0.014306 0.000000 0.002677 0.000000 0.014065 0.000000 0.000000 0.000000 0.013956 0.00000 0.00000 0.00000 Biela, A. Heine, A. Klebe, G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 100.60 90.00 69.900 71.100 72.900 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C25 H33 Cl N4 O4 S 521.072 N-(benzylsulfonyl)-D-valyl-N-[2-(aminomethyl)-5-chlorobenzyl]-L-prolinamide peptide-like C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Na 1 22.990 SODIUM ION non-polymer C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE D-saccharide, beta linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking O4 P -3 94.971 PHOSPHATE ION non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C9 H11 N O6 S 261.252 n O-SULFO-L-TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N C N 138 N O N 139 N C N 140 N O N 141 N C N 142 N O N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N N N 152 S C N 153 N C N 154 N O N 155 N C Y 156 N C Y 157 N N Y 158 N C Y 159 N C Y 160 N N N 161 N O N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N O N 173 N H N 174 N H N 175 N N N 176 S C N 177 N C N 178 N O N 179 S C N 180 N C N 181 N C N 182 N C N 183 N O N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N N N 198 S C N 199 N C N 200 N O N 201 N C N 202 N C N 203 N C N 204 N C N 205 N O N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N N N 220 S C N 221 N C N 222 N O N 223 N C N 224 N C N 225 N C N 226 N C N 227 N N N 228 N O N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N C N 245 N S Y 246 N C Y 247 N C Y 248 N C Y 249 N C Y 250 N C Y 251 N C N 252 N O N 253 N O N 254 N N N 255 R C N 256 N C N 257 N C N 258 N C N 259 N C N 260 N O N 261 N N N 262 S C N 263 N C N 264 N O N 265 N C N 266 N C N 267 N C N 268 N N N 269 N C Y 270 N C Y 271 N C N 272 N C N 273 N N Y 274 N C Y 275 N C Y 276 N C N 277 N CL Y 278 N C N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N N N 313 S C N 314 N C N 315 N O N 316 N C N 317 N C N 318 N S N 319 N C N 320 N O N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N NA N 333 R C N 334 R C N 335 R C N 336 S C N 337 R C N 338 N C N 339 N C N 340 N C N 341 N N N 342 N O N 343 N O N 344 N O N 345 N O N 346 N O N 347 N O N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N N N 364 S C N 365 N C N 366 N O N 367 N C Y 368 N C Y 369 N C Y 370 N C Y 371 N C Y 372 N C Y 373 N C N 374 N O N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N P N 387 N O N 388 N O N 389 N O N 390 N O N 391 N N N 392 S C N 393 N C N 394 N O N 395 N C N 396 N C N 397 N C N 398 N O N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N N N 409 S C N 410 N C N 411 N O N 412 N C N 413 N O N 414 N O N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N N N 423 S C N 424 N C N 425 N O N 426 R C N 427 N O N 428 N C N 429 N O N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N N N 440 S C N 441 N C N 442 N O N 443 N C Y 444 N C Y 445 N C Y 446 N C Y 447 N N Y 448 N C Y 449 N C Y 450 N C Y 451 N C Y 452 N C N 453 N O N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N N N 467 S C N 468 N C N 469 N O N 470 N C Y 471 N C Y 472 N C Y 473 N C Y 474 N C Y 475 N C Y 476 N C N 477 N O N 478 N O N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N H N 489 N H N 490 N N N 491 S C N 492 N C Y 493 N C Y 494 N C Y 495 N C Y 496 N C Y 497 N C Y 498 N C N 499 N O N 500 N S N 501 N O N 502 N O N 503 N O N 504 N C N 505 N O N 506 N O N 507 N H N 508 N H N 509 N H N 510 N H N 511 N H N 512 N H N 513 N H N 514 N H N 515 N H N 516 N H N 517 N H N 518 N N N 519 S C N 520 N C N 521 N O N 522 N C N 523 N C N 524 N C N 525 N O N 526 N H N 527 N H N 528 N H N 529 N H N 530 N H N 531 N H N 532 N H N 533 N H N 534 N H N 535 N H N 536 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing Y 153 N sing Y 154 N doub Y 155 N doub N 156 N sing Y 157 N sing N 158 N sing Y 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N doub N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N doub N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing Y 231 N doub Y 232 