0.024525
0.000000
0.000000
0.000000
0.019092
0.000000
0.000000
0.000000
0.011499
0.00000
0.00000
0.00000
Colliandre, L.
Ahmed-Belkacem, H.
Bessin, Y.
Pawlotsky, J.M.
Guichou, J.F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
40.774
52.377
86.965
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C12 H17 N3 O3
251.282
ethyl N-[(4-aminobenzyl)carbamoyl]glycinate
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
C
N
89
N
N
N
90
N
O
N
91
N
C
N
92
N
C
N
93
N
N
N
94
N
O
Y
95
N
C
Y
96
N
C
Y
97
N
C
Y
98
N
C
N
99
N
C
N
100
N
C
N
101
N
N
N
102
N
O
N
103
N
C
Y
104
N
C
Y
105
N
C
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
N
N
132
N
O
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
N
N
144
S
C
N
145
N
C
N
146
N
O
N
147
N
C
N
148
N
C
N
149
N
C
N
150
N
O
N
151
N
O
N
152
N
O
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
N
N
163
N
C
N
164
N
C
N
165
N
O
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
N
N
173
S
C
N
174
N
C
N
175
N
O
N
176
N
C
Y
177
N
C
Y
178
N
N
Y
179
N
C
Y
180
N
C
Y
181
N
N
N
182
N
O
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
O
N
194
N
H
N
195
N
H
N
196
N
N
N
197
S
C
N
198
N
C
N
199
N
O
N
200
S
C
N
201
N
C
N
202
N
C
N
203
N
C
N
204
N
O
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
N
N
219
S
C
N
220
N
C
N
221
N
O
N
222
N
C
N
223
N
C
N
224
N
C
N
225
N
C
N
226
N
O
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
N
N
241
S
C
N
242
N
C
N
243
N
O
N
244
N
C
N
245
N
C
N
246
N
C
N
247
N
C
N
248
N
N
N
249
N
O
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
N
N
266
S
C
N
267
N
C
N
268
N
O
N
269
N
C
N
270
N
C
N
271
N
S
N
272
N
C
N
273
N
O
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
N
N
286
S
C
N
287
N
C
N
288
N
O
N
289
N
C
Y
290
N
C
Y
291
N
C
Y
292
N
C
Y
293
N
C
Y
294
N
C
Y
295
N
C
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
N
N
309
S
C
N
310
N
C
N
311
N
O
N
312
N
C
N
313
N
C
N
314
N
C
N
315
N
O
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
N
N
326
S
C
N
327
N
C
N
328
N
O
N
329
N
C
N
330
N
O
N
331
N
O
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
N
N
340
S
C
N
341
N
C
N
342
N
O
N
343
R
C
N
344
N
O
N
345
N
C
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
N
N
357
S
C
N
358
N
C
N
359
N
O
N
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
N
Y
365
N
C
Y
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
C
N
370
N
O
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
N
N
384
S
C
N
385
N
C
N
386
N
O
N
387
N
C
Y
388
N
C
Y
389
N
C
Y
390
N
C
Y
391
N
C
Y
392
N
C
Y
393
N
C
N
394
N
O
N
395
N
O
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
N
N
408
S
C
N
409
N
C
N
410
N
O
N
411
N
C
N
412
N
C
N
413
N
C
N
414
N
O
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
doub
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
doub
Y
91
N
doub
Y
92
N
sing
Y
93
N
sing
Y
94
N
doub
Y
95
N
sing
Y
96
N
doub
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
doub
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
doub
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
Y
175
N
sing
Y
176
N
doub
Y
177
N
doub
N
178
N
sing
Y
179
N
sing
N
180
N
sing
Y
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
doub
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
doub
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
doub
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
doub
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
doub
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
Y
283
N
doub
Y
284
N
sing
Y
285
N
sing
N
286
N
sing
Y
287
N
doub
N
288
N
sing
Y
289
N
doub
N
290
N
sing
Y
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
doub
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
doub
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
doub
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
doub
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
Y
352
N
doub
Y
353
N
sing
Y
354
N
sing
N
355
N
sing
Y
356
N
doub
Y
357
N
sing
Y
358
N
sing
N
359
N
sing
Y
360
N
sing
Y
361
N
doub
N
362
N
sing
Y
363
N
doub
N
364
N
sing
Y
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
doub
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
Y
380
N
doub
Y
381
N
sing
Y
382
N
sing
N
383
N
sing
Y
384
N
doub
N
385
N
sing
Y
386
N
doub
N
387
N
sing
Y
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
doub
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
UK
Nat Commun
2041-1723
7
12777
12777
10.1038/ncomms12777
27652979
Fragment-based discovery of a new family of non-peptidic small-molecule cyclophilin inhibitors with potent antiviral activities.
