0.014265
0.000000
0.002618
0.000000
0.014065
0.000000
0.000000
0.000000
0.013985
0.00000
0.00000
0.00000
Biela, A.
Heine, A.
Klebe, G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
100.40
90.00
70.100
71.100
72.700
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C23 H29 Cl N4 O4 S
493.019
N-(benzylsulfonyl)-D-alanyl-N-[2-(aminomethyl)-5-chlorobenzyl]-L-prolinamide
peptide-like
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C9 H11 N O6 S
261.252
n
O-SULFO-L-TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
C
N
138
N
O
N
139
N
C
N
140
N
O
N
141
N
C
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
N
N
152
S
C
N
153
N
C
N
154
N
O
N
155
N
C
Y
156
N
C
Y
157
N
N
Y
158
N
C
Y
159
N
C
Y
160
N
N
N
161
N
O
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
O
N
173
N
H
N
174
N
H
N
175
N
N
N
176
S
C
N
177
N
C
N
178
N
O
N
179
S
C
N
180
N
C
N
181
N
C
N
182
N
C
N
183
N
O
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
N
N
198
S
C
N
199
N
C
N
200
N
O
N
201
N
C
N
202
N
C
N
203
N
C
N
204
N
C
N
205
N
O
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
N
N
220
S
C
N
221
N
C
N
222
N
O
N
223
N
C
N
224
N
C
N
225
N
C
N
226
N
C
N
227
N
N
N
228
N
O
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
C
N
245
N
S
Y
246
N
C
Y
247
N
C
Y
248
N
C
Y
249
N
C
Y
250
N
C
Y
251
N
C
N
252
N
O
N
253
N
O
N
254
N
N
N
255
R
C
N
256
N
C
N
257
N
C
N
258
N
O
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
N
N
267
N
C
Y
268
N
C
Y
269
N
C
N
270
N
C
N
271
N
N
Y
272
N
C
Y
273
N
C
Y
274
N
C
N
275
N
CL
Y
276
N
C
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
N
N
307
S
C
N
308
N
C
N
309
N
O
N
310
N
C
N
311
N
C
N
312
N
S
N
313
N
C
N
314
N
O
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
NA
N
327
R
C
N
328
R
C
N
329
R
C
N
330
S
C
N
331
R
C
N
332
N
C
N
333
N
C
N
334
N
C
N
335
N
N
N
336
N
O
N
337
N
O
N
338
N
O
N
339
N
O
N
340
N
O
N
341
N
O
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
N
N
358
S
C
N
359
N
C
N
360
N
O
N
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
C
Y
365
N
C
Y
366
N
C
Y
367
N
C
N
368
N
O
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
P
N
381
N
O
N
382
N
O
N
383
N
O
N
384
N
O
N
385
N
N
N
386
S
C
N
387
N
C
N
388
N
O
N
389
N
C
N
390
N
C
N
391
N
C
N
392
N
O
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
N
N
403
S
C
N
404
N
C
N
405
N
O
N
406
N
C
N
407
N
O
N
408
N
O
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
N
N
417
S
C
N
418
N
C
N
419
N
O
N
420
R
C
N
421
N
O
N
422
N
C
N
423
N
O
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
N
N
434
S
C
N
435
N
C
N
436
N
O
N
437
N
C
Y
438
N
C
Y
439
N
C
Y
440
N
C
Y
441
N
N
Y
442
N
C
Y
443
N
C
Y
444
N
C
Y
445
N
C
Y
446
N
C
N
447
N
O
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
N
N
461
S
C
N
462
N
C
N
463
N
O
N
464
N
C
Y
465
N
C
Y
466
N
C
Y
467
N
C
Y
468
N
C
Y
469
N
C
Y
470
N
C
N
471
N
O
N
472
N
O
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
N
N
485
S
C
N
486
N
C
Y
487
N
C
Y
488
N
C
Y
489
N
C
Y
490
N
C
Y
491
N
C
Y
492
N
C
N
493
N
O
N
494
N
S
N
495
N
O
N
496
N
O
N
497
N
O
N
498
N
C
N
499
N
O
N
500
N
O
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
N
N
513
S
C
N
514
N
C
N
515
N
O
N
516
N
C
N
517
N
C
N
518
N
C
N
519
N
O
N
520
N
H
N
521
N
H
N
522
N
H
N
523
N
H
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
H
N
530
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
Y
153
N
sing
Y
154
N
doub
Y
155
N
doub
N
156
N
sing
Y
157
N
sing
N
158
N
sing
Y
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
doub
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
Y
231
N
doub
Y
232
N
sing
Y
233
N
sing
N
234
N
sing
Y
235
N
sing
Y
236
N
doub
Y
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
doub
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
doub
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
Y
258
N
doub
Y
259
N
sing
N
260
N
sing
Y
261
N
sing
N
262
N
sing
Y
263
N
doub
Y
264
N
sing
Y
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
doub
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
doub
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
doub
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
Y
355
N
doub
Y
356
N
sing
Y
357
N
sing
N
358
N
sing
Y
359
N
doub
N
360
N
sing
Y
361
N
doub
N
362
N
sing
Y
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
doub
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
doub
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
doub
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
doub
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
doub
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
Y
428
N
doub
Y
429
N
sing
Y
430
N
sing
N
431
N
sing
Y
432
N
doub
Y
433
N
sing
Y
434
N
sing
N
435
N
sing
Y
436
N
sing
Y
437
N
doub
N
438
N
sing
Y
439
N
doub
N
440
N
sing
Y
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
doub
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
Y
456
N
doub
Y
457
N
sing
Y
458
N
sing
N
459
N
sing
Y
460
N
doub
N
461
N
sing
Y
462
N
doub
N
463
N
sing
Y
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
Y
478
N
doub
Y
479
N
sing
Y
480
N
sing
N
481
N
sing
Y
482
N
doub
N
483
N
sing
Y
484
N
doub
N
485
N
sing
Y
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
doub
N
491
N
doub
N
492
N
sing
N
493
N
sing
N
494
N
doub
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
doub
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
sing
US
J.Med.Chem.
