0.016220
0.000000
0.001650
0.000000
0.011813
0.000000
0.000000
0.000000
0.007896
0.00000
0.00000
0.00000
Erkens, G.B.
Berntsson, R.P.-A.
Fulyani, F.
Majsnerowska, M.
Vujicic-Zagar, A.
ter Beek, J.
Poolman, B.
Slotboom, D.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
95.81
90.00
61.654
84.654
127.301
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C15 H30 O6
306.395
n
nonyl beta-D-glucopyranoside
Beta-NONYLGLUCOSIDE; nonyl beta-D-glucoside; nonyl D-glucoside; nonyl glucoside
D-saccharide
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
C12 H17 N4 O S 1
265.355
3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2-HYDROXY-ETHYL)-4-METHYL-THIAZOL-3-IUM
THIAMIN; VITAMIN B1
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
R
C
N
59
R
C
N
60
S
C
N
61
S
C
N
62
R
C
N
63
N
C
N
64
N
C
N
65
N
C
N
66
N
C
N
67
N
C
N
68
N
C
N
69
N
C
N
70
N
C
N
71
N
C
N
72
N
C
N
73
N
O
N
74
N
O
N
75
N
O
N
76
N
O
N
77
N
O
N
78
N
O
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
N
N
110
R
C
N
111
N
C
N
112
N
O
N
113
N
C
N
114
N
S
N
115
N
O
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
N
N
132
N
O
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
N
N
144
S
C
N
145
N
C
N
146
N
O
N
147
N
C
N
148
N
C
N
149
N
C
N
150
N
O
N
151
N
O
N
152
N
O
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
N
N
163
N
C
N
164
N
C
N
165
N
O
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
N
N
173
S
C
N
174
N
C
N
175
N
O
N
176
N
C
Y
177
N
C
Y
178
N
N
Y
179
N
C
Y
180
N
C
Y
181
N
N
N
182
N
O
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
O
N
194
N
H
N
195
N
H
N
196
N
N
N
197
S
C
N
198
N
C
N
199
N
O
N
200
S
C
N
201
N
C
N
202
N
C
N
203
N
C
N
204
N
O
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
N
N
219
S
C
N
220
N
C
N
221
N
O
N
222
N
C
N
223
N
C
N
224
N
C
N
225
N
C
N
226
N
O
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
N
N
241
S
C
N
242
N
C
N
243
N
O
N
244
N
C
N
245
N
C
N
246
N
C
N
247
N
C
N
248
N
N
N
249
N
O
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
N
N
266
S
C
N
267
N
C
N
268
N
O
N
269
N
C
N
270
N
C
N
271
N
S
N
272
N
C
N
273
N
O
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
N
N
286
S
C
N
287
N
C
N
288
N
O
N
289
N
C
Y
290
N
C
Y
291
N
C
Y
292
N
C
Y
293
N
C
Y
294
N
C
Y
295
N
C
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
N
N
309
S
C
N
310
N
C
N
311
N
O
N
312
N
C
N
313
N
C
N
314
N
C
N
315
N
O
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
N
N
326
S
C
N
327
N
C
N
328
N
O
N
329
N
C
N
330
N
O
N
331
N
O
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
N
N
340
S
C
N
341
N
C
N
342
N
O
N
343
R
C
N
344
N
O
N
345
N
C
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
N
N
357
S
C
N
358
N
C
N
359
N
O
N
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
N
Y
365
N
C
Y
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
C
N
370
N
O
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
N
N
384
S
C
N
385
N
C
N
386
N
O
N
387
N
C
Y
388
N
C
Y
389
N
C
Y
390
N
C
Y
391
N
C
Y
392
N
C
Y
393
N
C
N
394
N
O
N
395
N
O
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
N
N
408
S
C
N
409
N
C
N
410
N
O
N
411
N
C
N
412
N
C
N
413
N
C
N
414
N
O
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
C
N
427
N
N
N
428
N
C
N
429
N
O
N
430
N
C
N
431
N
C
Y
432
N
C
Y
433
N
S
Y
434
N
C
Y
435
N
C
Y
436
N
N
N
437
N
C
Y
438
N
C
Y
439
N
N
Y
440
N
C
Y
441
N
N
Y
442
N
C
Y
443
N
C
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
doub
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
doub
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
doub
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
Y
176
N
sing
Y
177
N
doub
Y
178
N
doub
N
179
N
sing
Y
180
N
sing
N
181
N
sing
Y
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
doub
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
doub
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
doub
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
doub
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
Y
284
N
doub
Y
285
N
sing
Y
286
N
sing
N
287
N
sing
Y
288
N
doub
N
289
N
sing
Y
290
N
doub
N
291
N
sing
Y
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
doub
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
doub
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
doub
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
doub
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
Y
353
N
doub
Y
354
N
sing
Y
355
N
sing
N
356
N
sing
Y
357
N
doub
Y
358
N
sing
Y
359
N
sing
N
360
N
sing
Y
361
N
sing
Y
362
N
doub
N
363
N
sing
Y
364
N
doub
N
365
N
sing
Y
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
doub
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
Y
381
N
doub
Y
382
N
sing
Y
383
N
sing
N
384
N
sing
Y
385
N
doub
N
386
N
sing
Y
387
N
doub
N
388
N
sing
Y
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
doub
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
Y
431
N
sing
Y
432
N
doub
N
433
N
sing
Y
434
N
sing
Y
435
N
doub
Y
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
Y
441
N
sing
Y
442
N
doub
Y
443
N
doub
Y
444
N
sing
Y
445
N
doub
Y
446
N
sing
N
447
N
sing
US
Nat.Struct.Mol.Biol.
1545-9993
18
755
760
10.1038/nsmb.2073
21706007
The structural basis of modularity in ECF-type ABC transporters.