N sing Y 233 N sing N 234 N sing Y 235 N sing N 236 N sing Y 237 N doub Y 238 N doub N 239 N sing N 240 N sing N 241 N doub N 242 N doub N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N doub N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N doub N 258 N sing N 259 N sing Y 260 N doub Y 261 N sing Y 262 N sing N 263 N sing Y 264 N doub Y 265 N sing Y 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N doub N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N doub N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N doub N 357 N sing N 358 N sing N 359 N sing N 360 N sing Y 361 N doub Y 362 N sing Y 363 N sing N 364 N sing Y 365 N doub N 366 N sing Y 367 N doub N 368 N sing Y 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N doub N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N doub N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N doub N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N doub N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N doub N 430 N sing N 431 N sing N 432 N sing N 433 N sing Y 434 N doub Y 435 N sing Y 436 N sing N 437 N sing Y 438 N doub Y 439 N sing Y 440 N sing N 441 N sing Y 442 N sing Y 443 N doub N 444 N sing Y 445 N doub N 446 N sing Y 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N doub N 458 N sing N 459 N sing N 460 N sing N 461 N sing Y 462 N doub Y 463 N sing Y 464 N sing N 465 N sing Y 466 N doub N 467 N sing Y 468 N doub N 469 N sing Y 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing Y 484 N doub Y 485 N sing Y 486 N sing N 487 N sing Y 488 N doub N 489 N sing Y 490 N doub N 491 N sing Y 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N doub N 497 N doub N 498 N sing N 499 N sing N 500 N doub N 501 N sing N 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing N 509 N doub N 510 N sing N 511 N sing N 512 N sing N 513 N sing N 514 N sing N 515 N sing N 516 N sing N 517 N sing N 518 N sing N 519 N sing N 520 N sing US J.Med.Chem. JMCMAR 0151 0022-2623 55 6094 6110 10.1021/jm300337q 22612268 Ligand binding stepwise disrupts water network in thrombin: enthalpic and entropic changes reveal classical hydrophobic effect 2012 10.2210/pdb3rmn/pdb pdb_00003rmn 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 Collimating mirror CCD 2009-12-12 RAYONIX MX-225 Double Crystal Monochromator SINGLE WAVELENGTH M x-ray 1 0.91841 1.0 14.2 BESSY 0.91841 SYNCHROTRON BESSY BEAMLINE 14.2 4096.534 Thrombin Light Chain 3.4.21.5 1 nat polymer 29780.219 Thrombin Heavy Chain 3.4.21.5 1 nat polymer 1662.683 Hirudin variant-2 residues in UNP 60-72 1 syn polymer 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose 1 man non-polymer 521.072 N-(benzylsulfonyl)-D-valyl-N-[2-(aminomethyl)-5-chlorobenzyl]-L-prolinamide 1 syn non-polymer 94.971 PHOSPHATE ION 1 syn non-polymer 92.094 GLYCEROL 2 syn non-polymer 22.990 SODIUM ION 2 syn non-polymer 18.015 water 314 nat water no no TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR L polypeptide(L) no no IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE H polypeptide(L) no yes NGDFEEIPEE(TYS)LQ NGDFEEIPEEYLQ I polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Human sample 9606 Homo sapiens Human sample 9606 Homo sapiens 1 2.51 50.90 VAPOR DIFFUSION, HANGING DROP 7.5 15% PEG 8000, 20mM sodium phosphate, 175mM sodium chloride, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277.15K 277.15 chem_comp entity pdbx_chem_comp_identifier pdbx_entity_nonpoly pdbx_struct_special_symmetry struct_conn struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model chem_comp_atom chem_comp_bond repository Initial release Carbohydrate remediation repository Remediation Other Database references Data collection Derived calculations Structure summary Data collection Database references Refinement description Structure summary Data collection 1 0 2012-04-25 1 1 2012-12-12 1 2 2016-07-13 1 3 2020-07-29 1 4 2023-11-01 1 5 2023-12-06 _chem_comp.name _chem_comp.type _entity.pdbx_description _pdbx_entity_nonpoly.name _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_role _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession _chem_comp_atom.atom_id _chem_comp_bond.atom_id_2 DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc RCSB Y PDBJ 2011-04-21 REL REL NAG 2-acetamido-2-deoxy-beta-D-glucopyranose M41 N-(benzylsulfonyl)-D-valyl-N-[2-(aminomethyl)-5-chlorobenzyl]-L-prolinamide PO4 PHOSPHATE ION GOL GLYCEROL NA SODIUM ION HOH water Synthetic Fragment of Hirudin from Hirudo Medicinalis 6421 Medicinal leech Hirudo medicinalis sample 1H8D PDB experimental model Thrombin inhibitor N-(BENZYLSULFONYL)-D-VALYL-N-[2-(AMINOMETHYL)-5-CHLOROBENZYL]-L-PROLINAMIDE Peptide-like NAG 260 4 NAG G NAG 260 H M41 1 5 M41 M41 1 H PO4 2 6 PO4 PO4 2 H GOL 3 7 GOL GOL 3 H GOL 4 7 GOL GOL 4 H NA 5 8 NA NA 5 H NA 6 8 NA NA 6 H HOH 1001 9 HOH HOH 1001 L HOH 1002 9 HOH HOH 1002 L HOH 1003 9 HOH HOH 1003 L HOH 1004 9 HOH HOH 1004 L HOH 1005 9 HOH HOH 1005 L HOH 1006 9 HOH HOH 1006 L HOH 1007 9 HOH HOH 1007 L HOH 1008 9 HOH HOH 1008 L HOH 1009 9 HOH HOH 1009 L HOH 1010 9 HOH HOH 1010 L HOH 1011 9 HOH HOH 1011 L HOH 1012 9 HOH HOH 1012 L HOH 1013 9 HOH HOH 1013 L HOH 1014 9 HOH HOH 1014 L HOH 1015 9 HOH HOH 1015 L HOH 1016 9 HOH HOH 1016 L HOH 1017 9 HOH HOH 1017 L HOH 1018 9 HOH HOH 1018 L HOH 1019 9 HOH HOH 1019 L HOH 1020 9 HOH HOH 1020 L HOH 1021 9 HOH HOH 1021 L HOH 1022 9 HOH HOH 1022 L HOH 1023 9 HOH HOH 1023 L HOH 1024 9 HOH HOH 1024 L HOH 1025 9 HOH HOH 1025 L HOH 1026 9 HOH HOH 1026 L HOH 1027 9 HOH HOH 1027 L HOH 1028 9 HOH HOH 1028 L HOH 1029 9 HOH HOH 1029 L HOH 1030 9 HOH HOH 1030 L HOH 1031 9 HOH HOH 1031 L HOH 1032 9 HOH HOH 1032 L HOH 1033 9 HOH HOH 1033 L HOH 1034 9 HOH HOH 1034 L HOH 1035 9 HOH HOH 1035 L HOH 1036 9 HOH HOH 1036 L HOH 1037 9 HOH HOH 1037 L HOH 1038 9 HOH HOH 1038 L HOH 1039 9 HOH HOH 1039 L HOH 1040 9 HOH HOH 1040 L HOH 1041 9 HOH HOH 1041 L HOH 1042 9 HOH HOH 1042 L HOH 1043 9 HOH HOH 1043 H HOH 1044 9 HOH HOH 1044 H HOH 1045 9 HOH HOH 1045 H HOH 1046 9 HOH HOH 1046 H HOH 1047 9 HOH HOH 1047 H HOH 1048 9 HOH HOH 1048 H HOH 1049 9 HOH HOH 1049 H HOH 1050 9 HOH HOH 1050 H HOH 1051 9 HOH HOH 1051 H HOH 1052 9 HOH HOH 1052 H HOH 1053 9 HOH HOH 1053 H HOH 1054 9 HOH HOH 1054 H HOH 1055 9 HOH HOH 1055 H HOH 1056 9 HOH HOH 1056 H HOH 1057 9 HOH HOH 1057 H HOH 1058 9 HOH HOH 1058 H HOH 1059 9 HOH HOH 1059 H HOH 1060 9 HOH HOH 1060 H HOH 1061 9 HOH HOH 1061 H HOH 1062 9 HOH HOH 1062 H HOH 1063 9 HOH HOH 1063 H HOH 1064 9 HOH HOH 1064 H HOH 1065 9 HOH HOH 1065 H HOH 1066 9 HOH HOH 1066 H HOH 1067 9 HOH HOH 1067 H HOH 1068 9 HOH HOH 1068 H HOH 1069 9 HOH HOH 1069 H HOH 1070 9 HOH HOH 1070 H HOH 1071 9 HOH HOH 1071 H HOH 1072 9 HOH HOH 1072 H HOH 1073 9 HOH HOH 1073 H HOH 1074 9 HOH HOH 1074 H HOH 1075 9 HOH HOH 1075 H HOH 1076 9 HOH HOH 1076 H HOH 1077 9 HOH HOH 1077 H HOH 1078 9 HOH HOH 1078 H HOH 1079 9 HOH HOH 1079 H HOH 1080 9 HOH HOH 1080 H HOH 1081 9 HOH HOH 1081 H HOH 1082 9 HOH HOH 1082 H HOH 1083 9 HOH HOH 1083 H HOH 1084 9 HOH HOH 1084 H HOH 1085 9 HOH HOH 1085 H HOH 1086 9 HOH HOH 1086 H HOH 1087 9 HOH HOH 1087 H HOH 1088 9 HOH HOH 1088 H HOH 1089 9 HOH HOH 1089 H HOH 1090 9 HOH HOH 1090 H HOH 1091 9 HOH HOH 1091 H HOH 1092 9 HOH HOH 1092 H HOH 1093 9 HOH HOH 1093 H HOH 1094 9 HOH HOH 1094 H HOH 1095 9 HOH HOH 1095 H HOH 1096 9 HOH HOH 1096 H HOH 1097 9 HOH HOH 1097 H HOH 1098 9 HOH HOH 1098 H HOH 1099 9 HOH HOH 1099 H HOH 1100 9 HOH HOH 1100 H HOH 1101 9 HOH HOH 1101 H HOH 1102 9 HOH HOH 1102 H HOH 1103 9 HOH HOH 1103 H HOH 1104 9 HOH HOH 1104 H HOH 1105 9 HOH HOH 1105 H HOH 1106 9 HOH HOH 1106 H HOH 1107 9 HOH HOH 1107 H HOH 1108 9 HOH HOH 1108 H HOH 1109 9 HOH HOH 1109 H HOH 1110 9 HOH HOH 1110 H HOH 1111 9 HOH HOH 1111 H HOH 1112 9 HOH HOH 1112 H HOH 1113 9 HOH HOH 1113 H HOH 1114 9 HOH HOH 1114 H HOH 1115 9 HOH HOH 1115 H HOH 1116 9 HOH HOH 1116 H HOH 1117 9 HOH HOH 1117 H HOH 1118 9 HOH HOH 1118 H HOH 1119 9 HOH HOH 1119 H HOH 1120 9 HOH HOH 1120 H HOH 1121 9 HOH HOH 1121 H HOH 1122 9 HOH HOH 1122 H HOH 1123 9 HOH HOH 1123 H HOH 1124 9 HOH HOH 1124 H HOH 1125 9 HOH HOH 