0.015068 0.000000 0.000000 0.000000 0.011790 0.000000 0.000000 0.000000 0.016473 0.00000 0.00000 0.00000 Page, R.C. Klenotic, P.A. Misra, S. Silverstein, R.L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 66.364 84.817 60.707 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C2 H6 O2 62.068 1,2-ETHANEDIOL ETHYLENE GLYCOL non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N C N 89 N O N 90 N C N 91 N O N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N N N 99 S C N 100 N C N 101 N O N 102 N C N 103 N C N 104 N C N 105 N O N 106 N N N 107 N O N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N N N 119 S C N 120 N C N 121 N O N 122 N C N 123 N C N 124 N C N 125 N O N 126 N O N 127 N O N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 N C N 139 N C N 140 N O N 141 N O N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N N N 148 S C N 149 N C N 150 N O N 151 N C Y 152 N C Y 153 N N Y 154 N C Y 155 N C Y 156 N N N 157 N O N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N O N 169 N H N 170 N H N 171 N N N 172 S C N 173 N C N 174 N O N 175 S C N 176 N C N 177 N C N 178 N C N 179 N O N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N N N 194 S C N 195 N C N 196 N O N 197 N C N 198 N C N 199 N C N 200 N C N 201 N O N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N N N 216 S C N 217 N C N 218 N O N 219 N C N 220 N C N 221 N C N 222 N C N 223 N N N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N N N 241 S C N 242 N C N 243 N O N 244 N C N 245 N C N 246 N S N 247 N C N 248 N O N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N N N 261 S C N 262 N C N 263 N O N 264 N C Y 265 N C Y 266 N C Y 267 N C Y 268 N C Y 269 N C Y 270 N C N 271 N O N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N N N 284 S C N 285 N C N 286 N O N 287 N C N 288 N C N 289 N C N 290 N O N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N N N 301 S C N 302 N C N 303 N O N 304 N C N 305 N O N 306 N O N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N N N 315 S C N 316 N C N 317 N O N 318 R C N 319 N O N 320 N C N 321 N O N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N N N 332 S C N 333 N C N 334 N O N 335 N C Y 336 N C Y 337 N C Y 338 N C Y 339 N N Y 340 N C Y 341 N C Y 342 N C Y 343 N C Y 344 N C N 345 N O N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N N N 359 S C N 360 N C N 361 N O N 362 N C Y 363 N C Y 364 N C Y 365 N C Y 366 N C Y 367 N C Y 368 N C N 369 N O N 370 N O N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N N N 383 S C N 384 N C N 385 N O N 386 N C N 387 N C N 388 N C N 389 N O