JMCMAR
0151
0022-2623
55
6094
6110
10.1021/jm300337q
22612268
Ligand binding stepwise disrupts water network in thrombin: enthalpic and entropic changes reveal classical hydrophobic effect
2012
10.2210/pdb3rmm/pdb
pdb_00003rmm
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
Collimating mirror
CCD
2009-07-31
MARMOSAIC 225 mm CCD
Bartels Monochromator
SINGLE WAVELENGTH
M
x-ray
1
1.00
1.0
X06DA
SLS
1.00
SYNCHROTRON
SLS BEAMLINE X06DA
4096.534
Thrombin Light Chain
3.4.21.5
1
nat
polymer
29780.219
Thrombin Heavy Chain
3.4.21.5
1
nat
polymer
1662.683
Hirudin variant-2
residues in UNP 60-72
1
syn
polymer
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
non-polymer
493.019
N-(benzylsulfonyl)-D-alanyl-N-[2-(aminomethyl)-5-chlorobenzyl]-L-prolinamide
1
syn
non-polymer
92.094
GLYCEROL
2
syn
non-polymer
94.971
PHOSPHATE ION
1
syn
non-polymer
22.990
SODIUM ION
2
syn
non-polymer
18.015
water
305
nat
water
no
no
TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR
TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR
L
polypeptide(L)
no
no
IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM
LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL
QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY
THVFRLKKWIQKVIDQFGE
IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM
LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL
QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY
THVFRLKKWIQKVIDQFGE
H
polypeptide(L)
no
yes
NGDFEEIPEE(TYS)LQ
NGDFEEIPEEYLQ
I
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
9606
Homo sapiens
Human
sample
9606
Homo sapiens
1
2.51
50.94
VAPOR DIFFUSION, HANGING DROP
7.5
15% PEG 8000, 20mM sodium phosphate, 175mM sodium chloride, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277.15K
277.15
chem_comp
entity
pdbx_chem_comp_identifier
pdbx_entity_nonpoly
pdbx_struct_special_symmetry
struct_conn
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
chem_comp_atom
chem_comp_bond
repository
Initial release
Carbohydrate remediation
repository
Remediation
Other
Database references
Data collection
Derived calculations
Structure summary
Data collection
Database references
Refinement description
Structure summary
Data collection
1
0
2012-04-25
1
1
2012-12-12
1
2
2016-07-13
1
3
2020-07-29
1
4
2023-11-01
1
5
2023-12-06
_chem_comp.name
_chem_comp.type
_entity.pdbx_description
_pdbx_entity_nonpoly.name
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_role
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_chem_comp_atom.atom_id
_chem_comp_bond.atom_id_2
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
RCSB
Y
PDBJ
2011-04-21
REL
REL
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose
M32
N-(benzylsulfonyl)-D-alanyl-N-[2-(aminomethyl)-5-chlorobenzyl]-L-prolinamide
GOL
GLYCEROL
PO4
PHOSPHATE ION
NA
SODIUM ION
HOH
water
Synthetic Fragment of Hirudin from Hirudo Medicinalis
6421
Medicinal leech
Hirudo medicinalis
sample
1H8D
PDB
experimental model
Thrombin inhibitor
N-(BENZYLSULFONYL)-D-ALANYL-N-[2-(AMINOMETHYL)-5-CHLOROBENZYL]-L-PROLINAMIDE
Peptide-like
NAG
260
4
NAG
G
NAG
260
H
M32
1
5
M32
M32
1
H
GOL
2
6
GOL
GOL
2
H
GOL
3
6
GOL
GOL
3
H
PO4
4
7
PO4
PO4
4
H
NA
5
8
NA
NA
5
H
NA
6
8
NA
NA
6
H
HOH
1001
9
HOH
HOH
1001
L
HOH
1002
9
HOH
HOH
1002
L
HOH
1003
9
HOH
HOH
1003
L
HOH
1004
9
HOH
HOH
1004
L
HOH
1005
9
HOH
HOH
1005
L
HOH
1006
9
HOH
HOH
1006
L
HOH
1007
9
HOH
HOH
1007
L
HOH
1008
9
HOH
HOH
1008
L
HOH
1009
9
HOH
HOH
1009
L
HOH
1010
9
HOH
HOH
1010
L
HOH
1011
9
HOH
HOH
1011
L
HOH
1012
9
HOH
HOH
1012
L
HOH
1013
9
HOH
HOH
1013
L
HOH
1014
9
HOH
HOH
1014
L
HOH
1015
9
HOH
HOH
1015
L
HOH
1016
9
HOH
HOH
1016
L
HOH
1017
9
HOH
HOH
1017
L
HOH
1018
9
HOH
HOH
1018
L
HOH
1019
9
HOH
HOH
1019
L
HOH
1020
9
HOH
HOH
1020
L
HOH
1021
9
HOH
HOH
1021
L
HOH
1022
9