1125 H HOH 1126 9 HOH HOH 1126 H HOH 1127 9 HOH HOH 1127 H HOH 1128 9 HOH HOH 1128 H HOH 1129 9 HOH HOH 1129 H HOH 1130 9 HOH HOH 1130 H HOH 1131 9 HOH HOH 1131 H HOH 1132 9 HOH HOH 1132 H HOH 1133 9 HOH HOH 1133 H HOH 1134 9 HOH HOH 1134 H HOH 1135 9 HOH HOH 1135 H HOH 1136 9 HOH HOH 1136 H HOH 1137 9 HOH HOH 1137 H HOH 1138 9 HOH HOH 1138 H HOH 1139 9 HOH HOH 1139 H HOH 1140 9 HOH HOH 1140 H HOH 1141 9 HOH HOH 1141 H HOH 1142 9 HOH HOH 1142 H HOH 1143 9 HOH HOH 1143 H HOH 1144 9 HOH HOH 1144 H HOH 1145 9 HOH HOH 1145 H HOH 1146 9 HOH HOH 1146 H HOH 1147 9 HOH HOH 1147 H HOH 1148 9 HOH HOH 1148 H HOH 1149 9 HOH HOH 1149 H HOH 1150 9 HOH HOH 1150 H HOH 1151 9 HOH HOH 1151 H HOH 1152 9 HOH HOH 1152 H HOH 1153 9 HOH HOH 1153 H HOH 1154 9 HOH HOH 1154 H HOH 1155 9 HOH HOH 1155 H HOH 1156 9 HOH HOH 1156 H HOH 1157 9 HOH HOH 1157 H HOH 1158 9 HOH HOH 1158 H HOH 1159 9 HOH HOH 1159 H HOH 1160 9 HOH HOH 1160 H HOH 1161 9 HOH HOH 1161 H HOH 1162 9 HOH HOH 1162 H HOH 1163 9 HOH HOH 1163 H HOH 1164 9 HOH HOH 1164 H HOH 1165 9 HOH HOH 1165 H HOH 1166 9 HOH HOH 1166 H HOH 1167 9 HOH HOH 1167 H HOH 1168 9 HOH HOH 1168 H HOH 1169 9 HOH HOH 1169 H HOH 1170 9 HOH HOH 1170 H HOH 1171 9 HOH HOH 1171 H HOH 1172 9 HOH HOH 1172 H HOH 1173 9 HOH HOH 1173 H HOH 1174 9 HOH HOH 1174 H HOH 1175 9 HOH HOH 1175 H HOH 1176 9 HOH HOH 1176 H HOH 1177 9 HOH HOH 1177 H HOH 1178 9 HOH HOH 1178 H HOH 1179 9 HOH HOH 1179 H HOH 1180 9 HOH HOH 1180 H HOH 1181 9 HOH HOH 1181 H HOH 1182 9 HOH HOH 1182 H HOH 1183 9 HOH HOH 1183 H HOH 1184 9 HOH HOH 1184 H HOH 1185 9 HOH HOH 1185 H HOH 1186 9 HOH HOH 1186 H HOH 1187 9 HOH HOH 1187 H HOH 1188 9 HOH HOH 1188 H HOH 1189 9 HOH HOH 1189 H HOH 1190 9 HOH HOH 1190 H HOH 1191 9 HOH HOH 1191 H HOH 1192 9 HOH HOH 1192 H HOH 1193 9 HOH HOH 1193 H HOH 1194 9 HOH HOH 1194 H HOH 1195 9 HOH HOH 1195 H HOH 1196 9 HOH HOH 1196 H HOH 1197 9 HOH HOH 1197 H HOH 1198 9 HOH HOH 1198 H HOH 1199 9 HOH HOH 1199 H HOH 1200 9 HOH HOH 1200 H HOH 1201 9 HOH HOH 1201 H HOH 1202 9 HOH HOH 1202 H HOH 1203 9 HOH HOH 1203 H HOH 1204 9 HOH HOH 1204 H HOH 1205 9 HOH HOH 1205 H HOH 1206 9 HOH HOH 1206 H HOH 1207 9 HOH HOH 1207 H HOH 1208 9 HOH HOH 1208 H HOH 1209 9 HOH HOH 1209 H HOH 1210 9 HOH HOH 1210 H HOH 1211 9 HOH HOH 1211 H HOH 1212 9 HOH HOH 1212 H HOH 1213 9 HOH HOH 1213 H HOH 1214 9 HOH HOH 1214 H HOH 1215 9 HOH HOH 1215 H HOH 1216 9 HOH HOH 1216 H HOH 1217 9 HOH HOH 1217 H HOH 1218 9 HOH HOH 1218 H HOH 1219 9 HOH HOH 1219 H HOH 1220 9 HOH HOH 1220 H HOH 1221 9 HOH HOH 1221 H HOH 1222 9 HOH HOH 1222 H HOH 1223 9 HOH HOH 1223 H HOH 1224 9 HOH HOH 1224 H HOH 1225 9 HOH HOH 1225 H HOH 1226 9 HOH HOH 1226 H HOH 1227 9 HOH HOH 1227 H HOH 1228 9 HOH HOH 1228 H HOH 1229 9 HOH HOH 1229 H HOH 1230 9 HOH HOH 1230 H HOH 1231 9 HOH HOH 1231 H HOH 1232 9 HOH HOH 1232 H HOH 1233 9 HOH HOH 1233 H HOH 1234 9 HOH HOH 1234 H HOH 1235 9 HOH HOH 1235 H HOH 1236 9 HOH HOH 1236 H HOH 1237 9 HOH HOH 1237 H HOH 1238 9 HOH HOH 1238 H HOH 1239 9 HOH HOH 1239 H HOH 1240 9 HOH HOH 1240 H HOH 1241 9 HOH HOH 1241 H HOH 1242 9 HOH HOH 1242 H HOH 1243 9 HOH HOH 1243 H HOH 1244 9 HOH HOH 1244 H HOH 1245 9 HOH HOH 1245 H HOH 1246 9 HOH HOH 1246 H HOH 1247 9 HOH HOH 1247 H HOH 1248 9 HOH HOH 1248 H HOH 1249 9 HOH HOH 1249 H HOH 1250 9 HOH HOH 1250 H HOH 1251 9 HOH HOH 1251 H HOH 1252 9 HOH HOH 1252 H HOH 1253 9 HOH HOH 1253 H HOH 1254 9 HOH HOH 1254 H HOH 1255 9 HOH HOH 1255 H HOH 1256 9 HOH HOH 1256 H HOH 1257 9 HOH HOH 1257 H HOH 1258 9 HOH HOH 1258 H HOH 1259 9 HOH HOH 1259 H HOH 1260 9 HOH HOH 1260 H HOH 1261 9 HOH HOH 1261 H HOH 1262 9 HOH HOH 1262 H HOH 1263 9 HOH HOH 1263 H HOH 1264 9 HOH HOH 1264 H HOH 1265 9 HOH HOH 1265 H HOH 1266 9 HOH HOH 1266 H HOH 1267 9 HOH HOH 1267 H HOH 1268 9 HOH HOH 1268 H HOH 1269 9 HOH HOH 1269 H HOH 1270 9 HOH HOH 1270 H HOH 1271 9 HOH HOH 1271 H HOH 1272 9 HOH HOH 1272 H HOH 1273 9 HOH HOH 1273 H HOH 1274 9 HOH HOH 1274 H HOH 1275 9 HOH HOH 1275 H HOH 1276 9 HOH HOH 1276 H HOH 1277 9 HOH HOH 1277 H HOH 1278 9 HOH HOH 1278 H HOH 1279 9 HOH HOH 1279 H HOH 1280 9 HOH HOH 1280 