0.011248 0.000000 0.003482 0.000000 0.028571 0.000000 0.000000 0.000000 0.017864 0.00000 0.00000 0.00000 Dumas, J.J. Zhu, Z. Connolly, J.L. Lambright, D.G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 107.20 90.00 88.900 35.000 58.600 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C10 H17 N6 O13 P3 522.196 PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N P N 138 N O N 139 N O N 140 N O N 141 N N N 142 R P N 143 N O N 144 N O N 145 N O N 146 S P N 147 N O N 148 N O N 149 N O N 150 N C N 151 R C N 152 N O N 153 S C N 154 N O N 155 R C N 156 N O N 157 R C Y 158 N N Y 159 N C Y 160 N N Y 161 N C Y 162 N C N 163 N O Y 164 N N Y 165 N C N 166 N N Y 167 N N Y 168 N C N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N N N 187 S C N 188 N C N 189 N O N 190 N C Y 191 N C Y 192 N N Y 193 N C Y 194 N C Y 195 N N N 196 N O N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N O N 208 N H N 209 N H N 210 N N N 211 S C N 212 N C N 213 N O N 214 S C N 215 N C N 216 N C N 217 N C N 218 N O N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N N N 233 S C N 234 N C N 235 N O N 236 N C N 237 N C N 238 N C N 239 N C N 240 N O N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N N N 255 S C N 256 N C N 257 N O N 258 N C N 259 N C N 260 N C N 261 N C N 262 N N N 263 N O N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N N N 280 S C N 281 N C N 282 N O N 283 N C N 284 N C N 285 N S N 286 N C N 287 N O N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N MG N 300 N N N 301 S C N 302 N C N 303 N O N 304 N C Y 305 N C Y 306 N C Y 307 N C Y 308 N C Y 309 N C Y 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N N N 324 S C N 325 N C N 326 N O N 327 N C N 328 N C N 329 N C N 330 N O N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N N N 341 S C N 342 N C N 343 N O N 344 N C N 345 N O N 346 N O N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N N N 355 S C N 356 N C N 357 N O N 358 R C N 359 N O N 360 N C N 361 N O N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N N N 372 S C N 373 N C N 374 N O N 375 N C Y 376 N C Y 377 N C Y 378 N C Y 379 N N Y 380 N C Y 381 N C Y 382 N C Y 383 N C Y 384 N C N 385 N O N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N N N 399 S C N 400 N C N 401 N O N 402 N C Y 403 N C Y 404 N C Y 405 N C Y 406 N C Y 407 N C Y 408 N C N 409 N O N 410 N O N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N N N 423 S C N 424 N C N 425 N O N 426 N C N 427 N C N 428 N C N 429 N O N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N doub N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N doub N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing Y 164 N sing Y 165 N sing Y 166 N doub N 167 N sing Y 168 N sing Y 169 N sing Y 170 N doub N 171 N doub Y 172 N sing Y 173 N sing N 174 N sing N 175 N sing Y 176 N doub N 177 