N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N doub N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N doub N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N doub N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N doub N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N doub N 145 N sing N 146 N sing N 147 N sing N 148 N sing Y 149 N sing Y 150 N doub Y 151 N doub N 152 N sing Y 153 N sing N 154 N sing Y 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N doub N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N doub N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N doub N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N doub N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N doub N 253 N sing N 254 N sing N 255 N sing N 256 N sing Y 257 N doub Y 258 N sing Y 259 N sing N 260 N sing Y 261 N doub N 262 N sing Y 263 N doub N 264 N sing Y 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N doub N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N doub N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N doub N 322 N sing N 323 N sing N 324 N sing N 325 N sing Y 326 N doub Y 327 N sing Y 328 N sing N 329 N sing Y 330 N doub Y 331 N sing Y 332 N sing N 333 N sing Y 334 N sing Y 335 N doub N 336 N sing Y 337 N doub N 338 N sing Y 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N doub N 350 N sing N 351 N sing N 352 N sing N 353 N sing Y 354 N doub Y 355 N sing Y 356 N sing N 357 N sing Y 358 N doub N 359 N sing Y 360 N doub N 361 N sing Y 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N doub N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing US Protein Expr.Purif. PEXPEJ 0757 1046-5928 80 253 259 10.1016/j.pep.2011.07.010 21821127 Expression, purification and structural characterization of functionally replete thrombospondin-1 type 1 repeats in a bacterial expression system. 2011 10.2210/pdb3r6b/pdb pdb_00003r6b 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 93.0 1 CCD 2011-03-15 RIGAKU SATURN 944+ SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU MICROMAX-007 HF 16793.723 Thrombospondin-1 UNP residues 434-547 1 man polymer 62.068 1,2-ETHANEDIOL 8 syn non-polymer 18.015 water 94 nat water no no GAMDPEFELQDGGWSHWSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARETKACKKDACPINGGWGPWSPWDIC SVTCGGGVQKRSRLCNNPTPQFGGKDCVGDVTENQICNKQDCPLEPYTYRVRFLAKENVTQDAEDNTVSFLQP GAMDPEFELQDGGWSHWSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARETKACKKDACPINGGWGPWSPWDIC SVTCGGGVQKRSRLCNNPTPQFGGKDCVGDVTENQICNKQDCPLEPYTYRVRFLAKENVTQDAEDNTVSFLQP A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample THBS1, TSP, TSP1 9606 Homo sapiens 562 Escherichia coli plasmid pGST parallel 1 1 2.54 51.64 VAPOR DIFFUSION, SITTING DROP 5.0 0.9M sodium potassium phosphate, pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 293.0K 293.0 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_ref_seq_dif struct_site repository Initial release Database references Database references Data collection Database references Derived calculations Refinement description 1 0 2011-08-10 1 1 2011-08-17 1 2 2011-11-16 1 3 2023-09-13 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Glycosylated TSR domains 2 and 3 from a Drosophila expression system RCSB Y RCSB 2011-03-21 REL REL EDO 1,2-ETHANEDIOL HOH water 1LSL PDB ENTRY 1LSL PDB experimental model EDO 1 2 EDO EDO 1 A EDO 2 2 EDO EDO 2 A EDO 3 2 EDO EDO 3 A EDO 4 2 EDO EDO 4 A EDO 5 2 EDO EDO 5 A EDO 6 2 EDO EDO 6 A EDO 7 2 EDO EDO 7 A EDO 8 2 EDO EDO 8 A HOH 9 3 HOH HOH 9 A HOH 10 3 HOH HOH 10 A HOH 11 3 HOH HOH 11 A HOH 12 3 HOH HOH 12 A HOH 13 3 HOH HOH 13 A HOH 14 3 HOH HOH 14 A HOH 15 3 HOH HOH 15 A HOH 16 3 HOH HOH 16 A HOH 17 3 HOH HOH 17 A HOH 18 3 HOH HOH 18 A HOH 19 3 HOH HOH 19 A HOH 20 3 HOH HOH 20 A HOH 21 3 HOH HOH 21 A HOH 22 3 HOH HOH 22 A HOH 23 3 HOH HOH 23 A HOH 24 3 HOH HOH 24 A HOH 25 3 HOH HOH 25 A HOH 26 3 HOH HOH 26 A HOH 27 3 HOH HOH 27 A HOH 28 3 HOH HOH 28 A HOH 29 3 HOH HOH 29 A HOH 30 3 HOH HOH 30 A HOH 31 3 HOH HOH 31 A HOH 32 3 HOH HOH 32 A HOH 33 3 HOH HOH 33 A HOH 34 3 HOH HOH 34 A HOH 35 3 HOH HOH 35 A HOH 36 3 HOH HOH 36 A HOH 37 3 HOH HOH 37 A HOH 38 3 HOH HOH 38 A HOH 39 3 HOH HOH 39 A HOH 40 3 HOH HOH 40 A HOH 41 3 HOH HOH 41 A HOH 42 3 HOH HOH 42 A HOH 43 3 HOH HOH 43 A HOH 44 3 HOH HOH 44 A HOH 45 3 HOH HOH 45 A HOH 46 3 HOH HOH 46 A HOH 47 3 HOH HOH 47 A HOH 48 3 HOH HOH 48 A HOH 49 3 HOH HOH 49 A HOH 50 3 HOH HOH 50 A HOH 51 3 HOH HOH 51 A HOH 52 3 HOH HOH 52 A HOH 53 3 HOH HOH 53 A HOH 54 3 HOH HOH 54 A HOH 55 3 HOH HOH 55 A HOH 56 3 HOH HOH 56 A HOH 57 3 HOH HOH 57 A HOH 58 3 HOH HOH 58 A HOH 59 3 HOH HOH 59 A HOH 60 3 HOH HOH 60 A HOH 61 3 HOH HOH 61 A HOH 62 3 HOH HOH 62 A HOH 63 3 HOH HOH 63 A HOH 64 3 HOH HOH 64 A HOH 65 3 HOH HOH 65 A HOH 66 3 HOH HOH 66 A HOH 67 3 HOH HOH 67 A HOH 68 3 HOH HOH 68 A HOH 69 3 HOH HOH 69 A HOH 70 3 HOH HOH 70 A HOH 71 3 HOH HOH 71 A HOH 72 3 HOH HOH 72 A HOH 73 3 HOH HOH 73 A HOH 74 3 HOH HOH 74 A HOH 75 3 HOH HOH 75 A HOH 76 3 HOH HOH 76 A HOH 77 3 HOH HOH 77 A HOH 78 3 HOH HOH 78 A HOH 79 3 HOH HOH 79 A HOH 80 3 HOH HOH 80 A HOH 81 3 HOH HOH 81 A HOH 82 3 HOH HOH 82 A HOH 83 3 HOH HOH 83 A HOH 84 3 HOH HOH 84 A