0.018103
0.010452
0.000000
0.000000
0.020903
0.000000
0.000000
0.000000
0.010480
0.000000
0.000000
0.000000
Seattle Structural Genomics Center for Infectious Disease (SSGCID)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.000
90.000
120.000
55.240
55.240
95.420
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C6 H8 O7
192.124
CITRIC ACID
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C4 H8 N O7 P
213.083
n
ASPARTYL PHOSPHATE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CA
N
75
N
C
N
76
N
O
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
O
N
81
N
C
N
82
N
C
N
83
N
O
N
84
N
O
N
85
N
C
N
86
N
O
N
87
N
O
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
N
N
97
R
C
N
98
N
C
N
99
N
O
N
100
N
C
N
101
N
S
N
102
N
O
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
N
N
111
S
C
N
112
N
C
N
113
N
O
N
114
N
C
N
115
N
C
N
116
N
C
N
117
N
O
N
118
N
N
N
119
N
O
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
N
N
131
S
C
N
132
N
C
N
133
N
O
N
134
N
C
N
135
N
C
N
136
N
C
N
137
N
O
N
138
N
O
N
139
N
O
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
N
N
150
N
C
N
151
N
C
N
152
N
O
N
153
N
O
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
C
N
160
N
O
N
161
N
C
N
162
N
O
N
163
N
C
N
164
N
O
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
N
N
174
S
C
N
175
N
C
N
176
N
O
N
177
N
C
Y
178
N
C
Y
179
N
N
Y
180
N
C
Y
181
N
C
Y
182
N
N
N
183
N
O
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
O
N
195
N
H
N
196
N
H
N
197
N
N
N
198
S
C
N
199
N
C
N
200
N
O
N
201
S
C
N
202
N
C
N
203
N
C
N
204
N
C
N
205
N
O
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
N
N
220
S
C
N
221
N
C
N
222
N
O
N
223
N
C
N
224
N
C
N
225
N
C
N
226
N
C
N
227
N
O
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
N
N
242
S
C
N
243
N
C
N
244
N
O
N
245
N
C
N
246
N
C
N
247
N
C
N
248
N
C
N
249
N
N
N
250
N
O
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
N
N
267
S
C
N
268
N
C
N
269
N
O
N
270
N
C
N
271
N
C
N
272
N
S
N
273
N
C
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
N
N
287
S
C
N
288
N
C
N
289
N
O
N
290
N
C
N
291
N
C
N
292
N
O
N
293
N
O
N
294
N
P
N
295
N
O
N
296
N
O
N
297
N
O
N
298
N
O
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
C
Y
316
N
C
Y
317
N
C
N
318
N
O
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
N
N
331
S
C
N
332
N
C
N
333
N
O
N
334
N
C
N
335
N
C
N
336
N
C
N
337
N
O
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
N
N
348
S
C
N
349
N
C
N
350
N
O
N
351
N
C
N
352
N
O
N
353
N
O
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
S
N
362
N
O
N
363
N
O
N
364
N
O
N
365
N
O
N
366
N
N
N
367
S
C
N
368
N
C
N
369
N
O
N
370
R
C
N
371
N
O
N
372
N
C
N
373
N
O
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
N
N
384
S
C
N
385
N
C
N
386
N
O
N
387
N
C
Y
388
N
C
Y
389
N
C
Y
390
N
C
Y
391
N
N
Y
392
N
C
Y
393
N
C
Y
394
N
C
Y
395
N
C
Y
396
N
C
N
397
N
O
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
N
N
411
S
C
N
412
N
C
N
413
N
O
N
414
N
C
Y
415
N
C
Y
416
N
C
Y
417
N
C
Y
418
N
C
Y
419
N
C
Y
420
N
C
N
421
N
O
N
422
N
O
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