N sing N 178 N sing Y 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing Y 191 N sing Y 192 N doub Y 193 N doub N 194 N sing Y 195 N sing N 196 N sing Y 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N doub N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N doub N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N doub N 295 N sing N 296 N sing N 297 N sing N 298 N sing Y 299 N doub Y 300 N sing Y 301 N sing N 302 N sing Y 303 N doub N 304 N sing Y 305 N doub N 306 N sing Y 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N doub N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N doub N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N doub N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N doub N 364 N sing N 365 N sing N 366 N sing N 367 N sing Y 368 N doub Y 369 N sing Y 370 N sing N 371 N sing Y 372 N doub Y 373 N sing Y 374 N sing N 375 N sing Y 376 N sing Y 377 N doub N 378 N sing Y 379 N doub N 380 N sing Y 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N doub N 392 N sing N 393 N sing N 394 N sing N 395 N sing Y 396 N doub Y 397 N sing Y 398 N sing N 399 N sing Y 400 N doub N 401 N sing Y 402 N doub N 403 N sing Y 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N doub N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing UK Structure Fold.Des. FODEFH 1263 0969-2126 7 413 423 10.1016/S0969-2126(99)80054-9 10196122 Structural basis of activation and GTP hydrolysis in Rab proteins. 1999 10.2210/pdb3rab/pdb pdb_00003rab 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 MIRRORS IMAGE PLATE 1997-12 MARRESEARCH SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU200 19655.135 PROTEIN (RAB3A) GTPASE DOMAIN 1 man polymer 24.305 MAGNESIUM ION 1 syn non-polymer 522.196 PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER 1 syn non-polymer 18.015 water 123 nat water no no NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMG FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE RLVDVICEK NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMG FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE RLVDVICEK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Norway rat Rattus Escherichia Escherichia coli sample 10116 BRAIN Rattus norvegicus 469008 Escherichia coli BL21(DE3) BL21/DE3 PGEX 1 2.22 44.0 6.5 CRYSTALLIZATION CONDITIONS: 14%PEG-8000,50 MM NAMES, PH 6.5, 200 MM NACL chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Refinement description 1 0 1999-04-16 1 1 2008-04-26 1 2 2011-07-13 1 3 2023-09-13 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id BNL Y RCSB 1998-11-16 REL REL MG MAGNESIUM ION GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HOH water 5P21 PDB experimental model MG 201 2 MG MG 201 A GNP 200 3 GNP GNP 200 A HOH 300 4 HOH HOH 300 A HOH 301 4 HOH HOH 301 A HOH 302 4 HOH HOH 302 