HOH 85 3 HOH HOH 85 A HOH 86 3 HOH HOH 86 A HOH 87 3 HOH HOH 87 A HOH 88 3 HOH HOH 88 A HOH 89 3 HOH HOH 89 A HOH 90 3 HOH HOH 90 A HOH 91 3 HOH HOH 91 A HOH 92 3 HOH HOH 92 A HOH 93 3 HOH HOH 93 A HOH 94 3 HOH HOH 94 A HOH 1 3 HOH HOH 578 A HOH 2 3 HOH HOH 579 A HOH 3 3 HOH HOH 580 A HOH 4 3 HOH HOH 581 A HOH 5 3 HOH HOH 582 A HOH 6 3 HOH HOH 583 A HOH 7 3 HOH HOH 584 A HOH 8 3 HOH HOH 585 A n 1 425 A n 2 426 A n 3 427 A n 4 428 A n 5 429 A n 6 430 A n 7 431 A n 8 432 A LEU 433 n 9 LEU 433 A GLN 434 n 10 GLN 434 A ASP 435 n 11 ASP 435 A GLY 436 n 12 GLY 436 A GLY 437 n 13 GLY 437 A TRP 438 n 14 TRP 438 A SER 439 n 15 SER 439 A HIS 440 n 16 HIS 440 A TRP 441 n 17 TRP 441 A SER 442 n 18 SER 442 A PRO 443 n 19 PRO 443 A TRP 444 n 20 TRP 444 A SER 445 n 21 SER 445 A SER 446 n 22 SER 446 A CYS 447 n 23 CYS 447 A SER 448 n 24 SER 448 A VAL 449 n 25 VAL 449 A THR 450 n 26 THR 450 A CYS 451 n 27 CYS 451 A GLY 452 n 28 GLY 452 A ASP 453 n 29 ASP 453 A GLY 454 n 30 GLY 454 A VAL 455 n 31 VAL 455 A ILE 456 n 32 ILE 456 A THR 457 n 33 THR 457 A ARG 458 n 34 ARG 458 A ILE 459 n 35 ILE 459 A ARG 460 n 36 ARG 460 A LEU 461 n 37 LEU 461 A CYS 462 n 38 CYS 462 A ASN 463 n 39 ASN 463 A SER 464 n 40 SER 464 A PRO 465 n 41 PRO 465 A SER 466 n 42 SER 466 A PRO 467 n 43 PRO 467 A GLN 468 n 44 GLN 468 A MET 469 n 45 MET 469 A ASN 470 n 46 ASN 470 A GLY 471 n 47 GLY 471 A LYS 472 n 48 LYS 472 A PRO 473 n 49 PRO 473 A CYS 474 n 50 CYS 474 A GLU 475 n 51 GLU 475 A GLY 476 n 52 GLY 476 A GLU 477 n 53 GLU 477 A ALA 478 n 54 ALA 478 A ARG 479 n 55 ARG 479 A GLU 480 n 56 GLU 480 A THR 481 n 57 THR 481 A LYS 482 n 58 LYS 482 A ALA 483 n 59 ALA 483 A CYS 484 n 60 CYS 484 A LYS 485 n 61 LYS 485 A LYS 486 n 62 LYS 486 A ASP 487 n 63 ASP 487 A ALA 488 n 64 ALA 488 A CYS 489 n 65 CYS 489 A PRO 490 n 66 PRO 490 A ILE 491 n 67 ILE 491 A ASN 492 n 68 ASN 492 A GLY 493 n 69 GLY 493 A GLY 494 n 70 GLY 494 A TRP 495 n 71 TRP 495 A GLY 496 n 72 GLY 496 A PRO 497 n 73 PRO 497 A TRP 498 n 74 TRP 498 A SER 499 n 75 SER 499 A PRO 500 n 76 PRO 500 A TRP 501 n 77 TRP 501 A ASP 502 n 78 ASP 502 A ILE 503 n 79 ILE 503 A CYS 504 n 80 CYS 504 A SER 505 n 81 SER 505 A VAL 506 n 82 VAL 506 A THR 507 n 83 THR 507 A CYS 508 n 84 CYS 508 A GLY 509 n 85 GLY 509 A GLY 510 n 86 GLY 510 A GLY 511 n 87 GLY 511 A VAL 512 n 88 VAL 512 A GLN 513 n 89 GLN 513 A LYS 514 n 90 LYS 514 A ARG 515 n 91 ARG 515 A SER 516 n 92 SER 516 A ARG 517 n 93 ARG 517 A LEU 518 n 94 LEU 518 A CYS 519 n 95 CYS 519 A ASN 520 n 96 ASN 520 A ASN 521 n 97 ASN 521 A PRO 522 n 98 PRO 522 A THR 523 n 99 THR 523 A PRO 524 n 100 PRO 524 A