H HOH 1281 9 HOH HOH 1281 H HOH 1282 9 HOH HOH 1282 H HOH 1283 9 HOH HOH 1283 H HOH 1284 9 HOH HOH 1284 H HOH 1285 9 HOH HOH 1285 H HOH 1286 9 HOH HOH 1286 H HOH 1287 9 HOH HOH 1287 H HOH 1288 9 HOH HOH 1288 H HOH 1289 9 HOH HOH 1289 H HOH 1290 9 HOH HOH 1290 H HOH 1291 9 HOH HOH 1291 H HOH 1292 9 HOH HOH 1292 H HOH 1293 9 HOH HOH 1293 H HOH 1294 9 HOH HOH 1294 H HOH 1295 9 HOH HOH 1295 H HOH 1296 9 HOH HOH 1296 H HOH 1297 9 HOH HOH 1297 H HOH 1298 9 HOH HOH 1298 H HOH 1299 9 HOH HOH 1299 H HOH 1300 9 HOH HOH 1300 H HOH 1301 9 HOH HOH 1301 H HOH 1302 9 HOH HOH 1302 H HOH 1303 9 HOH HOH 1303 H HOH 1304 9 HOH HOH 1304 H HOH 1305 9 HOH HOH 1305 H HOH 1306 9 HOH HOH 1306 H HOH 1307 9 HOH HOH 1307 H HOH 1308 9 HOH HOH 1308 H HOH 1309 9 HOH HOH 1309 H HOH 1310 9 HOH HOH 1310 I HOH 1311 9 HOH HOH 1311 I HOH 1312 9 HOH HOH 1312 I HOH 1313 9 HOH HOH 1313 I HOH 1314 9 HOH HOH 1314 I n 1 H 1 L n 2 G 1 L n 3 F 1 L n 4 E 1 L n 5 D 1 L GLU 1 n 6 C GLU 1 L ALA 1 n 7 B ALA 1 L ASP 1 n 8 A ASP 1 L CYS 1 n 9 CYS 1 L GLY 2 n 10 GLY 2 L LEU 3 n 11 LEU 3 L ARG 4 n 12 ARG 4 L PRO 5 n 13 PRO 5 L LEU 6 n 14 LEU 6 L PHE 7 n 15 PHE 7 L GLU 8 n 16 GLU 8 L LYS 9 n 17 LYS 9 L LYS 10 n 18 LYS 10 L SER 11 n 19 SER 11 L LEU 12 n 20 LEU 12 L GLU 13 n 21 GLU 13 L ASP 14 n 22 ASP 14 L LYS 14 n 23 A LYS 14 L THR 14 n 24 B THR 14 L GLU 14 n 25 C GLU 14 L ARG 14 n 26 D ARG 14 L GLU 14 n 27 E GLU 14 L LEU 14 n 28 F LEU 14 L LEU 14 n 29 G LEU 14 L GLU 14 n 30 H GLU 14 L SER 14 n 31 I SER 14 L TYR 14 n 32 J TYR 14 L ILE 14 n 33 K ILE 14 L n 34 L 14 L n 35 M 14 L n 36 15 L ILE 16 n 1 ILE 16 H VAL 17 n 2 VAL 17 H GLU 18 n 3 GLU 18 H GLY 19 n 4 GLY 19 H SER 20 n 5 SER 20 H ASP 21 n 6 ASP 21 H ALA 22 n 7 ALA 22 H GLU 23 n 8 GLU 23 H ILE 24 n 9 ILE 24 H GLY 25 n 10 GLY 25 H MET 26 n 11 MET 26 H SER 27 n 12 SER 27 H PRO 28 n 13 PRO 28 H TRP 29 n 14 TRP 29 H GLN 30 n 15 GLN 30 H VAL 31 n 16 VAL 31 H MET 32 n 17 MET 32 H LEU 33 n 18 LEU 33 H PHE 34 n 19 PHE 34 H ARG 35 n 20 ARG 35 H LYS 36 n 21 LYS 36 H SER 36 n 22 A SER 36 H PRO 37 n 23 PRO 37 H GLN 38 n 24 GLN 38 H GLU 39 n 25 GLU 39 H LEU 40 n 26 LEU 40 H LEU 41 n 27 LEU 41 H CYS 42 n 28 CYS 42 H GLY 43 n 29 GLY 43 H ALA 44 n 30 ALA 44 H SER 45 n 31 SER 45 H LEU 46 n 32 LEU 46 H ILE 47 n 33 ILE 47 H SER 48 n 34 SER 48 H ASP 49 n 35 ASP 49 H ARG 50 n 36 ARG 50 H TRP 51 n 37 TRP 51 H VAL 52 n 38 VAL 52 H LEU 53 n 39 LEU 53 H THR 54 n 40 THR 54 H ALA 55 n 41 ALA 55 H ALA 56 n 42 ALA 56 H HIS 57 n 43 HIS 57 H CYS 58 n 44 CYS 58 H LEU 59 n 45 LEU 59 H LEU 60 n 46 LEU 60 H TYR 60 n 47 A TYR 60 H PRO 60 n 48 B PRO 60 H PRO 60 n 49 C PRO 60 H TRP 60 n 50 D TRP 60 H ASP 60 n 51 E ASP 60 H LYS 60 n 52 F LYS 60 H ASN 60 n 53 G ASN 60 H PHE 60 n 54 H PHE 60 H THR 60 n 55 I THR 60 H GLU 61 n 56 GLU 61 H ASN 62 n 57 ASN 62 H ASP 63 n 58 ASP 63 H LEU 64 n 59 LEU 64 H LEU 65 n 60 LEU 65 H VAL 66 n 61 VAL 66 H ARG 67 n 62 ARG 67 H ILE 68 n 63 ILE 68 H GLY 69 n 64 GLY 69 H LYS 70 n 65 LYS 70 H HIS 71 n 66 HIS 71 H SER 72 n 67 SER 72 H ARG 73 n 68 ARG 73 H THR 74 n 69 THR 74 H ARG 75 n 70 ARG 75 H TYR 76 n 71 TYR 76 H GLU 77 n 72 GLU 77 H ARG 77 n 73 A ARG 77 H ASN 78 n 74 ASN 78 H ILE 79 n 75 ILE 79 H GLU 80 n 76 GLU 80 H LYS 81 n 77 LYS 81 H ILE 82 n 78 ILE 82 H SER 83 n 79 SER 83 H MET 84 n 80 MET 84 H LEU 85 n 81 LEU 85 H GLU 86 n 82 GLU 86 H LYS 87 n 83 LYS 87 H ILE 88 n 84 ILE 88 H TYR 89 n 85 TYR 89 H ILE 90 n 86 ILE 90 H HIS 91 n 87 HIS 91 H PRO 92 n 88 PRO 92 H ARG 93 n 89 ARG 93 H TYR 94 n 90 TYR 94 H ASN 95 n 91 ASN 95 H TRP 96 n 92 TRP 96 H ARG 97 n 93 ARG 97 H GLU 97 n 94 A GLU 97 H ASN 98 n 95 ASN 98 H LEU 99 n 96 LEU 99 H ASP 100 n 97 ASP 100 H ARG 101 n 98 ARG 101 H ASP 102 n 99 ASP 102 H ILE 103 n 100 ILE 103 H ALA 104 n 101 ALA 104 H LEU 105 n 102 LEU 105 H MET 106 n 103 MET 106 H LYS 107 n 104 LYS 107 H LEU 108 n 105 LEU 108 H LYS 109 n 106 LYS 109 H LYS 110 n 107 LYS 110 H PRO 111 n 108 PRO 111 H VAL 112 n 109 VAL 112 H ALA 113 n 110 ALA 113 H PHE 114 n 111 PHE 114 H SER 115 n 112 SER 115 H ASP 116 n 113 ASP 116 H TYR 117 n 114 TYR 117 H ILE 118 n 115 ILE 