N
N
435
S
C
N
436
N
C
N
437
N
O
N
438
N
C
N
439
N
C
N
440
N
C
N
441
N
O
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
doub
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
doub
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
doub
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
doub
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
doub
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
doub
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
Y
173
N
sing
Y
174
N
doub
Y
175
N
doub
N
176
N
sing
Y
177
N
sing
N
178
N
sing
Y
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
doub
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
doub
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
doub
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
Y
301
N
doub
Y
302
N
sing
Y
303
N
sing
N
304
N
sing
Y
305
N
doub
N
306
N
sing
Y
307
N
doub
N
308
N
sing
Y
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
doub
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
doub
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
doub
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
doub
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
doub
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
Y
374
N
doub
Y
375
N
sing
Y
376
N
sing
N
377
N
sing
Y
378
N
doub
Y
379
N
sing
Y
380
N
sing
N
381
N
sing
Y
382
N
sing
Y
383
N
doub
N
384
N
sing
Y
385
N
doub
N
386
N
sing
Y
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
doub
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
Y
402
N
doub
Y
403
N
sing
Y
404
N
sing
N
405
N
sing
Y
406
N
doub
N
407
N
sing
Y
408
N
doub
N
409
N
sing
Y
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
doub
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
To be Published
0353
Crystal structure of a response regulator protein from Burkholderia pseudomallei with a phosphorylated aspartic acid, calcium ion and citrate
10.2210/pdb3rqi/pdb
pdb_00003rqi
100
1
CCD
2011-04-10
ADSC QUANTUM 315r
SINGLE WAVELENGTH
M
x-ray
1
0.97740
1.0
5.0.1
ALS
0.97740
SYNCHROTRON
ALS BEAMLINE 5.0.1
20170.686
Response regulator protein
1
man
polymer
40.078
CALCIUM ION
1
syn
non-polymer
192.124
CITRIC ACID
1
syn
non-polymer
96.063
SULFATE ION
2
syn
non-polymer
92.094
GLYCEROL
1
syn
non-polymer
18.015
water
127
nat
water
no
yes
GPGSMSDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITV(PHD)LHLGNDSGLSLIAPLCDL
QPDARILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEVQAEEALENPVVLSVDRLEWEHIQRVLAENN
NNISATARALNMHRRTLQRKLAKKPVRQ
GPGSMSDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVDLHLGNDSGLSLIAPLCDLQPDA
RILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEVQAEEALENPVVLSVDRLEWEHIQRVLAENNNNIS
ATARALNMHRRTLQRKLAKKPVRQ
A
BupsA.00608.a
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
1710b
sample
BURPS1710b_0384
320372
Burkholderia pseudomallei
562
Escherichia coli
plasmid
pAVA0421
1
2.08
40.97
VAPOR DIFFUSION, SITTING DROP
4.2