2011
10.2210/pdb3rlb/pdb
pdb_00003rlb
BNG A 187 HAS WRONG CHIRALITY AT ATOM C1
BNG A 187 HAS WRONG CHIRALITY AT ATOM C2
BNG A 187 HAS WRONG CHIRALITY AT ATOM C3
BNG A 187 HAS WRONG CHIRALITY AT ATOM C4
BNG A 187 HAS WRONG CHIRALITY AT ATOM C5
100
1
CCD
2010-09-13
ADSC QUANTUM 315r
MAD
M
x-ray
1
1.07225
1.0
0.9758
1.0
0.9793
1.0
0.9791
1.0
146525
0.041
2.140
48470
65.10
ID23-1
ESRF
1.07225
0.9758, 0.9793, 0.9791
SYNCHROTRON
ESRF BEAMLINE ID23-1
21231.480
ThiT
2
man
polymer
306.395
nonyl beta-D-glucopyranoside
11
man
non-polymer
265.355
3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2-HYDROXY-ETHYL)-4-METHYL-THIAZOL-3-IUM
2
syn
non-polymer
18.015
water
72
nat
water
no
no
MHHHHHHHHAMSNSKFNVRLLTEIAFMAALAFIISLIPNTVYGWIIVEIACIPILLLSLRRGLTAGLVGGLIWGILSMIT
GHAYILSLSQAFLEYLVAPVSLGIAGLFRQKTAPLKLAPVLLGTFVAVLLKYFFHFIAGIIFWSQYAWKGWGAVAYSLAV
NGISGILTAIAAFVILIIFVKKFPKLFIHSNY
MHHHHHHHHAMSNSKFNVRLLTEIAFMAALAFIISLIPNTVYGWIIVEIACIPILLLSLRRGLTAGLVGGLIWGILSMIT
GHAYILSLSQAFLEYLVAPVSLGIAGLFRQKTAPLKLAPVLLGTFVAVLLKYFFHFIAGIIFWSQYAWKGWGAVAYSLAV
NGISGILTAIAAFVILIIFVKKFPKLFIHSNY
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
NZ9000
sample
LLNZ_01755
746361
Lactococcus lactis subsp. cremoris
746361
Lactococcus lactis subsp. cremoris
NZ9000
1
3.89
68.39
VAPOR DIFFUSION, HANGING DROP
6.0
17% PEG3350, 0.2 M ammonium nitrate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 279K
279
chem_comp
database_PDB_caveat
entity
pdbx_chem_comp_identifier
pdbx_entity_nonpoly
struct_ref_seq_dif
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
struct_ncs_dom_lim
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Database references
Advisory
Data collection
Database references
Derived calculations
Structure summary
Data collection
Database references
Refinement description
Structure summary
1
0
2011-06-29
1
1
2011-07-13
1
2
2011-07-20
1
3
2020-07-29
1
4
2024-02-28
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.type
_entity.pdbx_description
_pdbx_entity_nonpoly.name
_struct_ref_seq_dif.details
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ncs_dom_lim.beg_auth_comp_id
_struct_ncs_dom_lim.beg_label_asym_id
_struct_ncs_dom_lim.beg_label_comp_id
_struct_ncs_dom_lim.beg_label_seq_id
_struct_ncs_dom_lim.end_auth_comp_id
_struct_ncs_dom_lim.end_label_asym_id
_struct_ncs_dom_lim.end_label_comp_id
_struct_ncs_dom_lim.end_label_seq_id
b-nonylglucoside
RCSB
Y
RCSB
2011-04-19
REL
REL
0.030
2798
99.00
0.034
5015
98.80
0.036
6435
98.50
0.047
7630
98.80
0.065
8717
99.60
0.087
7953
82.10
0.136
5664
54.10
0.214
3282
29.00
0.439
976
8.10
BNG
nonyl beta-D-glucopyranoside
VIB
3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2-HYDROXY-ETHYL)-4-METHYL-THIAZOL-3-IUM
HOH
water
BNG
183
2
BNG
BNG
183
A
BNG
184
2
BNG
BNG
184
A
BNG
185
2
BNG
BNG
185
A
BNG
186
2
BNG
BNG
186
A
BNG
187
2
BNG
BNG
187
A
BNG
188
2
BNG
BNG
188
A
BNG
189
2
BNG
BNG
189
A
VIB
191
3
VIB
VIB
191
A
BNG
183
2
BNG
BNG
183
B
BNG
184
2
BNG
BNG
184
B
BNG
185
2
BNG
BNG
185
B
BNG
186
2
BNG
BNG
186
B
VIB
187
3
VIB
VIB
187
B
HOH
192
4
HOH
HOH
192
A
HOH