118 H HIS 119 n 116 HIS 119 H PRO 120 n 117 PRO 120 H VAL 121 n 118 VAL 121 H CYS 122 n 119 CYS 122 H LEU 123 n 120 LEU 123 H PRO 124 n 121 PRO 124 H ASP 125 n 122 ASP 125 H ARG 126 n 123 ARG 126 H GLU 127 n 124 GLU 127 H THR 128 n 125 THR 128 H ALA 129 n 126 ALA 129 H ALA 129 n 127 A ALA 129 H SER 129 n 128 B SER 129 H LEU 129 n 129 C LEU 129 H LEU 130 n 130 LEU 130 H GLN 131 n 131 GLN 131 H ALA 132 n 132 ALA 132 H GLY 133 n 133 GLY 133 H TYR 134 n 134 TYR 134 H LYS 135 n 135 LYS 135 H GLY 136 n 136 GLY 136 H ARG 137 n 137 ARG 137 H VAL 138 n 138 VAL 138 H THR 139 n 139 THR 139 H GLY 140 n 140 GLY 140 H TRP 141 n 141 TRP 141 H GLY 142 n 142 GLY 142 H ASN 143 n 143 ASN 143 H LEU 144 n 144 LEU 144 H LYS 145 n 145 LYS 145 H GLU 146 n 146 GLU 146 H THR 147 n 147 THR 147 H n 148 148 H n 149 149 H n 150 A 149 H n 151 B 149 H n 152 C 149 H n 153 D 149 H n 154 E 149 H GLY 150 n 155 GLY 150 H GLN 151 n 156 GLN 151 H PRO 152 n 157 PRO 152 H SER 153 n 158 SER 153 H VAL 154 n 159 VAL 154 H LEU 155 n 160 LEU 155 H GLN 156 n 161 GLN 156 H VAL 157 n 162 VAL 157 H VAL 158 n 163 VAL 158 H ASN 159 n 164 ASN 159 H LEU 160 n 165 LEU 160 H PRO 161 n 166 PRO 161 H ILE 162 n 167 ILE 162 H VAL 163 n 168 VAL 163 H GLU 164 n 169 GLU 164 H ARG 165 n 170 ARG 165 H PRO 166 n 171 PRO 166 H VAL 167 n 172 VAL 167 H CYS 168 n 173 CYS 168 H LYS 169 n 174 LYS 169 H ASP 170 n 175 ASP 170 H SER 171 n 176 SER 171 H THR 172 n 177 THR 172 H ARG 173 n 178 ARG 173 H ILE 174 n 179 ILE 174 H ARG 175 n 180 ARG 175 H ILE 176 n 181 ILE 176 H THR 177 n 182 THR 177 H ASP 178 n 183 ASP 178 H ASN 179 n 184 ASN 179 H MET 180 n 185 MET 180 H PHE 181 n 186 PHE 181 H CYS 182 n 187 CYS 182 H ALA 183 n 188 ALA 183 H GLY 184 n 189 GLY 184 H TYR 184 n 190 A TYR 184 H LYS 185 n 191 LYS 185 H PRO 186 n 192 PRO 186 H ASP 186 n 193 A ASP 186 H GLU 186 n 194 B GLU 186 H GLY 186 n 195 C GLY 186 H LYS 186 n 196 D LYS 186 H ARG 187 n 197 ARG 187 H GLY 188 n 198 GLY 188 H ASP 189 n 199 ASP 189 H ALA 190 n 200 ALA 190 H CYS 191 n 201 CYS 191 H GLU 192 n 202 GLU 192 H GLY 193 n 203 GLY 193 H ASP 194 n 204 ASP 194 H SER 195 n 205 SER 195 H GLY 196 n 206 GLY 196 H GLY 197 n 207 GLY 197 H PRO 198 n 208 PRO 198 H PHE 199 n 209 PHE 199 H VAL 200 n 210 VAL 200 H MET 201 n 211 MET 201 H LYS 202 n 212 LYS 202 H SER 203 n 213 SER 203 H PRO 204 n 214 PRO 204 H PHE 204 n 215 A PHE 204 H ASN 204 n 216 B ASN 204 H ASN 205 n 217 ASN 205 H ARG 206 n 218 ARG 206 H TRP 207 n 219 TRP 207 H TYR 208 n 220 TYR 208 H GLN 209 n 221 GLN 209 H MET 210 n 222 MET 210 H GLY 211 n 223 GLY 211 H ILE 212 n 224 ILE 212 H VAL 213 n 225 VAL 213 H SER 214 n 226 SER 214 H TRP 215 n 227 TRP 215 H GLY 216 n 228 GLY 216 H GLU 217 n 229 GLU 217 H GLY 219 n 230 GLY 219 H CYS 220 n 231 CYS 220 H ASP 221 n 232 ASP 221 H ARG 221 n 233 A ARG 221 H ASP 222 n 234 ASP 222 H GLY 223 n 235 GLY 223 H LYS 224 n 236 LYS 224 H TYR 225 n 237 TYR 225 H GLY 226 n 238 GLY 226 H PHE 227 n 239 PHE 227 H TYR 228 n 240 TYR 228 H THR 229 n 241 THR 229 H HIS 230 n 242 HIS 230 H VAL 231 n 243 VAL 231 H PHE 232 n 244 PHE 232 H ARG 233 n 245 ARG 233 H LEU 234 n 246 LEU 234 H LYS 235 n 247 LYS 235 H LYS 236 n 248 LYS 236 H TRP 237 n 249 TRP 237 H ILE 238 n 250 ILE 238 H GLN 239 n 251 GLN 239 H LYS 240 n 252 LYS 240 H VAL 241 n 253 VAL 241 H ILE 242 n 254 ILE 242 H ASP 243 n 255 ASP 243 H GLN 244 n 256 GLN 244 H PHE 245 n 257 PHE 245 H GLY 246 n 258 GLY 246 H n 259 247 H n 1 53 I n 2 54 I ASP 55 n 3 ASP 55 I PHE 56 n 4 PHE 56 I GLU 57 n 5 GLU 57 I GLU 58 n 6 GLU 58 I ILE 59 n 7 ILE 59 I PRO 60 n 8 PRO 60 I GLU 61 n 9 GLU 61 I GLU 62 n 10 GLU 62 I TYS 63 n 11 TYS 63 I LEU 64 n 12 LEU 64 I GLN 65 n 13 GLN 65 I 1.0840 -0.7776 0.3112 0.7299 -0.1163 0.3205 0.2945 0.3075 -0.2176 -0.3162 -0.2010 0.0918 0.1276 -0.0273 -0.0696 0.1062 0.0679 -0.0178 0.1095 -0.0535 0.0742 refined 7.1790 -1.2853 12.5156 X-RAY DIFFRACTION 0.8028 -0.6338 0.5093 0.6932 -0.4177 0.3806 0.3348 0.3993 -0.0121 -0.4363 -0.3185 -0.0115 0.1005 0.2404 -0.0018 0.1374 0.0958 0.0113 0.1590 -0.0091 0.0912 refined 14.287 -1.182 20.708 X-RAY