0.017476 0.000000 0.000000 0.000000 0.017476 0.000000 0.000000 0.000000 0.011493 0.00000 0.00000 0.00000 Colliandre, L. Ahmed-Belkacem, H. Bessin, Y. Pawlotsky, J.M. Guichou, J.F. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 57.222 57.222 87.009 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C4 H6 N2 O 98.103 3-methyl-1,2-oxazol-5-amine non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N C N 251 N N Y 252 N C Y 253 N N Y 254 N O Y 255 N C Y 256 N C N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N N N 264 S C N 265 N C N 266 N O N 267 N C Y 268 N C Y 269 N C Y 270 N C Y 271 N C Y 272 N C Y 273 N C N 274 N O N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N N N 287 S C N 288 N C N 289 N O N 290 N C N 291 N C N 292 N C N 293 N O N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N N N 304 S C N 305 N C N 306 N O N 307 N C N 308 N O N 309 N O N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N N N 318 S C N 319 N C N 320 N O N 321 R C N 322 N O N 323 N C N 324 N O N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N N N 335 S C N 336 N C N 337 N O N 338 N C Y 339 N C Y 340 N C Y 341 N C Y 342 N N Y 343 N C Y 344 N C Y 345 N C Y 346 N C Y 347 N C N 348 N O N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N N N 362 S C N 363 N C N 364 N O N 365 N C Y 366 N C Y 367 N C Y 368 N C Y 369 N C Y 370 N C Y 371 N C N 372 N O N 373 N O N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N N N 386 S C N 387 N C N 388 N O N 389 N C N 390 N C N 391 N C N 392 N O N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing Y 239 N sing Y 240 N doub Y 241 N sing Y 242 N doub Y 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N doub N 257 N sing N 258 N sing N 259 N sing N 260 N sing Y 261 N doub Y 262 N sing Y 263 N sing N 264 N sing Y 265 N doub N 266 N sing Y 267 N doub N 268 N sing Y 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N doub N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N doub N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N doub N 326 N sing N 327 N sing N 328 N sing N 329 N sing Y 330 N doub Y 331 N sing Y 332 N sing N 333 N sing Y 334 N doub Y 335 N sing Y 336 N sing N 337 N sing Y 338 N sing Y 339 N doub N 340 N sing Y 341 N doub N 342 N sing Y 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N doub N 354 N sing N 355 N sing N 356 N sing N 357 N sing Y 358 N doub Y 359 N sing Y 360 N sing N 361 N sing Y 362 N doub N 363 N sing Y 364 N doub N 365 N sing Y 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N doub N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing UK Nat Commun 2041-1723 7 12777 12777 10.1038/ncomms12777 27652979 Fragment-based discovery of a new family of non-peptidic small-molecule cyclophilin inhibitors with potent antiviral activities. 