0.013103 0.000000 0.000000 0.000000 0.009787 0.000000 0.000000 0.000000 0.007191 0.00000 0.00000 0.00000 Srinivasan, S. Vyas, N.K. Baker, M.L. Quiocho, F.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 76.320 102.181 139.062 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H17 N O3 S 207.290 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID N-CYCLOHEXYLTAURINE; CHES non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C Y 128 N C Y 129 N N Y 130 N C Y 131 N C Y 132 N N N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N N N 148 S C N 149 N C N 150 N O N 151 S C N 152 N C N 153 N C N 154 N C N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N N N 170 S C N 171 N C N 172 N O N 173 N C N 174 N C N 175 N C N 176 N C N 177 N O N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N N N 192 S C N 193 N C N 194 N O N 195 N C N 196 N C N 197 N C N 198 N C N 199 N N N 200 N O N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N N N 217 S C N 218 N C N 219 N O N 220 N C N 221 N C N 222 N S N 223 N C N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N C N 237 N C N 238 N C N 239 N C N 240 N N N 241 N C N 242 N C N 243 N S N 244 N O N 245 N O N 246 N O N 247 N C N 248 N C N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N N N 267 S C N 268 N C N 269 N O N 270 N C Y 271 N C Y 272 N C Y 273 N C Y 274 N C Y 275 N C Y 276 N C N 277 N O N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N N N 290 S C N 291 N C N 292 N O N 293 N C N 294 N C N 295 N C N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N N N 307 S C N 308 N C N 309 N O N 310 N C N 311 N O N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N S N 321 N O N 322 N O N 323 N O N 324 N O N 325 N N N 326 S C N 327 N C N 328 N O N 329 R C N 330 N O N 331 N C N 332 N O N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N N N 343 S C N 344 N C N 345 N O N 346 N C Y 347 N C Y 348 N C Y 349 N C Y 350 N N Y 351 N C Y 352 N C Y 353 N C Y 354 N C Y 355 N C N 356 N O N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N N N 370 S C N 371 N C N 372 N O N 373 N C Y 374 N C Y 375 N C Y 376 N C Y 377 N C Y 378 N C Y 379 N C N 380 N O N 381 N O N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N N N 394 S C N 395 N C N 396 N O N 397 N C N 398 N C N 399 N C N 400 N O N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N doub N 246 N doub N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N doub N 261 N sing N 262 N sing N 263 N sing N 264 N sing Y 265 N doub Y 266 N sing Y 267 N sing N 268 N sing Y 269 N doub N 270 N sing Y 271 N doub N 272 N sing Y 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N doub