DIFFRACTION 1.0145 0.1137 -0.5010 0.6260 -0.0987 0.3502 0.3506 0.5117 -0.0582 -0.1870 -0.2183 -0.2424 0.0568 -0.0360 -0.0650 0.2292 0.1820 0.0801 0.2455 0.0365 0.1665 refined 16.349 -11.675 24.660 X-RAY DIFFRACTION 1.4339 -0.6827 0.2970 1.2024 0.1561 0.7022 0.1706 0.2373 0.0668 -0.1133 -0.1562 -0.0942 -0.0086 0.1307 -0.0166 0.0730 0.0445 0.0144 0.1000 0.0015 0.0501 refined 14.8271 2.8450 15.7229 X-RAY DIFFRACTION 0.8315 0.3160 -0.8949 0.4794 0.1323 1.7177 0.1075 0.2474 -0.6510 -0.0385 -0.1676 0.0034 0.3821 -0.0323 0.0199 0.2905 0.0398 -0.1599 0.1239 -0.0583 0.3815 refined 4.1163 -16.0677 15.9602 X-RAY DIFFRACTION 0.9530 -0.6493 -0.0051 0.7952 -0.3431 0.8365 0.0481 -0.0797 -0.1226 0.0498 -0.0042 0.0927 0.1317 -0.0318 -0.0405 0.0784 0.0102 -0.0035 0.0520 0.0006 0.0718 refined 10.1822 -4.5997 28.6294 X-RAY DIFFRACTION 0.2310 0.2419 -0.6902 1.5955 -1.2122 2.8295 0.2822 -0.0581 0.3362 0.1021 -0.1025 -0.3575 -0.3881 0.5511 -0.1546 0.1321 -0.0185 0.0376 0.1774 0.0128 0.2920 refined 27.2237 9.1670 21.9293 X-RAY DIFFRACTION 2.2042 -0.6139 -0.1900 1.0418 -0.2705 0.1591 0.5460 1.0331 -0.1662 -0.9194 -0.3793 -0.0711 0.0003 0.0161 -0.1764 0.4958 0.2317 0.0174 0.4741 -0.0802 0.0781 refined 11.4955 -1.1520 -3.1863 X-RAY DIFFRACTION 1.0419 -0.4089 -0.1653 0.2878 0.5916 2.2065 -0.0896 0.0619 0.6392 0.0252 0.0413 -0.5344 -0.4473 0.0763 0.0392 0.1606 0.0181 -0.0280 0.1093 0.0160 0.2286 refined 9.5716 17.4173 19.8158 X-RAY DIFFRACTION 1.8886 0.1870 -0.5406 1.3952 0.0765 0.3914 0.0790 -0.1084 0.0401 -0.1743 -0.2161 -0.0605 -0.2062 -0.1183 0.0978 0.1181 0.0974 0.0033 0.0961 -0.0199 0.0831 refined -1.7137 14.6579 18.3048 X-RAY DIFFRACTION 0.2913 -0.1607 0.1633 0.9268 0.4576 1.8304 0.0051 -0.2565 -0.0911 0.1369 -0.0487 0.3461 0.1155 -0.4193 0.1515 0.0810 0.0276 0.0366 0.1334 -0.0089 0.1122 refined -2.3656 5.6754 30.1532 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 (chain H and resid 16:37) X-RAY DIFFRACTION 2 (chain H and resid 38:60E) X-RAY DIFFRACTION 3 (chain H and resid 60F:62) X-RAY DIFFRACTION 4 (chain H and resid 63:143) X-RAY DIFFRACTION 5 (chain H and resid 144:151) X-RAY DIFFRACTION 6 (chain H and resid 152:232) X-RAY DIFFRACTION 7 (chain H and resid 233:246) X-RAY DIFFRACTION 8 (chain I and resid 55:64) X-RAY DIFFRACTION 9 (chain L and resid 1C:3) X-RAY DIFFRACTION 10 (chain L and resid 4:13) X-RAY DIFFRACTION 11 (chain L and resid 14:14K) author_and_software_defined_assembly PISA 3 trimeric 3370 -12 12910 G H ASN 60 GLYCOSYLATION SITE B ASN 53 ASN I TYS 63 O-SULFO-L-TYROSINE C TYS 11 TYR 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 H N SER 20 B N SER 5 H O VAL 157 B O VAL 162 H O VAL 158 B O VAL 163 H N VAL 138 B N VAL 138 H N ARG 137 B N ARG 137 H O VAL 200 B O VAL 210 H N MET 201 B N MET 211 H O TYR 208 B O TYR 220 H N TRP 215 B N TRP 227 H O PHE 227 B O PHE 239 H O TYR 228 B O TYR 240 H N PHE 181 B N PHE 186 H N LEU 33 B N LEU 18 H O LEU 41 B O LEU 27 H N SER 45 B N SER 31 H O LEU 53 B O LEU 39 H N THR 54 B N THR 40 H O ALA 104 B O ALA 101 H O LYS 107 B O LYS 104 H N GLU 86 B N GLU 82 H O LYS 81 B O LYS 77 H N ILE 68 B N ILE 63 H O LEU 65 B O LEU 60 H N PHE 34 B N PHE 19 A H N TYR 60 B N TYR 47 F H O LYS 60 B O LYS 52 1 H ARG 75 B ARG 70 1 H HOH 1093 L HOH 1 H HOH 1261 L HOH C 1 L CG GLU 1 A CG GLU 6 1 Y C 1 L CD GLU 1 A CD GLU 6 1 Y C 1 L OE1 GLU 1 A OE1 GLU 6 1 Y C 1 L OE2 GLU 1 A OE2 GLU 6 1 Y A 1 H CG ASP 186 B CG ASP 193 1 Y A 1 H OD1 ASP 186 B OD1 ASP 193 1 Y A 1 H OD2 ASP 186 B OD2 ASP 193 1 Y 1 H CG LYS 236 B CG LYS 248 1 Y 1 H CD LYS 236 B CD LYS 248 1 Y 1 H CE LYS 236 B CE LYS 248 1 Y 1 H NZ LYS 236 B NZ LYS 248 1 Y 1 H CG GLN 239 B CG GLN 251 1 Y 1 H CD GLN 239 B CD GLN 251 1 Y 1 H OE1 GLN 239 B OE1 GLN 251 1 Y 1 H NE2 GLN 239 B NE2 GLN 251 1 Y 1 I CG GLU 58 C CG GLU 6 1 Y 1 I CD GLU 58 C CD GLU 6 1 Y 1 I OE1 GLU 58 C OE1 GLU 6 1 Y 1 I OE2 GLU 58 C OE2 GLU 6 1 Y 1 I CG GLN 65 C CG GLN 13 1 Y 1 I CD GLN 65 C CD GLN 13 1 Y 1 I OE1 GLN 65 C OE1 GLN 13 1 Y 1 I NE2 GLN 65 C NE2 GLN 13 1 Y H 1 L THR 1 A THR 1 1 Y G 1 L PHE 1 A PHE 2 1 Y F 1 L GLY 