GLN 525 n 101 GLN 525 A PHE 526 n 102 PHE 526 A GLY 527 n 103 GLY 527 A GLY 528 n 104 GLY 528 A LYS 529 n 105 LYS 529 A ASP 530 n 106 ASP 530 A CYS 531 n 107 CYS 531 A VAL 532 n 108 VAL 532 A GLY 533 n 109 GLY 533 A ASP 534 n 110 ASP 534 A VAL 535 n 111 VAL 535 A THR 536 n 112 THR 536 A GLU 537 n 113 GLU 537 A ASN 538 n 114 ASN 538 A GLN 539 n 115 GLN 539 A ILE 540 n 116 ILE 540 A CYS 541 n 117 CYS 541 A ASN 542 n 118 ASN 542 A LYS 543 n 119 LYS 543 A GLN 544 n 120 GLN 544 A ASP 545 n 121 ASP 545 A CYS 546 n 122 CYS 546 A PRO 547 n 123 PRO 547 A n 124 548 A n 125 549 A n 126 550 A n 127 551 A n 128 552 A n 129 553 A n 130 554 A n 131 555 A n 132 556 A n 133 557 A n 134 558 A n 135 559 A n 136 560 A n 137 561 A n 138 562 A n 139 563 A n 140 564 A n 141 565 A n 142 566 A n 143 567 A n 144 568 A n 145 569 A n 146 570 A n 147 571 A n 148 572 A n 149 573 A n 150 574 A n 151 575 A n 152 576 A n 153 577 A 0.2391 -0.1587 0.0056 0.1060 -0.0056 0.0022 -0.2100 -0.0548 -0.1907 0.0042 -0.1173 0.0365 0.2295 -0.3345 -0.0960 0.4918 -0.1169 0.0427 0.2435 -0.1235 0.2912 refined -23.0210 -10.5834 -24.6556 X-RAY DIFFRACTION 0.1451 0.0967 0.0464 0.3520 -0.1525 0.1055 0.0761 -0.1098 -0.1413 -0.1700 0.1375 0.0435 0.2257 -0.0323 0.2395 0.2778 -0.3251 -0.1290 -0.0530 0.1449 0.3483 refined -13.1023 9.4181 -13.5351 X-RAY DIFFRACTION 1.1289 0.1310 0.7177 3.2964 2.3361 2.6046 -0.2475 0.0937 0.0821 0.0267 -0.3173 0.2751 -0.6098 0.4376 -0.1083 0.5060 -0.0944 -0.0145 0.2463 -0.0138 0.2445 refined -16.5351 2.7880 -19.0645 X-RAY DIFFRACTION 0.3511 -0.4117 -0.5186 0.5731 0.5934 0.7634 -0.0660 0.3879 -0.5880 0.2833 0.1087 0.4057 0.4637 -0.0526 0.1007 0.3363 0.0086 0.0432 0.2063 -0.1038 0.4489 refined -19.8946 -13.9251 -23.6273 X-RAY DIFFRACTION 1.1514 -0.0417 0.2806 0.7349 -0.5903 0.5338 0.0107 0.7232 -0.3833 -0.2373 -0.4028 0.1545 -0.3603 0.1163 0.1970 0.9453 0.0116 0.1717 0.5901 -0.1407 0.3781 refined -19.9091 -15.9873 -32.6103 X-RAY DIFFRACTION 0.1528 -0.1440 -0.1096 0.1543 0.1305 0.1179 -0.1266 0.0142 0.0303 -0.0479 -0.0489 -0.1691 -0.1151 0.1328 -0.2113 0.7949 -0.3084 -0.0296 0.4229 0.3254 0.3859 refined -16.9267 2.5313 -23.9940 X-RAY DIFFRACTION 0.8565 0.2692 -0.0216 1.9873 0.6440 1.7824 0.1244 -0.0428 -0.0680 -0.2119 0.2209 0.1706 0.2029 -0.0278 0.0399 0.2439 -0.1997 -0.1916 0.4534 0.1446 0.7550 refined -13.2139 18.1956 -13.9244 X-RAY DIFFRACTION 5.7507 3.0514 -1.0679 1.9307 -0.7752 0.6717 0.0975 0.6041 -0.2930 0.1539 0.0594 -0.2198 -0.2641 -0.0027 -0.0496 0.2873 -0.0201 -0.0455 0.2393 0.0078 0.3055 refined 12.4244 33.4341 -10.7244 X-RAY DIFFRACTION 0.3056 0.2597 0.0771 0.2497 