193
4
HOH
HOH
193
A
HOH
194
4
HOH
HOH
194
A
HOH
195
4
HOH
HOH
195
A
HOH
196
4
HOH
HOH
196
A
HOH
197
4
HOH
HOH
197
A
HOH
198
4
HOH
HOH
198
A
HOH
199
4
HOH
HOH
199
A
HOH
200
4
HOH
HOH
200
A
HOH
201
4
HOH
HOH
201
A
HOH
202
4
HOH
HOH
202
A
HOH
203
4
HOH
HOH
203
A
HOH
204
4
HOH
HOH
204
A
HOH
205
4
HOH
HOH
205
A
HOH
206
4
HOH
HOH
206
A
HOH
207
4
HOH
HOH
207
A
HOH
208
4
HOH
HOH
208
A
HOH
209
4
HOH
HOH
209
A
HOH
210
4
HOH
HOH
210
A
HOH
211
4
HOH
HOH
211
A
HOH
212
4
HOH
HOH
212
A
HOH
213
4
HOH
HOH
213
A
HOH
214
4
HOH
HOH
214
A
HOH
215
4
HOH
HOH
215
A
HOH
216
4
HOH
HOH
216
A
HOH
217
4
HOH
HOH
217
A
HOH
218
4
HOH
HOH
218
A
HOH
219
4
HOH
HOH
219
A
HOH
220
4
HOH
HOH
220
A
HOH
221
4
HOH
HOH
221
A
HOH
222
4
HOH
HOH
222
A
HOH
223
4
HOH
HOH
223
A
HOH
224
4
HOH
HOH
224
A
HOH
225
4
HOH
HOH
225
A
HOH
226
4
HOH
HOH
226
A
HOH
227
4
HOH
HOH
227
A
HOH
228
4
HOH
HOH
228
A
HOH
188
4
HOH
HOH
188
B
HOH
189
4
HOH
HOH
189
B
HOH
190
4
HOH
HOH
190
B
HOH
191
4
HOH
HOH
191
B
HOH
192
4
HOH
HOH
192
B
HOH
193
4
HOH
HOH
193
B
HOH
194
4
HOH
HOH
194
B
HOH
195
4
HOH
HOH
195
B
HOH
196
4
HOH
HOH
196
B
HOH
197
4
HOH
HOH
197
B
HOH
198
4
HOH
HOH
198
B
HOH
199
4
HOH
HOH
199
B
HOH
200
4
HOH
HOH
200
B
HOH
201
4
HOH
HOH
201
B
HOH
202
4
HOH
HOH
202
B
HOH
203
4
HOH
HOH
203
B
HOH
204
4
HOH
HOH
204
B
HOH
205
4
HOH
HOH
205
B
HOH
206
4
HOH
HOH
206
B
HOH
207
4
HOH
HOH
207
B
HOH
208
4
HOH
HOH
208
B
HOH
209
4
HOH
HOH
209
B
HOH
211
4
HOH
HOH
211
B
HOH
212
4
HOH
HOH
212
B
HOH
213
4
HOH
HOH
213
B
HOH
214
4
HOH
HOH
214
B
HOH
215
4
HOH
HOH
215
B
HOH
216
4
HOH
HOH
216
B
HOH
217
4
HOH
HOH
217
B
HOH
218
4
HOH
HOH
218
B
HOH
219
4
HOH
HOH
219
B
HOH
220
4
HOH
HOH
220
B
HOH
221
4
HOH
HOH
221
B
HOH
222
4
HOH
HOH
222
B
HOH
223
4
HOH
HOH
223
B
0.710
0.720
0.680
15288
14532
756
0.930
0.940
0.860
688
601
87
0.840
0.850
0.820
2052
1901
151
0.860
0.870
0.770
2561
2435
126
0.800
0.800
0.740
2566
2452
114
0.650
0.650
0.540
4562
4379
183
0.460
0.470
0.370
2859
2764
95
n
1
-9
A
n
2
-8
A
n
3
-7
A
n
4
-6
A
n
5
-5
A
n
6
-4
A
n
7
-3
A
n
8
-2
A
n
9
-1
A
n
10
0
A
n
11
1
A
n
12
2
A
n
13
3
A
n
14
4
A
n
15
5
A
n
16
6
A
ASN
7
n
17
ASN
7
A
VAL
8
n
18
VAL
8
A
ARG
9
n
19
ARG
9
A
LEU
10
n
20
LEU
10
A
LEU
11
n
21
LEU
11
A
THR
12
n
22
THR
12
A
GLU
13
n
23
GLU
13
A
ILE
14
n
24
ILE
14
A
ALA
15
n
25
ALA
15
A
PHE
16
n
26
PHE
16
A
MET
17
n
27
MET
17
A
ALA
18
n
28
ALA
18
A
ALA
19
n
29
ALA
19
A
LEU
20
n
30
LEU
20
A
ALA
21
n
31
ALA
21
A
PHE
22
n
32
PHE
22
A
ILE
23
n
33
ILE
23
A
ILE
24
n
34
ILE
24
A
SER
25
n
35
SER
25
A
LEU
26
n
36
LEU
26
A
ILE
27
n
37
ILE
27
A
PRO
28
n
38
PRO
28
A
ASN
29
n
39
ASN
29
A
THR
30
n
40
THR
30
A
VAL
31
n
41
VAL
31
A
TYR
32
n
42
TYR
32
A
GLY
33
n
43
GLY
33
A
TRP
34
n
44
TRP
34
A
ILE
35
n
45
ILE
35
A
ILE
36
n
46
ILE
36
A
VAL
37
n
47
VAL
37
A
GLU
38
n
48
GLU
38
A
ILE
39
n
49
ILE
39
A
ALA
40
n
50
ALA
40
A
CYS
41
n
51
CYS
41
A
ILE
42
n
52
ILE
42
A
PRO
43
n
53
PRO
43
A
ILE
44
n
54
ILE
44
A
LEU
45
n
55
LEU
45
A
LEU
46
n
56
LEU
46
A
LEU
47
n
57
LEU
47
A
SER
48
n
58
SER
48
A
LEU
49
n
59
LEU
49
A
ARG
50
n
60
ARG
50
A
ARG
51
n
61
ARG
51
A
GLY
52
n
62
GLY
52
A
LEU
53