2016 10.2210/pdb3rda/pdb pdb_00003rda 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2007-02-15 ADSC QUANTUM 4r yale mirror SINGLE WAVELENGTH M x-ray 1 0.933 1.0 ID14-2 ESRF 0.933 SYNCHROTRON ESRF BEAMLINE ID14-2 17870.400 Peptidyl-prolyl cis-trans isomerase F, mitochondrial 5.2.1.8 UNP residues 43-207 K175I 1 man polymer 98.103 3-methyl-1,2-oxazol-5-amine 7 syn non-polymer 18.015 water 351 nat water PPIase F, Cyclophilin F, Rotamase F no no MSGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIY GSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVIT DCGQLS MSGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIY GSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVIT DCGQLS X polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample PPIF, CYP3 9606 Homo sapiens 562 Escherichia coli 1 1.99 38.28 VAPOR DIFFUSION, HANGING DROP 7.3 30% PEG4000, pH 7.3, VAPOR DIFFUSION, HANGING DROP, temperature 291K 291 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_ref_seq_dif struct_site repository Initial release Database references Data collection Database references Derived calculations Refinement description 1 0 2012-03-21 1 1 2016-10-19 1 2 2023-09-13 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2011-04-01 REL REL MIO 3-methyl-1,2-oxazol-5-amine HOH water 2BIT PDB ENTRY 2BIT PDB experimental model MIO 1 2 MIO MIO 1 X MIO 1 2 MIO MIO 208 X MIO 1 2 MIO MIO 209 X MIO 1 2 MIO MIO 210 X MIO 1 2 MIO MIO 211 X MIO 1 2 MIO MIO 212 X MIO 1 2 MIO MIO 213 X HOH 2 3 HOH HOH 2 X HOH 3 3 HOH HOH 3 X HOH 4 3 HOH HOH 4 X HOH 5 3 HOH HOH 5 X HOH 6 3 HOH HOH 6 X HOH 7 3 HOH HOH 7 X HOH 8 3 HOH HOH 8 X HOH 9 3 HOH HOH 9 X HOH 10 3 HOH HOH 10 X HOH 11 3 HOH HOH 11 X HOH 12 3 HOH HOH 12 X HOH 13 3 HOH HOH 13 X HOH 14 3 HOH HOH 14 X HOH 17 3 HOH HOH 17 X HOH 18 3 HOH HOH 18 X HOH 20 3 HOH HOH 20 X HOH 21 3 HOH HOH 21 X HOH 22 3 HOH HOH 22 X HOH 24 3 HOH HOH 24 X HOH 25 3 HOH HOH 25 X HOH 26 3 HOH HOH 26 X HOH 27 3 HOH HOH 27 X HOH 28 3 HOH HOH 28 X HOH 30 3 HOH HOH 30 X HOH 31 3 HOH HOH 31 X HOH 32 3 HOH HOH 32 X HOH 33 3 HOH HOH 33 X HOH 34 3 HOH HOH 34 X HOH 35 3 HOH HOH 35 X HOH 36 3 HOH HOH 36 X HOH 37 3 HOH HOH 37 X HOH 38 3 HOH HOH 38 X HOH 39 3 HOH HOH 39 X HOH 40 3 HOH HOH 40 X HOH 41 3 HOH HOH 41 X HOH 214 3 HOH HOH 214 X HOH 215 3 HOH HOH 215 X HOH 216 3 HOH HOH 216 X HOH 217 3 HOH HOH 217 X