BupsA.00608.a.A1 PW30798 at 30.69 mg/mL against JCSG+ screen condition A6, 0.2 M Li2SO4, 0.1 M phosphate/citrate pH 4.2, 20% PEG 1000 with 25% ethylene glycol as cryo-protectant, crystal tracking ID 220922a6, VAPOR DIFFUSION, SITTING DROP, temperature 289K
289
Seattle Structural Genomics Center for Infectious Disease
SSGCID
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2011-05-11
1
1
2011-07-13
1
2
2023-09-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2011-04-28
REL
REL
CA
CALCIUM ION
CIT
CITRIC ACID
SO4
SULFATE ION
GOL
GLYCEROL
HOH
water
1ZY2
PDB
experimental model
CA
1
2
CA
CA
181
A
CIT
2
3
CIT
CIT
182
A
SO4
3
4
SO4
SO4
183
A
SO4
4
4
SO4
SO4
184
A
GOL
5
5
GOL
GOL
185
A
HOH
1
6
HOH
HOH
186
A
HOH
2
6
HOH
HOH
187
A
HOH
3
6
HOH
HOH
188
A
HOH
4
6
HOH
HOH
189
A
HOH
5
6
HOH
HOH
190
A
HOH
6
6
HOH
HOH
191
A
HOH
7
6
HOH
HOH
192
A
HOH
8
6
HOH
HOH
193
A
HOH
9
6
HOH
HOH
194
A
HOH
10
6
HOH
HOH
195
A
HOH
11
6
HOH
HOH
196
A
HOH
12
6
HOH
HOH
197
A
HOH
13
6
HOH
HOH
198
A
HOH
14
6
HOH
HOH
199
A
HOH
15
6
HOH
HOH
200
A
HOH
16
6
HOH
HOH
201
A
HOH
17
6
HOH
HOH
202
A
HOH
18
6
HOH
HOH
203
A
HOH
19
6
HOH
HOH
204
A
HOH
20
6
HOH
HOH
205
A
HOH
21
6
HOH
HOH
206
A
HOH
22
6
HOH
HOH
207
A
HOH
23
6
HOH
HOH
208
A
HOH
24
6
HOH
HOH
209
A
HOH
25
6
HOH
HOH
210
A
HOH
26
6
HOH
HOH
211
A
HOH
27
6
HOH
HOH
212
A
HOH
28
6
HOH
HOH
213
A
HOH
29
6
HOH
HOH
214
A
HOH
30
6
HOH
HOH
215
A
HOH
31
6
HOH
HOH
216
A
HOH
32
6
HOH
HOH
217
A
HOH
33
6
HOH
HOH
218
A
HOH
34
6
HOH
HOH
219
A
HOH
35
6
HOH
HOH
220
A
HOH
36
6
HOH
HOH
221
A
HOH
37
6
HOH
HOH
222
A
HOH
38
6
HOH
HOH
223
A
HOH
39
6
HOH
HOH
224
A
HOH
40
6
HOH
HOH
225
A
HOH
41
6
HOH
HOH
226
A
HOH
42
6
HOH
HOH
227
A
HOH
43
6
HOH
HOH
228
A
HOH
44
6
HOH
HOH
229
A
HOH
45
6
HOH
HOH
230
A
HOH
46
6
HOH
HOH
231
A
HOH
47
6
HOH
HOH
232
A
HOH
48
6
HOH
HOH
233
A
HOH
49
6
HOH
HOH
234
A
HOH
50
6
HOH
HOH
235
A
HOH
51
6
HOH
HOH
236
A
HOH
52
6
HOH
HOH
237
A
HOH
53
6
HOH
HOH
238
A
HOH
54
6
HOH
HOH
239
A
HOH
55
6
HOH
HOH
240
A
HOH
56
6
HOH
HOH
241
A
HOH
57
6
HOH
HOH
242
A
HOH
58
6
HOH
HOH
243
A
HOH
59
6
HOH
HOH
244
A
HOH
60
6
HOH
HOH
245
A
HOH
61
6
HOH
HOH
246
A
HOH
62
6
HOH
HOH
247
A
HOH
63
6
HOH
HOH
248
A
HOH
64
6
HOH
HOH
249
A
HOH
65
6
HOH
HOH
250
A
HOH
66
6
HOH
HOH
251
A
HOH
67
6
HOH
HOH
252
A
HOH
68
6
HOH
HOH
253
A
HOH
69
6
HOH
HOH
254
A
HOH
70
6
HOH
HOH
255
A
HOH
71
6
HOH
HOH
256
A
HOH
72
6
HOH
HOH
257
A
HOH
73
6
HOH
HOH
258
A
HOH
74
6
HOH
HOH
259
A
HOH
75
6
HOH
HOH
260
A
HOH
76
6
HOH
HOH
261
A
HOH
77
6
HOH
HOH
262
A
HOH
78
6
HOH
HOH
263
A
HOH
79
6
HOH
HOH
264
A
HOH
80
6
HOH
HOH
265
A
HOH
81
6
HOH
HOH
266
A
HOH
82
6
HOH
HOH
267
A
HOH
83
6
HOH
HOH
268
A
HOH
84
6
HOH
HOH
269
A
HOH
85
6
HOH
HOH
270
A
HOH
86
6
HOH
HOH
271
A
HOH
87
6
HOH
HOH
272
A
HOH
88
6
HOH
HOH
273
A
HOH
89
6
HOH
HOH
274
A
HOH
90
6
HOH
HOH
275
A
HOH
91
6
HOH
HOH
276
A
HOH
92
6
HOH
HOH
277
A
HOH
93
6
HOH
HOH
278
A
HOH
94
6
HOH
HOH
279
A
HOH
95
6
HOH
HOH
280
A
HOH
96
6
HOH
HOH
281
A
HOH
97
6
HOH
HOH
282
A
HOH
98
6
HOH
HOH
283
A
HOH
99
6
HOH
HOH
284
A
HOH
100
6
HOH
HOH
285
A
HOH
101
6
HOH
HOH
286
A
HOH
102
6
HOH
HOH
287
A
HOH
103
6
HOH
HOH
288
A
HOH
104
6
HOH
HOH
289
A
HOH
105
6
HOH
HOH
290
A
HOH
106
6
HOH
HOH
291
A
HOH
107
6
HOH
HOH