n
63
LEU
53
A
THR
54
n
64
THR
54
A
ALA
55
n
65
ALA
55
A
GLY
56
n
66
GLY
56
A
LEU
57
n
67
LEU
57
A
VAL
58
n
68
VAL
58
A
GLY
59
n
69
GLY
59
A
GLY
60
n
70
GLY
60
A
LEU
61
n
71
LEU
61
A
ILE
62
n
72
ILE
62
A
TRP
63
n
73
TRP
63
A
GLY
64
n
74
GLY
64
A
ILE
65
n
75
ILE
65
A
LEU
66
n
76
LEU
66
A
SER
67
n
77
SER
67
A
MET
68
n
78
MET
68
A
ILE
69
n
79
ILE
69
A
THR
70
n
80
THR
70
A
GLY
71
n
81
GLY
71
A
HIS
72
n
82
HIS
72
A
ALA
73
n
83
ALA
73
A
TYR
74
n
84
TYR
74
A
ILE
75
n
85
ILE
75
A
LEU
76
n
86
LEU
76
A
SER
77
n
87
SER
77
A
LEU
78
n
88
LEU
78
A
SER
79
n
89
SER
79
A
GLN
80
n
90
GLN
80
A
ALA
81
n
91
ALA
81
A
PHE
82
n
92
PHE
82
A
LEU
83
n
93
LEU
83
A
GLU
84
n
94
GLU
84
A
TYR
85
n
95
TYR
85
A
LEU
86
n
96
LEU
86
A
VAL
87
n
97
VAL
87
A
ALA
88
n
98
ALA
88
A
PRO
89
n
99
PRO
89
A
VAL
90
n
100
VAL
90
A
SER
91
n
101
SER
91
A
LEU
92
n
102
LEU
92
A
GLY
93
n
103
GLY
93
A
ILE
94
n
104
ILE
94
A
ALA
95
n
105
ALA
95
A
GLY
96
n
106
GLY
96
A
LEU
97
n
107
LEU
97
A
PHE
98
n
108
PHE
98
A
ARG
99
n
109
ARG
99
A
GLN
100
n
110
GLN
100
A
LYS
101
n
111
LYS
101
A
THR
102
n
112
THR
102
A
ALA
103
n
113
ALA
103
A
PRO
104
n
114
PRO
104
A
LEU
105
n
115
LEU
105
A
LYS
106
n
116
LYS
106
A
LEU
107
n
117
LEU
107
A
ALA
108
n
118
ALA
108
A
PRO
109
n
119
PRO
109
A
VAL
110
n
120
VAL
110
A
LEU
111
n
121
LEU
111
A
LEU
112
n
122
LEU
112
A
GLY
113
n
123
GLY
113
A
THR
114
n
124
THR
114
A
PHE
115
n
125
PHE
115
A
VAL
116
n
126
VAL
116
A
ALA
117
n
127
ALA
117
A
VAL
118
n
128
VAL
118
A
LEU
119
n
129
LEU
119
A
LEU
120
n
130
LEU
120
A
LYS
121
n
131
LYS
121
A
TYR
122
n
132
TYR
122
A
PHE
123
n
133
PHE
123
A
PHE
124
n
134
PHE
124
A
HIS
125
n
135
HIS
125
A
PHE
126
n
136
PHE
126
A
ILE
127
n
137
ILE
127
A
ALA
128
n
138
ALA
128
A
GLY
129
n
139
GLY
129
A
ILE
130
n
140
ILE
130
A
ILE
131
n
141
ILE
131
A
PHE
132
n
142
PHE
132
A
TRP
133
n
143
TRP
133
A
SER
134
n
144
SER
134
A
GLN
135
n
145
GLN
135
A
TYR
136
n
146
TYR
136
A
ALA
137
n
147
ALA
137
A
TRP
138
n
148
TRP
138
A
LYS
139
n
149
LYS
139
A
GLY
140
n
150
GLY
140
A
TRP
141
n
151
TRP
141
A
GLY
142
n
152
GLY
142
A
ALA
143
n
153
ALA
143
A
VAL
144
n
154
VAL
144
A
ALA
145
n
155
ALA
145
A
TYR
146
n
156
TYR
146
A
SER
147
n
157
SER
147
A
LEU
148
n
158
LEU
148
A
ALA
149
n
159
ALA
149
A
VAL
150
n
160
VAL
150
A
ASN
151
n
161
ASN
151
A
GLY
152
n
162
GLY
152
A
ILE
153
n
163
ILE
153
A
SER
154
n
164
SER
154
A
GLY
155
n
165
GLY
155
A
ILE
156
n
166
ILE
156
A
LEU
157
n
167
LEU
157
A
THR
158
n
168
THR
158
A
ALA
159
n
169
ALA
159
A
ILE
160
n
170
ILE
160
A
ALA
161
n
171
ALA
161
A
ALA
162
n
172
ALA
162
A
PHE
163
n
173
PHE
163
A
VAL
164
n
174
VAL
164
A
ILE
165
n
175
ILE
165
A
LEU
166
n
176
LEU
166
A
ILE
167
n
177
ILE
167
A
ILE
168
n
178
ILE
168
A
PHE
169
n
179
PHE
169
A
VAL
170
n
180
VAL
170
A
LYS
171
n
181
LYS
171
A
LYS
172
n
182
LYS
172
A
PHE
173
n
183
PHE
173
A
PRO
174
n
184
PRO
174
A
LYS
175
n
185
LYS
175
A
LEU
176
n
186
LEU
176
A
PHE
177
n
187
PHE
177
A
ILE
178
n
188
ILE
178
A
HIS
179
n
189
HIS
179
A
SER
180
n
190
SER
180
A
ASN
181
n
191
ASN
181
A
TYR
182
n
192
TYR
182
A
n
1
-9
B
n
2
-8
B
n
3
-7
B
n
4
-6
B
n
5
-5
B
n
6
-4
B