HOH 218 3 HOH HOH 218 X HOH 42 3 HOH HOH 219 X HOH 43 3 HOH HOH 220 X HOH 221 3 HOH HOH 221 X HOH 222 3 HOH HOH 222 X HOH 223 3 HOH HOH 223 X HOH 224 3 HOH HOH 224 X HOH 225 3 HOH HOH 225 X HOH 226 3 HOH HOH 226 X HOH 227 3 HOH HOH 227 X HOH 228 3 HOH HOH 228 X HOH 229 3 HOH HOH 229 X HOH 44 3 HOH HOH 230 X HOH 231 3 HOH HOH 231 X HOH 232 3 HOH HOH 232 X HOH 233 3 HOH HOH 233 X HOH 234 3 HOH HOH 234 X HOH 235 3 HOH HOH 235 X HOH 236 3 HOH HOH 236 X HOH 237 3 HOH HOH 237 X HOH 238 3 HOH HOH 238 X HOH 239 3 HOH HOH 239 X HOH 48 3 HOH HOH 240 X HOH 241 3 HOH HOH 241 X HOH 242 3 HOH HOH 242 X HOH 243 3 HOH HOH 243 X HOH 244 3 HOH HOH 244 X HOH 245 3 HOH HOH 245 X HOH 246 3 HOH HOH 246 X HOH 247 3 HOH HOH 247 X HOH 248 3 HOH HOH 248 X HOH 249 3 HOH HOH 249 X HOH 250 3 HOH HOH 250 X HOH 251 3 HOH HOH 251 X HOH 252 3 HOH HOH 252 X HOH 253 3 HOH HOH 253 X HOH 254 3 HOH HOH 254 X HOH 49 3 HOH HOH 255 X HOH 256 3 HOH HOH 256 X HOH 257 3 HOH HOH 257 X HOH 51 3 HOH HOH 258 X HOH 53 3 HOH HOH 259 X HOH 260 3 HOH HOH 260 X HOH 261 3 HOH HOH 261 X HOH 54 3 HOH HOH 262 X HOH 263 3 HOH HOH 263 X HOH 264 3 HOH HOH 264 X HOH 265 3 HOH HOH 265 X HOH 266 3 HOH HOH 266 X HOH 55 3 HOH HOH 267 X HOH 56 3 HOH HOH 268 X HOH 269 3 HOH HOH 269 X HOH 270 3 HOH HOH 270 X HOH 271 3 HOH HOH 271 X HOH 272 3 HOH HOH 272 X HOH 273 3 HOH HOH 273 X HOH 274 3 HOH HOH 274 X HOH 275 3 HOH HOH 275 X HOH 57 3 HOH HOH 276 X HOH 277 3 HOH HOH 277 X HOH 58 3 HOH HOH 278 X HOH 279 3 HOH HOH 279 X HOH 280 3 HOH HOH 280 X HOH 281 3 HOH HOH 281 X HOH 282 3 HOH HOH 282 X HOH 283 3 HOH HOH 283 X HOH 284 3 HOH HOH 284 X HOH 285 3 HOH HOH 285 X HOH 59 3 HOH HOH 286 X HOH 61 3 HOH HOH 287 X HOH 64 3 HOH HOH 288 X HOH 289 3 HOH HOH 289 X HOH 65 3 HOH HOH 290 X HOH 291 3 HOH HOH 291 X HOH 292 3 HOH HOH 292 X HOH 293 3 HOH HOH 293 X HOH 294 3 HOH HOH 294 X HOH 295 3 HOH HOH 295 X HOH 296 3 HOH HOH 296 X HOH 297 3 HOH HOH 297 X HOH 298 3 HOH HOH 298 X HOH 66 3 HOH HOH 299 X HOH 300 3 HOH HOH 300 X HOH 301 3 HOH HOH 301 X HOH 302 3 HOH HOH 302 X HOH 303 3 HOH HOH 303 X HOH 304 3 HOH HOH 304 X HOH 305 3 HOH HOH 305 X HOH 306 3 HOH HOH 306 X HOH 307 3 HOH HOH 307 X HOH 308 3 HOH HOH 308 X HOH 309 3 HOH HOH 309 X HOH 310 3 HOH HOH 310 X HOH 311 3 HOH HOH 311 X HOH 312 3 HOH HOH 312 X HOH 313 3 HOH HOH 313 X HOH 67 3 HOH HOH 314 X HOH 315 3 HOH HOH 315 X HOH 316 3 HOH HOH 316 X HOH 317 3 HOH HOH 317 X HOH 318 3 HOH HOH 318 X HOH 319 3 HOH HOH 319 X HOH 68 3 HOH HOH 320 X HOH 321 3 HOH HOH 321 X HOH 322 3 HOH HOH 322 X HOH 69 3 HOH HOH 323 X HOH 324 3 HOH HOH 324 X HOH 325 3 HOH HOH 325 