0.015068
0.000000
0.000000
0.000000
0.011790
0.000000
0.000000
0.000000
0.016473
0.00000
0.00000
0.00000
Page, R.C.
Klenotic, P.A.
Misra, S.
Silverstein, R.L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
66.364
84.817
60.707
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
C
N
89
N
O
N
90
N
C
N
91
N
O
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
N
N
99
S
C
N
100
N
C
N
101
N
O
N
102
N
C
N
103
N
C
N
104
N
C
N
105
N
O
N
106
N
N
N
107
N
O
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
N
N
119
S
C
N
120
N
C
N
121
N
O
N
122
N
C
N
123
N
C
N
124
N
C
N
125
N
O
N
126
N
O
N
127
N
O
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
N
C
N
139
N
C
N
140
N
O
N
141
N
O
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
N
C
Y
152
N
C
Y
153
N
N
Y
154
N
C
Y
155
N
C
Y
156
N
N
N
157
N
O
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
O
N
169
N
H
N
170
N
H
N
171
N
N
N
172
S
C
N
173
N
C
N
174
N
O
N
175
S
C
N
176
N
C
N
177
N
C
N
178
N
C
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
N
N
194
S
C
N
195
N
C
N
196
N
O
N
197
N
C
N
198
N
C
N
199
N
C
N
200
N
C
N
201
N
O
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
N
N
216
S
C
N
217
N
C
N
218
N
O
N
219
N
C
N
220
N
C
N
221
N
C
N
222
N
C
N
223
N
N
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
N
N
241
S
C
N
242
N
C
N
243
N
O
N
244
N
C
N
245
N
C
N
246
N
S
N
247
N
C
N
248
N
O
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
N
N
261
S
C
N
262
N
C
N
263
N
O
N
264
N
C
Y
265
N
C
Y
266
N
C
Y
267
N
C
Y
268
N
C
Y
269
N
C
Y
270
N
C
N
271
N
O
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
N
N
284
S
C
N
285
N
C
N
286
N
O
N
287
N
C
N
288
N
C
N
289
N
C
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
N
N
301
S
C
N
302
N
C
N
303
N
O
N
304
N
C
N
305
N
O
N
306
N
O
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
N
N
315
S
C
N
316
N
C
N
317
N
O
N
318
R
C
N
319
N
O
N
320
N
C
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
N
N
332
S
C
N
333
N
C
N
334
N
O
N
335
N
C
Y
336
N
C
Y
337
N
C
Y
338
N
C
Y
339
N
N
Y
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
C
N
345
N
O
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
N
N
359
S
C
N
360
N
C
N
361
N
O
N
362
N
C
Y
363
N
C
Y
364
N
C
Y
365
N
C
Y
366
N
C
Y
367
N
C
Y
368
N
C
N
369
N
O
N
370
N
O
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
N
N
383
S
C
N
384
N
C
N
385
N
O
N
386
N
C
N
387
N
C
N
388
N
C
N
389
N
O
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
doub
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
doub
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
Y
149
N
sing
Y
150
N
doub
Y
151
N
doub
N
152
N
sing
Y
153
N
sing
N
154
N
sing
Y
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
doub
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
doub
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
Y
257
N
doub
Y
258
N
sing
Y
259
N
sing
N
260
N
sing
Y
261
N
doub
N
262
N
sing
Y
263
N
doub
N
264
N
sing
Y
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
doub
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
doub
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
Y
326
N
doub
Y
327
N
sing
Y
328
N
sing
N
329
N
sing
Y
330
N
doub
Y
331
N
sing
Y
332
N
sing
N
333
N
sing
Y
334
N
sing
Y
335
N
doub
N
336
N
sing
Y
337
N
doub
N
338
N
sing
Y
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
Y
354
N
doub
Y
355
N
sing
Y
356
N
sing
N
357
N
sing
Y
358
N
doub
N
359
N
sing
Y
360
N
doub
N
361
N
sing
Y
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
US
Protein Expr.Purif.
PEXPEJ
0757
1046-5928
80
253
259
10.1016/j.pep.2011.07.010
21821127
Expression, purification and structural characterization of functionally replete thrombospondin-1 type 1 repeats in a bacterial expression system.
