
18.015
water
151
nat
water
ESCRT-I complex subunit VPS23, Vacuolar protein sorting-associated protein 23
VPS27, Golgi retention defective protein 11
no
no
GAMSANGKISVPEAVVNWLFKVIQPIYNDGRTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSP
HSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPILHAWDPAAMNLIMVVQELMSLLHEPPQD
QA
GAMSANGKISVPEAVVNWLFKVIQPIYNDGRTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSP
HSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPILHAWDPAAMNLIMVVQELMSLLHEPPQD
QA
A
polypeptide(L)
no
no
QVPSDPYNY
QVPSDPYNY
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
yeast
sample
STP22, VPS23, YCL008C, YCL8C
4932
Saccharomyces cerevisiae
469008
Escherichia coli
BL21(DE3)
pGST2
1
2.85
56.78
VAPOR DIFFUSION, HANGING DROP
7.3
0.2 M sodium phosphate monobasic, 20% PEG3350, pH 7.3, VAPOR DIFFUSION, HANGING DROP, temperature 288K
288
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
software
struct_ref_seq_dif
repository
Initial release
Version format compliance
Data collection
Database references
Refinement description
1
0
2011-05-04
1
1
2011-07-13
1
2
2023-09-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_software.name
_struct_ref_seq_dif.details
the vps23 UEV domain structure
RCSB
Y
RCSB
2011-03-17
REL
REL
HOH
water
4932
yeast
Saccharomyces cerevisiae
sample
3R3Q
PDB ENTRY 3R3Q
PDB
experimental model
HOH
1
3
HOH
HOH
161
A
HOH
2
3
HOH
HOH
162
A
HOH
3
3
HOH
HOH
163
A
HOH
4
3
HOH
HOH
164
A
HOH
5
3
HOH
HOH
165
A
HOH
6
3
HOH
HOH
166
A
HOH
7
3
HOH
HOH
167
A
HOH
8
3
HOH
HOH
168
A
HOH
9
3
HOH
HOH
169
A
HOH
10
3
HOH
HOH
170
A
HOH
11
3
HOH
HOH
171
A
HOH
12
3
HOH
HOH
172
A
HOH
13
3
HOH
HOH
173
A
HOH
14
3
HOH
HOH
174
A
HOH
15
3
HOH
HOH
175
A
HOH
16
3
HOH
HOH
176
A
HOH
17
3
HOH
HOH
177
A
HOH
18
3
HOH
HOH
178
A
HOH
20
3
HOH
HOH
179
A
HOH
21
3
HOH
HOH
180
A
HOH
22
3
HOH
HOH
181
A
HOH
23
3
HOH
HOH
182
A
HOH
24
3
HOH
HOH
183
A
HOH
25
3
HOH
HOH
184
A
HOH
26
3
HOH
HOH
185
A
HOH
27
3
HOH
HOH
186
A
HOH
28
3
HOH
HOH
187
A
HOH
29
3
HOH
HOH
188
A
HOH
30
3
HOH
HOH
189
A
HOH
31
3
HOH
HOH
190
A
HOH
32
3
HOH
HOH
191
A
HOH
33
3
HOH
HOH
192
A
HOH
34
3
HOH
HOH
193
A
HOH
35
3
HOH
HOH
194
A
HOH
36
3
HOH
HOH
195
A
HOH
37
3
HOH
HOH
196
A
HOH
39
3
HOH
HOH
197
A
HOH
40
3
HOH
HOH
198
A
HOH
41
3
