0.007946
0.004588
0.000000
0.000000
0.009175
0.000000
0.000000
0.000000
0.008593
0.000000
0.000000
0.000000
Shumilin, I.A.
Jha, K.N.
Cymborowski, M.
Herr, J.C.
0000-0001-7075-7090
Minor, W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
18
90.000
90.000
120.000
125.849
125.849
116.368
97986
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C7 H8 N4 O2
180.164
THEOPHYLLINE
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
SE
N
238
N
C
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
S
N
305
N
O
N
306
N
O
N
307
N
O
N
308
N
O
N
309
N
C
Y
310
N
N
Y
311
N
C
N
312
N
O
Y
313
N
N
N
314
N
C
Y
315
N
C
Y
316
N
C
Y
317
N
C
N
318
N
O
Y
319
N
N
Y
320
N
C
Y
321
N
N
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
N
N
331
S
C
N
332
N
C
N
333
N
O
N
334
R
C
N
335
N
O
N
336
N
C
N
337
N
O
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
N
N
348
S
C
N
349
N
C
N
350
N
O
N
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
N
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
N
N
375
S
C
N
376
N
C
N
377
N
O
N
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
N
385
N
O
N
386
N
O
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
N
N
399
S
C
N
400
N
C
N
401
N
O
N
402
N
C
N
403
N
C
N
404
N
C
N
405
N
O
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
doub
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
Y
298
N
sing
Y
299
N
sing
N
300
N
doub
Y
301
N
sing
N
302
N
sing
Y
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
Y
307
N
doub
Y
308
N
sing
Y
309
N
sing
Y
310
N
sing
N
311
N
doub
Y
312
N
sing
N
313
N
sing
Y
314
N
doub
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
doub
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
Y
343
N
doub
Y
344
N
sing
Y
345
N
sing
N
346
N
sing
Y
347
N
doub
Y
348
N
sing
Y
349
N
sing
N
350
N
sing
Y
351
N
sing
Y
352
N
doub
N
353
N
sing
Y
354
N
doub
N
355
N
sing
Y
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
doub
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
Y
371
N
doub
Y
372
N
sing
Y
373
N
sing
N
374
N
sing
Y
375
N
doub
N
376
N
sing
Y
377
N
doub
N
378
N
sing
Y
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
doub
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
UK
Structure
STRUE6
2005
0969-2126
20
1715
1725
10.1016/j.str.2012.07.016
22940582
Identification of unknown protein function using metabolite cocktail screening.
2012
0000-0001-7075-7090
10.2210/pdb3rox/pdb
pdb_00003rox
100.0
1
MIRRORS
CCD
2009-06-11
ADSC QUANTUM 210r
SI(111)