N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N doub N 308 N doub N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N doub N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N doub N 334 N sing N 335 N sing N 336 N sing N 337 N sing Y 338 N doub Y 339 N sing Y 340 N sing N 341 N sing Y 342 N doub Y 343 N sing Y 344 N sing N 345 N sing Y 346 N sing Y 347 N doub N 348 N sing Y 349 N doub N 350 N sing Y 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N doub N 362 N sing N 363 N sing N 364 N sing N 365 N sing Y 366 N doub Y 367 N sing Y 368 N sing N 369 N sing Y 370 N doub N 371 N sing Y 372 N doub N 373 N sing Y 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N doub N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 412 14 21 10.1016/j.jmb.2011.07.014 21787787 Crystal structure of the cytoplasmic N-terminal domain of subunit I, a homolog of subunit a, of V-ATPase. 2011 10.2210/pdb3rrk/pdb pdb_00003rrk 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 mirrrors CCD 2010-08-05 ADSC QUANTUM 315 Rosenbaum-Rock high-resolution double-crystal monochromator. LN2 cooled first crystal, sagittal focusing 2nd crystal SINGLE WAVELENGTH M x-ray 1 0.97926 1.0 19-ID APS 0.97926 SYNCHROTRON APS BEAMLINE 19-ID 38900.340 V-type ATPase 116 kDa subunit UNP residues 1-344 1 man polymer 207.290 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID 2 syn non-polymer 96.063 SULFATE ION 1 syn non-polymer 18.015 water 38 nat water no no GSAGSGTIDDDDKMEKLIVAGPKRLARELLAELQKAGVVHIDPLRPDELGEYRLSPTEEAELKRWEAVVSQAEQSLTVVG LATVPSSKPFTGSLEEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLAALAHGLDESPRLGVIPFLVAKPEE LEAVRKALQEALADRFVLEAEPLENQLAALVVVKRSELEAARSSLSRLGLAELRFPGAYGAMPLGKAAARMKERARLAPE ELVGIREEVARLSRESGEALIALWTRAKDEVARYKAVADMAAGKYGAALMGWVPQKAKGKVEEALGRLRDQIVYTFEPVD EHHESHQVPVTLENPAWAKPFELLHGFLNTPAYGSHD GSAGSGTIDDDDKMEKLIVAGPKRLARELLAELQKAGVVHIDPLRPDELGEYRLSPTEEAELKRWEAVVSQAEQSLTVVG LATVPSSKPFTGSLEEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLAALAHGLDESPRLGVIPFLVAKPEE LEAVRKALQEALADRFVLEAEPLENQLAALVVVKRSELEAARSSLSRLGLAELRFPGAYGAMPLGKAAARMKERARLAPE ELVGIREEVARLSRESGEALIALWTRAKDEVARYKAVADMAAGKYGAALMGWVPQKAKGKVEEALGRLRDQIVYTFEPVD EHHESHQVPVTLENPAWAKPFELLHGFLNTPAYGSHD A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n DSM 1279 sample 35948 Mrub_0956 504728 Meiothermus ruber 469008 Escherichia coli BL21(DE3) Plasmid pET44-Ek/LIC 1 3.60 65.81 VAPOR DIFFUSION, HANGING DROP 9.5 0.2 M lithium sulfate, 0.8 M sodium-potassium trtarate, 0.1 M CHES, pH 9.