2016
10.2210/pdb3rdd/pdb
pdb_00003rdd
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2009-03-18
ADSC QUANTUM 4
yale mirror
SINGLE WAVELENGTH
M
x-ray
1
0.933
1.0
ID14-2
ESRF
0.933
SYNCHROTRON
ESRF BEAMLINE ID14-2
20293.943
Peptidyl-prolyl cis-trans isomerase A
5.2.1.8
1
man
polymer
251.282
ethyl N-[(4-aminobenzyl)carbamoyl]glycinate
1
syn
non-polymer
18.015
water
90
nat
water
Cyclophilin A, PPIase A, Cyclosporin A-binding protein, Rotamase A
no
no
MGHHHHHHSSGRENLYFQGMVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM
CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEA
MERFGSRNGKTSKKITIADCGQLE
MGHHHHHHSSGRENLYFQGMVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM
CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEA
MERFGSRNGKTSKKITIADCGQLE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
PPIA, CYPA
9606
Homo sapiens
562
Escherichia coli
1
2.29
46.24
VAPOR DIFFUSION, HANGING DROP
7.5
100 mM HEPES, 20% PEG10000, 5% ethanol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
291
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2012-03-21
1
1
2016-10-19
1
2
2023-09-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2011-04-01
REL
REL
EA4
ethyl N-[(4-aminobenzyl)carbamoyl]glycinate
HOH
water
2CYH
PDB ENTRY 2CYH
PDB
experimental model
EA4
1
2
EA4
EA4
166
A
HOH
1
3
HOH
HOH
167
A
HOH
4
3
HOH
HOH
168
A
HOH
5
3
HOH
HOH
169
A
HOH
6
3
HOH
HOH
170
A
HOH
7
3
HOH
HOH
171
A
HOH
8
3
HOH
HOH
172
A
HOH
11
3
HOH
HOH
173
A
HOH
12
3
HOH
HOH
174
A
HOH
14
3
HOH
HOH
175
A
HOH
16
3
HOH
HOH
176
A
HOH
17
3
HOH
HOH
177
A
HOH
18
3
HOH
HOH
178
A
HOH
23
3
HOH
HOH
179
A
HOH
24
3
HOH
HOH
180
A
HOH
26
3
HOH
HOH
181
A
HOH
27
3
HOH
HOH
182
A
HOH
29
3
HOH
HOH
183
A
HOH
32
3
HOH
HOH
184
A
HOH
33
3
HOH
HOH
185
A
HOH
35
3
HOH
HOH
186
A
HOH
36
3
HOH
HOH
187
A
HOH
37
3
HOH
HOH
188
A
HOH
44
3
HOH
HOH
189
A
HOH
46
3
HOH
HOH
190
A
HOH
48
3
HOH
HOH
191
A
HOH
50
3
HOH
HOH
192
A
HOH
53
3
HOH
HOH
193
A
HOH
55
3
HOH
HOH
194
A
HOH
57
3
HOH
HOH
195
A
HOH
60
3
HOH
HOH
196
A
HOH
63
3
HOH
HOH
197
A
HOH
64
3
HOH
HOH
198
A
HOH
65
3
HOH
HOH
199
A
HOH
67
3
HOH
HOH
200
A
HOH
68
3
HOH
HOH
201
A
HOH
73
3
HOH
HOH
202
A
HOH
77
3
HOH
HOH
203
A
HOH
78
3
HOH
HOH
204
A
HOH
79
3
HOH
HOH
205
A
HOH
80
3
HOH
HOH
206
A
HOH
82
3
HOH
HOH
207
A
HOH
87
3
HOH
HOH
208
A
HOH
88
3
HOH
HOH