SINGLE WAVELENGTH
M
x-ray
1
0.97918
1.0
0.089
97986
19-BM
APS
0.97918
SYNCHROTRON
APS BEAMLINE 19-BM
29872.963
Apolipoprotein A-I-binding protein
1
man
polymer
96.063
SULFATE ION
1
syn
non-polymer
180.164
THEOPHYLLINE
1
syn
non-polymer
18.015
water
14
nat
water
AI-BP
no
yes
(MSE)QQSVCRARPIWWGTQRRGSET(MSE)AGAAVKYLSQEEAQAVDQELFNEYQFSVDQL(MSE)ELAGLSCATAIAK
AYPPTS(MSE)SKSPPTVLVICGPGNNGGDGLVCARHLKLFGYQPTIYYPKRPNKPLFTGLVTQCQK(MSE)DIPFLGE
(MSE)PPEP(MSE)(MSE)VDELYELVVDAIFGFSFKGDVREPFHSILSVLSGLTVPIASIDIPSGWDVEKGNPSGIQPD
LLISLTAPKKSATHFTGRYHYLGGRFVPPALEKKYQLNLPSYPDTECVYRLQHHHHHH
MQQSVCRARPIWWGTQRRGSETMAGAAVKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLSCATAIAKAYPPTSMSKSPP
TVLVICGPGNNGGDGLVCARHLKLFGYQPTIYYPKRPNKPLFTGLVTQCQKMDIPFLGEMPPEPMMVDELYELVVDAIFG
FSFKGDVREPFHSILSVLSGLTVPIASIDIPSGWDVEKGNPSGIQPDLLISLTAPKKSATHFTGRYHYLGGRFVPPALEK
KYQLNLPSYPDTECVYRLQHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
mouse
sample
Aibp, Apoa1bp
10090
Mus musculus
562
ESCHERICHIA COLI
BL21(DE3)
PLASMID
PET21A
1
2.97
58.56
VAPOR DIFFUSION, HANGING DROP
4.6
0.1 M SODIUM ACETATE, 1.5 M AMMONIUM SULFATE, PH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
audit_author
citation_author
database_2
struct_conn
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
chem_comp_atom
chem_comp_bond
repository
Initial release
Database references
Database references
Derived calculations
Structure summary
Data collection
Refinement description
Data collection
1
0
2012-07-18
1
1
2012-10-31
1
2
2022-04-13
1
3
2023-09-13
1
4
2023-12-06
_audit_author.identifier_ORCID
_citation_author.identifier_ORCID
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_chem_comp_atom.atom_id
_chem_comp_bond.atom_id_2
Apo-protein
Apo-protein
RCSB
Y
RCSB
2011-04-26
REL
REL
SO4
SULFATE ION
TEP
THEOPHYLLINE
HOH
water
2O8N
PDB ENTRY 2O8N
PDB
experimental model
SO4
1
2
SO4
SO4
265
A
TEP
2
3
TEP
TEP
266
A
HOH
1
4
HOH
HOH
267
A
HOH
2
4
HOH
HOH
268
A
HOH
3
4
HOH
HOH
269
A
HOH
4
4
HOH
HOH
270
A
HOH
5
4
HOH
HOH
271
A
HOH
6
4
HOH
HOH
272
A
HOH
7
4
HOH
HOH
273
A
HOH
8
4
HOH
HOH
274
A
HOH
9
4
HOH
HOH
275
A
HOH
10
4
HOH
HOH
276
A
HOH
11
4
HOH
HOH
277
A
HOH
12
4
HOH
HOH
278
A
HOH
13
4
HOH
HOH
279
A
HOH
14
4
HOH
HOH
280
A
n
1
0
A
n
2
1
A
n
3
2
A
n
4
3
A
n
5
4
A
n
6
5
A
n
7
6
A
n
8
7
A
n
9
8
A
n
10
9
A
n
11
10
A
n
12
11
A
n
13
12
A
n
14
13
A
n
15
14
A
n
16
15
A
n
17
16
A
n
18
17
A
n
19
18
A
n
20
19
A
n
21
20
A
n
22
21
A
n
23
22
A
n
24
23
A
n
25
24
A
n
26
25
A
ALA
26
n
27
ALA
26
A
VAL
27
n
28
VAL
27
A