292
A
HOH
108
6
HOH
HOH
293
A
HOH
109
6
HOH
HOH
294
A
HOH
110
6
HOH
HOH
295
A
HOH
111
6
HOH
HOH
296
A
HOH
112
6
HOH
HOH
297
A
HOH
113
6
HOH
HOH
298
A
HOH
114
6
HOH
HOH
299
A
HOH
115
6
HOH
HOH
300
A
HOH
116
6
HOH
HOH
301
A
HOH
117
6
HOH
HOH
302
A
HOH
118
6
HOH
HOH
303
A
HOH
119
6
HOH
HOH
304
A
HOH
120
6
HOH
HOH
305
A
HOH
121
6
HOH
HOH
306
A
HOH
122
6
HOH
HOH
307
A
HOH
123
6
HOH
HOH
308
A
HOH
124
6
HOH
HOH
309
A
HOH
125
6
HOH
HOH
310
A
HOH
126
6
HOH
HOH
311
A
HOH
127
6
HOH
HOH
312
A
55.660
3.000
3.000
47.840
47.840
Phaser MODE: MR_AUTO
n
1
-3
A
n
2
-2
A
n
3
-1
A
n
4
0
A
n
5
1
A
n
6
2
A
ASP
3
n
7
ASP
3
A
LYS
4
n
8
LYS
4
A
ASN
5
n
9
ASN
5
A
PHE
6
n
10
PHE
6
A
LEU
7
n
11
LEU
7
A
VAL
8
n
12
VAL
8
A
ILE
9
n
13
ILE
9
A
ASP
10
n
14
ASP
10
A
ASP
11
n
15
ASP
11
A
ASN
12
n
16
ASN
12
A
GLU
13
n
17
GLU
13
A
VAL
14
n
18
VAL
14
A
PHE
15
n
19
PHE
15
A
ALA
16
n
20
ALA
16
A
GLY
17
n
21
GLY
17
A
THR
18
n
22
THR
18
A
LEU
19
n
23
LEU
19
A
ALA
20
n
24
ALA
20
A
ARG
21
n
25
ARG
21
A
GLY
22
n
26
GLY
22
A
LEU
23
n
27
LEU
23
A
GLU
24
n
28
GLU
24
A
ARG
25
n
29
ARG
25
A
ARG
26
n
30
ARG
26
A
GLY
27
n
31
GLY
27
A
TYR
28
n
32
TYR
28
A
ALA
29
n
33
ALA
29
A
VAL
30
n
34
VAL
30
A
ARG
31
n
35
ARG
31
A
GLN
32
n
36
GLN
32
A
ALA
33
n
37
ALA
33
A
HIS
34
n
38
HIS
34
A
ASN
35
n
39
ASN
35
A
LYS
36
n
40
LYS
36
A
ASP
37
n
41
ASP
37
A
GLU
38
n
42
GLU
38
A
ALA
39
n
43
ALA
39
A
LEU
40
n
44
LEU
40
A
LYS
41
n
45
LYS
41
A
LEU
42
n
46
LEU
42
A
ALA
43
n
47
ALA
43
A
GLY
44
n
48
GLY
44
A
ALA
45
n
49
ALA
45
A
GLU
46
n
50
GLU
46
A
LYS
47
n
51
LYS
47
A
PHE
48
n
52
PHE
48
A
GLU
49
n
53
GLU
49
A
PHE
50
n
54
PHE
50
A
ILE
51
n
55
ILE
51
A
THR
52
n
56
THR
52
A
VAL
53
n
57
VAL
53
A
PHD
54
n
58
PHD
54
A
LEU
55
n
59
LEU
55
A
HIS
56
n
60
HIS
56
A
LEU
57
n
61
LEU
57
A
GLY
58
n
62
GLY
58
A
ASN
59
n
63
ASN
59
A
ASP
60
n
64
ASP
60
A
SER
61
n
65
SER
61
A
GLY
62
n
66
GLY
62
A
LEU
63
n
67
LEU
63
A
SER
64
n
68
SER
64
A
LEU
65
n
69
LEU
65
A
ILE
66
n
70
ILE
66
A
ALA
67
n
71
ALA
67
A
PRO
68
n
72
PRO
68
A
LEU
69
n
73
LEU
69
A
CYS
70
n
74
CYS
70
A
ASP
71
n
75
ASP
71
A
LEU
72
n
76
LEU
72
A
GLN
73
n
77
GLN
73
A
PRO
74
n
78
PRO
74
A
ASP
75
n
79
ASP
75
A
ALA
76
n
80
ALA
76
A
ARG
77
n
81
ARG
77
A
ILE
78
n
82
ILE
78
A
LEU
79
n
83
LEU
79
A
VAL
80
n
84
VAL
80
A
LEU
81
n
85
LEU
81
A
THR
82
n
86
THR
82
A
GLY
83
n
87
GLY
83
A
TYR
84
n
88
TYR
84
A
ALA
85
n
89
ALA
85
A
SER
86
n
90
SER
86
A
ILE
87
n
91
ILE
87
A
ALA
88
n
92
ALA
88
A
THR
89
n
93
THR
89
A
ALA
90
n
94
ALA
90
A
VAL
91
n
95
VAL
91
A
GLN
92
n
96
GLN
92
A
ALA
93
n
97
ALA
93
A
VAL
94
n
98
VAL
94
A
LYS
95
n
99
LYS
95
A
ASP
96
n
100
ASP
96
A
GLY
97
n
101
GLY
97
A
ALA
98
n
102
ALA
98
A
ASP
99
n
103
ASP
99
A
ASN
100
n
104
ASN
100
A
TYR
101
n
105
TYR
101
A
LEU
102
n
106
LEU
102
A
ALA
103
n
107
ALA
103
A
LYS
104
n
108
LYS
104
A
PRO
105
n
109
PRO
105
A
ALA
106
n
110
ALA
106
A
ASN
107
n
111
ASN
107
A
VAL
108
n
112
VAL
108
A
GLU
109
n
113
GLU
109
A
SER
110
n
114
SER
110
A
ILE
111
n
115
ILE
111
A
LEU
112
n
116
LEU
112
A
ALA
113
n
117
ALA
113
A
ALA
114
n
118
ALA
114
A
LEU
115
n
119
LEU
115
A
GLN
116
n
120
GLN
116
A
THR
117
n
121
THR
117
A
ASN
118