2011
10.2210/pdb3r6b/pdb
pdb_00003r6b
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
93.0
1
CCD
2011-03-15
RIGAKU SATURN 944+
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU MICROMAX-007 HF
16793.723
Thrombospondin-1
UNP residues 434-547
1
man
polymer
62.068
1,2-ETHANEDIOL
8
syn
non-polymer
18.015
water
94
nat
water
no
no
GAMDPEFELQDGGWSHWSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARETKACKKDACPINGGWGPWSPWDIC
SVTCGGGVQKRSRLCNNPTPQFGGKDCVGDVTENQICNKQDCPLEPYTYRVRFLAKENVTQDAEDNTVSFLQP
GAMDPEFELQDGGWSHWSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARETKACKKDACPINGGWGPWSPWDIC
SVTCGGGVQKRSRLCNNPTPQFGGKDCVGDVTENQICNKQDCPLEPYTYRVRFLAKENVTQDAEDNTVSFLQP
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
THBS1, TSP, TSP1
9606
Homo sapiens
562
Escherichia coli
plasmid
pGST parallel 1
1
2.54
51.64
VAPOR DIFFUSION, SITTING DROP
5.0
0.9M sodium potassium phosphate, pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 293.0K
293.0
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2011-08-10
1
1
2011-08-17
1
2
2011-11-16
1
3
2023-09-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Glycosylated TSR domains 2 and 3 from a Drosophila expression system
RCSB
Y
RCSB
2011-03-21
REL
REL
EDO
1,2-ETHANEDIOL
HOH
water
1LSL
PDB ENTRY 1LSL
PDB
experimental model
EDO
1
2
EDO
EDO
1
A
EDO
2
2
EDO
EDO
2
A
EDO
3
2
EDO
EDO
3
A
EDO
4
2
EDO
EDO
4
A
EDO
5
2
EDO
EDO
5
A
EDO
6
2
EDO
EDO
6
A
EDO
7
2
EDO
EDO
7
A
EDO
8
2
EDO
EDO
8
A
HOH
9
3
HOH
HOH
9
A
HOH
10
3
HOH
HOH
10
A
HOH
11
3
HOH
HOH
11
A
HOH
12
3
HOH
HOH
12
A
HOH
13
3
HOH
HOH
13
A
HOH
14
3
HOH
HOH
14
A
HOH
15
3
HOH
HOH
15
A
HOH
16
3
HOH
HOH
16
A
HOH
17
3
HOH
HOH
17
A
HOH
18
3
HOH
HOH
18
A
HOH
19
3
HOH
HOH
19
A
HOH
20
3
HOH
HOH
20
A
HOH
21
3
HOH
HOH
21
A
HOH
22
3
HOH
HOH
22
A
HOH
23
3
HOH
HOH
23
A
HOH
24
3
HOH
HOH
24
A
HOH
25
3
HOH
HOH
25
A
HOH
26
3
HOH
HOH
26
A
HOH
27
3
HOH
HOH
27
A
HOH
28
3
HOH
HOH
28
A
HOH
29
3
HOH
HOH
29
A
HOH
30
3
HOH
HOH
30
A
HOH
31
3
HOH
HOH
31
A
HOH
32
3
HOH
HOH
32
A
HOH
33
3
HOH
HOH
33
A
HOH
34
3
HOH
HOH
34
A
HOH
35
3
HOH
HOH
35
A
HOH
36
3
HOH
HOH
36
A
HOH
37
3
HOH
HOH
37
A
HOH
38
3
HOH
HOH
38
A
HOH
39
3
HOH
HOH
39
A
HOH
40
3
HOH
HOH
40
A
HOH
41
3
HOH
HOH
41
A
HOH
42
3
HOH
HOH
42
A
HOH
43
3
HOH
HOH
43
A
HOH
44
3
HOH
HOH
44
A
HOH
45
3
HOH
HOH
45
A
HOH
46
3
HOH
HOH
46
A
HOH
47