HOH
HOH
1022
L
HOH
1023
9
HOH
HOH
1023
L
HOH
1024
9
HOH
HOH
1024
L
HOH
1025
9
HOH
HOH
1025
L
HOH
1026
9
HOH
HOH
1026
L
HOH
1027
9
HOH
HOH
1027
L
HOH
1028
9
HOH
HOH
1028
L
HOH
1029
9
HOH
HOH
1029
L
HOH
1030
9
HOH
HOH
1030
L
HOH
1031
9
HOH
HOH
1031
L
HOH
1032
9
HOH
HOH
1032
L
HOH
1033
9
HOH
HOH
1033
L
HOH
1034
9
HOH
HOH
1034
L
HOH
1035
9
HOH
HOH
1035
L
HOH
1036
9
HOH
HOH
1036
L
HOH
1037
9
HOH
HOH
1037
L
HOH
1038
9
HOH
HOH
1038
L
HOH
1039
9
HOH
HOH
1039
L
HOH
1040
9
HOH
HOH
1040
L
HOH
1041
9
HOH
HOH
1041
L
HOH
1042
9
HOH
HOH
1042
H
HOH
1043
9
HOH
HOH
1043
H
HOH
1044
9
HOH
HOH
1044
H
HOH
1045
9
HOH
HOH
1045
H
HOH
1046
9
HOH
HOH
1046
H
HOH
1047
9
HOH
HOH
1047
H
HOH
1048
9
HOH
HOH
1048
H
HOH
1049
9
HOH
HOH
1049
H
HOH
1050
9
HOH
HOH
1050
H
HOH
1051
9
HOH
HOH
1051
H
HOH
1052
9
HOH
HOH
1052
H
HOH
1053
9
HOH
HOH
1053
H
HOH
1054
9
HOH
HOH
1054
H
HOH
1055
9
HOH
HOH
1055
H
HOH
1056
9
HOH
HOH
1056
H
HOH
1057
9
HOH
HOH
1057
H
HOH
1058
9
HOH
HOH
1058
H
HOH
1059
9
HOH
HOH
1059
H
HOH
1060
9
HOH
HOH
1060
H
HOH
1061
9
HOH
HOH
1061
H
HOH
1062
9
HOH
HOH
1062
H
HOH
1063
9
HOH
HOH
1063
H
HOH
1064
9
HOH
HOH
1064
H
HOH
1065
9
HOH
HOH
1065
H
HOH
1066
9
HOH
HOH
1066
H
HOH
1067
9
HOH
HOH
1067
H
HOH
1068
9
HOH
HOH
1068
H
HOH
1069
9
HOH
HOH
1069
H
HOH
1070
9
HOH
HOH
1070
H
HOH
1071
9
HOH
HOH
1071
H
HOH
1072
9
HOH
HOH
1072
H
HOH
1073
9
HOH
HOH
1073
H
HOH
1074
9
HOH
HOH
1074
H
HOH
1075
9
HOH
HOH
1075
H
HOH
1076
9
HOH
HOH
1076
H
HOH
1077
9
HOH
HOH
1077
H
HOH
1078
9
HOH
HOH
1078
H
HOH
1079
9
HOH
HOH
1079
H
HOH
1080
9
HOH
HOH
1080
H
HOH
1081
9
HOH
HOH
1081
H
HOH
1082
9
HOH
HOH
1082
H
HOH
1083
9
HOH
HOH
1083
H
HOH
1084
9
HOH
HOH
1084
H
HOH
1085
9
HOH
HOH
1085
H
HOH
1086
9
HOH
HOH
1086
H
HOH
1087
9
HOH
HOH
1087
H
HOH
1088
9
HOH
HOH
1088
H
HOH
1089
9
HOH
HOH
1089
H
HOH
1090
9
HOH
HOH
1090
H
HOH
1091
9
HOH
HOH
1091
H
HOH
1092
9
HOH
HOH
1092
H
HOH
1093
9
HOH
HOH
1093
H
HOH
1094
9
HOH
HOH
1094
H
HOH
1095
9
HOH
HOH
1095
H
HOH
1096
9
HOH
HOH
1096
H
HOH
1097
9
HOH
HOH
1097
H
HOH
1098
9
HOH
HOH
1098
H
HOH
1099
9
HOH
HOH
1099
H
HOH
1100
9
HOH
HOH
1100
H
HOH
1101
9
HOH
HOH
1101
H
HOH
1102
9
HOH
HOH
1102
H
HOH
1103
9
HOH
HOH
1103
H
HOH
1104
9
HOH
HOH
1104
H
HOH
1105
9
HOH
HOH
1105
H
HOH
1106
9
HOH
HOH
1106
H
HOH
1107
9
HOH
HOH
1107
H
HOH
1108
9
HOH
HOH
1108
H
HOH
1109
9
HOH
HOH
1109
H
HOH
1110
9
HOH
HOH
1110
H
HOH
1111
9
HOH
HOH
1111
H
HOH
1112
9
HOH
HOH
1112
H
HOH
1113
9
HOH
HOH
1113
H
HOH
1114
9
HOH
HOH
1114
H
HOH
1115
9
HOH
HOH
1115
H
HOH
1116
9
HOH
HOH
1116
H
HOH
1117
9
HOH
HOH
1117
H
HOH
1118
9
HOH
HOH
1118
H
HOH
1119
9
HOH
HOH
1119
H
HOH
1120
9
HOH
HOH
1120
H
HOH
1121
9
HOH
HOH
1121
H
HOH
1122
9
HOH
HOH
1122
H
HOH
1123
9
HOH
HOH
1123
H
HOH
1124
9
HOH
HOH
1124
H
HOH
1125
9
HOH
HOH
1125
H
HOH
1126
9
HOH
HOH
1126
H
HOH
1127
9
HOH
HOH
1127
H
HOH
1128
9
HOH
HOH
1128
H
HOH
1129
9
HOH
HOH
1129
H
HOH
1130
9
HOH
HOH
1130
H
HOH
1131
9
HOH
HOH
1131
H
HOH
1132
9
HOH
HOH
1132
H
HOH
1133
9
HOH
HOH
1133
H
HOH
1134
9
HOH
HOH
1134
H
HOH
1135
9
HOH
HOH
1135
H
HOH
1136
9
HOH
HOH
1136
H
HOH
1137
9
HOH
HOH
1137
H
HOH
1138
9
HOH
HOH
1138
H
HOH
1139
9
HOH
HOH
1139
H
HOH
1140
9
HOH
HOH
1140
H
HOH
1141
9
HOH
HOH
1141
H
HOH
1142
9
HOH
HOH
1142
H
HOH
1143
9
HOH
HOH
1143
H
HOH
1144
9
HOH
HOH
1144
H
HOH
1145
9
HOH
HOH
1145
H
HOH
1146
9
HOH
HOH
1146
H
HOH
1147
9
HOH
HOH
1147
H
HOH
1148
9
HOH
HOH
1148
H
HOH
1149
9
HOH
HOH
1149
H
HOH
1150
9
HOH
HOH
1150
H
HOH
1151
9
HOH
HOH
1151
H
HOH
1152
9
HOH
HOH
1152
H
HOH
1153
9
HOH
HOH
1153
H
HOH
1154
9
HOH
HOH
1154
H
HOH
1155
9
HOH
HOH
1155
H
HOH
1156
9
HOH
HOH
1156
H
HOH
1157
9
HOH
HOH
1157
H
HOH
1158
9
HOH
HOH
1158
H
HOH
1159
9
HOH
HOH
1159
H
HOH
1160
9
HOH
HOH
1160
H
HOH
1161
9
HOH
HOH
1161
H
HOH
1162
9
HOH
HOH
1162
H
HOH
1163
9
HOH
HOH
1163
H
HOH
1164
9
HOH
HOH
1164
H
HOH
1165
9
HOH
HOH
1165
H
HOH
1166
9
HOH
HOH