A HOH 303 4 HOH HOH 303 A HOH 304 4 HOH HOH 304 A HOH 305 4 HOH HOH 305 A HOH 306 4 HOH HOH 306 A HOH 307 4 HOH HOH 307 A HOH 308 4 HOH HOH 308 A HOH 309 4 HOH HOH 309 A HOH 310 4 HOH HOH 310 A HOH 312 4 HOH HOH 312 A HOH 313 4 HOH HOH 313 A HOH 314 4 HOH HOH 314 A HOH 315 4 HOH HOH 315 A HOH 316 4 HOH HOH 316 A HOH 317 4 HOH HOH 317 A HOH 318 4 HOH HOH 318 A HOH 319 4 HOH HOH 319 A HOH 320 4 HOH HOH 320 A HOH 321 4 HOH HOH 321 A HOH 322 4 HOH HOH 322 A HOH 323 4 HOH HOH 323 A HOH 324 4 HOH HOH 324 A HOH 326 4 HOH HOH 326 A HOH 327 4 HOH HOH 327 A HOH 328 4 HOH HOH 328 A HOH 329 4 HOH HOH 329 A HOH 331 4 HOH HOH 331 A HOH 332 4 HOH HOH 332 A HOH 333 4 HOH HOH 333 A HOH 334 4 HOH HOH 334 A HOH 335 4 HOH HOH 335 A HOH 337 4 HOH HOH 337 A HOH 338 4 HOH HOH 338 A HOH 339 4 HOH HOH 339 A HOH 342 4 HOH HOH 342 A HOH 343 4 HOH HOH 343 A HOH 344 4 HOH HOH 344 A HOH 345 4 HOH HOH 345 A HOH 346 4 HOH HOH 346 A HOH 348 4 HOH HOH 348 A HOH 349 4 HOH HOH 349 A HOH 350 4 HOH HOH 350 A HOH 351 4 HOH HOH 351 A HOH 353 4 HOH HOH 353 A HOH 355 4 HOH HOH 355 A HOH 359 4 HOH HOH 359 A HOH 360 4 HOH HOH 360 A HOH 362 4 HOH HOH 362 A HOH 364 4 HOH HOH 364 A HOH 367 4 HOH HOH 367 A HOH 369 4 HOH HOH 369 A HOH 370 4 HOH HOH 370 A HOH 371 4 HOH HOH 371 A HOH 373 4 HOH HOH 373 A HOH 374 4 HOH HOH 374 A HOH 375 4 HOH HOH 375 A HOH 377 4 HOH HOH 377 A HOH 378 4 HOH HOH 378 A HOH 380 4 HOH HOH 380 A HOH 383 4 HOH HOH 383 A HOH 384 4 HOH HOH 384 A HOH 386 4 HOH HOH 386 A HOH 387 4 HOH HOH 387 A HOH 390 4 HOH HOH 390 A HOH 395 4 HOH HOH 395 A HOH 398 4 HOH HOH 398 A HOH 399 4 HOH HOH 399 A HOH 403 4 HOH HOH 403 A HOH 406 4 HOH HOH 406 A HOH 502 4 HOH HOH 502 A HOH 504 4 HOH HOH 504 A HOH 505 4 HOH HOH 505 A HOH 506 4 HOH HOH 506 A HOH 507 4 HOH HOH 507 A HOH 509 4 HOH HOH 509 A HOH 510 4 HOH HOH 510 A HOH 512 4 HOH HOH 512 A HOH 513 4 HOH HOH 513 A HOH 515 4 HOH HOH 515 A HOH 517 4 HOH HOH 517 A HOH 518 4 HOH HOH 518 A HOH 519 4 HOH HOH 519 A HOH 521 4 HOH HOH 521 A HOH 523 4 HOH HOH 523 A HOH 524 4 HOH HOH 524 A HOH 525 4 HOH HOH 525 A HOH 526 4 HOH HOH 526 A HOH 528 4 HOH HOH 528 A HOH 529 4 HOH HOH 529 A HOH 531 4 HOH HOH 531 A HOH 535 4 HOH HOH 535 A HOH 537 4 HOH HOH 537 A HOH 538 4 HOH HOH 538 A HOH 541 4 HOH HOH 541 A HOH 542 4 HOH HOH 542 A HOH 543 4 HOH HOH 543 A HOH 547 4 HOH HOH 547 A HOH 548 4 HOH HOH 548 A HOH 549 4 HOH HOH 549 A HOH 551 4 HOH HOH 551 A HOH 554 4 HOH HOH 554 A HOH 556 4 HOH HOH 556 A HOH 558 4 HOH HOH 558 A HOH 559 4 HOH HOH 559 A HOH 560 4 HOH HOH 560 A HOH 561 4 HOH HOH 561 A HOH 564 4 HOH HOH 564 A HOH 565 4 HOH HOH 565 A HOH 566 4 HOH HOH 566 A HOH 568 4 HOH HOH 568 A HOH 571 4 HOH HOH 571 A HOH 572 4 HOH HOH 572 A HOH 576 4 HOH HOH 576 A HOH 577 4 HOH HOH 577 A HOH 579 4 HOH HOH 579 A HOH 580 4 HOH HOH 580 A HOH 582 4 HOH HOH 582 A HOH 584 4 HOH HOH 584 A HOH 586 4 HOH HOH 586 