LYS
28
n
29
LYS
28
A
TYR
29
n
30
TYR
29
A
LEU
30
n
31
LEU
30
A
SER
31
n
32
SER
31
A
GLN
32
n
33
GLN
32
A
GLU
33
n
34
GLU
33
A
GLU
34
n
35
GLU
34
A
ALA
35
n
36
ALA
35
A
GLN
36
n
37
GLN
36
A
ALA
37
n
38
ALA
37
A
VAL
38
n
39
VAL
38
A
ASP
39
n
40
ASP
39
A
GLN
40
n
41
GLN
40
A
GLU
41
n
42
GLU
41
A
LEU
42
n
43
LEU
42
A
PHE
43
n
44
PHE
43
A
ASN
44
n
45
ASN
44
A
GLU
45
n
46
GLU
45
A
TYR
46
n
47
TYR
46
A
GLN
47
n
48
GLN
47
A
PHE
48
n
49
PHE
48
A
SER
49
n
50
SER
49
A
VAL
50
n
51
VAL
50
A
ASP
51
n
52
ASP
51
A
GLN
52
n
53
GLN
52
A
LEU
53
n
54
LEU
53
A
MSE
54
n
55
MSE
54
A
GLU
55
n
56
GLU
55
A
LEU
56
n
57
LEU
56
A
ALA
57
n
58
ALA
57
A
GLY
58
n
59
GLY
58
A
LEU
59
n
60
LEU
59
A
SER
60
n
61
SER
60
A
CYS
61
n
62
CYS
61
A
ALA
62
n
63
ALA
62
A
THR
63
n
64
THR
63
A
ALA
64
n
65
ALA
64
A
ILE
65
n
66
ILE
65
A
ALA
66
n
67
ALA
66
A
LYS
67
n
68
LYS
67
A
ALA
68
n
69
ALA
68
A
TYR
69
n
70
TYR
69
A
PRO
70
n
71
PRO
70
A
PRO
71
n
72
PRO
71
A
THR
72
n
73
THR
72
A
SER
73
n
74
SER
73
A
MSE
74
n
75
MSE
74
A
SER
75
n
76
SER
75
A
LYS
76
n
77
LYS
76
A
SER
77
n
78
SER
77
A
PRO
78
n
79
PRO
78
A
PRO
79
n
80
PRO
79
A
THR
80
n
81
THR
80
A
VAL
81
n
82
VAL
81
A
LEU
82
n
83
LEU
82
A
VAL
83
n
84
VAL
83
A
ILE
84
n
85
ILE
84
A
CYS
85
n
86
CYS
85
A
GLY
86
n
87
GLY
86
A
PRO
87
n
88
PRO
87
A
GLY
88
n
89
GLY
88
A
ASN
89
n
90
ASN
89
A
ASN
90
n
91
ASN
90
A
GLY
91
n
92
GLY
91
A
GLY
92
n
93
GLY
92
A
ASP
93
n
94
ASP
93
A
GLY
94
n
95
GLY
94
A
LEU
95
n
96
LEU
95
A
VAL
96
n
97
VAL
96
A
CYS
97
n
98
CYS
97
A
ALA
98
n
99
ALA
98
A
ARG
99
n
100
ARG
99
A
HIS
100
n
101
HIS
100
A
LEU
101
n
102
LEU
101
A
LYS
102
n
103
LYS
102
A
LEU
103
n
104
LEU
103
A
PHE
104
n
105
PHE
104
A
GLY
105
n
106
GLY
105
A
TYR
106
n
107
TYR
106
A
GLN
107
n
108
GLN
107
A
PRO
108
n
109
PRO
108
A
THR
109
n
110
THR
109
A
ILE
110
n
111
ILE
110
A
TYR
111
n
112
TYR
111
A
TYR
112
n
113
TYR
112
A
PRO
113
n
114
PRO
113
A
LYS
114
n
115
LYS
114
A
ARG
115
n
116
ARG
115
A
PRO
116
n
117
PRO
116
A
ASN
117
n
118
ASN
117
A
LYS
118
n
119
LYS
118
A
PRO
119
n
120
PRO
119
A
LEU
120
n
121
LEU
120
A
PHE
121
n
122
PHE
121
A
THR
122
n
123
THR
122
A
GLY
123
n
124
GLY
123
A
LEU
124
n
125
LEU
124
A
VAL
125
n
126
VAL
125
A
THR
126
n
127
THR
126
A
GLN
127
n
128
GLN
127
A
CYS
128
n
129
CYS
128
A
GLN
129
n
130
GLN
129
A
LYS
130
n
131
LYS
130
A
MSE
131
n
132
MSE
131
A
ASP
132
n
133
ASP
132
A
ILE
133
n
134
ILE
133
A
PRO
134
n
135
PRO
134
A
PHE
135
n
136
PHE
135
A
LEU
136
n
137
LEU
136
A
GLY
137
n
138
GLY
137
A
GLU
138
n
139
GLU
138
A
MSE
139
n
140
MSE
139
A