3
HOH
HOH
47
A
HOH
48
3
HOH
HOH
48
A
HOH
49
3
HOH
HOH
49
A
HOH
50
3
HOH
HOH
50
A
HOH
51
3
HOH
HOH
51
A
HOH
52
3
HOH
HOH
52
A
HOH
53
3
HOH
HOH
53
A
HOH
54
3
HOH
HOH
54
A
HOH
55
3
HOH
HOH
55
A
HOH
56
3
HOH
HOH
56
A
HOH
57
3
HOH
HOH
57
A
HOH
58
3
HOH
HOH
58
A
HOH
59
3
HOH
HOH
59
A
HOH
60
3
HOH
HOH
60
A
HOH
61
3
HOH
HOH
61
A
HOH
62
3
HOH
HOH
62
A
HOH
63
3
HOH
HOH
63
A
HOH
64
3
HOH
HOH
64
A
HOH
65
3
HOH
HOH
65
A
HOH
66
3
HOH
HOH
66
A
HOH
67
3
HOH
HOH
67
A
HOH
68
3
HOH
HOH
68
A
HOH
69
3
HOH
HOH
69
A
HOH
70
3
HOH
HOH
70
A
HOH
71
3
HOH
HOH
71
A
HOH
72
3
HOH
HOH
72
A
HOH
73
3
HOH
HOH
73
A
HOH
74
3
HOH
HOH
74
A
HOH
75
3
HOH
HOH
75
A
HOH
76
3
HOH
HOH
76
A
HOH
77
3
HOH
HOH
77
A
HOH
78
3
HOH
HOH
78
A
HOH
79
3
HOH
HOH
79
A
HOH
80
3
HOH
HOH
80
A
HOH
81
3
HOH
HOH
81
A
HOH
82
3
HOH
HOH
82
A
HOH
83
3
HOH
HOH
83
A
HOH
84
3
HOH
HOH
84
A
HOH
85
3
HOH
HOH
85
A
HOH
86
3
HOH
HOH
86
A
HOH
87
3
HOH
HOH
87
A
HOH
88
3
HOH
HOH
88
A
HOH
89
3
HOH
HOH
89
A
HOH
90
3
HOH
HOH
90
A
HOH
91
3
HOH
HOH
91
A
HOH
92
3
HOH
HOH
92
A
HOH
93
3
HOH
HOH
93
A
HOH
94
3
HOH
HOH
94
A
HOH
1
3
HOH
HOH
578
A
HOH
2
3
HOH
HOH
579
A
HOH
3
3
HOH
HOH
580
A
HOH
4
3
HOH
HOH
581
A
HOH
5
3
HOH
HOH
582
A
HOH
6
3
HOH
HOH
583
A
HOH
7
3
HOH
HOH
584
A
HOH
8
3
HOH
HOH
585
A
n
1
425
A
n
2
426
A
n
3
427
A
n
4
428
A
n
5
429
A
n
6
430
A
n
7
431
A
n
8
432
A
LEU
433
n
9
LEU
433
A
GLN
434
n
10
GLN
434
A
ASP
435
n
11
ASP
435
A
GLY
436
n
12
GLY
436
A
GLY
437
n
13
GLY
437
A
TRP
438
n
14
TRP
438
A
SER
439
n
15
SER
439
A
HIS
440
n
16
HIS
440
A
TRP
441
n
17
TRP
441
A
SER
442
n
18
SER
442
A
PRO
443
n
19
PRO
443
A
TRP
444
n
20
TRP
444
A
SER
445
n
21
SER
445
A
SER
446
n
22
SER
446
A
CYS
447
n
23
CYS
447
A
SER
448
n
24
SER
448
A
VAL
449
n
25
VAL
449
A
THR
450
n
26
THR
450
A
CYS
451
n
27
CYS
451
A
GLY
452
n
28
GLY
452
A
ASP
453
n
29
ASP
453
A
GLY
454
n
30
GLY
454
A
VAL
455
n
31
VAL
455
A
ILE
456
n
32
ILE
456
A
THR
457
n
33
THR
457
A
ARG
458
n
34
ARG
458
A
ILE
459
n
35
ILE
459
A
ARG
460
n
36
ARG
460
A
LEU
461
n
37
LEU
461
A
CYS
462
n
38
CYS
462
A
ASN
463
n
39
ASN
463
A
SER
464
n
40
SER
464
A
PRO
465
n
41
PRO
465
A
SER
466
n
42
SER
466
A
PRO
467
n
43
PRO
467
A
GLN
468
n
44
GLN
468
A
MET
469
n
45
MET
469
A
ASN
470
n
46
ASN
470
A
GLY
471
n
47
GLY
471
A
LYS
472
n
48
LYS
472
A
PRO
473
n
49
PRO
473
A
CYS
474
n
50
CYS
474
A
GLU
475
n
51
GLU
475
A
GLY