0.1336 0.1950 -0.1663 -0.0058 -0.0139 -0.0301 -0.0782 0.0120 -0.0945 0.0323 -0.2794 0.3211 -0.1695 -0.1648 0.4196 0.0476 1.0472 refined 31.9323 49.9219 -5.9953 X-RAY DIFFRACTION 1.1600 1.0490 0.2671 1.3619 0.5601 0.3167 0.0411 -0.0108 -0.0707 0.1280 0.0854 0.0318 -0.0506 0.0525 0.0049 0.2864 -0.1480 -0.1048 0.4395 0.0514 0.3229 refined 25.5603 43.0904 -5.3973 X-RAY DIFFRACTION 1.4838 0.8329 0.0937 0.7091 0.0247 0.0033 0.0515 0.0073 -0.2593 0.0617 -0.3130 0.1941 0.2311 -0.2701 -1.2369 0.0905 -0.0970 -0.1090 0.2189 -0.0285 0.4029 refined 5.0404 32.2961 -10.0954 X-RAY DIFFRACTION 0.1919 0.0512 -0.2474 0.4221 0.4198 0.8628 0.2893 -0.3744 -0.4563 0.3815 -0.1297 -0.2000 0.3378 0.1344 -0.0989 0.3986 -0.1029 -0.1631 0.3790 0.1251 0.3829 refined 17.7165 35.1047 -3.7926 X-RAY DIFFRACTION 0.0891 -0.2507 -0.0733 0.7102 0.1876 0.2605 -0.0902 0.1938 -0.2881 0.1165 -0.1527 0.2780 -0.1091 0.0558 0.0150 0.3444 -0.2607 -0.1008 0.8081 0.1924 0.6351 refined 40.0513 47.7230 -4.4711 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 (chain A and resid 415:423) X-RAY DIFFRACTION 2 (chain A and resid 424:435) X-RAY DIFFRACTION 3 (chain A and resid 436:442) X-RAY DIFFRACTION 4 (chain A and resid 443:449) X-RAY DIFFRACTION 5 (chain A and resid 450:457) X-RAY DIFFRACTION 6 (chain A and resid 458:464) X-RAY DIFFRACTION 7 (chain A and resid 465:470) X-RAY DIFFRACTION 8 (chain A and resid 471:484) X-RAY DIFFRACTION 9 (chain A and resid 485:491) X-RAY DIFFRACTION 10 (chain A and resid 492:497) X-RAY DIFFRACTION 11 (chain A and resid 498:510) X-RAY DIFFRACTION 12 (chain A and resid 511:523) X-RAY DIFFRACTION 13 (chain A and resid 524:529) author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLY 454 A N GLY 30 A O CYS 484 A O CYS 60 A N ARG 458 A N ARG 34 A O GLU 480 A O GLU 56 A N ARG 515 A N ARG 91 A O GLU 537 A O GLU 113 1 A CG LEU 433 A CG LEU 9 1 Y 1 A CD1 LEU 433 A CD1 LEU 9 1 Y 1 A CD2 LEU 433 A CD2 LEU 9 1 Y 1 A GLY 425 A GLY 1 1 Y 1 A ALA 426 A ALA 2 1 Y 1 A MET 427 A MET 3 1 Y 1 A ASP 428 A ASP 4 1 Y 1 A PRO 429 A PRO 5 1 Y 1 A GLU 430 A GLU 6 1 Y 1 A PHE 431 A PHE 7 1 Y 1 A GLU 432 A GLU 8 1 Y 1 A LEU 548 A LEU 124 1 Y 1 A GLU 549 A GLU 125 1 Y 1 A PRO 550 A PRO 126 1 Y 1 A TYR 551 A TYR 127 1 Y 1 A THR 552 A THR 128 1 Y 1 A TYR 553 A TYR 129 1 Y 1 A ARG 554 A ARG 130 1 Y 1 A VAL 555 A VAL 131 1 Y 1 A ARG 556 A ARG 132 1 Y 1 A PHE 557 A PHE 133 1 Y 1 A LEU 558 A LEU 134 1 Y 1 A ALA 559 A ALA 135 1 Y 1 A LYS 560 A LYS 136 1 Y 1 A GLU 561 A GLU 137 1 Y 1 A ASN 562 A ASN 138 1 Y 1 A VAL 563 A VAL 139 1 Y 1 A THR 564 A THR 140 1 Y 1 A GLN 565 A GLN 141 1 Y 1 A ASP 