A HOH 587 4 HOH HOH 587 A HOH 588 4 HOH HOH 588 A ASN 18 n 1 ASN 18 A PHE 19 n 2 PHE 19 A ASP 20 n 3 ASP 20 A TYR 21 n 4 TYR 21 A MET 22 n 5 MET 22 A PHE 23 n 6 PHE 23 A LYS 24 n 7 LYS 24 A ILE 25 n 8 ILE 25 A LEU 26 n 9 LEU 26 A ILE 27 n 10 ILE 27 A ILE 28 n 11 ILE 28 A GLY 29 n 12 GLY 29 A ASN 30 n 13 ASN 30 A SER 31 n 14 SER 31 A SER 32 n 15 SER 32 A VAL 33 n 16 VAL 33 A GLY 34 n 17 GLY 34 A LYS 35 n 18 LYS 35 A THR 36 n 19 THR 36 A SER 37 n 20 SER 37 A PHE 38 n 21 PHE 38 A LEU 39 n 22 LEU 39 A PHE 40 n 23 PHE 40 A ARG 41 n 24 ARG 41 A TYR 42 n 25 TYR 42 A ALA 43 n 26 ALA 43 A ASP 44 n 27 ASP 44 A ASP 45 n 28 ASP 45 A SER 46 n 29 SER 46 A PHE 47 n 30 PHE 47 A THR 48 n 31 THR 48 A PRO 49 n 32 PRO 49 A ALA 50 n 33 ALA 50 A PHE 51 n 34 PHE 51 A VAL 52 n 35 VAL 52 A SER 53 n 36 SER 53 A THR 54 n 37 THR 54 A VAL 55 n 38 VAL 55 A GLY 56 n 39 GLY 56 A ILE 57 n 40 ILE 57 A ASP 58 n 41 ASP 58 A PHE 59 n 42 PHE 59 A LYS 60 n 43 LYS 60 A VAL 61 n 44 VAL 61 A LYS 62 n 45 LYS 62 A THR 63 n 46 THR 63 A ILE 64 n 47 ILE 64 A TYR 65 n 48 TYR 65 A ARG 66 n 49 ARG 66 A ASN 67 n 50 ASN 67 A ASP 68 n 51 ASP 68 A LYS 69 n 52 LYS 69 A ARG 70 n 53 ARG 70 A ILE 71 n 54 ILE 71 A LYS 72 n 55 LYS 72 A LEU 73 n 56 LEU 73 A GLN 74 n 57 GLN 74 A ILE 75 n 58 ILE 75 A TRP 76 n 59 TRP 76 A ASP 77 n 60 ASP 77 A THR 78 n 61 THR 78 A ALA 79 n 62 ALA 79 A GLY 80 n 63 GLY 80 A GLN 81 n 64 GLN 81 A GLU 82 n 65 GLU 82 A ARG 83 n 66 ARG 83 A TYR 84 n 67 TYR 84 A ARG 85 n 68 ARG 85 A THR 86 n 69 THR 86 A ILE 87 n 70 ILE 87 A THR 88 n 71 THR 88 A THR 89 n 72 THR 89 A ALA 90 n 73 ALA 90 A TYR 91 n 74 TYR 91 A TYR 92 n 75 TYR 92 A ARG 93 n 76 ARG 93 A GLY 94 n 77 GLY 94 A ALA 95 n 78 ALA 95 A MET 96 n 79 MET 96 A GLY 97 n 80 GLY 97 A PHE 98 n 81 PHE 98 A ILE 99 n 82 ILE 99 A LEU 100 n 83 LEU 100 A MET 101 n 84 MET 101 A TYR 102 n 85 TYR 102 A ASP 103 n 86 ASP 103 A ILE 104 n 87 ILE 104 A THR 105 n 88 THR 105 A ASN 106 n 89 ASN 106 A GLU 107 n 90 GLU 107 A GLU 108 n 91 GLU 108 A SER 109 n 92 SER 109 A PHE 110 n 93 PHE 110 A ASN 111 n 94 ASN 111 A ALA 112 n 95 ALA 112 A VAL 113 n 96 VAL 113 A GLN 114 n 97 GLN 114 A ASP 115 n 98 ASP 115 A TRP 116 n 99 TRP 116 A SER 117 n 100 SER 117 A THR 118 n 101 THR 118 A GLN 119 n 102 GLN 119 A ILE 120 n 103 ILE 120 A LYS 121 n 104 LYS 121 A THR 122 n 105 THR 122 A TYR 123 n 106 TYR 123 A SER 124 n 107 SER 124 A TRP 125 n 108 TRP 125 A ASP 126 n 109 ASP 126 A ASN 127 n 110 ASN 127 A ALA 128 n 111 ALA 128 A GLN 129 n 112 GLN 129 A VAL 130 n 113 VAL 130 A LEU 131 n 114 LEU 131 A LEU 132 n 115 LEU 132 A VAL 133 n 116 VAL 133 A GLY 134 n 117 GLY 134 A ASN 135 n 118 ASN 135 A LYS 136 n 119 LYS 136 A CYS 137 n 120 CYS 137 A ASP 138 n 121 ASP 138 A MET 139 n 122 MET 139 A GLU 140 n 123 GLU 140 A ASP 141 n 124 ASP 141 A GLU 142 n 125 GLU 142 A ARG 143 n 126 ARG 143 A VAL 144 n 127 VAL 144 A VAL 