PRO
140
n
141
PRO
140
A
PRO
141
n
142
PRO
141
A
GLU
142
n
143
GLU
142
A
PRO
143
n
144
PRO
143
A
MSE
144
n
145
MSE
144
A
MSE
145
n
146
MSE
145
A
VAL
146
n
147
VAL
146
A
ASP
147
n
148
ASP
147
A
GLU
148
n
149
GLU
148
A
LEU
149
n
150
LEU
149
A
TYR
150
n
151
TYR
150
A
GLU
151
n
152
GLU
151
A
LEU
152
n
153
LEU
152
A
VAL
153
n
154
VAL
153
A
VAL
154
n
155
VAL
154
A
ASP
155
n
156
ASP
155
A
ALA
156
n
157
ALA
156
A
ILE
157
n
158
ILE
157
A
PHE
158
n
159
PHE
158
A
GLY
159
n
160
GLY
159
A
PHE
160
n
161
PHE
160
A
SER
161
n
162
SER
161
A
PHE
162
n
163
PHE
162
A
LYS
163
n
164
LYS
163
A
GLY
164
n
165
GLY
164
A
ASP
165
n
166
ASP
165
A
VAL
166
n
167
VAL
166
A
ARG
167
n
168
ARG
167
A
GLU
168
n
169
GLU
168
A
PRO
169
n
170
PRO
169
A
PHE
170
n
171
PHE
170
A
HIS
171
n
172
HIS
171
A
SER
172
n
173
SER
172
A
ILE
173
n
174
ILE
173
A
LEU
174
n
175
LEU
174
A
SER
175
n
176
SER
175
A
VAL
176
n
177
VAL
176
A
LEU
177
n
178
LEU
177
A
SER
178
n
179
SER
178
A
GLY
179
n
180
GLY
179
A
LEU
180
n
181
LEU
180
A
THR
181
n
182
THR
181
A
VAL
182
n
183
VAL
182
A
PRO
183
n
184
PRO
183
A
ILE
184
n
185
ILE
184
A
ALA
185
n
186
ALA
185
A
SER
186
n
187
SER
186
A
ILE
187
n
188
ILE
187
A
ASP
188
n
189
ASP
188
A
ILE
189
n
190
ILE
189
A
PRO
190
n
191
PRO
190
A
SER
191
n
192
SER
191
A
GLY
192
n
193
GLY
192
A
TRP
193
n
194
TRP
193
A
ASP
194
n
195
ASP
194
A
VAL
195
n
196
VAL
195
A
GLU
196
n
197
GLU
196
A
LYS
197
n
198
LYS
197
A
GLY
198
n
199
GLY
198
A
ASN
199
n
200
ASN
199
A
PRO
200
n
201
PRO
200
A
SER
201
n
202
SER
201
A
GLY
202
n
203
GLY
202
A
ILE
203
n
204
ILE
203
A
GLN
204
n
205
GLN
204
A
PRO
205
n
206
PRO
205
A
ASP
206
n
207
ASP
206
A
LEU
207
n
208
LEU
207
A
LEU
208
n
209
LEU
208
A
ILE
209
n
210
ILE
209
A
SER
210
n
211
SER
210
A
LEU
211
n
212
LEU
211
A
THR
212
n
213
THR
212
A
ALA
213
n
214
ALA
213
A
PRO
214
n
215
PRO
214
A
LYS
215
n
216
LYS
215
A
LYS
216
n
217
LYS
216
A
SER
217
n
218
SER
217
A
ALA
218
n
219
ALA
218
A
THR
219
n
220
THR
219
A
HIS
220
n
221
HIS
220
A
PHE
221
n
222
PHE
221
A
THR
222
n
223
THR
222
A
GLY
223
n
224
GLY
223
A
ARG
224
n
225
ARG
224
A
TYR
225
n
226
TYR
225
A
HIS
226
n
227
HIS
226
A
TYR
227
n
228
TYR
227
A
LEU
228
n
229
LEU
228
A
GLY
229
n
230
GLY
229
A
GLY
230
n
231
GLY
230
A
ARG
231
n
232
ARG
231
A
PHE
232
n
233
PHE
232
A
VAL
233
n
234
VAL
233
A
PRO
234
n
235
PRO
234
A
PRO
235
n
236
PRO
235
A
ALA
236
n
237
ALA
236
A
LEU
237
n
238
LEU
237
A
GLU
238
n
239
GLU
238
A
LYS
239
n
240
LYS
239
A
LYS
240
n
241
LYS
240
A
TYR
241
n
242
TYR
241
A
GLN
242
n
243
GLN
242
A