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 chem_comp_atom chem_comp_bond database_2 pdbx_struct_special_symmetry struct_site pdbx_initial_refinement_model repository Initial release Database references Data collection Database references Derived calculations Refinement description 1 0 2011-08-10 1 1 2011-11-30 1 2 2024-02-28 1 3 2024-04-03 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2011-04-29 REL REL NHE 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID SO4 SULFATE ION HOH water SAD phasing Other experimental model NHE 540 2 NHE NHE 540 A NHE 520 2 NHE NHE 520 A SO4 1 3 SO4 SO4 345 A HOH 1 4 HOH HOH 346 A HOH 2 4 HOH HOH 347 A HOH 3 4 HOH HOH 348 A HOH 4 4 HOH HOH 349 A HOH 5 4 HOH HOH 350 A HOH 6 4 HOH HOH 351 A HOH 7 4 HOH HOH 352 A HOH 8 4 HOH HOH 353 A HOH 9 4 HOH HOH 354 A HOH 10 4 HOH HOH 355 A HOH 11 4 HOH HOH 356 A HOH 12 4 HOH HOH 357 A HOH 13 4 HOH HOH 358 A HOH 14 4 HOH HOH 359 A HOH 15 4 HOH HOH 360 A HOH 16 4 HOH HOH 361 A HOH 17 4 HOH HOH 362 A HOH 18 4 HOH HOH 363 A HOH 19 4 HOH HOH 364 A HOH 20 4 HOH HOH 365 A HOH 21 4 HOH HOH 366 A HOH 22 4 HOH HOH 367 A HOH 23 4 HOH HOH 368 A HOH 24 4 HOH HOH 369 A HOH 25 4 HOH HOH 370 A HOH 26 4 HOH HOH 371 A HOH 27 4 HOH HOH 372 A HOH 28 4 HOH HOH 373 A HOH 29 4 HOH HOH 374 A HOH 30 4 HOH HOH 375 A HOH 31 4 HOH HOH 376 A HOH 32 4 HOH HOH 377 A HOH 33 4 HOH HOH 378 A HOH 34 4 HOH HOH 379 A HOH 35 4 HOH HOH 380 A HOH 36 4 HOH HOH 381 A HOH 37 4 HOH HOH 382 A HOH 38 4 HOH HOH 383 A n 1 -12 A n 2 -11 A n 3 -10 A n 4 -9 A n 5 -8 A n 6 -7 A n 7 -6 A n 8 -5 A n 9 -4 A n 10 -3 A n 11 -2 A n 12 -1 A n 13 0 A MET 1 n 14 MET 1 A GLU 2 n 15 GLU 2 A LYS 3 n 16 LYS 3 A LEU 4 n 17 LEU 4 A ILE 5 n 18 ILE 5 A VAL 6 n 19 VAL 6 A ALA 7 n 20 ALA 7 A GLY 8 n 21 GLY 8 A PRO 9 n 22 PRO 9 A LYS 10 n 23 LYS 10 A ARG 11 n 24 ARG 11 A LEU 12 n 25 LEU 12 A ALA 13 n 26 ALA 13 A ARG 14 n 27 ARG 14 A GLU 15 n 28 GLU 15 A LEU 16 n 29 LEU 16 A LEU 17 n 30 LEU 17 A ALA 18 n 31 ALA 18 A GLU 19 n 32 GLU 19 A LEU 20 n 33 LEU 20 A GLN 21 n 34 GLN 21 A LYS 22 n 35 LYS 22 A ALA 23 n 36 ALA 23 A GLY 24 n 37 GLY 24 A VAL 25 n 38 VAL 25 A VAL 26 n 39 VAL 26 A HIS 27 n 40 HIS 27 A ILE 28 n 41 ILE 28 A ASP 29 n 42 ASP 29 A PRO 30 n 43 PRO 30 A LEU 31 n 44 LEU 31 A ARG 32 n 45 ARG 32 A PRO 33 n 46 PRO 33 A ASP 34 n 47 ASP 34 A GLU 35 n 48 GLU 35 A LEU 36 n 49 LEU 36 A GLY 37 n 50 GLY 37 A GLU 38 n 51 GLU 38 A TYR 39 n 52 TYR 39 A ARG 40 n 53 ARG 40 A LEU 41 n 54 LEU 41 A SER 42 n 55 SER 42 A PRO 43 n 56 PRO 43 A THR 44 n 57 THR 44 A GLU 45 n 58 GLU 45 A GLU 46 n 59 GLU 46 A ALA 47 n 60 ALA 47 A GLU 48 n 61 GLU 48 A LEU 49 n 62 LEU 49 A LYS 50 n 63 LYS 50 A ARG 51 n 64 ARG 51 A TRP 52 n 65 TRP 52 A GLU 53 n 66 GLU 53 A ALA 54 n 67 ALA 54 A VAL 55 n 68 VAL 55 A VAL 56 n 69 VAL 56 A SER 57 n 70 SER 57 A GLN 58 n 71 GLN 58 A ALA 59 n 72 ALA 59 A GLU 60 n 73 