209
A
HOH
90
3
HOH
HOH
210
A
HOH
91
3
HOH
HOH
211
A
HOH
95
3
HOH
HOH
212
A
HOH
96
3
HOH
HOH
213
A
HOH
99
3
HOH
HOH
214
A
HOH
102
3
HOH
HOH
215
A
HOH
103
3
HOH
HOH
216
A
HOH
111
3
HOH
HOH
217
A
HOH
112
3
HOH
HOH
218
A
HOH
113
3
HOH
HOH
219
A
HOH
114
3
HOH
HOH
220
A
HOH
115
3
HOH
HOH
221
A
HOH
117
3
HOH
HOH
222
A
HOH
118
3
HOH
HOH
223
A
HOH
119
3
HOH
HOH
224
A
HOH
120
3
HOH
HOH
225
A
HOH
121
3
HOH
HOH
226
A
HOH
122
3
HOH
HOH
227
A
HOH
125
3
HOH
HOH
228
A
HOH
126
3
HOH
HOH
229
A
HOH
127
3
HOH
HOH
230
A
HOH
129
3
HOH
HOH
231
A
HOH
130
3
HOH
HOH
232
A
HOH
131
3
HOH
HOH
233
A
HOH
132
3
HOH
HOH
234
A
HOH
133
3
HOH
HOH
235
A
HOH
134
3
HOH
HOH
236
A
HOH
135
3
HOH
HOH
237
A
HOH
136
3
HOH
HOH
238
A
HOH
137
3
HOH
HOH
239
A
HOH
138
3
HOH
HOH
240
A
HOH
139
3
HOH
HOH
241
A
HOH
140
3
HOH
HOH
242
A
HOH
141
3
HOH
HOH
243
A
HOH
142
3
HOH
HOH
244
A
HOH
143
3
HOH
HOH
245
A
HOH
144
3
HOH
HOH
246
A
HOH
145
3
HOH
HOH
247
A
HOH
146
3
HOH
HOH
248
A
HOH
147
3
HOH
HOH
249
A
HOH
148
3
HOH
HOH
250
A
HOH
149
3
HOH
HOH
251
A
HOH
150
3
HOH
HOH
252
A
HOH
151
3
HOH
HOH
253
A
HOH
152
3
HOH
HOH
254
A
HOH
153
3
HOH
HOH
255
A
HOH
154
3
HOH
HOH
256
A
n
1
-18
A
n
2
-17
A
n
3
-16
A
n
4
-15
A
n
5
-14
A
n
6
-13
A
n
7
-12
A
n
8
-11
A
n
9
-10
A
n
10
-9
A
n
11
-8
A
n
12
-7
A
n
13
-6
A
n
14
-5
A
n
15
-4
A
n
16
-3
A
n
17
-2
A
n
18
-1
A
n
19
0
A
n
20
1
A
VAL
2
n
21
VAL
2
A
ASN
3
n
22
ASN
3
A
PRO
4
n
23
PRO
4
A
THR
5
n
24
THR
5
A
VAL
6
n
25
VAL
6
A
PHE
7
n
26
PHE
7
A
PHE
8
n
27
PHE
8
A
ASP
9
n
28
ASP
9
A
ILE
10
n
29
ILE
10
A
ALA
11
n
30
ALA
11
A
VAL
12
n
31
VAL
12
A
ASP
13
n
32
ASP
13
A
GLY
14
n
33
GLY
14
A
GLU
15
n
34
GLU
15
A
PRO
16
n
35
PRO
16
A
LEU
17
n
36
LEU
17
A
GLY
18
n
37
GLY
18
A
ARG
19
n
38
ARG
19
A
VAL
20
n
39
VAL
20
A
SER
21
n
40
SER
21
A
PHE
22
n
41
PHE
22
A
GLU
23
n
42
GLU
23
A
LEU
24
n
43
LEU
24
A
PHE
25
n
44
PHE
25
A
ALA
26
n
45
ALA
26
A
ASP
27
n
46
ASP
27
A
LYS
28
n
47
LYS
28
A
VAL
29
n
48
VAL
29
A
PRO
30
n
49
PRO
30
A
LYS
31
n
50
LYS
31
A
THR
32
n
51
THR
32
A
ALA
33
n
52
ALA
33
A
GLU
34
n
53
GLU
34
A
ASN
35
n
54
ASN
35
A
PHE
36
n
55
PHE
36
A
ARG
37
n
56
ARG
37
A
ALA
38
n
57
ALA
38
A
LEU
39
n
58
LEU
39
A
SER
40
n
59
SER
40
A
THR
41
n
60
THR
41
A
GLY
42
n
61
GLY
42
A
GLU
43
n
62
GLU
43
A
LYS
44
n
63
LYS
44
A
GLY
45
n
64
GLY
45
A
PHE
46
n
65
PHE
46
A
GLY
47
n
66
GLY
47
A
TYR
48
n