145 n 128 VAL 145 A SER 146 n 129 SER 146 A SER 147 n 130 SER 147 A GLU 148 n 131 GLU 148 A ARG 149 n 132 ARG 149 A GLY 150 n 133 GLY 150 A ARG 151 n 134 ARG 151 A GLN 152 n 135 GLN 152 A LEU 153 n 136 LEU 153 A ALA 154 n 137 ALA 154 A ASP 155 n 138 ASP 155 A HIS 156 n 139 HIS 156 A LEU 157 n 140 LEU 157 A GLY 158 n 141 GLY 158 A PHE 159 n 142 PHE 159 A GLU 160 n 143 GLU 160 A PHE 161 n 144 PHE 161 A PHE 162 n 145 PHE 162 A GLU 163 n 146 GLU 163 A ALA 164 n 147 ALA 164 A SER 165 n 148 SER 165 A ALA 166 n 149 ALA 166 A LYS 167 n 150 LYS 167 A ASP 168 n 151 ASP 168 A ASN 169 n 152 ASN 169 A ILE 170 n 153 ILE 170 A ASN 171 n 154 ASN 171 A VAL 172 n 155 VAL 172 A LYS 173 n 156 LYS 173 A GLN 174 n 157 GLN 174 A THR 175 n 158 THR 175 A PHE 176 n 159 PHE 176 A GLU 177 n 160 GLU 177 A ARG 178 n 161 ARG 178 A LEU 179 n 162 LEU 179 A VAL 180 n 163 VAL 180 A ASP 181 n 164 ASP 181 A VAL 182 n 165 VAL 182 A ILE 183 n 166 ILE 183 A CYS 184 n 167 CYS 184 A GLU 185 n 168 GLU 185 A LYS 186 n 169 LYS 186 A author_defined_assembly 1 monomeric A THR 36 A OG1 THR 19 1_555 A MG 201 B MG MG 1_555 A THR 54 A OG1 THR 37 1_555 81.2 A THR 36 A OG1 THR 19 1_555 A MG 201 B MG MG 1_555 A GNP 200 C O2G GNP 1_555 166.8 A THR 54 A OG1 THR 37 1_555 A MG 201 B MG MG 1_555 A GNP 200 C O2G GNP 1_555 89.8 A THR 36 A OG1 THR 19 1_555 A MG 201 B MG MG 1_555 A GNP 200 C O2B GNP 1_555 91.0 A THR 54 A OG1 THR 37 1_555 A MG 201 B MG MG 1_555 A GNP 200 C O2B GNP 1_555 172.1 A GNP 200 C O2G GNP 1_555 A MG 201 B MG MG 1_555 A GNP 200 C O2B GNP 1_555 98.1 A THR 36 A OG1 THR 19 1_555 A MG 201 B MG MG 1_555 A HOH 301 D O HOH 1_555 95.3 A THR 54 A OG1 THR 37 1_555 A MG 201 B MG MG 1_555 A HOH 301 D O HOH 1_555 94.3 A GNP 200 C O2G GNP 1_555 A MG 201 B MG MG 1_555 A HOH 301 D O HOH 1_555 94.9 A GNP 200 C O2B GNP 1_555 A MG 201 B MG MG 1_555 A HOH 301 D O HOH 1_555 85.3 A THR 36 A OG1 THR 19 1_555 A MG 201 B MG MG 1_555 A HOH 318 D O HOH 1_555 87.6 A THR 54 A OG1 THR 37 1_555 A MG 201 B MG MG 1_555 A HOH 318 D O HOH 1_555 91.9 A GNP 200 C O2G GNP 1_555 A MG 201 B MG MG 1_555 A HOH 318 D O HOH 1_555 83.1 A GNP 200 C O2B GNP 1_555 A MG 201 B MG MG 1_555 A HOH 318 D O HOH 1_555 88.8 A HOH 301 D O HOH 1_555 A MG 201 B MG MG 1_555 A HOH 318 D O HOH 1_555 173.5 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O GLU 160 A O GLU 143 A N LEU 132 A N LEU 115 A O GLN 129 A O GLN 112 A N PHE 98 A N PHE 81 A O GLY 97 A O GLY 80 A N LEU 26 A N LEU 9 A O TYR 21 A O TYR 4 A N LYS 72 A N LYS 55 A O LYS 69 A O LYS 52 A N ARG 66 A N ARG 49 1 A CG ASN 18 A CG ASN 1 1 Y 1 A OD1 ASN 18 A OD1 ASN 1 1 Y 1 A ND2 ASN 18 A ND2 ASN 1 1 Y 1 A CG ASN 67 A CG ASN 50 1 Y 1 A OD1 ASN 67 A OD1 ASN 50 1 Y 1 A ND2 ASN 67 A ND2 ASN 50 1 Y 1 A CG GLU 82 A CG GLU 65 1 Y 1 A CD GLU 82 A CD GLU 65 1 Y 1 A OE1 GLU 82 A OE1 GLU 65 1 Y 1 A OE2 GLU 82 A OE2 GLU 65 1 Y 1 