n
7
-3
B
n
8
-2
B
n
9
-1
B
n
10
0
B
n
11
1
B
n
12
2
B
n
13
3
B
n
14
4
B
n
15
5
B
PHE
6
n
16
PHE
6
B
ASN
7
n
17
ASN
7
B
VAL
8
n
18
VAL
8
B
ARG
9
n
19
ARG
9
B
LEU
10
n
20
LEU
10
B
LEU
11
n
21
LEU
11
B
THR
12
n
22
THR
12
B
GLU
13
n
23
GLU
13
B
ILE
14
n
24
ILE
14
B
ALA
15
n
25
ALA
15
B
PHE
16
n
26
PHE
16
B
MET
17
n
27
MET
17
B
ALA
18
n
28
ALA
18
B
ALA
19
n
29
ALA
19
B
LEU
20
n
30
LEU
20
B
ALA
21
n
31
ALA
21
B
PHE
22
n
32
PHE
22
B
ILE
23
n
33
ILE
23
B
ILE
24
n
34
ILE
24
B
SER
25
n
35
SER
25
B
LEU
26
n
36
LEU
26
B
ILE
27
n
37
ILE
27
B
PRO
28
n
38
PRO
28
B
ASN
29
n
39
ASN
29
B
THR
30
n
40
THR
30
B
VAL
31
n
41
VAL
31
B
TYR
32
n
42
TYR
32
B
GLY
33
n
43
GLY
33
B
TRP
34
n
44
TRP
34
B
ILE
35
n
45
ILE
35
B
ILE
36
n
46
ILE
36
B
VAL
37
n
47
VAL
37
B
GLU
38
n
48
GLU
38
B
ILE
39
n
49
ILE
39
B
ALA
40
n
50
ALA
40
B
CYS
41
n
51
CYS
41
B
ILE
42
n
52
ILE
42
B
PRO
43
n
53
PRO
43
B
ILE
44
n
54
ILE
44
B
LEU
45
n
55
LEU
45
B
LEU
46
n
56
LEU
46
B
LEU
47
n
57
LEU
47
B
SER
48
n
58
SER
48
B
LEU
49
n
59
LEU
49
B
ARG
50
n
60
ARG
50
B
ARG
51
n
61
ARG
51
B
GLY
52
n
62
GLY
52
B
LEU
53
n
63
LEU
53
B
THR
54
n
64
THR
54
B
ALA
55
n
65
ALA
55
B
GLY
56
n
66
GLY
56
B
LEU
57
n
67
LEU
57
B
VAL
58
n
68
VAL
58
B
GLY
59
n
69
GLY
59
B
GLY
60
n
70
GLY
60
B
LEU
61
n
71
LEU
61
B
ILE
62
n
72
ILE
62
B
TRP
63
n
73
TRP
63
B
GLY
64
n
74
GLY
64
B
ILE
65
n
75
ILE
65
B
LEU
66
n
76
LEU
66
B
SER
67
n
77
SER
67
B
MET
68
n
78
MET
68
B
ILE
69
n
79
ILE
69
B
THR
70
n
80
THR
70
B
GLY
71
n
81
GLY
71
B
HIS
72
n
82
HIS
72
B
ALA
73
n
83
ALA
73
B
TYR
74
n
84
TYR
74
B
ILE
75
n
85
ILE
75
B
LEU
76
n
86
LEU
76
B
SER
77
n
87
SER
77
B
LEU
78
n
88
LEU
78
B
SER
79
n
89
SER
79
B
GLN
80
n
90
GLN
80
B
ALA
81
n
91
ALA
81
B
PHE
82
n
92
PHE
82
B
LEU
83
n
93
LEU
83
B
GLU
84
n
94
GLU
84
B
TYR
85
n
95
TYR
85
B
LEU
86
n
96
LEU
86
B
VAL
87
n
97
VAL
87
B
ALA
88
n
98
ALA
88
B
PRO
89
n
99
PRO
89
B
VAL
90
n
100
VAL
90
B
SER
91
n
101
SER
91
B
LEU
92
n
102
LEU
92
B
GLY
93
n
103
GLY
93
B
ILE
94
n
104
ILE
94
B
ALA
95
n
105
ALA
95
B
GLY
96
n
106
GLY
96
B
LEU
97
n
107
LEU
97
B
PHE
98
n
108
PHE
98
B
ARG
99
n
109
ARG
99
B
GLN
100
n
110
GLN
100
B
LYS
101
n
111
LYS
101
B
THR
102
n
112
THR
102
B
ALA
103
n
113
ALA
103
B
PRO
104
n
114
PRO
104
B
LEU
105
n
115
LEU
105
B
LYS
106
n
116
LYS
106
B
LEU
107
n
117
LEU
107
B
ALA
108
n
118
ALA
108
B
PRO
109
n
119
PRO
109
B
VAL
110
n
120
VAL
110
B
LEU
111
n
121
LEU
111
B
LEU
112
n
122
LEU
112
B
GLY
113
n
123
GLY
113
B
THR
114
n
124
THR
114
B
PHE
115
n
125
PHE
115
B
VAL
116
n
126
VAL
116
B
ALA
117
n
127
ALA
117
B
VAL
118
n
128
VAL
118
B
LEU
119
n
129
LEU
119
B
LEU
120
n
130
LEU
120
B
LYS
121
n
131
LYS
121
B
TYR
122
n
132
TYR
122
B
PHE
123
n
133
PHE
123
B
PHE
124
n
134
PHE
124
B
HIS
125
n
135
HIS
125
B
PHE
126
n
136
PHE
126
B
ILE
127
n
137
ILE
127
B
ALA
128
n
138
ALA
128
B
GLY
129
n
139
GLY
129
B
ILE
130
n
140
ILE
130
B
ILE
131
n
141
ILE
131
B
PHE
132
n
142
PHE
132
B
TRP
133
n
143
TRP
133
B
SER
134
n
144
SER
134
B
GLN
135
n
145
GLN
135
B
TYR
136
n
146
TYR
136
B
ALA
137
n
147
ALA
137
B
TRP
138
n
148
TRP
138
B
LYS
139
n
149
LYS
139
B
GLY
140
n
150
GLY