476
n
52
GLY
476
A
GLU
477
n
53
GLU
477
A
ALA
478
n
54
ALA
478
A
ARG
479
n
55
ARG
479
A
GLU
480
n
56
GLU
480
A
THR
481
n
57
THR
481
A
LYS
482
n
58
LYS
482
A
ALA
483
n
59
ALA
483
A
CYS
484
n
60
CYS
484
A
LYS
485
n
61
LYS
485
A
LYS
486
n
62
LYS
486
A
ASP
487
n
63
ASP
487
A
ALA
488
n
64
ALA
488
A
CYS
489
n
65
CYS
489
A
PRO
490
n
66
PRO
490
A
ILE
491
n
67
ILE
491
A
ASN
492
n
68
ASN
492
A
GLY
493
n
69
GLY
493
A
GLY
494
n
70
GLY
494
A
TRP
495
n
71
TRP
495
A
GLY
496
n
72
GLY
496
A
PRO
497
n
73
PRO
497
A
TRP
498
n
74
TRP
498
A
SER
499
n
75
SER
499
A
PRO
500
n
76
PRO
500
A
TRP
501
n
77
TRP
501
A
ASP
502
n
78
ASP
502
A
ILE
503
n
79
ILE
503
A
CYS
504
n
80
CYS
504
A
SER
505
n
81
SER
505
A
VAL
506
n
82
VAL
506
A
THR
507
n
83
THR
507
A
CYS
508
n
84
CYS
508
A
GLY
509
n
85
GLY
509
A
GLY
510
n
86
GLY
510
A
GLY
511
n
87
GLY
511
A
VAL
512
n
88
VAL
512
A
GLN
513
n
89
GLN
513
A
LYS
514
n
90
LYS
514
A
ARG
515
n
91
ARG
515
A
SER
516
n
92
SER
516
A
ARG
517
n
93
ARG
517
A
LEU
518
n
94
LEU
518
A
CYS
519
n
95
CYS
519
A
ASN
520
n
96
ASN
520
A
ASN
521
n
97
ASN
521
A
PRO
522
n
98
PRO
522
A
THR
523
n
99
THR
523
A
PRO
524
n
100
PRO
524
A
GLN
525
n
101
GLN
525
A
PHE
526
n
102
PHE
526
A
GLY
527
n
103
GLY
527
A
GLY
528
n
104
GLY
528
A
LYS
529
n
105
LYS
529
A
ASP
530
n
106
ASP
530
A
CYS
531
n
107
CYS
531
A
VAL
532
n
108
VAL
532
A
GLY
533
n
109
GLY
533
A
ASP
534
n
110
ASP
534
A
VAL
535
n
111
VAL
535
A
THR
536
n
112
THR
536
A
GLU
537
n
113
GLU
537
A
ASN
538
n
114
ASN
538
A
GLN
539
n
115
GLN
539
A
ILE
540
n
116
ILE
540
A
CYS
541
n
117
CYS
541
A
ASN
542
n
118
ASN
542
A
LYS
543
n
119
LYS
543
A
GLN
544
n
120
GLN
544
A
ASP
545
n
121
ASP
545
A
CYS
546
n
122
CYS
546
A
PRO
547
n
123
PRO
547
A
n
124
548
A
n
125
549
A
n
126
550
A
n
127
551
A
n
128
552
A
n
129
553
A
n
130
554
A
n
131
555
A
n
132
556
A
n
133
557
A
n
134
558
A
n
135
559
A
n
136
560
A
n
137
561
A
n
138
562
A
n
139
563
A
n
140
564
A
n
141
565
A
n
142
566
A
n
143
567
A
n
144
568
A
n
145
569
A
n
146
570
A
n
147
571
A
n
148
572
A
n
149
573
A
n
150
574
A
n
151
575
A
n
152
576
A
n
153
577
A
0.2391
-0.1587
0.0056
0.1060
-0.0056
0.0022
-0.2100
-0.0548
-0.1907
0.0042
-0.1173
0.0365
0.2295
-0.3345
-0.0960
0.4918
-0.1169
0.0427
0.2435
-0.1235
0.2912
refined
-23.0210
-10.5834
-24.6556
X-RAY DIFFRACTION
0.1451
0.0967
0.0464
0.3520
-0.1525
0.1055
0.0761