HOH
HOH
199
A
HOH
42
3
HOH
HOH
200
A
HOH
43
3
HOH
HOH
201
A
HOH
44
3
HOH
HOH
202
A
HOH
45
3
HOH
HOH
203
A
HOH
46
3
HOH
HOH
204
A
HOH
47
3
HOH
HOH
205
A
HOH
48
3
HOH
HOH
206
A
HOH
49
3
HOH
HOH
207
A
HOH
50
3
HOH
HOH
208
A
HOH
51
3
HOH
HOH
209
A
HOH
52
3
HOH
HOH
210
A
HOH
53
3
HOH
HOH
211
A
HOH
54
3
HOH
HOH
212
A
HOH
55
3
HOH
HOH
213
A
HOH
56
3
HOH
HOH
214
A
HOH
57
3
HOH
HOH
215
A
HOH
59
3
HOH
HOH
216
A
HOH
60
3
HOH
HOH
217
A
HOH
61
3
HOH
HOH
218
A
HOH
62
3
HOH
HOH
219
A
HOH
63
3
HOH
HOH
220
A
HOH
64
3
HOH
HOH
221
A
HOH
65
3
HOH
HOH
222
A
HOH
67
3
HOH
HOH
223
A
HOH
68
3
HOH
HOH
224
A
HOH
69
3
HOH
HOH
225
A
HOH
70
3
HOH
HOH
226
A
HOH
71
3
HOH
HOH
227
A
HOH
72
3
HOH
HOH
228
A
HOH
73
3
HOH
HOH
229
A
HOH
75
3
HOH
HOH
230
A
HOH
76
3
HOH
HOH
231
A
HOH
77
3
HOH
HOH
232
A
HOH
78
3
HOH
HOH
233
A
HOH
79
3
HOH
HOH
234
A
HOH
80
3
HOH
HOH
235
A
HOH
81
3
HOH
HOH
236
A
HOH
82
3
HOH
HOH
237
A
HOH
83
3
HOH
HOH
238
A
HOH
84
3
HOH
HOH
239
A
HOH
85
3
HOH
HOH
240
A
HOH
86
3
HOH
HOH
241
A
HOH
87
3
HOH
HOH
242
A
HOH
88
3
HOH
HOH
243
A
HOH
89
3
HOH
HOH
244
A
HOH
90
3
HOH
HOH
245
A
HOH
91
3
HOH
HOH
246
A
HOH
92
3
HOH
HOH
247
A
HOH
93
3
HOH
HOH
248
A
HOH
95
3
HOH
HOH
249
A
HOH
96
3
HOH
HOH
250
A
HOH
97
3
HOH
HOH
251
A
HOH
98
3
HOH
HOH
252
A
HOH
99
3
HOH
HOH
253
A
HOH
100
3
HOH
HOH
254
A
HOH
101
3
HOH
HOH
255
A
HOH
103
3
HOH
HOH
256
A
HOH
104
3
HOH
HOH
257
A
HOH
105
3
HOH
HOH
258
A
HOH
106
3
HOH
HOH
259
A
HOH
107
3
HOH
HOH
260
A
HOH
108
3
HOH
HOH
261
A
HOH
109
3
HOH
HOH
262
A
HOH
110
3
HOH
HOH
263
A
HOH
111
3
HOH
HOH
264
A
HOH
112
3
HOH
HOH
265
A
HOH
113
3
HOH
HOH
266
A
HOH
114
3
HOH
HOH
267
A
HOH
115
3
HOH
HOH
268
A
HOH
116
3
HOH
HOH
269
A
HOH
117
3
HOH
HOH
270
A
HOH
118
3
HOH
HOH
271
A
HOH
119
3
HOH
HOH
272
A
HOH
120
3
HOH
HOH
273
A
HOH
121
3
HOH
HOH
274
A
HOH
122
3
HOH
HOH
275
A
HOH
123
3
HOH
HOH
276
A
HOH
124
3
HOH
HOH
277
A
HOH
125
3
HOH
HOH
278
A
HOH
128
3
HOH
HOH
279
A
HOH
130
3
HOH
HOH
280
A
HOH
131
3
HOH
HOH
281
A
HOH
132
3
HOH
HOH
282
A
HOH
133
3
HOH
HOH
283
A
HOH
134
3
HOH
HOH
284
A
HOH
135
3
HOH
HOH
285
A
HOH
136
3
HOH
HOH
286
A
HOH
138
3
HOH
HOH
287
A
HOH
139
3
HOH
HOH
288
A
HOH
140
3
HOH
HOH
289
A
HOH
143
3
HOH
HOH
290
A
HOH
144
3
HOH
HOH
291
A
HOH
145
3
HOH
HOH
292
A
HOH
146
3
HOH
HOH
293
A
HOH
147
3
HOH
HOH
294
A