140
B
TRP
141
n
151
TRP
141
B
GLY
142
n
152
GLY
142
B
ALA
143
n
153
ALA
143
B
VAL
144
n
154
VAL
144
B
ALA
145
n
155
ALA
145
B
TYR
146
n
156
TYR
146
B
SER
147
n
157
SER
147
B
LEU
148
n
158
LEU
148
B
ALA
149
n
159
ALA
149
B
VAL
150
n
160
VAL
150
B
ASN
151
n
161
ASN
151
B
GLY
152
n
162
GLY
152
B
ILE
153
n
163
ILE
153
B
SER
154
n
164
SER
154
B
GLY
155
n
165
GLY
155
B
ILE
156
n
166
ILE
156
B
LEU
157
n
167
LEU
157
B
THR
158
n
168
THR
158
B
ALA
159
n
169
ALA
159
B
ILE
160
n
170
ILE
160
B
ALA
161
n
171
ALA
161
B
ALA
162
n
172
ALA
162
B
PHE
163
n
173
PHE
163
B
VAL
164
n
174
VAL
164
B
ILE
165
n
175
ILE
165
B
LEU
166
n
176
LEU
166
B
ILE
167
n
177
ILE
167
B
ILE
168
n
178
ILE
168
B
PHE
169
n
179
PHE
169
B
VAL
170
n
180
VAL
170
B
LYS
171
n
181
LYS
171
B
LYS
172
n
182
LYS
172
B
PHE
173
n
183
PHE
173
B
PRO
174
n
184
PRO
174
B
LYS
175
n
185
LYS
175
B
LEU
176
n
186
LEU
176
B
PHE
177
n
187
PHE
177
B
ILE
178
n
188
ILE
178
B
HIS
179
n
189
HIS
179
B
SER
180
n
190
SER
180
B
ASN
181
n
191
ASN
181
B
TYR
182
n
192
TYR
182
B
1.1666
-0.1374
-0.3581
1.4109
0.9127
3.3596
-0.1034
-0.0146
0.0385
-0.0095
0.0941
0.0502
-0.0975
-0.1280
0.0092
0.0172
0.0039
-0.0212
0.0736
0.0157
0.1134
refined
30.0355
-14.4828
32.1430
X-RAY DIFFRACTION
A
7
A
182
X-RAY DIFFRACTION
1
B
6
B
182
X-RAY DIFFRACTION
1
A
192
A
228
X-RAY DIFFRACTION
1
B
188
B
223
X-RAY DIFFRACTION
1
A
183
A
189
X-RAY DIFFRACTION
1
B
183
B
186
X-RAY DIFFRACTION
1
A
191
A
191
X-RAY DIFFRACTION
1
B
187
B
187
X-RAY DIFFRACTION
1
author_defined_assembly
1
monomeric
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
31
A
N
VAL
41
A
O
ILE
35
A
O
ILE
45
B
N
VAL
31
B
N
VAL
41
B
O
ILE
35
B
O
ILE
45
1
A
C1
BNG
183
C
C1
BNG
1
1
N
1
A
C2
BNG
183
C
C2
BNG
1
1
N
1
A
C3
BNG
183
C
C3
BNG
1
1
N
1
A
C4
BNG
183
C
C4
BNG
1
1
N
1
A
C5
BNG
183
C
C5
BNG
1
1
N
1
A
C6
BNG
183
C
C6
BNG
1
1
N
1
A
O2
BNG
183
C
O2
BNG
1
1
N
1
A
O3
BNG
183
C
O3
BNG
1
1
N
1
A
O4
BNG
183
C
O4
BNG
1
1
N
1
A
O5
BNG
183
C
O5
BNG
1
1
N
1
A
O6
BNG
183
C
O6
BNG
1
1
N
1
A
C1
BNG
184
D
C1
BNG
1
1
N
1
A
C2
BNG
184
D
C2
BNG
1
1
N
1
A
C3
BNG
184
D
C3
BNG
1
1
N
1
A
C4
BNG
184
D
C4
BNG
1
1
N
1
A
C5
BNG
184
D
C5
BNG
1
1
N
1
A
C6
BNG
184
D
C6
BNG
1
1
N
1
A
O1
BNG
184
D
O1
BNG
1
1
N
1
A
O2
BNG
184
D
O2
BNG
1
1
N
1
A
O3
BNG
184
D
O3
BNG
1
1
N
1
A
O4
BNG
184
D
O4
BNG
1
1
N
1
A
O5
BNG
184
D
O5
BNG
1
1
N
1
A
O6
BNG
184
D
O6
BNG
1
1
N
1
A
C1
BNG
186
F
C1
BNG
1
1
N
1
A
C2
BNG
186
F
C2
BNG
1
1
N
1
A
C3
BNG
186
F
C3
BNG
1
1
N
1
A
C4
BNG
186
F
C4
BNG
1
1
N
1
A
C5
BNG
186
F
C5
BNG
1
1
N
1
A
C6
BNG
186
F
C6
BNG
1
1
N
1
A
O1
BNG
186
F
O1
BNG
1
1
N
1
A
O2
BNG
186
F
O2
BNG
1
1
N
1
A
O3
BNG
186
F
O3
BNG
1
1
N
1
A
O4
BNG
186
F
O4
BNG
1
1
N
1
A
O5
BNG
186
F
O5
BNG
1
1
N
1
A
O6
BNG
186
F
O6
BNG
1
1
N
1
A
C1
BNG
188
H
C1
BNG
1
1
N
1
A
C2
BNG
188
H
C2
BNG
1
1
N
1
A
C3
BNG
188
H
C3
BNG
1
1
N
1
A
C4
BNG
188
H
C4
BNG
1
1
N
1
A
C5
BNG
188
H
C5
BNG
1
1
N
1
A
C6
BNG
188
H
C6
BNG
1
1
N
1
A
O1
BNG
188
H
O1
BNG
1
1
N
1
A
O2
BNG
188
H
O2
BNG
1
1
N
1
A
O3
BNG
188
H
O3
BNG
1
1
N
1
A
O4
BNG
188
H
O4
BNG
1
1
N
1
A
O5
BNG
188
H
O5
BNG
1
1
N
1
A
O6
BNG
188