-0.1098
-0.1413
-0.1700
0.1375
0.0435
0.2257
-0.0323
0.2395
0.2778
-0.3251
-0.1290
-0.0530
0.1449
0.3483
refined
-13.1023
9.4181
-13.5351
X-RAY DIFFRACTION
1.1289
0.1310
0.7177
3.2964
2.3361
2.6046
-0.2475
0.0937
0.0821
0.0267
-0.3173
0.2751
-0.6098
0.4376
-0.1083
0.5060
-0.0944
-0.0145
0.2463
-0.0138
0.2445
refined
-16.5351
2.7880
-19.0645
X-RAY DIFFRACTION
0.3511
-0.4117
-0.5186
0.5731
0.5934
0.7634
-0.0660
0.3879
-0.5880
0.2833
0.1087
0.4057
0.4637
-0.0526
0.1007
0.3363
0.0086
0.0432
0.2063
-0.1038
0.4489
refined
-19.8946
-13.9251
-23.6273
X-RAY DIFFRACTION
1.1514
-0.0417
0.2806
0.7349
-0.5903
0.5338
0.0107
0.7232
-0.3833
-0.2373
-0.4028
0.1545
-0.3603
0.1163
0.1970
0.9453
0.0116
0.1717
0.5901
-0.1407
0.3781
refined
-19.9091
-15.9873
-32.6103
X-RAY DIFFRACTION
0.1528
-0.1440
-0.1096
0.1543
0.1305
0.1179
-0.1266
0.0142
0.0303
-0.0479
-0.0489
-0.1691
-0.1151
0.1328
-0.2113
0.7949
-0.3084
-0.0296
0.4229
0.3254
0.3859
refined
-16.9267
2.5313
-23.9940
X-RAY DIFFRACTION
0.8565
0.2692
-0.0216
1.9873
0.6440
1.7824
0.1244
-0.0428
-0.0680
-0.2119
0.2209
0.1706
0.2029
-0.0278
0.0399
0.2439
-0.1997
-0.1916
0.4534
0.1446
0.7550
refined
-13.2139
18.1956
-13.9244
X-RAY DIFFRACTION
5.7507
3.0514
-1.0679
1.9307
-0.7752
0.6717
0.0975
0.6041
-0.2930
0.1539
0.0594
-0.2198
-0.2641
-0.0027
-0.0496
0.2873
-0.0201
-0.0455
0.2393
0.0078
0.3055
refined
12.4244
33.4341
-10.7244
X-RAY DIFFRACTION
0.3056
0.2597
0.0771
0.2497
0.1336
0.1950
-0.1663
-0.0058
-0.0139
-0.0301
-0.0782
0.0120
-0.0945
0.0323
-0.2794
0.3211
-0.1695
-0.1648
0.4196
0.0476
1.0472
refined
31.9323
49.9219
-5.9953
X-RAY DIFFRACTION
1.1600
1.0490
0.2671
1.3619
0.5601
0.3167
0.0411
-0.0108
-0.0707
0.1280
0.0854
0.0318
-0.0506
0.0525
0.0049
0.2864
-0.1480
-0.1048
0.4395
0.0514
0.3229
refined
25.5603
43.0904
-5.3973
X-RAY DIFFRACTION
1.4838
0.8329
0.0937
0.7091
0.0247
0.0033
0.0515
0.0073
-0.2593
0.0617
-0.3130
0.1941
0.2311
-0.2701
-1.2369
0.0905
-0.0970
-0.1090
0.2189
-0.0285
0.4029
refined
5.0404
32.2961
-10.0954
X-RAY DIFFRACTION
0.1919
0.0512
-0.2474
0.4221
0.4198
0.8628
0.2893
-0.3744
-0.4563
0.3815
-0.1297
-0.2000
0.3378
0.1344
-0.0989
0.3986
-0.1029
-0.1631
0.3790
0.1251
0.3829
refined
17.7165
35.1047
-3.7926
X-RAY DIFFRACTION
0.0891
-0.2507
-0.0733
0.7102
0.1876
0.2605
-0.0902
0.1938
-0.2881
0.1165
-0.1527
0.2780