n
122
ASN
118
A
ALA
119
n
123
ALA
119
A
SER
120
n
124
SER
120
A
GLU
121
n
125
GLU
121
A
VAL
122
n
126
VAL
122
A
GLN
123
n
127
GLN
123
A
ALA
124
n
128
ALA
124
A
GLU
125
n
129
GLU
125
A
GLU
126
n
130
GLU
126
A
ALA
127
n
131
ALA
127
A
LEU
128
n
132
LEU
128
A
GLU
129
n
133
GLU
129
A
ASN
130
n
134
ASN
130
A
PRO
131
n
135
PRO
131
A
VAL
132
n
136
VAL
132
A
VAL
133
n
137
VAL
133
A
LEU
134
n
138
LEU
134
A
SER
135
n
139
SER
135
A
n
140
136
A
n
141
137
A
n
142
138
A
LEU
139
n
143
LEU
139
A
GLU
140
n
144
GLU
140
A
TRP
141
n
145
TRP
141
A
GLU
142
n
146
GLU
142
A
HIS
143
n
147
HIS
143
A
ILE
144
n
148
ILE
144
A
GLN
145
n
149
GLN
145
A
ARG
146
n
150
ARG
146
A
VAL
147
n
151
VAL
147
A
LEU
148
n
152
LEU
148
A
ALA
149
n
153
ALA
149
A
GLU
150
n
154
GLU
150
A
ASN
151
n
155
ASN
151
A
ASN
152
n
156
ASN
152
A
ASN
153
n
157
ASN
153
A
ASN
154
n
158
ASN
154
A
ILE
155
n
159
ILE
155
A
SER
156
n
160
SER
156
A
ALA
157
n
161
ALA
157
A
THR
158
n
162
THR
158
A
ALA
159
n
163
ALA
159
A
ARG
160
n
164
ARG
160
A
ALA
161
n
165
ALA
161
A
LEU
162
n
166
LEU
162
A
ASN
163
n
167
ASN
163
A
MET
164
n
168
MET
164
A
HIS
165
n
169
HIS
165
A
ARG
166
n
170
ARG
166
A
ARG
167
n
171
ARG
167
A
THR
168
n
172
THR
168
A
LEU
169
n
173
LEU
169
A
GLN
170
n
174
GLN
170
A
ARG
171
n
175
ARG
171
A
LYS
172
n
176
LYS
172
A
LEU
173
n
177
LEU
173
A
ALA
174
n
178
ALA
174
A
LYS
175
n
179
LYS
175
A
n
180
176
A
n
181
177
A
n
182
178
A
n
183
179
A
n
184
180
A
2.3526
-0.9046
-0.2636
2.1079
0.2811
2.4688
0.0634
0.0988
0.1076
0.0090
-0.0655
-0.2004
-0.0421
0.1288
0.0022
0.0385
-0.0098
0.0073
0.0675
0.0177
0.1033
refined
21.2989
10.6455
13.4674
X-RAY DIFFRACTION
2.3043
1.2781
0.0318
0.9541
-0.0023
0.0037
0.0236
0.0849
-0.0731
-0.0161
-0.0078
0.0134
0.0083
-0.0005
-0.0158
0.0835
0.0190
-0.0128
0.0622
-0.0046
0.0604
refined
8.8538
1.5338
13.4210
X-RAY DIFFRACTION
0.3381
-1.3207
1.9146
5.2773
-7.6056
10.9777
-0.0071
0.0023
-0.0367
-0.1008
-0.0132
-0.1113
0.1619
-0.0300
0.0203
0.0451
-0.0199
-0.1145
0.0433
-0.0461
0.5940
refined
4.0820
-22.7767
23.1890
X-RAY DIFFRACTION
A
3
A
47
X-RAY DIFFRACTION
1
A
48
A
135
X-RAY DIFFRACTION
2
A
139
A
175
X-RAY DIFFRACTION
3
author_and_software_defined_assembly
PISA
2
dimeric
6690
-127
14770
A
ASP
11
A
OD1
ASP
15
1_555
A
CA
181
B
CA
CA
1_555
A
PHD
54
A
OP2
PHD
58
1_555
147.8
A
ASP
11
A
OD1
ASP
15
1_555
A
CA
181
B
CA
CA
1_555
A
PHD
54
A
OD2
PHD
58
1_555
74.8
A
PHD
54
A
OP2
PHD
58
1_555
A
CA
181
B
CA
CA
1_555
A
PHD
54
A
OD2
PHD
58
1_555
74.6
A
ASP
11
A
OD1
ASP
15
1_555
A
CA
181
B
CA
CA
1_555
A
HIS
56
A
O
HIS
60
1_555
82.5
A
PHD
54
A
OP2
PHD
58
1_555
A
CA
181
B
CA
CA
1_555
A
HIS
56
A
O
HIS
60
1_555
82.5
A
PHD
54
A
OD2
PHD
58
1_555
A
CA
181
B
CA
CA
1_555
A
HIS
56
A
O
HIS
60
1_555
80.2
A
ASP
11
A
OD1
ASP
15
1_555
A
CA
181
B
CA
CA
1_555
A
CIT
182
C
O7
CIT
1_555
74.3
A
PHD
54
A
OP2
PHD
58
1_555
A
CA
181
B
CA
CA
1_555
A
CIT
182
C
O7
CIT
1_555
136.8
A
PHD
54
A
OD2
PHD
58
1_555
A
CA
181
B
CA
CA
1_555
A
CIT
182
C
O7
CIT
1_555
136.0
A
HIS
56
A
O
HIS
60
1_555
A
CA
181
B
CA
CA
1_555
A
CIT
182
C
O7
CIT
1_555
125.3
A
ASP
11
A
OD1
ASP
15
1_555
A
CA
181
B
CA
CA
1_555