H
O6
BNG
1
1
N
1
B
C1
BNG
183
K
C1
BNG
1
1
N
1
B
C2
BNG
183
K
C2
BNG
1
1
N
1
B
C3
BNG
183
K
C3
BNG
1
1
N
1
B
C4
BNG
183
K
C4
BNG
1
1
N
1
B
C5
BNG
183
K
C5
BNG
1
1
N
1
B
C6
BNG
183
K
C6
BNG
1
1
N
1
B
C1'
BNG
183
K
C1'
BNG
1
1
N
1
B
O1
BNG
183
K
O1
BNG
1
1
N
1
B
O2
BNG
183
K
O2
BNG
1
1
N
1
B
O3
BNG
183
K
O3
BNG
1
1
N
1
B
O4
BNG
183
K
O4
BNG
1
1
N
1
B
O5
BNG
183
K
O5
BNG
1
1
N
1
B
O6
BNG
183
K
O6
BNG
1
1
N
1
B
C1
BNG
185
M
C1
BNG
1
1
N
1
B
C2
BNG
185
M
C2
BNG
1
1
N
1
B
C3
BNG
185
M
C3
BNG
1
1
N
1
B
C4
BNG
185
M
C4
BNG
1
1
N
1
B
C5
BNG
185
M
C5
BNG
1
1
N
1
B
C6
BNG
185
M
C6
BNG
1
1
N
1
B
C1'
BNG
185
M
C1'
BNG
1
1
N
1
B
O1
BNG
185
M
O1
BNG
1
1
N
1
B
O2
BNG
185
M
O2
BNG
1
1
N
1
B
O3
BNG
185
M
O3
BNG
1
1
N
1
B
O4
BNG
185
M
O4
BNG
1
1
N
1
B
O5
BNG
185
M
O5
BNG
1
1
N
1
B
O6
BNG
185
M
O6
BNG
1
1
N
1
A
MET
-9
A
MET
1
1
Y
1
A
HIS
-8
A
HIS
2
1
Y
1
A
HIS
-7
A
HIS
3
1
Y
1
A
HIS
-6
A
HIS
4
1
Y
1
A
HIS
-5
A
HIS
5
1
Y
1
A
HIS
-4
A
HIS
6
1
Y
1
A
HIS
-3
A
HIS
7
1
Y
1
A
HIS
-2
A
HIS
8
1
Y
1
A
HIS
-1
A
HIS
9
1
Y
1
A
ALA
0
A
ALA
10
1
Y
1
A
MET
1
A
MET
11
1
Y
1
A
SER
2
A
SER
12
1
Y
1
A
ASN
3
A
ASN
13
1
Y
1
A
SER
4
A
SER
14
1
Y
1
A
LYS
5
A
LYS
15
1
Y
1
A
PHE
6
A
PHE
16
1
Y
1
B
MET
-9
B
MET
1
1
Y
1
B
HIS
-8
B
HIS
2
1
Y
1
B
HIS
-7
B
HIS
3
1
Y
1
B
HIS
-6
B
HIS
4
1
Y
1
B
HIS
-5
B
HIS
5
1
Y
1
B
HIS
-4
B
HIS
6
1
Y
1
B
HIS
-3
B
HIS
7
1
Y
1
B
HIS
-2
B
HIS
8
1
Y
1
B
HIS
-1
B
HIS
9
1
Y
1
B
ALA
0
B
ALA
10
1
Y
1
B
MET
1
B
MET
11
1
Y
1
B
SER
2
B
SER
12
1
Y
1
B
ASN
3
B
ASN
13
1
Y
1
B
SER
4
B
SER
14
1
Y
1
B
LYS
5
B
LYS
15
1
Y
1
A
C1
BNG
187
PLANAR
1
A
C2
BNG
187
WRONG HAND
1
A
C3
BNG
187
WRONG HAND
1
A
C4
BNG
187
WRONG HAND
1
A
C5
BNG
187
WRONG HAND
1
A
A
N
O
ASN
HOH
7
214
2.17
1
A
A
NZ
O
LYS
LYS
139
171
2.12
1_555
3_545
1
A
ASN
29
-141.33
21.70
1
A
PHE
173
-143.66
53.57
1
B
TYR
32
-160.37
114.47
1
B
LEU
86
-121.18
-61.93
33.193
0.03
-0.00
0.02
0.04
-0.00
-0.06
0.938
0.930
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.23045
0.20577
0.20701
2.00
47.58
2165
41123
5.0
100.00
1.000
0.500
6.958
0.087
RANDOM
1
THROUGHOUT
MAD
0.135
0.127
0.80
0.80
1.40
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
2.00
47.58
72
3007
194
0
2741
0.019
0.022
3021
0.001
0.020
2075
1.633
2.017
4086
1.134
3.000
5086
5.469
5.000
353
34.459
21.395
86
13.031
15.000
452
26.002
15.000
8
0.134
0.200
493
0.008
0.020
3085
0.001
0.020
643
0.799
1.500
1751
0.263
1.500
724
1.353
2.000
2821
2.225
3.000
1270
3.369
4.500
1265
1
A
1
2264
X-RAY DIFFRACTION
loose positional
0.49
5.00
1
A
1
2264
X-RAY DIFFRACTION
loose thermal
1.35
10.00
0.297
0.280
2.052
150
2856
20
100.00
2.00
47.585
3RLB
43288
43288
2
0.058
0.068
1
13.4
3.7
98.4
0.529
2.0
2.12
2.5
0.618
1
96.6
data scaling
Wolfgang Kabsch
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html
XSCALE
package
phasing
Tom Terwilliger
terwilliger@LANL.gov
http://www.solve.lanl.gov/
SOLVE
program
phasing
Thomas C. Terwilliger
terwilliger@lanl.gov
20-Mar-2010
http://www.solve.lanl.gov/
RESOLVE
program
2.15
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
24/04/2001
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