566 A ASP 142 1 Y 1 A ALA 567 A ALA 143 1 Y 1 A GLU 568 A GLU 144 1 Y 1 A ASP 569 A ASP 145 1 Y 1 A ASN 570 A ASN 146 1 Y 1 A THR 571 A THR 147 1 Y 1 A VAL 572 A VAL 148 1 Y 1 A SER 573 A SER 149 1 Y 1 A PHE 574 A PHE 150 1 Y 1 A LEU 575 A LEU 151 1 Y 1 A GLN 576 A GLN 152 1 Y 1 A PRO 577 A PRO 153 1 Y 1 A A CB SG CYS CYS 508 546 1.74 -5.4604 -0.0000 0.0000 -3.2501 0.0000 8.7105 0.2729 0.2348 0.2387 0.2387 2.400 30.354 653 6519 6519 10.02 93.32 0.39 RANDOM 1 0.00 MOLECULAR REPLACEMENT 0.61 0.90 PDB ENTRY 1LSL MLHL FLAT BULK SOLVENT MODEL 58.094 0.354 2.400 30.354 94 981 32 0 855 0.008 916 1.286 1209 13.171 330 0.088 119 0.006 161 0.3781 0.3241 2.5854 125 1109 90.00 0.3810 0.2911 2.8454 130 1169 95.00 0.3082 0.2466 3.2568 129 1164 94.00 0.2507 0.2270 4.1016 127 1151 92.00 0.2286 0.2024 30.3559 142 1273 97.00 39.6 2.400 30.354 3R6B 6564 6564 0.0 0.0 0.065 1 16.6 5.8 94.0 0.227 2.40 2.49 4.7 691 1 3.84 87.6 data collection StructureStudio model building PHENIX (phenix.refine: 1.7_650) refinement PHENIX (phenix.refine: 1.7_650) data reduction d*TREK data scaling d*TREK phasing PHENIX 1.7_650 Crystal Structure of Thrombospondin-1 TSR Domains 2 and 3 1 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 3 N N disulf 2.029 A CYS 447 A SG CYS 23 1_555 A CYS 484 A SG CYS 60 1_555 disulf 2.029 A CYS 451 A SG CYS 27 1_555 A CYS 489 A SG CYS 65 1_555 disulf 2.025 A CYS 462 A SG CYS 38 1_555 A CYS 474 A SG CYS 50 1_555 disulf 2.033 A CYS 504 A SG CYS 80 1_555 A CYS 541 A SG CYS 117 1_555 disulf 2.030 A CYS 508 A SG CYS 84 1_555 A CYS 546 A SG CYS 122 1_555 disulf 2.032 A CYS 519 A SG CYS 95 1_555 A CYS 531 A SG CYS 107 1_555 CELL ADHESION Cell adhesion, Disulfide bond, EGF-like domain, TSP-1 type 1 Repeat A SER 464 A SER 40 1 A PRO 465 A PRO 41 0.27 A ASN 521 A ASN 97 1 A PRO 522 A PRO 98 4.15 TSP1_HUMAN UNP 1 434 P07996 QDGGWSHWSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARETKACKKDACPINGGWGPWSPWDICSVTCGGGVQ KRSRLCNNPTPQFGGKDCVGDVTENQICNKQDCP 434 547 3R6B 434 547 P07996 A 1 10 123 1 expression tag GLY 425 3R6B A P07996 UNP 1 1 expression tag ALA 426 3R6B A P07996 UNP 2 1 expression tag MET 427 3R6B A P07996 UNP 3 1 expression tag ASP 428 3R6B A P07996 UNP 4 1 expression tag PRO 429 3R6B A P07996 UNP 5 1 expression tag GLU 430 3R6B A P07996 UNP 6 1 expression tag PHE 431 3R6B A P07996 UNP 7 1 expression tag GLU 432 3R6B A P07996 UNP 8 1 expression tag LEU 433 3R6B A P07996 UNP 9 1 expression tag LEU 548 3R6B A P07996 UNP 124 1 expression tag GLU 549 3R6B A P07996 UNP 125 1 expression tag PRO 550 3R6B A P07996 UNP 126 1 expression tag TYR 551 3R6B A