-0.1091
0.0558
0.0150
0.3444
-0.2607
-0.1008
0.8081
0.1924
0.6351
refined
40.0513
47.7230
-4.4711
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
(chain A and resid 415:423)
X-RAY DIFFRACTION
2
(chain A and resid 424:435)
X-RAY DIFFRACTION
3
(chain A and resid 436:442)
X-RAY DIFFRACTION
4
(chain A and resid 443:449)
X-RAY DIFFRACTION
5
(chain A and resid 450:457)
X-RAY DIFFRACTION
6
(chain A and resid 458:464)
X-RAY DIFFRACTION
7
(chain A and resid 465:470)
X-RAY DIFFRACTION
8
(chain A and resid 471:484)
X-RAY DIFFRACTION
9
(chain A and resid 485:491)
X-RAY DIFFRACTION
10
(chain A and resid 492:497)
X-RAY DIFFRACTION
11
(chain A and resid 498:510)
X-RAY DIFFRACTION
12
(chain A and resid 511:523)
X-RAY DIFFRACTION
13
(chain A and resid 524:529)
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLY
454
A
N
GLY
30
A
O
CYS
484
A
O
CYS
60
A
N
ARG
458
A
N
ARG
34
A
O
GLU
480
A
O
GLU
56
A
N
ARG
515
A
N
ARG
91
A
O
GLU
537
A
O
GLU
113
1
A
CG
LEU
433
A
CG
LEU
9
1
Y
1
A
CD1
LEU
433
A
CD1
LEU
9
1
Y
1
A
CD2
LEU
433
A
CD2
LEU
9
1
Y
1
A
GLY
425
A
GLY
1
1
Y
1
A
ALA
426
A
ALA
2
1
Y
1
A
MET
427
A
MET
3
1
Y
1
A
ASP
428
A
ASP
4
1
Y
1
A
PRO
429
A
PRO
5
1
Y
1
A
GLU
430
A
GLU
6
1
Y
1
A
PHE
431
A
PHE
7
1
Y
1
A
GLU
432
A
GLU
8
1
Y
1
A
LEU
548
A
LEU
124
1
Y
1
A
GLU
549
A
GLU
125
1
Y
1
A
PRO
550
A
PRO
126
1
Y
1
A
TYR
551
A
TYR
127
1
Y
1
A
THR
552
A
THR
128
1
Y
1
A
TYR
553
A
TYR
129
1
Y
1
A
ARG
554
A
ARG
130
1
Y
1
A
VAL
555
A
VAL
131
1
Y
1
A
ARG
556
A
ARG
132
1
Y
1
A
PHE
557
A
PHE
133
1
Y
1
A
LEU
558
A
LEU
134
1
Y
1
A
ALA
559
A
ALA
135
1
Y
1
A
LYS
560
A
LYS
136
1
Y
1
A
GLU
561
A
GLU
137
1
Y
1
A
ASN
562
A
ASN
138
1
Y
1
A
VAL
563
A
VAL
139
1
Y
1
A
THR
564
A
THR
140
1
Y
1
A
GLN
565
A
GLN
141
1
Y
1
A
ASP
566
A
ASP
142
1
Y
1
A
ALA
567
A
ALA
143
1
Y
1
A
GLU
568
A
GLU
144
1
Y
1
A
ASP
569
A
ASP
145
1
Y
1
A
ASN
570
A
ASN
146
1
Y
1
A
THR
571
A
THR
147
1
Y
1
A
VAL
572
A
VAL
148
1
Y
1
A
SER
573
A
SER
149
1
Y
1
A
PHE
574
A
PHE
150
1
Y
1
A
LEU
575
A
LEU
151
1
Y
1
A
GLN
576
A
GLN
152
1
Y
1
A
PRO
577
A
PRO
153
1
Y
1
A
A
CB
SG
CYS
CYS
508
546
1.74
-5.4604
-0.0000
0.0000
-3.2501
0.0000
8.7105
0.2729
0.2348
0.2387
0.2387
2.400
30.354
653
6519
6519
10.02
93.32
0.39
RANDOM
1
0.00
MOLECULAR REPLACEMENT
0.61
0.90
PDB ENTRY 1LSL
MLHL
FLAT BULK SOLVENT MODEL
58.094
0.354
2.400
30.354
94
981
32
0
855