X HOH 326 3 HOH HOH 326 X HOH 327 3 HOH HOH 327 X HOH 70 3 HOH HOH 328 X HOH 329 3 HOH HOH 329 X HOH 330 3 HOH HOH 330 X HOH 331 3 HOH HOH 331 X HOH 332 3 HOH HOH 332 X HOH 333 3 HOH HOH 333 X HOH 334 3 HOH HOH 334 X HOH 335 3 HOH HOH 335 X HOH 336 3 HOH HOH 336 X HOH 337 3 HOH HOH 337 X HOH 71 3 HOH HOH 338 X HOH 339 3 HOH HOH 339 X HOH 340 3 HOH HOH 340 X HOH 341 3 HOH HOH 341 X HOH 342 3 HOH HOH 342 X HOH 343 3 HOH HOH 343 X HOH 344 3 HOH HOH 344 X HOH 345 3 HOH HOH 345 X HOH 72 3 HOH HOH 346 X HOH 347 3 HOH HOH 347 X HOH 348 3 HOH HOH 348 X HOH 73 3 HOH HOH 349 X HOH 350 3 HOH HOH 350 X HOH 351 3 HOH HOH 351 X HOH 352 3 HOH HOH 352 X HOH 353 3 HOH HOH 353 X HOH 354 3 HOH HOH 354 X HOH 355 3 HOH HOH 355 X HOH 356 3 HOH HOH 356 X HOH 74 3 HOH HOH 357 X HOH 358 3 HOH HOH 358 X HOH 359 3 HOH HOH 359 X HOH 360 3 HOH HOH 360 X HOH 361 3 HOH HOH 361 X HOH 362 3 HOH HOH 362 X HOH 363 3 HOH HOH 363 X HOH 364 3 HOH HOH 364 X HOH 365 3 HOH HOH 365 X HOH 366 3 HOH HOH 366 X HOH 367 3 HOH HOH 367 X HOH 368 3 HOH HOH 368 X HOH 369 3 HOH HOH 369 X HOH 370 3 HOH HOH 370 X HOH 371 3 HOH HOH 371 X HOH 372 3 HOH HOH 372 X HOH 373 3 HOH HOH 373 X HOH 374 3 HOH HOH 374 X HOH 375 3 HOH HOH 375 X HOH 376 3 HOH HOH 376 X HOH 377 3 HOH HOH 377 X HOH 378 3 HOH HOH 378 X HOH 379 3 HOH HOH 379 X HOH 380 3 HOH HOH 380 X HOH 381 3 HOH HOH 381 X HOH 382 3 HOH HOH 382 X HOH 383 3 HOH HOH 383 X HOH 384 3 HOH HOH 384 X HOH 75 3 HOH HOH 385 X HOH 76 3 HOH HOH 386 X HOH 387 3 HOH HOH 387 X HOH 388 3 HOH HOH 388 X HOH 389 3 HOH HOH 389 X HOH 390 3 HOH HOH 390 X HOH 391 3 HOH HOH 391 X HOH 392 3 HOH HOH 392 X HOH 393 3 HOH HOH 393 X HOH 394 3 HOH HOH 394 X HOH 395 3 HOH HOH 395 X HOH 396 3 HOH HOH 396 X HOH 397 3 HOH HOH 397 X HOH 398 3 HOH HOH 398 X HOH 399 3 HOH HOH 399 X HOH 400 3 HOH HOH 400 X HOH 401 3 HOH HOH 401 X HOH 402 3 HOH HOH 402 X HOH 77 3 HOH HOH 403 X HOH 78 3 HOH HOH 404 X HOH 79 3 HOH HOH 405 X HOH 80 3 HOH HOH 406 X HOH 81 3 HOH HOH 407 X HOH 82 3 HOH HOH 408 X HOH 83 3 HOH HOH 409 X HOH 84 3 HOH HOH 410 X HOH 85 3 HOH HOH 411 X HOH 86 3 HOH HOH 412 X HOH 87 3 HOH HOH 413 X HOH 88 3 HOH HOH 414 X HOH 89 3 HOH HOH 415 X HOH 90 3 HOH HOH 416 X HOH 91 3 HOH HOH 417 X HOH 92 3 HOH HOH 418 X HOH 93 3 HOH HOH 419 X HOH 94 3 HOH HOH 420 X HOH 95 3 HOH HOH 421 X HOH 96 3 HOH HOH 422 X HOH 97 3 HOH HOH 423 X HOH 98 3 HOH HOH 424 X HOH 99 3 HOH HOH 425 X HOH 100 3 HOH HOH 426 X HOH 101 3 HOH HOH 427 X HOH 102 3 HOH HOH 428 X HOH 103 3 HOH HOH 429 X HOH 104 3 HOH HOH 430 X HOH 105 3 HOH HOH 431 X HOH 106 3 HOH HOH 432 X HOH 107 3 HOH HOH 433 X