67
TYR
48
A
LYS
49
n
68
LYS
49
A
GLY
50
n
69
GLY
50
A
SER
51
n
70
SER
51
A
CYS
52
n
71
CYS
52
A
PHE
53
n
72
PHE
53
A
HIS
54
n
73
HIS
54
A
ARG
55
n
74
ARG
55
A
ILE
56
n
75
ILE
56
A
ILE
57
n
76
ILE
57
A
PRO
58
n
77
PRO
58
A
GLY
59
n
78
GLY
59
A
PHE
60
n
79
PHE
60
A
MET
61
n
80
MET
61
A
CYS
62
n
81
CYS
62
A
GLN
63
n
82
GLN
63
A
GLY
64
n
83
GLY
64
A
GLY
65
n
84
GLY
65
A
ASP
66
n
85
ASP
66
A
PHE
67
n
86
PHE
67
A
THR
68
n
87
THR
68
A
ARG
69
n
88
ARG
69
A
HIS
70
n
89
HIS
70
A
ASN
71
n
90
ASN
71
A
GLY
72
n
91
GLY
72
A
THR
73
n
92
THR
73
A
GLY
74
n
93
GLY
74
A
GLY
75
n
94
GLY
75
A
LYS
76
n
95
LYS
76
A
SER
77
n
96
SER
77
A
ILE
78
n
97
ILE
78
A
TYR
79
n
98
TYR
79
A
GLY
80
n
99
GLY
80
A
GLU
81
n
100
GLU
81
A
LYS
82
n
101
LYS
82
A
PHE
83
n
102
PHE
83
A
GLU
84
n
103
GLU
84
A
ASP
85
n
104
ASP
85
A
GLU
86
n
105
GLU
86
A
ASN
87
n
106
ASN
87
A
PHE
88
n
107
PHE
88
A
ILE
89
n
108
ILE
89
A
LEU
90
n
109
LEU
90
A
LYS
91
n
110
LYS
91
A
HIS
92
n
111
HIS
92
A
THR
93
n
112
THR
93
A
GLY
94
n
113
GLY
94
A
PRO
95
n
114
PRO
95
A
GLY
96
n
115
GLY
96
A
ILE
97
n
116
ILE
97
A
LEU
98
n
117
LEU
98
A
SER
99
n
118
SER
99
A
MET
100
n
119
MET
100
A
ALA
101
n
120
ALA
101
A
ASN
102
n
121
ASN
102
A
ALA
103
n
122
ALA
103
A
GLY
104
n
123
GLY
104
A
PRO
105
n
124
PRO
105
A
ASN
106
n
125
ASN
106
A
THR
107
n
126
THR
107
A
ASN
108
n
127
ASN
108
A
GLY
109
n
128
GLY
109
A
SER
110
n
129
SER
110
A
GLN
111
n
130
GLN
111
A
PHE
112
n
131
PHE
112
A
PHE
113
n
132
PHE
113
A
ILE
114
n
133
ILE
114
A
CYS
115
n
134
CYS
115
A
THR
116
n
135
THR
116
A
ALA
117
n
136
ALA
117
A
LYS
118
n
137
LYS
118
A
THR
119
n
138
THR
119
A
GLU
120
n
139
GLU
120
A
TRP
121
n
140
TRP
121
A
LEU
122
n
141
LEU
122
A
ASP
123
n
142
ASP
123
A
GLY
124
n
143
GLY
124
A
LYS
125
n
144
LYS
125
A
HIS
126
n
145
HIS
126
A
VAL
127
n
146
VAL
127
A
VAL
128
n
147
VAL
128
A
PHE
129
n
148
PHE
129
A
GLY
130
n
149
GLY
130
A
LYS
131
n
150
LYS
131
A
VAL
132
n
151
VAL
132
A
LYS
133
n
152
LYS
133
A
GLU
134
n
153
GLU
134
A
GLY
135
n
154
GLY
135
A
MET
136
n
155
MET
136
A
ASN
137
n
156
ASN
137
A
ILE
138
n
157
ILE
138
A
VAL
139
n
158
VAL
139
A
GLU
140
n
159
GLU
140
A
ALA
141
n
160
ALA
141
A
MET
142
n
161
MET
142
A
GLU
143
n
162
GLU
143
A
ARG
144
n
163
ARG
144
A
PHE
145
n
164
PHE
145
A
GLY
146
n
165
GLY
146
A
SER
147
n
166
SER
147
A
ARG
148
n
167
ARG
148
A
ASN