LEU
243
n
244
LEU
243
A
ASN
244
n
245
ASN
244
A
LEU
245
n
246
LEU
245
A
PRO
246
n
247
PRO
246
A
SER
247
n
248
SER
247
A
TYR
248
n
249
TYR
248
A
PRO
249
n
250
PRO
249
A
ASP
250
n
251
ASP
250
A
THR
251
n
252
THR
251
A
GLU
252
n
253
GLU
252
A
CYS
253
n
254
CYS
253
A
VAL
254
n
255
VAL
254
A
TYR
255
n
256
TYR
255
A
ARG
256
n
257
ARG
256
A
LEU
257
n
258
LEU
257
A
GLN
258
n
259
GLN
258
A
n
260
259
A
n
261
260
A
n
262
261
A
n
263
262
A
n
264
263
A
n
265
264
A
7.1268
5.2273
-0.1012
17.4306
-3.5012
6.1815
0.1557
0.4599
-0.2598
-3.0888
-0.8980
-2.7460
1.1740
0.7274
0.7424
1.1385
0.4769
0.7412
0.3036
0.3601
0.7580
refined
14.0520
28.6120
25.9580
X-RAY DIFFRACTION
1.1636
-0.1882
-0.0588
13.1232
-6.4708
4.2356
0.2395
0.0088
0.0853
0.5099
-0.2468
0.0307
-0.2729
-0.0392
0.0073
0.3042
-0.0702
-0.0527
0.1045
0.0249
0.1638
refined
3.3930
24.5720
46.0330
X-RAY DIFFRACTION
3.1653
-0.2218
0.6278
12.6515
-3.0531
3.0704
0.2288
0.0145
-0.0580
0.1918
-1.1596
-1.9242
-0.0454
0.4704
0.9308
0.1964
-0.0299
-0.1450
0.1759
0.2603
0.5087
refined
12.8740
18.2240
47.9230
X-RAY DIFFRACTION
1.0929
-0.3282
0.0643
8.8005
-2.7048
5.2286
0.1845
0.1202
-0.2068
-2.1439
-0.4154
-0.5849
1.0938
0.2752
0.2308
0.7602
0.1218
0.0948
0.0937
0.0547
0.2274
refined
7.9920
11.3680
35.7080
X-RAY DIFFRACTION
2.6288
0.2822
-0.4955
11.2160
-3.4135
3.6445
0.2289
0.1704
0.0063
-2.6128
-0.1816
0.2365
0.9242
-0.3552
-0.0473
0.9940
0.0048
-0.1404
0.1629
0.0563
0.1264
refined
0.9830
26.7800
26.9310
X-RAY DIFFRACTION
A
26
A
55
X-RAY DIFFRACTION
1
A
56
A
109
X-RAY DIFFRACTION
2
A
110
A
162
X-RAY DIFFRACTION
3
A
163
A
214
X-RAY DIFFRACTION
4
A
215
A
258
X-RAY DIFFRACTION
5
author_and_software_defined_assembly
PISA
2
dimeric
2800
-16
19080
A
MSE
54
SELENOMETHIONINE
A
MSE
55
MET
A
MSE
74
SELENOMETHIONINE
A
MSE
75
MET
A
MSE
131
SELENOMETHIONINE
A
MSE
132
MET
A
MSE
139
SELENOMETHIONINE
A
MSE
140
MET
A
MSE
144
SELENOMETHIONINE
A
MSE
145
MET
A
MSE
145
SELENOMETHIONINE
A
MSE
146
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
17_555
x-y+1/3,-y+2/3,-z+2/3
crystal symmetry operation
0.0000000000
72.6589540272
77.5786666667
A
O
THR
109
A
O
THR
110
A
N
VAL
83
A
N
VAL
84
A
N
LEU
82
A
N
LEU
83
A
O
VAL
154
A
O
VAL
155
A
N
ASP
155
A
N
ASP
156
A
O
ALA
185
A
O
ALA
186
A
N
SER
186
A
N
SER
187
A
O
LEU
207
A
O
LEU
208
A
N
SER
210
A
N
SER
211
A
O
GLY
229
A
O
GLY
230
A
N
LEU
228
A
N
LEU
229
A
O
TYR
255
A
O
TYR
256
1
A
MSE
0
A
MSE
1
1
Y
1
A
GLN
1
A
GLN
2
1
Y
1
A
GLN
2
A
GLN
3
1
Y
1
A
SER
3
A
SER
4
1
Y
1
A
VAL
4