HOH 108 3 HOH HOH 434 X HOH 109 3 HOH HOH 435 X HOH 110 3 HOH HOH 436 X HOH 111 3 HOH HOH 437 X HOH 112 3 HOH HOH 438 X HOH 113 3 HOH HOH 439 X HOH 114 3 HOH HOH 440 X HOH 115 3 HOH HOH 441 X HOH 116 3 HOH HOH 442 X HOH 117 3 HOH HOH 443 X HOH 118 3 HOH HOH 444 X HOH 119 3 HOH HOH 445 X HOH 120 3 HOH HOH 446 X HOH 121 3 HOH HOH 447 X HOH 122 3 HOH HOH 448 X HOH 123 3 HOH HOH 449 X HOH 124 3 HOH HOH 450 X HOH 125 3 HOH HOH 451 X HOH 126 3 HOH HOH 452 X HOH 127 3 HOH HOH 453 X HOH 128 3 HOH HOH 454 X HOH 129 3 HOH HOH 455 X HOH 130 3 HOH HOH 456 X HOH 131 3 HOH HOH 457 X HOH 132 3 HOH HOH 458 X HOH 133 3 HOH HOH 459 X HOH 134 3 HOH HOH 460 X HOH 135 3 HOH HOH 461 X HOH 136 3 HOH HOH 462 X HOH 137 3 HOH HOH 463 X HOH 138 3 HOH HOH 464 X HOH 139 3 HOH HOH 465 X HOH 140 3 HOH HOH 466 X HOH 141 3 HOH HOH 467 X HOH 142 3 HOH HOH 468 X HOH 143 3 HOH HOH 469 X HOH 144 3 HOH HOH 470 X HOH 145 3 HOH HOH 471 X HOH 146 3 HOH HOH 472 X HOH 147 3 HOH HOH 473 X HOH 148 3 HOH HOH 474 X HOH 149 3 HOH HOH 475 X HOH 150 3 HOH HOH 476 X HOH 151 3 HOH HOH 477 X HOH 152 3 HOH HOH 478 X HOH 153 3 HOH HOH 479 X HOH 154 3 HOH HOH 480 X HOH 155 3 HOH HOH 481 X HOH 156 3 HOH HOH 482 X HOH 157 3 HOH HOH 483 X HOH 158 3 HOH HOH 484 X HOH 159 3 HOH HOH 485 X HOH 160 3 HOH HOH 486 X HOH 161 3 HOH HOH 487 X HOH 163 3 HOH HOH 488 X HOH 164 3 HOH HOH 489 X HOH 165 3 HOH HOH 490 X HOH 166 3 HOH HOH 491 X HOH 167 3 HOH HOH 492 X HOH 168 3 HOH HOH 493 X HOH 169 3 HOH HOH 494 X HOH 170 3 HOH HOH 495 X HOH 172 3 HOH HOH 496 X HOH 173 3 HOH HOH 497 X HOH 174 3 HOH HOH 498 X HOH 176 3 HOH HOH 499 X HOH 177 3 HOH HOH 500 X HOH 178 3 HOH HOH 501 X HOH 179 3 HOH HOH 502 X HOH 180 3 HOH HOH 503 X HOH 181 3 HOH HOH 504 X HOH 182 3 HOH HOH 505 X HOH 183 3 HOH HOH 506 X HOH 184 3 HOH HOH 507 X HOH 185 3 HOH HOH 508 X HOH 186 3 HOH HOH 509 X HOH 188 3 HOH HOH 510 X HOH 189 3 HOH HOH 511 X HOH 191 3 HOH HOH 512 X HOH 192 3 HOH HOH 513 X HOH 193 3 HOH HOH 514 X HOH 194 3 HOH HOH 515 X HOH 196 3 HOH HOH 516 X HOH 198 3 HOH HOH 517 X HOH 199 3 HOH HOH 518 X HOH 200 3 HOH HOH 519 X HOH 203 3 HOH HOH 520 X HOH 204 3 HOH HOH 521 X HOH 205 3 HOH HOH 522 X HOH 207 3 HOH HOH 523 X HOH 208 3 HOH HOH 524 X HOH 209 3 HOH HOH 525 X HOH 210 3 HOH HOH 526 X HOH 211 3 HOH HOH 527 X HOH 212 3 HOH HOH 528 X HOH 213 3 HOH HOH 529 X n 1 42 X n 2 43 X GLY 44 n 3 GLY 44 X ASN 45 n 4 ASN 45 X PRO 46 n 5 PRO 46 X LEU 47 n 6 LEU 47 X VAL 48 n 7 VAL 48 X TYR 49 n 8 TYR 49 X LEU 50 n 9 LEU 50 X ASP 51 n 10 ASP 51 X VAL 52 n 11 VAL 52 X ASP 53 n 12 ASP 53 X ALA 54 n 13 ALA 54 X ASN 55 n 14 ASN 55 X