HOH
148
3
HOH
HOH
295
A
HOH
149
3
HOH
HOH
296
A
HOH
150
3
HOH
HOH
297
A
HOH
151
3
HOH
HOH
298
A
HOH
19
3
HOH
HOH
19
B
HOH
38
3
HOH
HOH
38
B
HOH
58
3
HOH
HOH
58
B
HOH
66
3
HOH
HOH
66
B
HOH
74
3
HOH
HOH
74
B
HOH
94
3
HOH
HOH
94
B
HOH
102
3
HOH
HOH
102
B
HOH
126
3
HOH
HOH
126
B
HOH
127
3
HOH
HOH
127
B
HOH
129
3
HOH
HOH
129
B
HOH
137
3
HOH
HOH
137
B
HOH
141
3
HOH
HOH
141
B
HOH
142
3
HOH
HOH
142
B
n
1
-1
A
n
2
0
A
n
3
1
A
n
4
2
A
n
5
3
A
n
6
4
A
GLY
5
n
7
GLY
5
A
LYS
6
n
8
LYS
6
A
ILE
7
n
9
ILE
7
A
SER
8
n
10
SER
8
A
VAL
9
n
11
VAL
9
A
PRO
10
n
12
PRO
10
A
GLU
11
n
13
GLU
11
A
ALA
12
n
14
ALA
12
A
VAL
13
n
15
VAL
13
A
VAL
14
n
16
VAL
14
A
ASN
15
n
17
ASN
15
A
TRP
16
n
18
TRP
16
A
LEU
17
n
19
LEU
17
A
PHE
18
n
20
PHE
18
A
LYS
19
n
21
LYS
19
A
VAL
20
n
22
VAL
20
A
ILE
21
n
23
ILE
21
A
GLN
22
n
24
GLN
22
A
PRO
23
n
25
PRO
23
A
ILE
24
n
26
ILE
24
A
TYR
25
n
27
TYR
25
A
ASN
26
n
28
ASN
26
A
ASP
27
n
29
ASP
27
A
GLY
28
n
30
GLY
28
A
ARG
29
n
31
ARG
29
A
THR
30
n
32
THR
30
A
THR
31
n
33
THR
31
A
PHE
32
n
34
PHE
32
A
HIS
33
n
35
HIS
33
A
ASP
34
n
36
ASP
34
A
SER
35
n
37
SER
35
A
LEU
36
n
38
LEU
36
A
ALA
37
n
39
ALA
37
A
LEU
38
n
40
LEU
38
A
LEU
39
n
41
LEU
39
A
ASP
40
n
42
ASP
40
A
ASN
41
n
43
ASN
41
A
PHE
42
n
44
PHE
42
A
HIS
43
n
45
HIS
43
A
SER
44
n
46
SER
44
A
LEU
45
n
47
LEU
45
A
ARG
46
n
48
ARG
46
A
PRO
47
n
49
PRO
47
A
ARG
48
n
50
ARG
48
A
THR
49
n
51
THR
49
A
ARG
50
n
52
ARG
50
A
VAL
51
n
53
VAL
51
A
PHE
52
n
54
PHE
52
A
THR
53
n
55
THR
53
A
HIS
54
n
56
HIS
54
A
SER
55
n
57
SER
55
A
ASP
56
n
58
ASP
56
A
GLY
57
n
59
GLY
57
A
THR
58
n
60
THR
58
A
PRO
59
n
61
PRO
59
A
GLN
60
n
62
GLN
60
A
LEU
61
n
63
LEU
61
A
LEU
62
n
64
LEU
62
A
LEU
63
n
65
LEU
63
A
SER
64
n
66
SER
64
A
ILE
65
n
67
ILE
65
A
TYR
66
n
68
TYR
66
A
GLY
67
n
69
GLY
67
A
THR
68
n
70
THR
68
A
ILE
69
n
71
ILE
69
A
SER
70
n
72
SER
70
A
THR
71
n
73
THR
71
A
GLY
72
n
74
GLY
72
A
GLU
73
n
75
GLU
73
A
ASP
74
n
76
ASP
74
A
GLY
75
n
77
GLY
75
A
SER
76
n
78
SER
76
A
SER
77
n
79
SER
77
A
PRO
78
n
80
PRO
78
A
HIS
79
n
81
HIS
79
A
SER
80
n
82
SER
80
A
ILE
81
n
83
ILE
81
A
PRO
82
n
84
PRO
82
A
VAL
83
n
85
VAL
83
A
ILE
84
n
86
ILE
84
A
MET
85
n
87
MET
85
A
TRP
86
n
88
TRP
86
A
VAL
87
n
89
VAL
87
A
PRO
88
n
90
PRO
88
A
SER
89
n
91
SER
89
A
MET
90
n
92
MET
90
A