1166
H
HOH
1167
9
HOH
HOH
1167
H
HOH
1168
9
HOH
HOH
1168
H
HOH
1169
9
HOH
HOH
1169
H
HOH
1170
9
HOH
HOH
1170
H
HOH
1171
9
HOH
HOH
1171
H
HOH
1172
9
HOH
HOH
1172
H
HOH
1173
9
HOH
HOH
1173
H
HOH
1174
9
HOH
HOH
1174
H
HOH
1175
9
HOH
HOH
1175
H
HOH
1176
9
HOH
HOH
1176
H
HOH
1177
9
HOH
HOH
1177
H
HOH
1178
9
HOH
HOH
1178
H
HOH
1179
9
HOH
HOH
1179
H
HOH
1180
9
HOH
HOH
1180
H
HOH
1181
9
HOH
HOH
1181
H
HOH
1182
9
HOH
HOH
1182
H
HOH
1183
9
HOH
HOH
1183
H
HOH
1184
9
HOH
HOH
1184
H
HOH
1185
9
HOH
HOH
1185
H
HOH
1186
9
HOH
HOH
1186
H
HOH
1187
9
HOH
HOH
1187
H
HOH
1188
9
HOH
HOH
1188
H
HOH
1189
9
HOH
HOH
1189
H
HOH
1190
9
HOH
HOH
1190
H
HOH
1191
9
HOH
HOH
1191
H
HOH
1192
9
HOH
HOH
1192
H
HOH
1193
9
HOH
HOH
1193
H
HOH
1194
9
HOH
HOH
1194
H
HOH
1195
9
HOH
HOH
1195
H
HOH
1196
9
HOH
HOH
1196
H
HOH
1197
9
HOH
HOH
1197
H
HOH
1198
9
HOH
HOH
1198
H
HOH
1199
9
HOH
HOH
1199
H
HOH
1200
9
HOH
HOH
1200
H
HOH
1201
9
HOH
HOH
1201
H
HOH
1202
9
HOH
HOH
1202
H
HOH
1203
9
HOH
HOH
1203
H
HOH
1204
9
HOH
HOH
1204
H
HOH
1205
9
HOH
HOH
1205
H
HOH
1206
9
HOH
HOH
1206
H
HOH
1207
9
HOH
HOH
1207
H
HOH
1208
9
HOH
HOH
1208
H
HOH
1209
9
HOH
HOH
1209
H
HOH
1210
9
HOH
HOH
1210
H
HOH
1211
9
HOH
HOH
1211
H
HOH
1212
9
HOH
HOH
1212
H
HOH
1213
9
HOH
HOH
1213
H
HOH
1214
9
HOH
HOH
1214
H
HOH
1215
9
HOH
HOH
1215
H
HOH
1216
9
HOH
HOH
1216
H
HOH
1217
9
HOH
HOH
1217
H
HOH
1218
9
HOH
HOH
1218
H
HOH
1219
9
HOH
HOH
1219
H
HOH
1220
9
HOH
HOH
1220
H
HOH
1221
9
HOH
HOH
1221
H
HOH
1222
9
HOH
HOH
1222
H
HOH
1223
9
HOH
HOH
1223
H
HOH
1224
9
HOH
HOH
1224
H
HOH
1225
9
HOH
HOH
1225
H
HOH
1226
9
HOH
HOH
1226
H
HOH
1227
9
HOH
HOH
1227
H
HOH
1228
9
HOH
HOH
1228
H
HOH
1229
9
HOH
HOH
1229
H
HOH
1230
9
HOH
HOH
1230
H
HOH
1231
9
HOH
HOH
1231
H
HOH
1232
9
HOH
HOH
1232
H
HOH
1233
9
HOH
HOH
1233
H
HOH
1234
9
HOH
HOH
1234
H
HOH
1235
9
HOH
HOH
1235
H
HOH
1236
9
HOH
HOH
1236
H
HOH
1237
9
HOH
HOH
1237
H
HOH
1238
9
HOH
HOH
1238
H
HOH
1239
9
HOH
HOH
1239
H
HOH
1240
9
HOH
HOH
1240
H
HOH
1241
9
HOH
HOH
1241
H
HOH
1242
9
HOH
HOH
1242
H
HOH
1243
9
HOH
HOH
1243
H
HOH
1244
9
HOH
HOH
1244
H
HOH
1245
9
HOH
HOH
1245
H
HOH
1246
9
HOH
HOH
1246
H
HOH
1247
9
HOH
HOH
1247
H
HOH
1248
9
HOH
HOH
1248
H
HOH
1249
9
HOH
HOH
1249
H
HOH
1250
9
HOH
HOH
1250
H
HOH
1251
9
HOH
HOH
1251
H
HOH
1252
9
HOH
HOH
1252
H
HOH
1253
9
HOH
HOH
1253
H
HOH
1254
9
HOH
HOH
1254
H
HOH
1255
9
HOH
HOH
1255
H
HOH
1256
9
HOH
HOH
1256
H
HOH
1257
9
HOH
HOH
1257
H
HOH
1258
9
HOH
HOH
1258
H
HOH
1259
9
HOH
HOH
1259
H
HOH
1260
9
HOH
HOH
1260
H
HOH
1261
9
HOH
HOH
1261
H
HOH
1262
9
HOH
HOH
1262
H
HOH
1263
9
HOH
HOH
1263
H
HOH
1264
9
HOH
HOH
1264
H
HOH
1265
9
HOH
HOH
1265
H
HOH
1266
9
HOH
HOH
1266
H
HOH
1267
9
HOH
HOH
1267
H
HOH
1268
9
HOH
HOH
1268
H
HOH
1269
9
HOH
HOH
1269
H
HOH
1270
9
HOH
HOH
1270
H
HOH
1271
9
HOH
HOH
1271
H
HOH
1272
9
HOH
HOH
1272
H
HOH
1273
9
HOH
HOH
1273
H
HOH
1274
9
HOH
HOH
1274
H
HOH
1275
9
HOH
HOH
1275
H
HOH
1276
9
HOH
HOH
1276
H
HOH
1277
9
HOH
HOH
1277
H
HOH
1278
9
HOH
HOH
1278
H
HOH
1279
9
HOH
HOH
1279
H
HOH
1280
9
HOH
HOH
1280
H
HOH
1281
9
HOH
HOH
1281
H
HOH
1282
9
HOH
HOH
1282
H
HOH
1283
9
HOH
HOH
1283
H
HOH
1284
9
HOH
HOH
1284
H
HOH
1285
9
HOH
HOH
1285
H
HOH
1286
9
HOH
HOH
1286
H
HOH
1287
9
HOH
HOH
1287
H
HOH
1288
9
HOH
HOH
1288
H
HOH
1289
9
HOH
HOH
1289
H
HOH
1290
9
HOH
HOH
1290
H
HOH
1291
9
HOH
HOH
1291
H
HOH
1292
9
HOH
HOH
1292
H
HOH
1293
9
HOH
HOH
1293
H
HOH
1294
9
HOH
HOH
1294
H
HOH
1295
9
HOH
HOH
1295
H
HOH
1296
9
HOH
HOH
1296
H
HOH
1297
9
HOH
HOH
1297
H
HOH
1298
9
HOH
HOH
1298
H
HOH
1299
9
HOH
HOH
1299
H
HOH
1300
9
HOH
HOH
1300
H
HOH
1301
9
HOH
HOH
1301
H
HOH
1302
9
HOH
HOH
1302
H
HOH
1303
9
HOH
HOH
1303
I
HOH
1304
9
HOH
HOH
1304
I
HOH
1305
9
HOH
HOH
1305
I
n
1
H
1
L
n
2
G
1
L
n
3
F
1
L
n
4
E
1
L
n
5
D
1
L
GLU
1
n
6
C
GLU
1
L
ALA
1
n
7
B
ALA
1
L
ASP
1
n
8
A
ASP
1
L
CYS
1
n
9
CYS
1
L
GLY
2