GLY 56 n 15 GLY 56 X LYS 57 n 16 LYS 57 X PRO 58 n 17 PRO 58 X LEU 59 n 18 LEU 59 X GLY 60 n 19 GLY 60 X ARG 61 n 20 ARG 61 X VAL 62 n 21 VAL 62 X VAL 63 n 22 VAL 63 X LEU 64 n 23 LEU 64 X GLU 65 n 24 GLU 65 X LEU 66 n 25 LEU 66 X LYS 67 n 26 LYS 67 X ALA 68 n 27 ALA 68 X ASP 69 n 28 ASP 69 X VAL 70 n 29 VAL 70 X VAL 71 n 30 VAL 71 X PRO 72 n 31 PRO 72 X LYS 73 n 32 LYS 73 X THR 74 n 33 THR 74 X ALA 75 n 34 ALA 75 X GLU 76 n 35 GLU 76 X ASN 77 n 36 ASN 77 X PHE 78 n 37 PHE 78 X ARG 79 n 38 ARG 79 X ALA 80 n 39 ALA 80 X LEU 81 n 40 LEU 81 X CYS 82 n 41 CYS 82 X THR 83 n 42 THR 83 X GLY 84 n 43 GLY 84 X GLU 85 n 44 GLU 85 X LYS 86 n 45 LYS 86 X GLY 87 n 46 GLY 87 X PHE 88 n 47 PHE 88 X GLY 89 n 48 GLY 89 X TYR 90 n 49 TYR 90 X LYS 91 n 50 LYS 91 X GLY 92 n 51 GLY 92 X SER 93 n 52 SER 93 X THR 94 n 53 THR 94 X PHE 95 n 54 PHE 95 X HIS 96 n 55 HIS 96 X ARG 97 n 56 ARG 97 X VAL 98 n 57 VAL 98 X ILE 99 n 58 ILE 99 X PRO 100 n 59 PRO 100 X SER 101 n 60 SER 101 X PHE 102 n 61 PHE 102 X MET 103 n 62 MET 103 X CYS 104 n 63 CYS 104 X GLN 105 n 64 GLN 105 X ALA 106 n 65 ALA 106 X GLY 107 n 66 GLY 107 X ASP 108 n 67 ASP 108 X PHE 109 n 68 PHE 109 X THR 110 n 69 THR 110 X ASN 111 n 70 ASN 111 X HIS 112 n 71 HIS 112 X ASN 113 n 72 ASN 113 X GLY 114 n 73 GLY 114 X THR 115 n 74 THR 115 X GLY 116 n 75 GLY 116 X GLY 117 n 76 GLY 117 X LYS 118 n 77 LYS 118 X SER 119 n 78 SER 119 X ILE 120 n 79 ILE 120 X TYR 121 n 80 TYR 121 X GLY 122 n 81 GLY 122 X SER 123 n 82 SER 123 X ARG 124 n 83 ARG 124 X PHE 125 n 84 PHE 125 X PRO 126 n 85 PRO 126 X ASP 127 n 86 ASP 127 X GLU 128 n 87 GLU 128 X ASN 129 n 88 ASN 129 X PHE 130 n 89 PHE 130 X THR 131 n 90 THR 131 X LEU 132 n 91 LEU 132 X LYS 133 n 92 LYS 133 X HIS 134 n 93 HIS 134 X VAL 135 n 94 VAL 135 X GLY 136 n 95 GLY 136 X PRO 137 n 96 PRO 137 X GLY 138 n 97 GLY 138 X VAL 139 n 98 VAL 139 X LEU 140 n 99 LEU 140 X SER 141 n 100 SER 141 X MET 142 n 101 MET 142 X ALA 143 n 102 ALA 143 X ASN 144 n 103 ASN 144 X ALA 145 n 104 ALA 145 X GLY 146 n 105 GLY 146 X PRO 147 n 106 PRO 147 X ASN 148 n 107 ASN 148 X THR 149 n 108 THR 149 X ASN 150 n 109 ASN 150 X GLY 151 n 110 GLY 151 X SER 152 n 111 SER 152 X GLN 153 n 112 GLN 153 X PHE 154 n 113 PHE 154 X PHE 155 n 114 PHE 155 X ILE 156 n 115 ILE 156 X CYS 157 n 116 CYS 157 X THR 158 n 117 THR 158 X ILE 159 n 118 ILE 159 X LYS 160 n 119 LYS 160 X THR 161 n 120 THR 161 X ASP 162 n 121 ASP 162 X TRP 163 n 122 TRP 163 X LEU 164 n 123 LEU 164 X ASP 165 n 124 ASP 165 X GLY 166 n 125 GLY 166 X LYS 167 n 126 LYS 167 X HIS 168 n 127 HIS 168 X VAL 169 n 128 VAL 169 X VAL 