TYR
91
n
93
TYR
91
A
PRO
92
n
94
PRO
92
A
VAL
93
n
95
VAL
93
A
LYS
94
n
96
LYS
94
A
PRO
95
n
97
PRO
95
A
PRO
96
n
98
PRO
96
A
PHE
97
n
99
PHE
97
A
ILE
98
n
100
ILE
98
A
SER
99
n
101
SER
99
A
ILE
100
n
102
ILE
100
A
ASN
101
n
103
ASN
101
A
LEU
102
n
104
LEU
102
A
GLU
103
n
105
GLU
103
A
ASN
104
n
106
ASN
104
A
PHE
105
n
107
PHE
105
A
ASP
106
n
108
ASP
106
A
MET
107
n
109
MET
107
A
ASN
108
n
110
ASN
108
A
THR
109
n
111
THR
109
A
ILE
110
n
112
ILE
110
A
SER
111
n
113
SER
111
A
SER
112
n
114
SER
112
A
SER
113
n
115
SER
113
A
LEU
114
n
116
LEU
114
A
PRO
115
n
117
PRO
115
A
ILE
116
n
118
ILE
116
A
GLN
117
n
119
GLN
117
A
GLU
118
n
120
GLU
118
A
TYR
119
n
121
TYR
119
A
ILE
120
n
122
ILE
120
A
ASP
121
n
123
ASP
121
A
SER
122
n
124
SER
122
A
ASN
123
n
125
ASN
123
A
GLY
124
n
126
GLY
124
A
TRP
125
n
127
TRP
125
A
ILE
126
n
128
ILE
126
A
ALA
127
n
129
ALA
127
A
LEU
128
n
130
LEU
128
A
PRO
129
n
131
PRO
129
A
ILE
130
n
132
ILE
130
A
LEU
131
n
133
LEU
131
A
HIS
132
n
134
HIS
132
A
ALA
133
n
135
ALA
133
A
TRP
134
n
136
TRP
134
A
ASP
135
n
137
ASP
135
A
PRO
136
n
138
PRO
136
A
ALA
137
n
139
ALA
137
A
ALA
138
n
140
ALA
138
A
MET
139
n
141
MET
139
A
ASN
140
n
142
ASN
140
A
LEU
141
n
143
LEU
141
A
ILE
142
n
144
ILE
142
A
MET
143
n
145
MET
143
A
VAL
144
n
146
VAL
144
A
VAL
145
n
147
VAL
145
A
GLN
146
n
148
GLN
146
A
GLU
147
n
149
GLU
147
A
LEU
148
n
150
LEU
148
A
MET
149
n
151
MET
149
A
SER
150
n
152
SER
150
A
LEU
151
n
153
LEU
151
A
LEU
152
n
154
LEU
152
A
HIS
153
n
155
HIS
153
A
GLU
154
n
156
GLU
154
A
PRO
155
n
157
PRO
155
A
PRO
156
n
158
PRO
156
A
GLN
157
n
159
GLN
157
A
ASP
158
n
160
ASP
158
A
GLN
159
n
161
GLN
159
A
ALA
160
n
162
ALA
160
A
GLN
445
n
1
GLN
445
B
VAL
446
n
2
VAL
446
B
PRO
447
n
3
PRO
447
B
SER
448
n
4
SER
448
B
ASP
449
n
5
ASP
449
B
PRO
450
n
6
PRO
450
B
TYR
451
n
7
TYR
451
B
ASN
452
n
8
ASN
452
B
n
9
453
B
author_and_software_defined_assembly
PISA
2
dimeric
software_defined_assembly
PISA
4
tetrameric
930
-4
9380
3610
-19
17010
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
3_555
-x,y,-z+1/2
crystal symmetry operation
0.0000000000
0.0000000000
16.0325000000
A
N
ARG
48
A
N
ARG
50
A
O
SER
64
A
O
SER
66
A
N
ILE
65
A
N
ILE
67
A
O
MET
85
A
O
MET
87
A
N
TRP
86
A
N
TRP
88
A
O
PHE
97
A
O
PHE
99
1