n
10
GLY
2
L
LEU
3
n
11
LEU
3
L
ARG
4
n
12
ARG
4
L
PRO
5
n
13
PRO
5
L
LEU
6
n
14
LEU
6
L
PHE
7
n
15
PHE
7
L
GLU
8
n
16
GLU
8
L
LYS
9
n
17
LYS
9
L
LYS
10
n
18
LYS
10
L
SER
11
n
19
SER
11
L
LEU
12
n
20
LEU
12
L
GLU
13
n
21
GLU
13
L
ASP
14
n
22
ASP
14
L
LYS
14
n
23
A
LYS
14
L
THR
14
n
24
B
THR
14
L
GLU
14
n
25
C
GLU
14
L
ARG
14
n
26
D
ARG
14
L
GLU
14
n
27
E
GLU
14
L
LEU
14
n
28
F
LEU
14
L
LEU
14
n
29
G
LEU
14
L
GLU
14
n
30
H
GLU
14
L
SER
14
n
31
I
SER
14
L
TYR
14
n
32
J
TYR
14
L
ILE
14
n
33
K
ILE
14
L
n
34
L
14
L
n
35
M
14
L
n
36
15
L
ILE
16
n
1
ILE
16
H
VAL
17
n
2
VAL
17
H
GLU
18
n
3
GLU
18
H
GLY
19
n
4
GLY
19
H
SER
20
n
5
SER
20
H
ASP
21
n
6
ASP
21
H
ALA
22
n
7
ALA
22
H
GLU
23
n
8
GLU
23
H
ILE
24
n
9
ILE
24
H
GLY
25
n
10
GLY
25
H
MET
26
n
11
MET
26
H
SER
27
n
12
SER
27
H
PRO
28
n
13
PRO
28
H
TRP
29
n
14
TRP
29
H
GLN
30
n
15
GLN
30
H
VAL
31
n
16
VAL
31
H
MET
32
n
17
MET
32
H
LEU
33
n
18
LEU
33
H
PHE
34
n
19
PHE
34
H
ARG
35
n
20
ARG
35
H
LYS
36
n
21
LYS
36
H
SER
36
n
22
A
SER
36
H
PRO
37
n
23
PRO
37
H
GLN
38
n
24
GLN
38
H
GLU
39
n
25
GLU
39
H
LEU
40
n
26
LEU
40
H
LEU
41
n
27
LEU
41
H
CYS
42
n
28
CYS
42
H
GLY
43
n
29
GLY
43
H
ALA
44
n
30
ALA
44
H
SER
45
n
31
SER
45
H
LEU
46
n
32
LEU
46
H
ILE
47
n
33
ILE
47
H
SER
48
n
34
SER
48
H
ASP
49
n
35
ASP
49
H
ARG
50
n
36
ARG
50
H
TRP
51
n
37
TRP
51
H
VAL
52
n
38
VAL
52
H
LEU
53
n
39
LEU
53
H
THR
54
n
40
THR
54
H
ALA
55
n
41
ALA
55
H
ALA
56
n
42
ALA
56
H
HIS
57
n
43
HIS
57
H
CYS
58
n
44
CYS
58
H
LEU
59
n
45
LEU
59
H
LEU
60
n
46
LEU
60
H
TYR
60
n
47
A
TYR
60
H
PRO
60
n
48
B
PRO
60
H
PRO
60
n
49
C
PRO
60
H
TRP
60
n
50
D
TRP
60
H
ASP
60
n
51
E
ASP
60
H
LYS
60
n
52
F
LYS
60
H
ASN
60
n
53
G
ASN
60
H
PHE
60
n
54
H
PHE
60
H
THR
60
n
55
I
THR
60
H
GLU
61
n
56
GLU
61
H
ASN
62
n
57
ASN
62
H
ASP
63
n
58
ASP
63
H
LEU
64
n
59
LEU
64
H
LEU
65
n
60
LEU
65
H
VAL
66
n
61
VAL
66
H
ARG
67
n
62
ARG
67
H
ILE
68
n
63
ILE
68
H
GLY
69
n
64
GLY
69
H
LYS
70
n
65
LYS
70
H
HIS
71
n
66
HIS
71
H
SER
72
n
67
SER
72
H
ARG
73
n
68
ARG
73
H
THR
74
n
69
THR
74
H
ARG
75
n
70
ARG
75
H
TYR
76
n
71
TYR
76
H
GLU
77
n
72
GLU
77
H
ARG
77
n
73
A
ARG
77
H
ASN
78
n
74
ASN
78
H
ILE
79
n
75
ILE
79
H
GLU
80
n
76
GLU
80
H
LYS
81
n
77
LYS
81
H
ILE
82
n
78
ILE
82
H
SER
83
n
79
SER
83
H
MET
84
n
80
MET
84
H
LEU
85
n
81
LEU
85
H
GLU
86
n
82
GLU
86
H
LYS
87
n
83
LYS
87
H
ILE
88
n
84
ILE
88
H
TYR
89
n
85
TYR
89
H
ILE
90
n
86
ILE
90
H
HIS
91
n
87
HIS
91
H
PRO
92
n
88
PRO
92
H
ARG
93
n
89
ARG
93
H
TYR
94
n
90
TYR
94
H
ASN
95
n
91
ASN
95
H
TRP
96
n
92
TRP
96
H
ARG
97
n
93
ARG
97
H
GLU
97
n
94
A
GLU
97
H
ASN
98
n
95
ASN
98
H
LEU
99
n
96
LEU
99
H
ASP
100
n
97
ASP
100
H
ARG
101
n
98
ARG
101
H
ASP
102
n
99
ASP
102
H
ILE
103
n
100
ILE
103
H
ALA
104
n
101
ALA
104
H
LEU
105
n
102
LEU
105
H
MET
106
n
103
MET
106
H
LYS
107
n
104
LYS
107
H
LEU
108
n
105
LEU
108
H
LYS
109
n
106
LYS
109
H
LYS
110
n
107
LYS
110
H
PRO
111
n
108
PRO
111
H
VAL
112
n
109
VAL
112
H
ALA
113
n
110
ALA
113
H
PHE
114
n
111
PHE
114
H
SER
115
n
112
SER
115
H
ASP
116
n
113
ASP
116
H
TYR
117
n
114
TYR
117
H
ILE
118
n
115
ILE
118
H
HIS
119
n
116
HIS
119
H
PRO
120
n
117
PRO
120
H
VAL
121
n
118
VAL
121
H
CYS
122
n
119
CYS
122
H
LEU
123
n
120
LEU
123
H
PRO
124
n
121
PRO
124
H
ASP
125
n
122
ASP
125
H
ARG
126
n
123
ARG
126
H
GLU
127
n
124
GLU
127
H
THR
128
n
125
THR
128
H
ALA
129
n
126
ALA
129
H
ALA
129
n
127
A
ALA
129
H
SER
129
n
128
B
SER
129
H
LEU
129
n
129
C
LEU
129
H
LEU
130
n
130
LEU
130
H
GLN
131
n
131
GLN
131
H
ALA
132
n
132
ALA
132
H
GLY
133
n
133
GLY
133
H
TYR
134
n
134
TYR
134
H
LYS
135
n
135
LYS
135
H
GLY
136
n
136
GLY
136
H
ARG
137
n
137
ARG
137
H
VAL
138
n
138
VAL
138
H
THR
139
n
139
THR
139
H
GLY
140
n
140
GLY
140
H
TRP
141
n
141
TRP
141
H
GLY
142
n
142
GLY
142
H
ASN
143
n
143
ASN
143
H
LEU
144
n
144
LEU
144
H
LYS
145
n
145
LYS
145
H
GLU