A
CIT
182
C
O6
CIT
1_555
136.9
A
PHD
54
A
OP2
PHD
58
1_555
A
CA
181
B
CA
CA
1_555
A
CIT
182
C
O6
CIT
1_555
75.3
A
PHD
54
A
OD2
PHD
58
1_555
A
CA
181
B
CA
CA
1_555
A
CIT
182
C
O6
CIT
1_555
144.7
A
HIS
56
A
O
HIS
60
1_555
A
CA
181
B
CA
CA
1_555
A
CIT
182
C
O6
CIT
1_555
113.7
A
CIT
182
C
O7
CIT
1_555
A
CA
181
B
CA
CA
1_555
A
CIT
182
C
O6
CIT
1_555
63.7
A
ASP
11
A
OD1
ASP
15
1_555
A
CA
181
B
CA
CA
1_555
A
CIT
182
C
O1
CIT
1_555
82.8
A
PHD
54
A
OP2
PHD
58
1_555
A
CA
181
B
CA
CA
1_555
A
CIT
182
C
O1
CIT
1_555
116.5
A
PHD
54
A
OD2
PHD
58
1_555
A
CA
181
B
CA
CA
1_555
A
CIT
182
C
O1
CIT
1_555
141.7
A
HIS
56
A
O
HIS
60
1_555
A
CA
181
B
CA
CA
1_555
A
CIT
182
C
O1
CIT
1_555
66.3
A
CIT
182
C
O7
CIT
1_555
A
CA
181
B
CA
CA
1_555
A
CIT
182
C
O1
CIT
1_555
62.1
A
CIT
182
C
O6
CIT
1_555
A
CA
181
B
CA
CA
1_555
A
CIT
182
C
O1
CIT
1_555
69.9
A
ASP
11
A
OD1
ASP
15
1_555
A
CA
181
B
CA
CA
1_555
A
HOH
186
G
O
HOH
1_555
93.6
A
PHD
54
A
OP2
PHD
58
1_555
A
CA
181
B
CA
CA
1_555
A
HOH
186
G
O
HOH
1_555
89.8
A
PHD
54
A
OD2
PHD
58
1_555
A
CA
181
B
CA
CA
1_555
A
HOH
186
G
O
HOH
1_555
78.0
A
HIS
56
A
O
HIS
60
1_555
A
CA
181
B
CA
CA
1_555
A
HOH
186
G
O
HOH
1_555
158.1
A
CIT
182
C
O7
CIT
1_555
A
CA
181
B
CA
CA
1_555
A
HOH
186
G
O
HOH
1_555
73.5
A
CIT
182
C
O6
CIT
1_555
A
CA
181
B
CA
CA
1_555
A
HOH
186
G
O
HOH
1_555
83.9
A
CIT
182
C
O1
CIT
1_555
A
CA
181
B
CA
CA
1_555
A
HOH
186
G
O
HOH
1_555
134.8
A
PHD
54
ASPARTYL PHOSPHATE
A
PHD
58
ASP
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
-0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
6_555
-x,-x+y,-z+1/3
crystal symmetry operation
0.0000000000
0.0000000000
31.8066666667
A
O
ARG
31
A
O
ARG
35
A
N
VAL
8
A
N
VAL
12
A
N
LEU
7
A
N
LEU
11
A
O
THR
52
A
O
THR
56
A
N
ILE
51
A
N
ILE
55
A
O
LEU
79
A
O
LEU
83
A
N
VAL
80
A
N
VAL
84
A
O
LEU
102
A
O
LEU
106
A
N
LEU
57
A
N
LEU
61
A
O
ASP
60
A
O
ASP
64
1
A
CG
LYS
36
A
CG
LYS
40
1
Y
1
A
CD
LYS
36
A
CD
LYS
40
1
Y
1
A
CE
LYS
36
A
CE
LYS
40
1
Y
1
A
NZ
LYS
36
A
NZ
LYS
40
1
Y
1
A
CG
GLU
109
A
CG
GLU
113
1
Y
1
A
CD
GLU
109
A
CD
GLU
113
1
Y
1
A
OE1
GLU
109
A
OE1
GLU
113
1
Y
1
A
OE2
GLU
109
A
OE2
GLU
113
1
Y
1
A
CG
LEU
139
A
CG
LEU
143
1
Y
1
A
CD1
LEU
139
A
CD1
LEU
143
1
Y
1
A
CD2
LEU
139
A
CD2
LEU
143
1
Y
1
A
CG
GLU
142
A
CG
GLU
146
1
Y
1
A
CD
GLU
142
A
CD
GLU
146
1
Y
1
A
OE1
GLU
142
A
OE1
GLU
146
1
Y
1
A
OE2
GLU
142
A
OE2
GLU
146
1
Y
1
A
CG1
ILE
144
A
CG1
ILE
148
1
Y
1
A
CG2
ILE
144
A
CG2
ILE
148
1
Y
1
A
CD1
ILE
144
A
CD1
ILE
148
1
Y
1
A
CG
GLU
150
A
CG
GLU
154
1
Y
1
A
CD
GLU
150
A
CD
GLU
154
1
Y
1
A
OE1
GLU
150
A
OE1
GLU
154
1
Y
1
A
OE2
GLU
150
A
OE2
GLU
154
1
Y
1
A
CG
ARG
160
A
CG
ARG
164
1
Y
1
A
CD
ARG
160
A
CD
ARG
164
1
Y
1
A
NE
ARG
160
A
NE
ARG
164
1
Y
1
A
CZ
ARG
160
A
CZ
ARG
164
1
Y
1
A
NH1
ARG
160
A
NH1
ARG
164
1
Y
1
A
NH2
ARG
160
A
NH2
ARG
164
1
Y
1
A
CG
ARG
166
A
CG
ARG
170
1
Y
1
A
CD
ARG
166
A
CD
ARG
170
1
Y
1
A
NE
ARG
166
A
NE
ARG
170
1
Y
1
A
CZ
ARG
166
A
CZ
ARG
170
1
Y
1
A
NH1
ARG
166
A
NH1
ARG
170
1
Y
1
A
NH2
ARG
166
A
NH2
ARG
170
1
Y
1
A
CG
ARG
167
A
CG
ARG
171
1
Y
1
A
CD
ARG
167
A
CD
ARG
171
1
Y
1
A
NE
ARG
167
A
NE
ARG
171
1
Y
1
A