A
HOH
217
C
HOH
1
A
HOH
222
C
HOH
1
A
HOH
223
C
HOH
1
A
HOH
266
C
HOH
1
A
HOH
267
C
HOH
1
A
HOH
297
C
HOH
1
A
GLY
-1
A
GLY
1
1
Y
1
A
ALA
0
A
ALA
2
1
Y
1
A
MET
1
A
MET
3
1
Y
1
A
SER
2
A
SER
4
1
Y
1
A
ALA
3
A
ALA
5
1
Y
1
A
ASN
4
A
ASN
6
1
Y
1
B
TYR
453
B
TYR
9
1
Y
1
A
MET
107
-53.87
-8.10
4.1684
-0.0000
-0.0000
-2.0505
-0.0000
-2.1180
0.2025
0.1825
0.1835
1.866
30.973
900
18396
17866
5.04
95.57
0.16
RANDOM
1
0.12
MOLECULAR REPLACEMENT
17.96
0.90
1.11
PDB ENTRY 3R3Q
ML
FLAT BULK SOLVENT MODEL
60.740
0.400
1.866
30.973
151
1446
0
0
1295
0.007
1335
1.113
1831
15.121
480
0.074
207
0.006
236
0.2341
0.1804
1.9833
142
2405
83.00
0.2267
0.1760
2.1364
147
2787
96.00
0.2070
0.1734
2.3513
152
2802
97.00
0.2191
0.1808
2.6913
146
2902
98.00
0.2197
0.1815
3.3901
170
2943
100.00
0.1702
0.1835
30.9776
143
3127
100.00
21.0
1.85
50.0
3R42
18396
17866
3.0
3.0
0.124
1
14.3
3.7
99.8
0.39
1.85
1.88
4.9
1
3.0
98.8
data collection
HKL-2000
phasing
PHASER
refinement
PHENIX
(phenix.refine: 1.6_289)
refinement
autoBUSTER
data reduction
HKL-2000
data scaling
HKL-2000
Crystal structure of the yeast vps23 UEV domain in complex with a vps27 PSDP peptide
1
N
N
2
N
N
3
N
N
3
N
N
A
PRO
10
A
PRO
12
HELX_P
A
TYR
25
A
TYR
27
1
1
16
A
ASP
27
A
ASP
29
HELX_P
A
PHE
42
A
PHE
44
1
2
16
A
ASP
106
A
ASP
108
HELX_P
A
ILE
110
A
ILE
112
5
3
5
A
LEU
114
A
LEU
116
HELX_P
A
ILE
120
A
ILE
122
5
4
7
A
LEU
128
A
LEU
130
HELX_P
A
ALA
133
A
ALA
135
1
5
6
A
ASN
140
A
ASN
142
HELX_P
A
HIS
153
A
HIS
155
1
6
14
PROTEIN TRANSPORT
endosomal sorting, ESCRT, PROTEIN TRANSPORT
A
TYR
91
A
TYR
93
1
A
PRO
92
A
PRO
94
3.32
STP22_YEAST
UNP
1
1
P25604
MSANGKISVPEAVVNWLFKVIQPIYNDGRTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHS
IPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPILHCWDPAAMNLIMVVQELMSLLHEPPQDQA
VPS27_YEAST
UNP
2
445
P40343
QVPSDPYNY
1
160
3R42
1
160
P25604
A
1
3
162
445
453
3R42
445
453
P40343
B
2
1
9
1
expression tag
GLY
-1
3R42
A
P25604
UNP
1
1
expression tag
ALA
0
3R42
A
P25604
UNP
2
1
CYS
engineered mutation
ALA
133
3R42
A
P25604
UNP
133
135
4
anti-parallel
anti-parallel
anti-parallel
A
ARG
46
A
ARG
48
A
THR
53
A
THR
55
A
PRO
59
A
PRO
61
A
SER
70
A
SER
72
A
SER
80
A
SER
82
A
TRP
86
A
TRP
88
A
PHE
97
A
PHE
99
A
ILE
100
A
ILE
102
20
C 2 2 21