A
VAL
5
1
Y
1
A
CYS
5
A
CYS
6
1
Y
1
A
ARG
6
A
ARG
7
1
Y
1
A
ALA
7
A
ALA
8
1
Y
1
A
ARG
8
A
ARG
9
1
Y
1
A
PRO
9
A
PRO
10
1
Y
1
A
ILE
10
A
ILE
11
1
Y
1
A
TRP
11
A
TRP
12
1
Y
1
A
TRP
12
A
TRP
13
1
Y
1
A
GLY
13
A
GLY
14
1
Y
1
A
THR
14
A
THR
15
1
Y
1
A
GLN
15
A
GLN
16
1
Y
1
A
ARG
16
A
ARG
17
1
Y
1
A
ARG
17
A
ARG
18
1
Y
1
A
GLY
18
A
GLY
19
1
Y
1
A
SER
19
A
SER
20
1
Y
1
A
GLU
20
A
GLU
21
1
Y
1
A
THR
21
A
THR
22
1
Y
1
A
MSE
22
A
MSE
23
1
Y
1
A
ALA
23
A
ALA
24
1
Y
1
A
GLY
24
A
GLY
25
1
Y
1
A
ALA
25
A
ALA
26
1
Y
1
A
HIS
259
A
HIS
260
1
Y
1
A
HIS
260
A
HIS
261
1
Y
1
A
HIS
261
A
HIS
262
1
Y
1
A
HIS
262
A
HIS
263
1
Y
1
A
HIS
263
A
HIS
264
1
Y
1
A
HIS
264
A
HIS
265
1
Y
1
A
ASP
165
59.45
75.42
1
A
ASP
188
77.31
-58.47
1
A
ASN
199
170.18
103.48
1
A
THR
212
71.83
-69.01
1
A
PHE
232
-150.55
15.10
1
A
ASP
250
35.14
-110.51
147.34
66.322
3.14
-1.850
-0.920
0.000
-1.850
0.000
2.770
0.961
0.939
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS; U VALUES: RESIDUAL ONLY
0.228
0.177
0.180
2.400
50.000
656
13237
5.000
94.430
1.00
1.00
17.312
0.182
RANDOM
1
THROUGHOUT
0.00
MOLECULAR REPLACEMENT
0.217
0.800
0.800
1.200
PDB ENTRY 2O8N
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
2.400
50.000
14
1840
18
0
1808
0.019
0.022
1877
0.001
0.020
1274
1.786
2.005
2559
0.967
3.000
3133
6.578
5.000
232
41.249
24.667
75
17.161
15.000
301
17.908
15.000
6
0.094
0.200
278
0.010
0.021
2061
0.001
0.020
351
0.786
1.500
1169
0.183
1.500
460
1.442
2.000
1900
2.585
3.000
708
3.924
4.500
659
0.288
0.231
2.463
57
962
1019
20
98.930
45.6
2.35
50.00
3ROX
97986
97986
0
-3
0.089
0.089
1
42.447
6.9
94.9
0.498
2.35
2.39
5.677
0.498
1
7.2
100.0
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.5.0109
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.006
data collection
HKL-3000
data reduction
HKL-3000
data scaling
HKL-3000
phasing
HKL-3000
MOLREP
Crystal Structure of Mouse Apolipoprotein A-I Binding Protein in Complex with Theophylline
1
N
N
2
N
N
3
N
N
4
N
N
A
SER
31
A
SER
32
HELX_P
A
GLU
45
A
GLU
46
1
1
15
A
SER
49
A
SER
50
HELX_P
A
TYR
69
A
TYR
70
1
2
21
A
PRO
70
A
PRO
71
HELX_P
A
MSE
74
A
MSE
75
5
3
5
A
GLY
88
A
GLY
89
HELX_P
A
GLY
105
A
GLY
106
1
4
18
A
LYS
118
A
LYS
119
HELX_P
A
MSE
131
A
MSE
132
1
5
14
A
GLU
142
A
GLU
143
HELX_P
A
TYR
150
A
TYR
151
1
6
9
A
PRO
169
A
PRO
170
HELX_P
A
GLY
179
A
GLY
180
1
7
11
A
LYS
215
A
LYS
216
HELX_P
A
HIS
220
A
HIS
221
5
8
6
A
PRO
234
A
PRO
235
HELX_P
A
TYR
241
A
TYR
242
1
9
8
covale
1.312
both
A
LEU
53
A
C
LEU
54
1_555
A