149
n
168
ASN
149
A
GLY
150
n
169
GLY
150
A
LYS
151
n
170
LYS
151
A
THR
152
n
171
THR
152
A
SER
153
n
172
SER
153
A
LYS
154
n
173
LYS
154
A
LYS
155
n
174
LYS
155
A
ILE
156
n
175
ILE
156
A
THR
157
n
176
THR
157
A
ILE
158
n
177
ILE
158
A
ALA
159
n
178
ALA
159
A
ASP
160
n
179
ASP
160
A
CYS
161
n
180
CYS
161
A
GLY
162
n
181
GLY
162
A
GLN
163
n
182
GLN
163
A
LEU
164
n
183
LEU
164
A
GLU
165
n
184
GLU
165
A
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ARG
55
A
N
ARG
74
A
O
GLN
63
A
O
GLN
82
A
N
CYS
62
A
N
CYS
81
A
O
ILE
114
A
O
ILE
133
A
O
CYS
115
A
O
CYS
134
A
N
ILE
97
A
N
ILE
116
A
N
LEU
98
A
N
LEU
117
A
O
GLY
130
A
O
GLY
149
A
O
LYS
133
A
O
LYS
152
A
N
SER
21
A
N
SER
40
A
O
VAL
20
A
O
VAL
39
A
N
PHE
8
A
N
PHE
27
A
N
ASP
9
A
N
ASP
28
A
O
ASP
160
A
O
ASP
179
1
A
CD
LYS
151
A
CD
LYS
170
1
Y
1
A
CE
LYS
151
A
CE
LYS
170
1
Y
1
A
NZ
LYS
151
A
NZ
LYS
170
1
Y
1
A
NZ
LYS
154
A
NZ
LYS
173
1
Y
1
A
CB
GLU
165
A
CB
GLU
184
1
Y
1
A
CG
GLU
165
A
CG
GLU
184
1
Y
1
A
CD
GLU
165
A
CD
GLU
184
1
Y
1
A
OE1
GLU
165
A
OE1
GLU
184
1
Y
1
A
OE2
GLU
165
A
OE2
GLU
184
1
Y
1
A
MET
-18
A
MET
1
1
Y
1
A
GLY
-17
A
GLY
2
1
Y
1
A
HIS
-16
A
HIS
3
1
Y
1
A
HIS
-15
A
HIS
4
1
Y
1
A
HIS
-14
A
HIS
5
1
Y
1
A
HIS
-13
A
HIS
6
1
Y
1
A
HIS
-12
A
HIS
7
1
Y
1
A
HIS
-11
A
HIS
8
1
Y
1
A
SER
-10
A
SER
9
1
Y
1
A
SER
-9
A
SER
10
1
Y
1
A
GLY
-8
A
GLY
11
1
Y
1
A
ARG
-7
A
ARG
12
1
Y
1
A
GLU
-6
A
GLU
13
1
Y
1
A
ASN
-5
A
ASN
14
1
Y
1
A
LEU
-4
A
LEU
15
1
Y
1
A
TYR
-3
A
TYR
16
1
Y
1
A
PHE
-2
A
PHE
17
1
Y
1
A
GLN
-1
A
GLN
18
1
Y
1
A
GLY
0
A
GLY
19
1
Y
1
A
MET
1
A
MET
20
1
Y
1
A
PHE
60
-120.32
-73.39
32.128
1.60
0.00
0.00
1.97
0.00
-3.56
0.954
0.932
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.27165
0.21561
0.21829
2.14
33.46
509
10210
10078
4.8
98.26
7.502
0.187
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.256
0.219
0.80
0.80
1.40
PDB ENTRY 2CYH
MAXIMUM LIKELIHOOD
MASK
2.14
33.46
90
1357
18
0
1249
0.010
0.022
1295
0.001
0.020
902
1.230
1.953
1736
0.830
3.003
2173
6.487
5.000
163
32.730
24.138
58
15.710
15.000
214
10.579
15.000
6
0.077
0.200
177
0.005
0.021
1474
0.001
0.020
279
0.501
1.500
807
0.082
1.500
347
0.949
2.000
1286
1.129
3.000
488
1.825
4.500
450
0.462
0.328
2.195
34
704
20
95.84
2.14
35.0
3RDD
10210
10078
11.3
0.057
1
2.5
98.7
2.14
2.195
1.2
0.494
1
2.6
97.2
data collection