A CG ASP 126 A CG ASP 109 1 Y 1 A OD1 ASP 126 A OD1 ASP 109 1 Y 1 A OD2 ASP 126 A OD2 ASP 109 1 Y 1 A CG ASN 127 A CG ASN 110 1 Y 1 A OD1 ASN 127 A OD1 ASN 110 1 Y 1 A ND2 ASN 127 A ND2 ASN 110 1 Y 1 A CG LYS 173 A CG LYS 156 1 Y 1 A CD LYS 173 A CD LYS 156 1 Y 1 A CE LYS 173 A CE LYS 156 1 Y 1 A NZ LYS 173 A NZ LYS 156 1 Y 1 A SG CYS 184 A SG CYS 167 1 Y 13.0 0.2370000 0.1910000 2.0 8.0 10595 5.0 99.5 RANDOM 0.0 0.0 1 THROUGHOUT 2.0 MOLECULAR REPLACEMENT 5P21 2.0 8.0 123 1520 33 0 1364 0.007 1.3 24.2 1.2 0.2300000 0.1840000 99.5 2.0 20.0 3RAB 10595 -3.0 0.0630000 1 17.1 99.5 2.0 2.1 6.3 0.1970000 99.5 phasing AMoRE refinement X-PLOR 3.1 data reduction DENZO data scaling SCALEPACK GPPNHP-BOUND RAB3A AT 2.0 A RESOLUTION 1 N N 2 N N 3 N N 4 N N A LYS 35 A LYS 18 HELX_P A ASP 44 A ASP 27 1 1 10 A GLU 82 A GLU 65 HELX_P A TYR 91 A TYR 74 1 2 10 A GLU 107 A GLU 90 HELX_P A ASN 111 A ASN 94 1 3 5 A VAL 113 A VAL 96 HELX_P A TYR 123 A TYR 106 1 4 11 A SER 147 A SER 130 HELX_P A LEU 157 A LEU 140 1 5 11 A VAL 172 A VAL 155 HELX_P A CYS 184 A CYS 167 1 6 13 metalc 2.246 A THR 36 A OG1 THR 19 1_555 A MG 201 B MG MG 1_555 metalc 2.272 A THR 54 A OG1 THR 37 1_555 A MG 201 B MG MG 1_555 metalc 2.246 A GNP 200 C O2G GNP 1_555 A MG 201 B MG MG 1_555 metalc 2.258 A GNP 200 C O2B GNP 1_555 A MG 201 B MG MG 1_555 metalc 2.332 A MG 201 B MG MG 1_555 A HOH 301 D O HOH 1_555 metalc 2.403 A MG 201 B MG MG 1_555 A HOH 318 D O HOH 1_555 HYDROLASE G PROTEIN, VESICULAR TRAFFICKING, GTP HYDROLYSIS, RAB PROTEIN, NEUROTRANSMITTER RELEASE, HYDROLASE RAB3A_RAT UNP 1 P63012 18 186 3RAB 18 186 P63012 A 1 1 169 6 parallel parallel parallel parallel anti-parallel A GLU 160 A GLU 143 A GLU 163 A GLU 146 A GLN 129 A GLN 112 A ASN 135 A ASN 118 A GLY 97 A GLY 80 A ASP 103 A ASP 86 A TYR 21 A TYR 4 A GLY 29 A GLY 12 A LYS 69 A LYS 52 A THR 78 A THR 61 A ILE 57 A ILE 40 A ARG 66 A ARG 49 BINDING SITE FOR RESIDUE MG A 201 A MG 201 Software 5 BINDING SITE FOR RESIDUE GNP A 200 A GNP 200 Software 26 A THR 36 A THR 19 5 1_555 A THR 54 A THR 37 5 1_555 A GNP 200 C GNP 5 1_555 A HOH 301 D HOH 5 1_555 A HOH 318 D HOH 5 1_555 A SER 31 A SER 14 26 1_555 A SER 32 A SER 15 26 1_555 A VAL 33 A VAL 16 26 1_555 A GLY 34 A GLY 17 26 1_555 A LYS 35 A LYS 18 26 1_555 A THR 36 A THR 19 26 1_555 A SER 37 A SER 20 26 1_555 A PHE 47 A PHE 30 26 1_555 A THR 48 A THR 31 26 1_555 A PRO 49 A PRO 32 26 1_555 A ALA 50 A ALA 33 26 1_555 A PHE 51 A PHE 34 26 1_555 A SER 53 A SER 36 26 1_555 A THR 54 A THR 37 26 1_555 A GLY 80 A GLY 63 26 1_555 A ASN 135 A ASN 118 26 1_555 A LYS 136 A LYS 119 26 1_555 A ASP 138 A ASP 121 26 1_555 A MET 139 A MET 122 26 1_555 A SER 165 A SER 148 26 1_555 A ALA 166 A ALA 149 26 1_555 A LYS 167 A LYS 150 26 1_555 A MG 201 B MG 26 1_555 A HOH 302 D HOH 26 1_555 A HOH 318 D HOH 26 1_555 A HOH 566 D HOH 26 1_555 5 C 1 2 1