MSE
54
A
N
MSE
55
1_555
covale
1.312
both
A
MSE
54
A
C
MSE
55
1_555
A
GLU
55
A
N
GLU
56
1_555
covale
1.327
both
A
SER
73
A
C
SER
74
1_555
A
MSE
74
A
N
MSE
75
1_555
covale
1.330
both
A
MSE
74
A
C
MSE
75
1_555
A
SER
75
A
N
SER
76
1_555
covale
1.338
both
A
LYS
130
A
C
LYS
131
1_555
A
MSE
131
A
N
MSE
132
1_555
covale
1.333
both
A
MSE
131
A
C
MSE
132
1_555
A
ASP
132
A
N
ASP
133
1_555
covale
1.326
both
A
GLU
138
A
C
GLU
139
1_555
A
MSE
139
A
N
MSE
140
1_555
covale
1.333
both
A
MSE
139
A
C
MSE
140
1_555
A
PRO
140
A
N
PRO
141
1_555
covale
1.312
both
A
PRO
143
A
C
PRO
144
1_555
A
MSE
144
A
N
MSE
145
1_555
covale
1.323
both
A
MSE
144
A
C
MSE
145
1_555
A
MSE
145
A
N
MSE
146
1_555
covale
1.342
both
A
MSE
145
A
C
MSE
146
1_555
A
VAL
146
A
N
VAL
147
1_555
PROTEIN BINDING
ROSSMANN FOLD, PROTEIN BINDING
A
SER
77
A
SER
78
1
A
PRO
78
A
PRO
79
-2.19
A
GLY
164
A
GLY
165
1
A
ASP
165
A
ASP
166
14.67
A
GLU
168
A
GLU
169
1
A
PRO
169
A
PRO
170
1.27
AIBP_MOUSE
UNP
1
25
Q8K4Z3
QQSVCRARPIWWGTQRRGSETMAGAAVKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLSCATAIAKAYPPTSMSKSPPT
VLVICGPGNNGGDGLVCARHLKLFGYQPTIYYPKRPNKPLFTGLVTQCQKMDIPFLGEMPPEPMMVDELYELVVDAIFGF
SFKGDVREPFHSILSVLSGLTVPIASIDIPSGWDVEKGNPSGIQPDLLISLTAPKKSATHFTGRYHYLGGRFVPPALEKK
YQLNLPSYPDTECVYRLQ
25
282
3ROX
1
258
Q8K4Z3
A
1
2
259
1
expression tag
MSE
0
3ROX
A
Q8K4Z3
UNP
1
1
expression tag
HIS
259
3ROX
A
Q8K4Z3
UNP
260
1
expression tag
HIS
260
3ROX
A
Q8K4Z3
UNP
261
1
expression tag
HIS
261
3ROX
A
Q8K4Z3
UNP
262
1
expression tag
HIS
262
3ROX
A
Q8K4Z3
UNP
263
1
expression tag
HIS
263
3ROX
A
Q8K4Z3
UNP
264
1
expression tag
HIS
264
3ROX
A
Q8K4Z3
UNP
265
7
parallel
parallel
parallel
parallel
parallel
anti-parallel
A
GLN
107
A
GLN
108
A
TYR
111
A
TYR
112
A
THR
80
A
THR
81
A
CYS
85
A
CYS
86
A
VAL
153
A
VAL
154
A
ALA
156
A
ALA
157
A
ILE
184
A
ILE
185
A
ILE
187
A
ILE
188
A
LEU
207
A
LEU
208
A
LEU
211
A
LEU
212
A
TYR
225
A
TYR
226
A
GLY
229
A
GLY
230
A
VAL
254
A
VAL
255
A
ARG
256
A
ARG
257
BINDING SITE FOR RESIDUE SO4 A 265
A
SO4
265
Software
6
BINDING SITE FOR RESIDUE TEP A 266
A
TEP
266
Software
9
A
ASN
89
A
ASN
90
6
1_555
A
ASN
90
A
ASN
91
6
1_555
A
GLY
159
A
GLY
160
6
1_555
A
PHE
160
A
PHE
161
6
1_555
A
SER
161
A
SER
162
6
1_555
A
PHE
162
A
PHE
163
6
1_555
A
VAL
38
A
VAL
39
9
1_555
A
ASP
39
A
ASP
40
9
1_555
A
LEU
42
A
LEU
43
9
1_555
A
PHE
160
A
PHE
161
9
1_555
A
ASP
188
A
ASP
189
9
1_555
A
LEU
211
A
LEU
212
9
1_555
A
THR
212
A
THR
213
9
1_555
A
LYS
215
A
LYS
216
9
1_555
A
HOH
271
D
HOH
9
1_555
155
H 3 2