146
n
146
GLU
146
H
THR
147
n
147
THR
147
H
n
148
148
H
n
149
149
H
n
150
A
149
H
n
151
B
149
H
n
152
C
149
H
n
153
D
149
H
n
154
E
149
H
GLY
150
n
155
GLY
150
H
GLN
151
n
156
GLN
151
H
PRO
152
n
157
PRO
152
H
SER
153
n
158
SER
153
H
VAL
154
n
159
VAL
154
H
LEU
155
n
160
LEU
155
H
GLN
156
n
161
GLN
156
H
VAL
157
n
162
VAL
157
H
VAL
158
n
163
VAL
158
H
ASN
159
n
164
ASN
159
H
LEU
160
n
165
LEU
160
H
PRO
161
n
166
PRO
161
H
ILE
162
n
167
ILE
162
H
VAL
163
n
168
VAL
163
H
GLU
164
n
169
GLU
164
H
ARG
165
n
170
ARG
165
H
PRO
166
n
171
PRO
166
H
VAL
167
n
172
VAL
167
H
CYS
168
n
173
CYS
168
H
LYS
169
n
174
LYS
169
H
ASP
170
n
175
ASP
170
H
SER
171
n
176
SER
171
H
THR
172
n
177
THR
172
H
ARG
173
n
178
ARG
173
H
ILE
174
n
179
ILE
174
H
ARG
175
n
180
ARG
175
H
ILE
176
n
181
ILE
176
H
THR
177
n
182
THR
177
H
ASP
178
n
183
ASP
178
H
ASN
179
n
184
ASN
179
H
MET
180
n
185
MET
180
H
PHE
181
n
186
PHE
181
H
CYS
182
n
187
CYS
182
H
ALA
183
n
188
ALA
183
H
GLY
184
n
189
GLY
184
H
TYR
184
n
190
A
TYR
184
H
LYS
185
n
191
LYS
185
H
PRO
186
n
192
PRO
186
H
ASP
186
n
193
A
ASP
186
H
GLU
186
n
194
B
GLU
186
H
GLY
186
n
195
C
GLY
186
H
LYS
186
n
196
D
LYS
186
H
ARG
187
n
197
ARG
187
H
GLY
188
n
198
GLY
188
H
ASP
189
n
199
ASP
189
H
ALA
190
n
200
ALA
190
H
CYS
191
n
201
CYS
191
H
GLU
192
n
202
GLU
192
H
GLY
193
n
203
GLY
193
H
ASP
194
n
204
ASP
194
H
SER
195
n
205
SER
195
H
GLY
196
n
206
GLY
196
H
GLY
197
n
207
GLY
197
H
PRO
198
n
208
PRO
198
H
PHE
199
n
209
PHE
199
H
VAL
200
n
210
VAL
200
H
MET
201
n
211
MET
201
H
LYS
202
n
212
LYS
202
H
SER
203
n
213
SER
203
H
PRO
204
n
214
PRO
204
H
PHE
204
n
215
A
PHE
204
H
ASN
204
n
216
B
ASN
204
H
ASN
205
n
217
ASN
205
H
ARG
206
n
218
ARG
206
H
TRP
207
n
219
TRP
207
H
TYR
208
n
220
TYR
208
H
GLN
209
n
221
GLN
209
H
MET
210
n
222
MET
210
H
GLY
211
n
223
GLY
211
H
ILE
212
n
224
ILE
212
H
VAL
213
n
225
VAL
213
H
SER
214
n
226
SER
214
H
TRP
215
n
227
TRP
215
H
GLY
216
n
228
GLY
216
H
GLU
217
n
229
GLU
217
H
GLY
219
n
230
GLY
219
H
CYS
220
n
231
CYS
220
H
ASP
221
n
232
ASP
221
H
ARG
221
n
233
A
ARG
221
H
ASP
222
n
234
ASP
222
H
GLY
223
n
235
GLY
223
H
LYS
224
n
236
LYS
224
H
TYR
225
n
237
TYR
225
H
GLY
226
n
238
GLY
226
H
PHE
227
n
239
PHE
227
H
TYR
228
n
240
TYR
228
H
THR
229
n
241
THR
229
H
HIS
230
n
242
HIS
230
H
VAL
231
n
243
VAL
231
H
PHE
232
n
244
PHE
232
H
ARG
233
n
245
ARG
233
H
LEU
234
n
246
LEU
234
H
LYS
235
n
247
LYS
235
H
LYS
236
n
248
LYS
236
H
TRP
237
n
249
TRP
237
H
ILE
238
n
250
ILE
238
H
GLN
239
n
251
GLN
239
H
LYS
240
n
252
LYS
240
H
VAL
241
n
253
VAL
241
H
ILE
242
n
254
ILE
242
H
ASP
243
n
255
ASP
243
H
GLN
244
n
256
GLN
244
H
PHE
245
n
257
PHE
245
H
GLY
246
n
258
GLY
246
H
n
259
247
H
n
1
53
I
n
2
54
I
ASP
55
n
3
ASP
55
I
PHE
56
n
4
PHE
56
I
GLU
57
n
5
GLU
57
I
GLU
58
n
6
GLU
58
I
ILE
59
n
7
ILE
59
I
PRO
60
n
8
PRO
60
I
GLU
61
n
9
GLU
61
I
GLU
62
n
10
GLU
62
I
TYS
63
n
11
TYS
63
I
LEU
64
n
12
LEU
64
I
GLN
65
n
13
GLN
65
I
1.0600
-0.5830
0.3000
0.6535
0.0011
0.2047
0.2684
0.3506
-0.2652
-0.2646
-0.1926
0.1232
0.1278
-0.0093
-0.0773
0.1370
0.0677
-0.0345
0.1560
-0.0549
0.1109
refined
6.9684
-0.7629
12.7827
X-RAY DIFFRACTION
0.6641
-0.1501
0.1116
0.9898
-0.0057
0.0803
0.2216
0.4117
-0.0876
-0.4154
-0.2384
-0.0442
0.1141
0.1410
0.0087
0.1853
0.0999
0.0062
0.1867
0.0033
0.1089
refined
16.1661
3.4570
10.3938
X-RAY DIFFRACTION
1.5468
-0.8917
0.3686
1.2683
-0.1902
0.9528
0.1984
0.2266
-0.0267
-0.1203
-0.1719
-0.0309
0.0836
0.1331
-0.0213
0.0926
0.0500
-0.0067
0.1128
-0.0173
0.0658
refined
15.2169
-0.1152
16.8643
X-RAY DIFFRACTION
0.4566
-0.5800
0.1513
0.8418
-0.4405
0.6163
-0.0282
-0.0889
-0.2640
0.0790
0.0911
0.1686
0.1745
0.0258
-0.0407
0.1577
0.0116
0.0000
0.1135
0.0243
0.1523
refined
11.7649
-9.5667
32.0456
X-RAY DIFFRACTION
1.0812
-0.4019
0.0126
0.3089
-0.1387