170 n 129 VAL 170 X PHE 171 n 130 PHE 171 X GLY 172 n 131 GLY 172 X HIS 173 n 132 HIS 173 X VAL 174 n 133 VAL 174 X ILE 175 n 134 ILE 175 X GLU 176 n 135 GLU 176 X GLY 177 n 136 GLY 177 X MET 178 n 137 MET 178 X ASP 179 n 138 ASP 179 X VAL 180 n 139 VAL 180 X VAL 181 n 140 VAL 181 X LYS 182 n 141 LYS 182 X LYS 183 n 142 LYS 183 X ILE 184 n 143 ILE 184 X GLU 185 n 144 GLU 185 X SER 186 n 145 SER 186 X PHE 187 n 146 PHE 187 X GLY 188 n 147 GLY 188 X SER 189 n 148 SER 189 X LYS 190 n 149 LYS 190 X SER 191 n 150 SER 191 X GLY 192 n 151 GLY 192 X ARG 193 n 152 ARG 193 X THR 194 n 153 THR 194 X SER 195 n 154 SER 195 X LYS 196 n 155 LYS 196 X LYS 197 n 156 LYS 197 X ILE 198 n 157 ILE 198 X VAL 199 n 158 VAL 199 X ILE 200 n 159 ILE 200 X THR 201 n 160 THR 201 X ASP 202 n 161 ASP 202 X CYS 203 n 162 CYS 203 X GLY 204 n 163 GLY 204 X GLN 205 n 164 GLN 205 X LEU 206 n 165 LEU 206 X SER 207 n 166 SER 207 X author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 X N ARG 97 A N ARG 56 X O GLN 105 A O GLN 64 X N ALA 106 A N ALA 65 X O PHE 154 A O PHE 113 X O CYS 157 A O CYS 116 X N VAL 139 A N VAL 98 X N LEU 140 A N LEU 99 X O PHE 171 A O PHE 130 X O ILE 175 A O ILE 134 X N VAL 63 A N VAL 22 X O LEU 59 A O LEU 18 X N VAL 52 A N VAL 11 X N ASP 51 A N ASP 10 X O ASP 202 A O ASP 161 1 X HOH 322 I HOH 1 X CD ARG 193 A CD ARG 152 1 Y 1 X NE ARG 193 A NE ARG 152 1 Y 1 X CZ ARG 193 A CZ ARG 152 1 Y 1 X NH1 ARG 193 A NH1 ARG 152 1 Y 1 X NH2 ARG 193 A NH2 ARG 152 1 Y 1 X MET 42 A MET 1 1 Y 1 X SER 43 A SER 2 1 Y 1 X PHE 102 -140.94 -77.13 1 X THR 161 -104.33 63.36 4.944 0.01 0.00 0.00 0.01 0.00 -0.01 0.980 0.968 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.13834 0.11520 0.11636 1.07 25.87 3075 60960 58156 5.0 95.20 0.673 0.015 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.026 0.027 0.80 0.80 1.40 PDB ENTRY 2BIT MAXIMUM LIKELIHOOD MASK 1.07 25.87 351 1635 49 0 1235 0.009 0.002 1.551 0.870 6.323 34.294 11.377 11.248 0.086 0.006 0.001 0.940 0.397 1.366 1.686 2.298 0.748 4.143 1.933 0.258 0.222 1.098 163 3149 20 70.42 1.07 29.0 3RDA 60960 58156 12.7 0.034 1 4.6 95.4 1.07 1.098 3.3 0.159 1 3.1 76.8 data collection DNA model building X-PLOR refinement REFMAC 5.4.0062 data reduction MOSFLM data scaling SCALA phasing X-PLOR Human Cyclophilin D Complexed with a Fragment 1 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 3 N N X VAL 71 A VAL 30 HELX_P X GLY 84 A GLY 43 1 1 14 X THR 161 A THR 120 HELX_P X ASP 165 A ASP 124 5 2 5 X GLY 177 A GLY 136 HELX_P X PHE 187 A PHE 146 1 3 11 ISOMERASE/ISOMERASE INHIBITOR beta barrel, prolyl