0.008
916
1.286
1209
13.171
330
0.088
119
0.006
161
0.3781
0.3241
2.5854
125
1109
90.00
0.3810
0.2911
2.8454
130
1169
95.00
0.3082
0.2466
3.2568
129
1164
94.00
0.2507
0.2270
4.1016
127
1151
92.00
0.2286
0.2024
30.3559
142
1273
97.00
39.6
2.400
30.354
3R6B
6564
6564
0.0
0.0
0.065
1
16.6
5.8
94.0
0.227
2.40
2.49
4.7
691
1
3.84
87.6
data collection
StructureStudio
model building
PHENIX
(phenix.refine: 1.7_650)
refinement
PHENIX
(phenix.refine: 1.7_650)
data reduction
d*TREK
data scaling
d*TREK
phasing
PHENIX
1.7_650
Crystal Structure of Thrombospondin-1 TSR Domains 2 and 3
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
disulf
2.029
A
CYS
447
A
SG
CYS
23
1_555
A
CYS
484
A
SG
CYS
60
1_555
disulf
2.029
A
CYS
451
A
SG
CYS
27
1_555
A
CYS
489
A
SG
CYS
65
1_555
disulf
2.025
A
CYS
462
A
SG
CYS
38
1_555
A
CYS
474
A
SG
CYS
50
1_555
disulf
2.033
A
CYS
504
A
SG
CYS
80
1_555
A
CYS
541
A
SG
CYS
117
1_555
disulf
2.030
A
CYS
508
A
SG
CYS
84
1_555
A
CYS
546
A
SG
CYS
122
1_555
disulf
2.032
A
CYS
519
A
SG
CYS
95
1_555
A
CYS
531
A
SG
CYS
107
1_555
CELL ADHESION
Cell adhesion, Disulfide bond, EGF-like domain, TSP-1 type 1 Repeat
A
SER
464
A
SER
40
1
A
PRO
465
A
PRO
41
0.27
A
ASN
521
A
ASN
97
1
A
PRO
522
A
PRO
98
4.15
TSP1_HUMAN
UNP
1
434
P07996
QDGGWSHWSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGEARETKACKKDACPINGGWGPWSPWDICSVTCGGGVQ
KRSRLCNNPTPQFGGKDCVGDVTENQICNKQDCP
434
547
3R6B
434
547
P07996
A
1
10
123
1
expression tag
GLY
425
3R6B
A
P07996
UNP
1
1
expression tag
ALA
426
3R6B
A
P07996
UNP
2
1
expression tag
MET
427
3R6B
A
P07996
UNP
3
1
expression tag
ASP
428
3R6B
A
P07996
UNP
4
1
expression tag
PRO
429
3R6B
A
P07996
UNP
5
1
expression tag
GLU
430
3R6B
A
P07996
UNP
6
1
expression tag
PHE
431
3R6B
A
P07996
UNP
7
1
expression tag
GLU
432
3R6B
A
P07996
UNP
8
1
expression tag
LEU
433
3R6B
A
P07996
UNP
9
1
expression tag
LEU
548
3R6B
A
P07996
UNP
124
1
expression tag
GLU
549
3R6B
A
P07996
UNP
125
1
expression tag
PRO
550
3R6B
A
P07996
UNP
126
1
expression tag
TYR
551
3R6B
A
P07996
UNP
127
1
expression tag
THR
552
3R6B
A
P07996
UNP
128
1
expression tag
TYR
553
3R6B
A
P07996
UNP
129
1
expression tag
ARG
554
3R6B
A
P07996
UNP
130
1
expression tag
VAL
555
3R6B
A
P07996
UNP
131
1
expression tag
ARG
556
3R6B
A
P07996
UNP
132
1
expression tag
PHE
557
3R6B
A
P07996
UNP
133