GLU 60 A GLN 61 n 74 GLN 61 A SER 62 n 75 SER 62 A LEU 63 n 76 LEU 63 A THR 64 n 77 THR 64 A VAL 65 n 78 VAL 65 A VAL 66 n 79 VAL 66 A GLY 67 n 80 GLY 67 A LEU 68 n 81 LEU 68 A ALA 69 n 82 ALA 69 A THR 70 n 83 THR 70 A VAL 71 n 84 VAL 71 A PRO 72 n 85 PRO 72 A SER 73 n 86 SER 73 A SER 74 n 87 SER 74 A LYS 75 n 88 LYS 75 A PRO 76 n 89 PRO 76 A PHE 77 n 90 PHE 77 A THR 78 n 91 THR 78 A GLY 79 n 92 GLY 79 A SER 80 n 93 SER 80 A LEU 81 n 94 LEU 81 A GLU 82 n 95 GLU 82 A GLU 83 n 96 GLU 83 A ALA 84 n 97 ALA 84 A GLU 85 n 98 GLU 85 A ALA 86 n 99 ALA 86 A VAL 87 n 100 VAL 87 A LEU 88 n 101 LEU 88 A ARG 89 n 102 ARG 89 A PRO 90 n 103 PRO 90 A VAL 91 n 104 VAL 91 A ALA 92 n 105 ALA 92 A SER 93 n 106 SER 93 A ARG 94 n 107 ARG 94 A ALA 95 n 108 ALA 95 A GLU 96 n 109 GLU 96 A VAL 97 n 110 VAL 97 A LEU 98 n 111 LEU 98 A GLY 99 n 112 GLY 99 A LYS 100 n 113 LYS 100 A GLU 101 n 114 GLU 101 A ARG 102 n 115 ARG 102 A ALA 103 n 116 ALA 103 A ALA 104 n 117 ALA 104 A LEU 105 n 118 LEU 105 A GLU 106 n 119 GLU 106 A GLU 107 n 120 GLU 107 A GLU 108 n 121 GLU 108 A ILE 109 n 122 ILE 109 A GLN 110 n 123 GLN 110 A THR 111 n 124 THR 111 A ILE 112 n 125 ILE 112 A GLU 113 n 126 GLU 113 A LEU 114 n 127 LEU 114 A PHE 115 n 128 PHE 115 A GLY 116 n 129 GLY 116 A LYS 117 n 130 LYS 117 A ALA 118 n 131 ALA 118 A ALA 119 n 132 ALA 119 A GLU 120 n 133 GLU 120 A LYS 121 n 134 LYS 121 A LEU 122 n 135 LEU 122 A ALA 123 n 136 ALA 123 A ALA 124 n 137 ALA 124 A LEU 125 n 138 LEU 125 A ALA 126 n 139 ALA 126 A HIS 127 n 140 HIS 127 A GLY 128 n 141 GLY 128 A LEU 129 n 142 LEU 129 A ASP 130 n 143 ASP 130 A GLU 131 n 144 GLU 131 A SER 132 n 145 SER 132 A PRO 133 n 146 PRO 133 A ARG 134 n 147 ARG 134 A LEU 135 n 148 LEU 135 A GLY 136 n 149 GLY 136 A VAL 137 n 150 VAL 137 A ILE 138 n 151 ILE 138 A PRO 139 n 152 PRO 139 A PHE 140 n 153 PHE 140 A LEU 141 n 154 LEU 141 A VAL 142 n 155 VAL 142 A ALA 143 n 156 ALA 143 A LYS 144 n 157 LYS 144 A PRO 145 n 158 PRO 145 A GLU 146 n 159 GLU 146 A GLU 147 n 160 GLU 147 A LEU 148 n 161 LEU 148 A GLU 149 n 162 GLU 149 A ALA 150 n 163 ALA 150 A VAL 151 n 164 VAL 151 A ARG 152 n 165 ARG 152 A LYS 153 n 166 LYS 153 A ALA 154 n 167 ALA 154 A LEU 155 n 168 LEU 155 A GLN 156 n 169 GLN 156 A GLU 157 n 170 GLU 157 A ALA 158 n 171 ALA 158 A LEU 159 n 172 LEU 159 A ALA 160 n 173 ALA 160 A ASP 161 n 174 ASP 161 A ARG 162 n 175 ARG 162 A PHE 163 n 176 PHE 163 A VAL 164 n 177 VAL 164 A LEU 165 n 178 LEU 165 A GLU 166 n 179 GLU 166 A ALA 167 n 180 ALA 167 A GLU 168 n 181 GLU 168 A PRO 169 n 182 PRO 169 A LEU 170 n 183 LEU 170 A GLU 171 n 184 GLU 171 A ASN 172 n 185 ASN 172 A GLN 173 n 186 GLN 173 A LEU 174 n 187 LEU 174 A ALA 175 n 188 ALA 175 A