1 A GLY 3 1 Y E 1 L SER 1 A SER 4 1 Y D 1 L GLY 1 A GLY 5 1 Y L 1 L ASP 14 A ASP 34 1 Y M 1 L GLY 14 A GLY 35 1 Y 1 L ARG 15 A ARG 36 1 Y 1 H TRP 148 B TRP 148 1 Y 1 H THR 149 B THR 149 1 Y A 1 H ALA 149 B ALA 150 1 Y B 1 H ASN 149 B ASN 151 1 Y C 1 H VAL 149 B VAL 152 1 Y D 1 H GLY 149 B GLY 153 1 Y E 1 H LYS 149 B LYS 154 1 Y 1 H GLU 247 B GLU 259 1 Y 1 I ASN 53 C ASN 1 1 Y 1 I GLY 54 C GLY 2 1 Y 1 L PHE 7 -126.54 -90.27 A 1 H SER 36 -161.93 118.38 A 1 H TYR 60 -155.98 81.33 G 1 H ASN 60 -156.78 82.50 1 H HIS 71 -128.84 -61.96 1 H ILE 79 -126.21 -63.44 A 1 H GLU 97 -112.32 -77.63 1 H SER 214 -120.67 -67.31 83.940 22.3951 4.740 3.9133 0.0000 -4.2516 -2.1641 0.0000 -1.7492 0.1852 0.1544 0.1559 0.1559 1.780 34.354 1551 32760 31209 4.97 92.76 1.000 0.270 0.8942 0.19 Random 1 Free R 0.00 MOLECULAR REPLACEMENT 17.7600 0.95 1.20 1H8D ML FLAT BULK SOLVENT MODEL 40.010 0.344 1.780 34.354 314 2723 68 0 2341 0.008 2533 1.055 3436 0.074 356 0.005 433 17.280 1001 0.2814 0.2066 1.8436 150 2692 2842 10 85.0000 0.2398 0.1854 1.9174 156 2764 2920 10 87.0000 0.2017 0.1595 2.0047 151 2898 3049 10 91.0000 0.2078 0.1508 2.1104 154 3001 3155 10 94.0000 0.1561 0.1386 2.2426 155 3013 3168 10 94.0000 0.1768 0.1386 2.4157 167 3020 3187 10 95.0000 0.1769 0.1595 2.6587 140 3054 3194 10 95.0000 0.2368 0.1659 3.0432 155 3064 3219 10 95.0000 0.1694 0.1449 3.8333 168 3091 3259 10 96.0000 0.1488 0.1490 34.3600 155 3061 3216 10 94.0000 13.540 1.78 50 3RMN 32972 32972 0.078 1 14.2 3.0 97.9 1.78 1.81 2.1 1610 0.476 1 2.9 99.4 data collection MAR345dtb phasing PHASER refinement PHENIX (phenix.refine: 1.6.4_486) data reduction HKL-2000 data scaling HKL-2000 Human Thrombin in complex with MI341 1 N N 2 N N 3 N N 4 N N 5 N N 6 N N 7 N N 7 N N 8 N N 8 N N 9 N N 9 N N 9 N N L PHE 7 A PHE 15 HELX_P L SER 11 A SER 19 5 1 5 L THR 14 A THR 24 HELX_P L TYR 14 A TYR 32 1 2 9 B J H ALA 55 B ALA 41 HELX_P H CYS 58 B CYS 44 5 3 4 H PRO 60 B PRO 48 HELX_P H ASP 60 B ASP 51 5 4 4 B E H THR 60 B THR 55 HELX_P H ASN 62 B ASN 57 5 5 3 I H ASP 125 B ASP 122 HELX_P H LEU 130 B LEU 130 1 6 9 H GLU 164 B GLU 169 HELX_P H SER 171 B SER 176 1 7 8 H LYS 185 B LYS 191 HELX_P H GLY 186 B GLY 195 5 8 5 C H LEU 234 B LEU 246 HELX_P H GLY 246 B GLY 258 1 9 13 I PRO 60 C PRO 8 HELX_P I LEU 64 C LEU 12 5 10 5 disulf 2.051 L CYS 1 A SG CYS 9 1_555 H CYS 122 B SG CYS 119 1_555 disulf 2.049 H CYS 42 B SG CYS 28 1_555 H CYS 58 B SG CYS 44 1_555 disulf 2.039 H CYS 168 B SG CYS 173 1_555 H CYS 182 B SG CYS 187 1_555 disulf 2.052 H CYS 191 B SG CYS 201 1_555 H CYS 220 B SG CYS 231 1_555 covale 1.430 one G G N-Glycosylation H ASN 60 B ND2 ASN 53 1_555 H NAG 260 D C1 NAG 1_555 covale 1.332 both I GLU 62 C C GLU 10 1_555 I TYS 63 C N TYS 11 1_555 covale 1.328 both I TYS 63 C C TYS 11 1_555 I LEU 64 C N LEU 12 1_555 HYDROLASE/HYDROLASE INHIBITOR Serine Protease, Kringle, Hydrolase, Blood Coagulation, Blood Clotting, Convertion of Fibrinogen to Fibrin, Hirudin, Glycosylation, Blood, HYDROLASE-HYDROLASE INHIBITOR complex H SER 36 B SER 22 A 1 H PRO 37 B PRO 23 -1.00 THRB_HUMAN UNP 1 328 P00734 TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR THRB_HUMAN UNP 2 364 P00734 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE HIRV2_HIRME UNP 3 60 P09945 NGDFEEIPEEYLQ 328 363 3RMN 1 15 P00734 H L 1 1 36 364 622 3RMN 16 247 P00734 H 2 1 259 60 72 3RMN 53 65 P09945 I 3 1 13 7 7 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel H SER 20 B SER 5 H ASP 21 B ASP 6 H GLN 156 B GLN 161 H PRO 161 B PRO 166 H LYS 135 B LYS 135 H GLY 140 B GLY 140 H PRO 198 B PRO 208 H LYS 202 B LYS 212 H TRP 207 B TRP 219 H TRP 215 B TRP 227 H GLY 226 B GLY 238 H HIS 230 B HIS 242 H MET 180 B MET 185 H ALA 183 B ALA 188 H GLN 30 B GLN 15 H ARG 35 B ARG 20 H GLU 39 B GLU 25 H LEU 46 B LEU 32 H TRP 51 B TRP 37 H THR 54 B THR 40 H ALA 104 B ALA 101 H LEU 108 B LEU 105 H LYS 81 B LYS 77 H ILE 90 B ILE 86 H LEU 64 B LEU 59 H ILE 68 B ILE 63 H GLN 30 B GLN 15 H ARG 35 B ARG 20 H LEU 60 B LEU 46 H TYR 60 B TYR 47 A H LYS 60 B LYS 52 H ASN 60 B ASN 53 F G 5 C 1 2 1