1
expression tag
LEU
558
3R6B
A
P07996
UNP
134
1
expression tag
ALA
559
3R6B
A
P07996
UNP
135
1
expression tag
LYS
560
3R6B
A
P07996
UNP
136
1
expression tag
GLU
561
3R6B
A
P07996
UNP
137
1
expression tag
ASN
562
3R6B
A
P07996
UNP
138
1
expression tag
VAL
563
3R6B
A
P07996
UNP
139
1
expression tag
THR
564
3R6B
A
P07996
UNP
140
1
expression tag
GLN
565
3R6B
A
P07996
UNP
141
1
expression tag
ASP
566
3R6B
A
P07996
UNP
142
1
expression tag
ALA
567
3R6B
A
P07996
UNP
143
1
expression tag
GLU
568
3R6B
A
P07996
UNP
144
1
expression tag
ASP
569
3R6B
A
P07996
UNP
145
1
expression tag
ASN
570
3R6B
A
P07996
UNP
146
1
expression tag
THR
571
3R6B
A
P07996
UNP
147
1
expression tag
VAL
572
3R6B
A
P07996
UNP
148
1
expression tag
SER
573
3R6B
A
P07996
UNP
149
1
expression tag
PHE
574
3R6B
A
P07996
UNP
150
1
expression tag
LEU
575
3R6B
A
P07996
UNP
151
1
expression tag
GLN
576
3R6B
A
P07996
UNP
152
1
expression tag
PRO
577
3R6B
A
P07996
UNP
153
2
2
2
anti-parallel
anti-parallel
anti-parallel
A
ASP
453
A
ASP
29
A
GLY
454
A
GLY
30
A
CYS
484
A
CYS
60
A
LYS
485
A
LYS
61
A
THR
457
A
THR
33
A
ILE
459
A
ILE
35
A
ARG
479
A
ARG
55
A
THR
481
A
THR
57
A
GLY
511
A
GLY
87
A
SER
516
A
SER
92
A
THR
536
A
THR
112
A
CYS
541
A
CYS
117
BINDING SITE FOR RESIDUE EDO A 1
A
EDO
1
Software
3
BINDING SITE FOR RESIDUE EDO A 2
A
EDO
2
Software
6
BINDING SITE FOR RESIDUE EDO A 3
A
EDO
3
Software
3
BINDING SITE FOR RESIDUE EDO A 4
A
EDO
4
Software
4
BINDING SITE FOR RESIDUE EDO A 5
A
EDO
5
Software
2
BINDING SITE FOR RESIDUE EDO A 6
A
EDO
6
Software
2
BINDING SITE FOR RESIDUE EDO A 7
A
EDO
7
Software
2
BINDING SITE FOR RESIDUE EDO A 8
A
EDO
8
Software
3
A
EDO
2
C
EDO
3
1_555
A
HOH
34
J
HOH
3
1_555
A
HOH
35
J
HOH
3
1_555
A
EDO
1
B
EDO
6
1_555
A
SER
442
A
SER
18
6
1_555
A
TRP
444
A
TRP
20
6
1_555
A
ARG
458
A
ARG
34
6
1_555
A
LEU
518
A
LEU
94
6
5_445
A
HOH
583
J
HOH
6
1_555
A
CYS
447
A
CYS
23
3
1_555
A
ILE
456
A
ILE
32
3
1_555
A
LYS
486
A
LYS
62
3
1_555
A
ASN
463
A
ASN
39
4
1_555
A
ASP
487
A
ASP
63
4
7_444
A
ALA
488
A
ALA
64
4
7_444
A
ASN
521
A
ASN
97
4
5_445
A
ARG
460
A
ARG
36
2
1_555
A
GLU
475
A
GLU
51
2
1_555
A
HIS
440
A
HIS
16
2
7_454
A
GLN
525
A
GLN
101
2
1_555
A
MET
469
A
MET
45
2
2_555
A
ARG
517
A
ARG
93
2
1_555
A
HOH
39
J
HOH
3
1_555
A
PRO
497
A
PRO
73
3
1_555
A
TRP
498
A
TRP
74
3
1_555
20
C 2 2 21