ALA 176 n 189 ALA 176 A LEU 177 n 190 LEU 177 A VAL 178 n 191 VAL 178 A VAL 179 n 192 VAL 179 A VAL 180 n 193 VAL 180 A LYS 181 n 194 LYS 181 A ARG 182 n 195 ARG 182 A SER 183 n 196 SER 183 A GLU 184 n 197 GLU 184 A LEU 185 n 198 LEU 185 A GLU 186 n 199 GLU 186 A ALA 187 n 200 ALA 187 A ALA 188 n 201 ALA 188 A ARG 189 n 202 ARG 189 A SER 190 n 203 SER 190 A SER 191 n 204 SER 191 A LEU 192 n 205 LEU 192 A SER 193 n 206 SER 193 A ARG 194 n 207 ARG 194 A LEU 195 n 208 LEU 195 A GLY 196 n 209 GLY 196 A LEU 197 n 210 LEU 197 A ALA 198 n 211 ALA 198 A GLU 199 n 212 GLU 199 A LEU 200 n 213 LEU 200 A ARG 201 n 214 ARG 201 A PHE 202 n 215 PHE 202 A PRO 203 n 216 PRO 203 A GLY 204 n 217 GLY 204 A ALA 205 n 218 ALA 205 A TYR 206 n 219 TYR 206 A GLY 207 n 220 GLY 207 A ALA 208 n 221 ALA 208 A MET 209 n 222 MET 209 A PRO 210 n 223 PRO 210 A LEU 211 n 224 LEU 211 A GLY 212 n 225 GLY 212 A LYS 213 n 226 LYS 213 A ALA 214 n 227 ALA 214 A ALA 215 n 228 ALA 215 A ALA 216 n 229 ALA 216 A ARG 217 n 230 ARG 217 A MET 218 n 231 MET 218 A LYS 219 n 232 LYS 219 A GLU 220 n 233 GLU 220 A ARG 221 n 234 ARG 221 A ALA 222 n 235 ALA 222 A ARG 223 n 236 ARG 223 A LEU 224 n 237 LEU 224 A ALA 225 n 238 ALA 225 A PRO 226 n 239 PRO 226 A GLU 227 n 240 GLU 227 A GLU 228 n 241 GLU 228 A LEU 229 n 242 LEU 229 A VAL 230 n 243 VAL 230 A GLY 231 n 244 GLY 231 A ILE 232 n 245 ILE 232 A ARG 233 n 246 ARG 233 A GLU 234 n 247 GLU 234 A GLU 235 n 248 GLU 235 A VAL 236 n 249 VAL 236 A ALA 237 n 250 ALA 237 A ARG 238 n 251 ARG 238 A LEU 239 n 252 LEU 239 A SER 240 n 253 SER 240 A ARG 241 n 254 ARG 241 A GLU 242 n 255 GLU 242 A SER 243 n 256 SER 243 A GLY 244 n 257 GLY 244 A GLU 245 n 258 GLU 245 A ALA 246 n 259 ALA 246 A LEU 247 n 260 LEU 247 A ILE 248 n 261 ILE 248 A ALA 249 n 262 ALA 249 A LEU 250 n 263 LEU 250 A TRP 251 n 264 TRP 251 A THR 252 n 265 THR 252 A ARG 253 n 266 ARG 253 A ALA 254 n 267 ALA 254 A LYS 255 n 268 LYS 255 A ASP 256 n 269 ASP 256 A GLU 257 n 270 GLU 257 A VAL 258 n 271 VAL 258 A ALA 259 n 272 ALA 259 A ARG 260 n 273 ARG 260 A TYR 261 n 274 TYR 261 A LYS 262 n 275 LYS 262 A ALA 263 n 276 ALA 263 A VAL 264 n 277 VAL 264 A ALA 265 n 278 ALA 265 A ASP 266 n 279 ASP 266 A MET 267 n 280 MET 267 A ALA 268 n 281 ALA 268 A ALA 269 n 282 ALA 269 A GLY 270 n 283 GLY 270 A LYS 271 n 284 LYS 271 A TYR 272 n 285 TYR 272 A GLY 273 n 286 GLY 273 A ALA 274 n 287 ALA 274 A ALA 275 n 288 ALA 275 A LEU 276 n 289 LEU 276 A MET 277 n 290 MET 277 A GLY 278 n 291 GLY 278 A TRP 279 n 292 TRP 279 A VAL 280 n 293 VAL 280 A PRO 281 n 294 PRO 281 A GLN 282 n 295 GLN 282 A LYS 283 n 296 LYS 283 A ALA 284 n 297 ALA 284 A LYS 285 n 298 LYS 285 A GLY 286 n 299 GLY 286 