refmac_5.5.0109
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
data reduction
XDS
data scaling
XDS
Crystal structure at 2.0 A of the S-component for thiamin from an ECF-type ABC transporter
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
4
N
N
4
N
N
A
ASN
7
A
ASN
17
HELX_P
A
SER
25
A
SER
35
1
1
19
A
GLU
38
A
GLU
48
HELX_P
A
ALA
40
A
ALA
50
5
2
3
A
CYS
41
A
CYS
51
HELX_P
A
GLY
52
A
GLY
62
1
3
12
A
GLY
52
A
GLY
62
HELX_P
A
THR
70
A
THR
80
1
4
19
A
SER
77
A
SER
87
HELX_P
A
LEU
86
A
LEU
96
1
5
10
A
LEU
86
A
LEU
96
HELX_P
A
LEU
92
A
LEU
102
1
6
7
A
GLY
93
A
GLY
103
HELX_P
A
ARG
99
A
ARG
109
5
7
7
A
LYS
106
A
LYS
116
HELX_P
A
TRP
133
A
TRP
143
1
8
28
A
SER
134
A
SER
144
HELX_P
A
ALA
137
A
ALA
147
5
9
4
A
GLY
142
A
GLY
152
HELX_P
A
PHE
173
A
PHE
183
1
10
32
A
PRO
174
A
PRO
184
HELX_P
A
ILE
178
A
ILE
188
5
11
5
B
PHE
6
B
PHE
16
HELX_P
B
LEU
26
B
LEU
36
1
12
21
B
ALA
40
B
ALA
50
HELX_P
B
GLY
52
B
GLY
62
1
13
13
B
GLY
52
B
GLY
62
HELX_P
B
THR
70
B
THR
80
1
14
19
B
SER
77
B
SER
87
HELX_P
B
LEU
86
B
LEU
96
1
15
10
B
LEU
86
B
LEU
96
HELX_P
B
LEU
92
B
LEU
102
1
16
7
B
GLY
93
B
GLY
103
HELX_P
B
ARG
99
B
ARG
109
5
17
7
B
LYS
106
B
LYS
116
HELX_P
B
TRP
133
B
TRP
143
1
18
28
B
SER
134
B
SER
144
HELX_P
B
ALA
137
B
ALA
147
5
19
4
B
GLY
142
B
GLY
152
HELX_P
B
PHE
173
B
PHE
183
1
20
32
B
PRO
174
B
PRO
184
HELX_P
B
ILE
178
B
ILE
188
5
21
5
THIAMINE-BINDING PROTEIN
S-component, ECF transporter, ABC transporter, Substrate-binding domain, membrane, THIAMINE-BINDING PROTEIN
A
ALA
103
A
ALA
113
1
A
PRO
104
A
PRO
114
-6.43
B
ALA
103
B
ALA
113
1
B
PRO
104
B
PRO
114
-3.53
A
B
A
ASN
7
A
ASN
17
A
TYR
182
A
TYR
192
6
B
ASN
7
B
ASN
17
B
TYR
182
B
TYR
192
6
D8KFM5_LACLN
UNP
1
1
D8KFM5
MSNSKFNVRLLTEIAFMAALAFIISLIPNTVYGWIIVEIACIPILLLSLRRGLTAGLVGGLIWGILSMITGHAYILSLSQ
AFLEYLVAPVSLGIAGLFRQKTAPLKLAPVLLGTFVAVLLKYFFHFIAGIIFWSQYAWKGWGAVAYSLAVNGISGILTAI
AAFVILIIFVKKFPKLFIHSNY
1
182
3RLB
1
182
D8KFM5
A
1
11
192
1
182
3RLB
1
182
D8KFM5
B
1
11
192
1
expression tag
MET
-9
3RLB
A
D8KFM5
UNP
1
1
expression tag
HIS
-8
3RLB
A
D8KFM5
UNP
2
1
expression tag
HIS
-7
3RLB
A
D8KFM5
UNP
3
1
expression tag
HIS
-6
3RLB
A
D8KFM5
UNP
4
1
expression tag
HIS
-5
3RLB
A
D8KFM5
UNP
5
1
expression tag
HIS
-4
3RLB
A
D8KFM5
UNP
6
1
expression tag
HIS
-3
3RLB
A
D8KFM5
UNP
7
1
expression tag
HIS
-2
3RLB
A
D8KFM5
UNP
8
1
expression tag
HIS
-1
3RLB
A
D8KFM5
UNP
9
1
expression tag
ALA
0
3RLB
A
D8KFM5
UNP
10
2
expression tag
MET
-9
3RLB
B
D8KFM5
UNP
1
2
expression tag
HIS
-8
3RLB
B
D8KFM5
UNP
2
2
expression tag
HIS
-7
3RLB
B
D8KFM5
UNP
3
2
expression tag
HIS
-6
3RLB
B
D8KFM5
UNP
4
2
expression tag
HIS
-5
3RLB
B
D8KFM5
UNP
5
2
expression tag
HIS
-4
3RLB
B
D8KFM5
UNP
6
2
expression tag
HIS
-3
3RLB
B
D8KFM5
UNP
7
2
expression tag
HIS
-2
3RLB
B
D8KFM5
UNP
8
2
expression tag
HIS
-1
3RLB
B
D8KFM5
UNP
9
2
expression tag
ALA
0
3RLB
B
D8KFM5
UNP
10
2
2
anti-parallel
anti-parallel
A
THR
30
A
THR
40
A
TYR
32
A
TYR
42
A
ILE
35
A
ILE
45
A
ILE
36
A
ILE
46
B
THR
30
B
THR
40
B
TYR
32
B
TYR
42
B
ILE
35
B
ILE
45
B
ILE
36
B
ILE
46
5
C 1 2 1