0.6525
0.0481
-0.0727
-0.1144
0.0004
-0.0166
0.0215
0.0851
0.0252
-0.0187
0.0917
0.0252
0.0034
0.0855
-0.0033
0.0882
refined
12.0618
0.2253
26.8779
X-RAY DIFFRACTION
0.9904
1.4071
-0.5372
2.1707
-1.3869
2.9528
0.2650
0.1381
0.4843
0.0759
0.0499
-0.3086
-0.4388
0.4063
-0.2281
0.1962
-0.0156
0.0780
0.2189
0.0505
0.3651
refined
28.3323
11.1094
19.0834
X-RAY DIFFRACTION
1.3727
-0.1102
-0.1502
0.5689
-0.2328
0.1556
0.4426
1.0188
-0.1757
-0.7229
-0.2835
-0.1063
-0.0732
0.0728
-0.1798
0.5202
0.2400
0.0206
0.5924
-0.1079
0.1194
refined
12.0523
-0.5185
-3.4097
X-RAY DIFFRACTION
0.8240
-0.5018
-0.0810
0.3608
0.3280
1.4170
-0.0172
0.0336
0.4505
-0.0633
0.0186
-0.5265
-0.5202
-0.0108
0.0005
0.2069
0.0206
0.0046
0.1170
0.0156
0.2068
refined
9.6459
17.8651
19.7585
X-RAY DIFFRACTION
0.7777
-0.6926
-0.0122
0.9382
0.2282
0.2964
0.0736
-0.0666
0.0018
-0.0392
-0.1508
0.0684
-0.1499
-0.2065
0.0729
0.1347
0.0764
0.0005
0.1356
-0.0164
0.1201
refined
-2.025
10.068
24.865
X-RAY DIFFRACTION
0.2600
-0.0238
0.7009
0.3941
0.0053
2.0729
-0.0232
-0.2100
-0.0721
0.0458
0.0476
0.2284
0.0513
-0.3855
0.0273
0.1366
0.0320
0.0421
0.1755
0.0002
0.1610
refined
-2.889
10.476
25.491
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
(chain H and resid 16:37)
X-RAY DIFFRACTION
2
(chain H and resid 38:50)
X-RAY DIFFRACTION
3
(chain H and resid 51:168)
X-RAY DIFFRACTION
4
(chain H and resid 169:192)
X-RAY DIFFRACTION
5
(chain H and resid 193:236)
X-RAY DIFFRACTION
6
(chain H and resid 237:246)
X-RAY DIFFRACTION
7
(chain I and resid 55:65)
X-RAY DIFFRACTION
8
(chain L and resid 1C:3)
X-RAY DIFFRACTION
9
(chain L and resid 4:14)
X-RAY DIFFRACTION
10
(chain L and resid 14A:14K)
author_and_software_defined_assembly
PISA
3
trimeric
3390
-14
12900
G
H
ASN
60
GLYCOSYLATION SITE
B
ASN
53
ASN
I
TYS
63
O-SULFO-L-TYROSINE
C
TYS
11
TYR
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
H
N
SER
20
B
N
SER
5
H
O
VAL
157
B
O
VAL
162
H
O
VAL
158
B
O
VAL
163
H
N
VAL
138
B
N
VAL
138
H
N
ARG
137
B
N
ARG
137
H
O
VAL
200
B
O
VAL
210
H
N
MET
201
B
N
MET
211
H
O
TYR
208
B
O
TYR
220
H
N
TRP
215
B
N
TRP
227
H
O
PHE
227
B
O
PHE
239
H
O
TYR
228
B
O
TYR
240
H
N
PHE
181
B
N
PHE
186
H
N
LEU
33
B
N
LEU
18
H
O
LEU
41
B
O
LEU
27
H
N
SER
45
B
N
SER
31
H
O
LEU
53
B
O
LEU
39
H
N
THR
54
B
N
THR
40
H
O
ALA
104
B
O
ALA
101
H
O
LYS
107
B
O
LYS
104
H
N
GLU
86
B
N
GLU
82
H
O
LYS
81
B
O
LYS
77
H
N
ILE
68
B
N
ILE
63
H
O
LEU
65
B
O
LEU
60
H
N
PHE
34
B
N
PHE
19
A
H
N
TYR
60
B
N
TYR
47
F
H
O
LYS
60
B
O
LYS
52
1
H
ARG
75
B
ARG
70
1
H
HOH
1081
L
HOH
1
H
HOH
1101
L
HOH
C
1
L
CG
GLU
1
A
CG
GLU
6
1
Y
C
1
L
CD
GLU
1
A
CD
GLU
6
1
Y
C
1
L
OE1
GLU
1
A
OE1
GLU
6
1
Y
C
1
L
OE2
GLU
1
A
OE2
GLU
6
1
Y
A
1
H
OG
SER
36
B
OG
SER
22
1
Y
A
1
H
CG
ASP
186
B
CG
ASP
193
1
Y
A
1
H
OD1
ASP
186
B
OD1
ASP
193
1
Y
A
1
H
OD2
ASP
186
B
OD2
ASP
193
1
Y
1
H
CG
LYS
236
B
CG
LYS
248
1
Y
1
H
CD
LYS
236
B
CD
LYS
248
1
Y
1
H
CE
LYS
236
B
CE
LYS
248
1
Y
1
H
NZ
LYS
236
B
NZ
LYS
248
1
Y
1
H
CG
LYS
240
B
CG
LYS
252
1
Y
1
H
CD
LYS
240
B
CD
LYS
252
1
Y
1
H
CE
LYS
240
B
CE
LYS
252
1
Y
1
H
NZ
LYS
240
B
NZ
LYS
252
1
Y
1
I
CG
GLU
58
C
CG
GLU
6
1
Y
1
I
CD
GLU
58
C
CD
GLU
6
1
Y
1
I
OE1
GLU
58
C
OE1
GLU
6
1
Y
1
I
OE2
GLU
58
C
OE2
GLU
6
1
Y
1
I
CG
GLN
65
C
CG
GLN
13
1
Y
1
I
CD
GLN
65
C
CD
GLN
13
1
Y
1
I
OE1
GLN
65
C
OE1
GLN
13
1
Y
1
I
NE2
GLN
65
C
NE2
GLN
13
1
Y
H
1
L
THR
1
A
THR
1
1
Y
G
1
L
PHE
1
A
PHE
2
1
Y
F
1
L
GLY
1
A
GLY
3
1
Y
E
1
L
SER
1
A
SER
4
1
Y
D
1
L
GLY
1
A
GLY
5
1
Y
L
1
L
ASP
14
A
ASP
34
1
Y
M
1
L
GLY
14
A
GLY
35
1
Y
1
L
ARG
15
A
ARG
36
1
Y
1
H
TRP
148
B
TRP
148
1
Y
1
H
THR
149
B
THR
149
1
Y
A
1
H
ALA
149
B
ALA
150
1
Y
B
1
H
ASN
149
B
ASN
151
1
Y
C
1
H
VAL
149
B
VAL
152
1
Y
D
1
H
GLY
149
B
GLY
153
1
Y
E
1
H
LYS
149
B
LYS
154
1
Y
1
H
GLU
247
B
GLU
259
1
Y
1
I
ASN
53
C
ASN
1
1
Y
1
I
GLY
54
C
GLY
2
1
Y