DNA
model building
X-PLOR
refinement
REFMAC
5.4.0062
data reduction
MOSFLM
data scaling
SCALA
phasing
X-PLOR
Human Cyclophilin A Complexed with an Inhibitor
1
N
N
2
N
N
3
N
N
A
VAL
29
A
VAL
48
HELX_P
A
GLY
42
A
GLY
61
1
1
14
A
THR
119
A
THR
138
HELX_P
A
ASP
123
A
ASP
142
5
2
5
A
GLY
135
A
GLY
154
HELX_P
A
ARG
144
A
ARG
163
1
3
10
ISOMERASE/ISOMERASE INHIBITOR
beta barrel, prolyl cis/trans isomerase, cytosolic, inhibitor, ISOMERASE-ISOMERASE INHIBITOR complex
PPIA_HUMAN
UNP
1
1
P62937
MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYG
EKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIAD
CGQLE
1
165
3RDD
1
165
P62937
A
1
20
184
1
expression tag
MET
-18
3RDD
A
P62937
UNP
1
1
expression tag
GLY
-17
3RDD
A
P62937
UNP
2
1
expression tag
HIS
-16
3RDD
A
P62937
UNP
3
1
expression tag
HIS
-15
3RDD
A
P62937
UNP
4
1
expression tag
HIS
-14
3RDD
A
P62937
UNP
5
1
expression tag
HIS
-13
3RDD
A
P62937
UNP
6
1
expression tag
HIS
-12
3RDD
A
P62937
UNP
7
1
expression tag
HIS
-11
3RDD
A
P62937
UNP
8
1
expression tag
SER
-10
3RDD
A
P62937
UNP
9
1
expression tag
SER
-9
3RDD
A
P62937
UNP
10
1
expression tag
GLY
-8
3RDD
A
P62937
UNP
11
1
expression tag
ARG
-7
3RDD
A
P62937
UNP
12
1
expression tag
GLU
-6
3RDD
A
P62937
UNP
13
1
expression tag
ASN
-5
3RDD
A
P62937
UNP
14
1
expression tag
LEU
-4
3RDD
A
P62937
UNP
15
1
expression tag
TYR
-3
3RDD
A
P62937
UNP
16
1
expression tag
PHE
-2
3RDD
A
P62937
UNP
17
1
expression tag
GLN
-1
3RDD
A
P62937
UNP
18
1
expression tag
GLY
0
3RDD
A
P62937
UNP
19
8
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ARG
55
A
ARG
74
A
ILE
57
A
ILE
76
A
MET
61
A
MET
80
A
GLY
64
A
GLY
83
A
PHE
112
A
PHE
131
A
CYS
115
A
CYS
134
A
ILE
97
A
ILE
116
A
MET
100
A
MET
119
A
VAL
128
A
VAL
147
A
GLU
134
A
GLU
153
A
GLU
15
A
GLU
34
A
LEU
24
A
LEU
43
A
THR
5
A
THR
24
A
VAL
12
A
VAL
31
A
ILE
156
A
ILE
175
A
GLU
165
A
GLU
184
BINDING SITE FOR RESIDUE EA4 A 166
A
EA4
166
Software
13
A
ARG
55
A
ARG
74
13
1_555
A
PHE
60
A
PHE
79
13
1_555
A
GLN
63
A
GLN
82
13
1_555
A
GLY
72
A
GLY
91
13
1_555
A
ALA
101
A
ALA
120
13
1_555
A
ASN
102
A
ASN
121
13
1_555
A
THR
107
A
THR
126
13
1_555
A
GLY
109
A
GLY
128
13
1_555
A
GLN
111
A
GLN
130
13
1_555
A
PHE
113
A
PHE
132
13
1_555
A
HIS
126
A
HIS
145
13
1_555
A
HOH
170
C
HOH
13
1_555
A
HOH
194
C
HOH
13
1_555
19
P 21 21 21