P07996 UNP 127 1 expression tag THR 552 3R6B A P07996 UNP 128 1 expression tag TYR 553 3R6B A P07996 UNP 129 1 expression tag ARG 554 3R6B A P07996 UNP 130 1 expression tag VAL 555 3R6B A P07996 UNP 131 1 expression tag ARG 556 3R6B A P07996 UNP 132 1 expression tag PHE 557 3R6B A P07996 UNP 133 1 expression tag LEU 558 3R6B A P07996 UNP 134 1 expression tag ALA 559 3R6B A P07996 UNP 135 1 expression tag LYS 560 3R6B A P07996 UNP 136 1 expression tag GLU 561 3R6B A P07996 UNP 137 1 expression tag ASN 562 3R6B A P07996 UNP 138 1 expression tag VAL 563 3R6B A P07996 UNP 139 1 expression tag THR 564 3R6B A P07996 UNP 140 1 expression tag GLN 565 3R6B A P07996 UNP 141 1 expression tag ASP 566 3R6B A P07996 UNP 142 1 expression tag ALA 567 3R6B A P07996 UNP 143 1 expression tag GLU 568 3R6B A P07996 UNP 144 1 expression tag ASP 569 3R6B A P07996 UNP 145 1 expression tag ASN 570 3R6B A P07996 UNP 146 1 expression tag THR 571 3R6B A P07996 UNP 147 1 expression tag VAL 572 3R6B A P07996 UNP 148 1 expression tag SER 573 3R6B A P07996 UNP 149 1 expression tag PHE 574 3R6B A P07996 UNP 150 1 expression tag LEU 575 3R6B A P07996 UNP 151 1 expression tag GLN 576 3R6B A P07996 UNP 152 1 expression tag PRO 577 3R6B A P07996 UNP 153 2 2 2 anti-parallel anti-parallel anti-parallel A ASP 453 A ASP 29 A GLY 454 A GLY 30 A CYS 484 A CYS 60 A LYS 485 A LYS 61 A THR 457 A THR 33 A ILE 459 A ILE 35 A ARG 479 A ARG 55 A THR 481 A THR 57 A GLY 511 A GLY 87 A SER 516 A SER 92 A THR 536 A THR 112 A CYS 541 A CYS 117 BINDING SITE FOR RESIDUE EDO A 1 A EDO 1 Software 3 BINDING SITE FOR RESIDUE EDO A 2 A EDO 2 Software 6 BINDING SITE FOR RESIDUE EDO A 3 A EDO 3 Software 3 BINDING SITE FOR RESIDUE EDO A 4 A EDO 4 Software 4 BINDING SITE FOR RESIDUE EDO A 5 A EDO 5 Software 2 BINDING SITE FOR RESIDUE EDO A 6 A EDO 6 Software 2 BINDING SITE FOR RESIDUE EDO A 7 A EDO 7 Software 2 BINDING SITE FOR RESIDUE EDO A 8 A EDO 8 Software 3 A EDO 2 C EDO 3 1_555 A HOH 34 J HOH 3 1_555 A HOH 35 J HOH 3 1_555 A EDO 1 B EDO 6 1_555 A SER 442 A SER 18 6 1_555 A TRP 444 A TRP 20 6 1_555 A ARG 458 A ARG 34 6 1_555 A LEU 518 A LEU 94 6 5_445 A HOH 583 J HOH 6 1_555 A CYS 447 A CYS 23 3 1_555 A ILE 456 A ILE 32 3 1_555 A LYS 486 A LYS 62 3 1_555 A ASN 463 A ASN 39 4 1_555 A ASP 487 A ASP 63 4 7_444 A ALA 488 A ALA 64 4 7_444 A ASN 521 A ASN 97 4 5_445 A ARG 460 A ARG 36 2 1_555 A GLU 475 A GLU 51 2 1_555 A HIS 440 A HIS 16 2 7_454 A GLN 525 A GLN 101 2 1_555 A MET 469 A MET 45 2 2_555 A ARG 517 A ARG 93 2 1_555 A HOH 39 J HOH 3 1_555 A PRO 497 A PRO 73 3 1_555 A TRP 498 A TRP 74 3 1_555 20 C 2 2 21