CZ
ARG
167
A
CZ
ARG
171
1
Y
1
A
NH1
ARG
167
A
NH1
ARG
171
1
Y
1
A
NH2
ARG
167
A
NH2
ARG
171
1
Y
1
A
CG
ARG
171
A
CG
ARG
175
1
Y
1
A
CD
ARG
171
A
CD
ARG
175
1
Y
1
A
NE
ARG
171
A
NE
ARG
175
1
Y
1
A
CZ
ARG
171
A
CZ
ARG
175
1
Y
1
A
NH1
ARG
171
A
NH1
ARG
175
1
Y
1
A
NH2
ARG
171
A
NH2
ARG
175
1
Y
1
A
CG
LYS
175
A
CG
LYS
179
1
Y
1
A
CD
LYS
175
A
CD
LYS
179
1
Y
1
A
CE
LYS
175
A
CE
LYS
179
1
Y
1
A
NZ
LYS
175
A
NZ
LYS
179
1
Y
1
A
GLY
-3
A
GLY
1
1
Y
1
A
PRO
-2
A
PRO
2
1
Y
1
A
GLY
-1
A
GLY
3
1
Y
1
A
SER
0
A
SER
4
1
Y
1
A
MET
1
A
MET
5
1
Y
1
A
SER
2
A
SER
6
1
Y
1
A
VAL
136
A
VAL
140
1
Y
1
A
ASP
137
A
ASP
141
1
Y
1
A
ARG
138
A
ARG
142
1
Y
1
A
LYS
176
A
LYS
180
1
Y
1
A
PRO
177
A
PRO
181
1
Y
1
A
VAL
178
A
VAL
182
1
Y
1
A
ARG
179
A
ARG
183
1
Y
1
A
GLN
180
A
GLN
184
1
Y
1
A
A
O
O
HOH
HOH
217
269
2.17
73.750
24.9592
4.820
-0.8100
-0.4100
0.0000
-0.8100
0.0000
1.2200
0.9410
0.9250
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : RESIDUAL ONLY
0.2395
0.2064
0.2081
1.7000
50.0000
976
19018
5.1000
99.1200
0.2348
0.1983
1.000
0.300
0.8420
4.5910
0.0740
0.1222
0.1171
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.1170
0.8000
0.8000
1.4000
1zy2
MAXIMUM LIKELIHOOD
MASK
1.7000
50.0000
127
1418
30
0
1261
0.015
0.021
1319
1.486
1.983
1803
5.133
5.000
174
36.372
25.932
59
12.393
15.000
202
13.979
15.000
6
0.102
0.200
214
0.006
0.020
996
0.794
1.500
853
1.399
2.000
1350
2.415
3.000
466
3.921
4.500
450
0.3330
0.2550
1.7440
87
1299
1386
20
99.3500
25.389
1.700
50
3RQI
19149
19044
-3.000
0.049
1
23.220
6.2
99.500
0.509
1.700
1.740
3.760
7049
1393
1390
5.1
99.800
0.355
1.740
1.790
5.220
7598
1337
99.900
0.240
1.790
1.840
6.530
7835
1355
99.900
0.199
1.840
1.900
8.450
7540
1270
99.700
0.182
1.900
1.960
10.390
6731
1194
97.200
0.121
1.960
2.030
13.160
7397
1213
100.000
0.117
2.030
2.110
15.170
6727
1144
99.200
0.082
2.110
2.190
20.070
7081
1126
100.000
0.082
2.190
2.290
21.130
6168
1065
96.800
0.064
2.290
2.400
24.680
6740
1033
100.000
0.058
2.400
2.530
27.550
6459
973
99.900
0.054
2.530
2.690
31.030
6276
940
100.000
0.045
2.690
2.870
35.800
6164
892
100.000
0.040
2.870
3.100
40.720
5765
819
100.000
0.034
3.100
3.400
46.500
5344
765
100.000
0.032
3.400
3.800
50.690
4518
684
99.100
0.028
3.800
4.390
54.420
4069
622
99.000
0.022
4.390
5.380
57.110
3730
545
99.800
0.022
5.380
7.600
54.480
2875
418
100.000
0.020
7.600
57.650
1545
259
98.900
data scaling
Wolfgang Kabsch
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html
XSCALE
package
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
Wed Jun 24 14:00:05 2009
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
2.1.4
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
data reduction
XDS
Crystal structure of a response regulator protein from Burkholderia pseudomallei with a phosphorylated aspartic acid, calcium ion and citrate
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
5
N
N
6
N
N
A
ASN
12
A
ASN
16
HELX_P
A
ARG
26
A
ARG
30
1
1
15
A
ASN
35
A
ASN
39
HELX_P
A
GLY
44
A
GLY
48
1
2
10
A
LEU
65
A
LEU
69
HELX_P
A
GLN
73
A
GLN
77
1
3
9
A
SER
86
A
SER
90
HELX_P
A