1
L
PHE
7
-130.20
-90.36
A
1
H
TYR
60
-152.65
82.69
G
1
H
ASN
60
-156.39
81.96
1
H
HIS
71
-131.16
-63.36
1
H
ILE
79
-125.96
-61.06
A
1
H
GLU
97
-112.34
-73.22
1
H
SER
195
-37.45
135.78
88.420
23.2358
7.380
3.5554
0.0000
-3.1404
-3.5521
0.0000
-0.0033
0.1786
0.1547
0.1559
0.1559
1.580
49.497
2302
48261
45959
5.01
95.53
1.000
0.260
0.9039
0.15
Random
1
Free R
0.00
MOLECULAR REPLACEMENT
16.7200
0.83
1.10
1H8D
ML
FLAT BULK SOLVENT MODEL
44.217
0.369
1.580
49.497
305
2711
66
0
2340
0.009
2559
1.081
3479
0.073
361
0.005
440
16.736
1020
0.2453
0.2009
1.6365
191
3987
4178
10
88.0000
0.2441
0.1871
1.7020
232
4086
4318
10
90.0000
0.1914
0.1637
1.7795
201
4237
4438
10
92.0000
0.1740
0.1516
1.8733
213
4310
4523
10
95.0000
0.1733
0.1435
1.9907
257
4344
4601
10
96.0000
0.1726
0.1486
2.1444
226
4476
4702
10
98.0000
0.1763
0.1490
2.3602
236
4516
4752
10
99.0000
0.1947
0.1636
2.7017
257
4496
4753
10
99.0000
0.1726
0.1581
3.4037
252
4554
4806
10
100.0000
0.1617
0.1452
49.5213
237
4651
4888
10
100.0000
14.200
1.58
50
3RMM
48248
48248
0.058
1
22.9
3.8
99.8
1.58
1.61
3.0
2403
0.478
1
3.7
99.6
data collection
MAR345dtb
phasing
PHASER
refinement
PHENIX
(phenix.refine: 1.6.4_486)
data reduction
HKL-2000
data scaling
HKL-2000
Human Thrombin in complex with MI332
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
6
N
N
7
N
N
8
N
N
8
N
N
9
N
N
9
N
N
9
N
N
L
PHE
7
A
PHE
15
HELX_P
L
SER
11
A
SER
19
5
1
5
L
THR
14
A
THR
24
HELX_P
L
TYR
14
A
TYR
32
1
2
9
B
J
H
ALA
55
B
ALA
41
HELX_P
H
CYS
58
B
CYS
44
5
3
4
H
PRO
60
B
PRO
48
HELX_P
H
ASP
60
B
ASP
51
5
4
4
B
E
H
THR
60
B
THR
55
HELX_P
H
ASN
62
B
ASN
57
5
5
3
I
H
ASP
125
B
ASP
122
HELX_P
H
LEU
130
B
LEU
130
1
6
9
H
GLU
164
B
GLU
169
HELX_P
H
SER
171
B
SER
176
1
7
8
H
LYS
185
B
LYS
191
HELX_P
H
GLY
186
B
GLY
195
5
8
5
C
H
LEU
234
B
LEU
246
HELX_P
H
GLY
246
B
GLY
258
1
9
13
I
PRO
60
C
PRO
8
HELX_P
I
LEU
64
C
LEU
12
5
10
5
disulf
2.052
L
CYS
1
A
SG
CYS
9
1_555
H
CYS
122
B
SG
CYS
119
1_555
disulf
2.056
H
CYS
42
B
SG
CYS
28
1_555
H
CYS
58
B
SG
CYS
44
1_555
disulf
2.039
H
CYS
168
B
SG
CYS
173
1_555
H
CYS
182
B
SG
CYS
187
1_555
disulf
2.041
H
CYS
191
B
SG
CYS
201
1_555
H
CYS
220
B
SG
CYS
231
1_555
covale
1.428
one
G
G
N-Glycosylation
H
ASN
60
B
ND2
ASN
53
1_555
H
NAG
260
D
C1
NAG
1_555
covale
1.331
both
I
GLU
62
C
C
GLU
10
1_555
I
TYS
63
C
N
TYS
11
1_555
covale
1.328
both
I
TYS
63
C
C
TYS
11
1_555
I
LEU
64
C
N
LEU
12
1_555
HYDROLASE/HYDROLASE INHIBITOR
Serine Protease, Kringle, Hydrolase, Blood Coagulation, Blood Clotting, Convertion of Fibrinogen to Fibrin, Hirudin, Glycosylation, Blood, HYDROLASE-HYDROLASE INHIBITOR complex
H
SER
36
B
SER
22
A
1
H
PRO
37
B
PRO
23
-2.04
THRB_HUMAN
UNP
1
328
P00734
TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR
THRB_HUMAN
UNP
2
364
P00734
IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM
LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL
QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY
THVFRLKKWIQKVIDQFGE
HIRV2_HIRME
UNP
3
60
P09945
NGDFEEIPEEYLQ
328
363
3RMM
1
15
P00734
H
L
1
1
36
364
622
3RMM
16
247
P00734
H
2
1
259
60
72
3RMM
53
65
P09945
I
3
1
13
7
7
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
H
SER
20
B
SER
5
H
ASP
21
B
ASP
6
H
GLN
156
B
GLN
161
H
PRO
161
B
PRO
166
H
LYS
135
B
LYS
135
H
GLY
140
B
GLY
140
H
PRO
198
B
PRO
208
H
LYS
202
B
LYS
212
H
TRP
207
B
TRP
219
H
TRP
215
B
TRP
227
H
GLY
226
B
GLY
238
H
HIS
230
B
HIS
242
H
MET
180
B
MET
185
H
ALA
183
B
ALA
188
H
GLN
30
B
GLN
15
H
ARG
35
B
ARG
20
H
GLU
39
B
GLU
25
H
LEU
46
B
LEU
32
H
TRP
51
B
TRP
37
H
THR
54
B
THR
40
H
ALA
104
B
ALA
101
H
LEU
108
B
LEU
105
H
LYS
81
B
LYS
77
H
ILE
90
B
ILE
86
H
LEU
64
B
LEU
59
H
ILE
68
B
ILE
63
H
GLN
30
B
GLN
15
H
ARG
35
B
ARG
20
H
LEU
60
B
LEU
46
H
TYR
60
B
TYR
47
A
H
LYS
60
B
LYS
52
H
ASN
60
B
ASN
53
F
G
5
C 1 2 1