cis/trans isomerase, mitochondria, inhibitor, ISOMERASE-ISOMERASE INHIBITOR complex PPIF_HUMAN UNP 1 43 P30405 SGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYG SRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGRTSKKIVITD CGQLS 43 207 3RDA 43 207 P30405 X 1 2 166 1 initiating methionine MET 42 3RDA X P30405 UNP 1 1 LYS engineered mutation ILE 175 3RDA X P30405 UNP 175 134 8 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel X PHE 95 A PHE 54 X ILE 99 A ILE 58 X MET 103 A MET 62 X ALA 106 A ALA 65 X PHE 154 A PHE 113 X CYS 157 A CYS 116 X VAL 139 A VAL 98 X MET 142 A MET 101 X VAL 170 A VAL 129 X GLU 176 A GLU 135 X LYS 57 A LYS 16 X LEU 66 A LEU 25 X LEU 47 A LEU 6 X ALA 54 A ALA 13 X ILE 198 A ILE 157 X GLN 205 A GLN 164 BINDING SITE FOR RESIDUE MIO X 1 X MIO 1 Software 9 BINDING SITE FOR RESIDUE MIO X 208 X MIO 208 Software 7 BINDING SITE FOR RESIDUE MIO X 209 X MIO 209 Software 6 BINDING SITE FOR RESIDUE MIO X 210 X MIO 210 Software 6 BINDING SITE FOR RESIDUE MIO X 211 X MIO 211 Software 8 BINDING SITE FOR RESIDUE MIO X 212 X MIO 212 Software 12 BINDING SITE FOR RESIDUE MIO X 213 X MIO 213 Software 7 X ARG 97 A ARG 56 9 1_555 X PHE 102 A PHE 61 9 1_555 X MET 103 A MET 62 9 1_555 X PHE 155 A PHE 114 9 1_555 X MIO 208 C MIO 9 1_555 X HOH 311 I HOH 9 5_555 X HOH 382 I HOH 9 1_555 X HOH 454 I HOH 9 1_555 X HOH 459 I HOH 9 1_555 X MIO 1 B MIO 7 1_555 X ARG 97 A ARG 56 7 1_555 X GLN 105 A GLN 64 7 1_555 X ALA 143 A ALA 102 7 1_555 X ASN 144 A ASN 103 7 1_555 X HIS 168 A HIS 127 7 1_555 X HOH 383 I HOH 7 1_555 X GLY 114 A GLY 73 6 1_555 X ARG 124 A ARG 83 6 1_555 X ASN 144 A ASN 103 6 1_555 X GLN 153 A GLN 112 6 1_555 X HOH 434 I HOH 6 4_454 X HOH 508 I HOH 6 1_555 X ASN 55 A ASN 14 6 5_555 X GLY 56 A GLY 15 6 5_555 X PHE 102 A PHE 61 6 1_555 X TRP 163 A TRP 122 6 1_555 X HOH 319 I HOH 6 1_555 X HOH 352 I HOH 6 1_555 X HOH 20 I HOH 8 1_555 X GLY 44 A GLY 3 8 1_555 X ASN 45 A ASN 4 8 1_555 X ALA 68 A ALA 27 8 1_555 X HOH 253 I HOH 8 7_556 X HOH 354 I HOH 8 1_555 X HOH 355 I HOH 8 1_555 X HOH 356 I HOH 8 1_555 X LEU 81 A LEU 40 12 1_555 X CYS 82 A CYS 41 12 1_555 X THR 83 A THR 42 12 1_555 X GLY 89 A GLY 48 12 1_555 X TYR 90 A TYR 49 12 1_555 X LYS 91 A LYS 50 12 1_555 X CYS 203 A CYS 162 12 1_555 X MIO 213 H MIO 12 1_555 X HOH 238 I HOH 12 1_555 X HOH 271 I HOH 12 3_545 X HOH 377 I HOH 12 1_555 X HOH 379 I HOH 12 1_555 X GLY 84 A GLY 43 7 1_555 X GLY 87 A GLY 46 7 1_555 X PHE 88 A PHE 47 7 1_555 X GLY 89 A GLY 48 7 1_555 X LYS 91 A LYS 50 7 1_555 X MIO 212 G MIO 7 1_555 X HOH 377 I HOH 7 1_555 92 P 41 21 2