GLY
97
A
GLY
101
1
4
12
A
ASN
107
A
ASN
111
HELX_P
A
LEU
115
A
LEU
119
1
5
9
A
ASN
118
A
ASN
122
HELX_P
A
ASN
130
A
ASN
134
1
6
13
A
LEU
139
A
LEU
143
HELX_P
A
ASN
151
A
ASN
155
1
7
13
A
ASN
154
A
ASN
158
HELX_P
A
ASN
163
A
ASN
167
1
8
10
A
HIS
165
A
HIS
169
HELX_P
A
ALA
174
A
ALA
178
1
9
10
covale
1.344
both
A
VAL
53
A
C
VAL
57
1_555
A
PHD
54
A
N
PHD
58
1_555
covale
1.332
both
A
PHD
54
A
C
PHD
58
1_555
A
LEU
55
A
N
LEU
59
1_555
metalc
2.344
A
ASP
11
A
OD1
ASP
15
1_555
A
CA
181
B
CA
CA
1_555
metalc
2.267
A
PHD
54
A
OP2
PHD
58
1_555
A
CA
181
B
CA
CA
1_555
metalc
2.432
A
PHD
54
A
OD2
PHD
58
1_555
A
CA
181
B
CA
CA
1_555
metalc
2.421
A
HIS
56
A
O
HIS
60
1_555
A
CA
181
B
CA
CA
1_555
metalc
2.480
A
CA
181
B
CA
CA
1_555
A
CIT
182
C
O7
CIT
1_555
metalc
2.525
A
CA
181
B
CA
CA
1_555
A
CIT
182
C
O6
CIT
1_555
metalc
2.561
A
CA
181
B
CA
CA
1_555
A
CIT
182
C
O1
CIT
1_555
metalc
2.391
A
CA
181
B
CA
CA
1_555
A
HOH
186
G
O
HOH
1_555
TRANSCRIPTION
Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, SSGCID, response regulator protein, phosphorylated aspartic acid, calcium ion, TRANSCRIPTION
A
LYS
104
A
LYS
108
1
A
PRO
105
A
PRO
109
-1.41
Q3JXA5_BURP1
UNP
1
1
Q3JXA5
MSDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVDLHLGNDSGLSLIAPLCDLQPDARILV
LTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEVQAEEALENPVVLSVDRLEWEHIQRVLAENNNNISATAR
ALNMHRRTLQRKLAKKPVRQ
1
180
3RQI
1
180
Q3JXA5
A
1
5
184
1
expression tag
GLY
-3
3RQI
A
Q3JXA5
UNP
1
1
expression tag
PRO
-2
3RQI
A
Q3JXA5
UNP
2
1
expression tag
GLY
-1
3RQI
A
Q3JXA5
UNP
3
1
expression tag
SER
0
3RQI
A
Q3JXA5
UNP
4
5
2
parallel
parallel
parallel
parallel
anti-parallel
A
ALA
29
A
ALA
33
A
ALA
33
A
ALA
37
A
ASN
5
A
ASN
9
A
ILE
9
A
ILE
13
A
PHE
50
A
PHE
54
A
VAL
53
A
VAL
57
A
ARG
77
A
ARG
81
A
THR
82
A
THR
86
A
ASN
100
A
ASN
104
A
ALA
103
A
ALA
107
A
HIS
56
A
HIS
60
A
LEU
57
A
LEU
61
A
ASP
60
A
ASP
64
A
SER
61
A
SER
65
BINDING SITE FOR RESIDUE CA A 181
A
CA
181
Software
5
BINDING SITE FOR RESIDUE CIT A 182
A
CIT
182
Software
9
BINDING SITE FOR RESIDUE SO4 A 183
A
SO4
183
Software
7
BINDING SITE FOR RESIDUE SO4 A 184
A
SO4
184
Software
7
BINDING SITE FOR RESIDUE GOL A 185
A
GOL
185
Software
6
A
ASP
11
A
ASP
15
5
1_555
A
PHD
54
A
PHD
58
5
1_555
A
HIS
56
A
HIS
60
5
1_555
A
CIT
182
C
CIT
5
1_555
A
HOH
186
G
HOH
5
1_555
A
ASP
11
A
ASP
15
9
1_555
A
ASN
12
A
ASN
16
9
1_555
A
PHD
54
A
PHD
58
9
1_555
A
HIS
56
A
HIS
60
9
1_555
A
GLY
58
A
GLY
62
9
1_555
A
TYR
84
A
TYR
88
9
1_555
A
CA
181
B
CA
9
1_555
A
HOH
186
G
HOH
9
1_555
A
HOH
198
G
HOH
9
1_555
A
ARG
77
A
ARG
81
7
1_555
A
LYS
95
A
LYS
99
7
6_555
A
THR
117
A
THR
121
7
1_555
A
ASN
118
A
ASN
122
7
1_555
A
GLU
121
A
GLU
125
7
1_555
A
HOH
193
G
HOH
7
1_555
A
HOH
223
G
HOH
7
1_555
A
ALA
85
A
ALA
89
7
1_555
A
SER
86
A
SER
90
7
1_555
A
ILE
87
A
ILE
91
7
1_555
A
HIS
165
A
HIS
169
7
1_555
A
ARG
166
A
ARG
170
7
1_555
A
ARG
167
A
ARG
171
7
1_555
A
HOH
278
G
HOH
7
1_555
A
CYS
70
A
CYS
74
6
1_555
A
GLN
73
A
GLN
77
6
1_555
A
PRO
74
A
PRO
78
6
1_555
A
ALA
76
A
ALA
80
6
1_555
A
GLY
97
A
GLY
101
6
1_555
A
ASP
99
A
ASP
103
6
1_555
152
P 31 2 1