A LYS 287 n 300 LYS 287 A VAL 288 n 301 VAL 288 A GLU 289 n 302 GLU 289 A GLU 290 n 303 GLU 290 A ALA 291 n 304 ALA 291 A LEU 292 n 305 LEU 292 A GLY 293 n 306 GLY 293 A ARG 294 n 307 ARG 294 A LEU 295 n 308 LEU 295 A ARG 296 n 309 ARG 296 A ASP 297 n 310 ASP 297 A GLN 298 n 311 GLN 298 A ILE 299 n 312 ILE 299 A VAL 300 n 313 VAL 300 A TYR 301 n 314 TYR 301 A n 315 302 A n 316 303 A n 317 304 A n 318 305 A n 319 306 A n 320 307 A n 321 308 A n 322 309 A n 323 310 A n 324 311 A n 325 312 A n 326 313 A n 327 314 A n 328 315 A n 329 316 A n 330 317 A n 331 318 A n 332 319 A n 333 320 A n 334 321 A n 335 322 A n 336 323 A n 337 324 A n 338 325 A n 339 326 A n 340 327 A n 341 328 A n 342 329 A n 343 330 A n 344 331 A n 345 332 A n 346 333 A n 347 334 A n 348 335 A n 349 336 A n 350 337 A n 351 338 A n 352 339 A n 353 340 A n 354 341 A n 355 342 A n 356 343 A n 357 344 A 0.8201 -0.1586 -0.0521 -0.0037 -0.0993 0.8834 -0.3550 0.6884 1.6540 0.4888 0.2107 -0.2734 -1.6628 -0.6006 -0.0047 0.5062 -0.0905 -0.2273 0.6347 0.3390 0.6862 refined 15.4195 -12.5647 102.0961 X-RAY DIFFRACTION 0.5258 -0.7071 -0.1618 0.6642 0.1067 0.8878 1.0155 -0.3006 0.2725 -0.1494 -0.6416 -0.2077 -1.4884 -0.5795 -0.0002 1.1780 0.0664 0.1051 0.6973 0.2032 0.6412 refined 12.8093 -13.1495 109.1321 X-RAY DIFFRACTION 0.9480 -0.9723 -1.4199 0.7306 0.5656 1.8879 -0.1333 -0.1126 -0.0603 0.5724 -0.5477 -0.0709 0.7177 -0.0170 0.0006 0.6173 0.0928 0.0632 0.5981 0.0409 0.4718 refined 16.2771 -12.4430 84.5784 X-RAY DIFFRACTION 0.2909 -0.9172 0.4121 2.5554 -1.7082 3.0444 -0.0995 -0.3978 0.3994 0.3820 0.1721 0.0259 -0.2270 -0.3772 -0.0003 0.2790 0.1696 -0.0050 0.4977 -0.0760 0.3367 refined 14.1463 10.1380 75.2261 X-RAY DIFFRACTION 5.6138 2.6161 -2.9852 2.1313 -1.6031 5.9776 1.1131 0.5187 1.7352 0.6466 -0.1277 0.5767 -1.7552 -1.2934 0.1649 0.4941 0.0502 -0.0878 0.2166 0.1258 0.5410 refined 38.6091 31.7951 59.4192 X-RAY DIFFRACTION 3.6488 -0.5788 0.7485 2.2348 -3.0246 3.7792 0.0397 0.3736 0.5159 -0.3903 -0.3863 -0.3271 -0.7291 0.5493 0.0004 0.7024 -0.1659 -0.0472 0.5697 0.1288 0.6485 refined 56.1924 33.8664 53.9360 X-RAY DIFFRACTION 0.5659 -0.2231 0.2799 0.2038 -0.5644 1.4063 0.2347 0.2733 -1.2243 -0.4735 -0.2498 -0.1223 0.3769 0.1823 0.0012 0.6579 -0.1474 -0.0422 0.5443 0.0785 0.6479 refined 52.5606 24.2240 55.0855 X-RAY DIFFRACTION 1.2052 -0.8022 1.0982 3.8127 -0.3275 2.9570 0.0053 -0.1388 0.5151 0.3750 0.2006 0.7984 -0.5135 -0.4847 0.0078 -0.0656 0.2385 -0.1872 0.0638 -0.0427 0.0751 refined 18.7944 19.2220 70.0513 X-RAY DIFFRACTION 0.0176 0.2358 -0.0893 0.2118 -1.0614 1.9259 -0.1856 -0.2201 -0.0854 0.7885 0.2800 -0.1969 -0.6549 -0.4109 -0.0008 0.8162 0.2957 0.0769 0.7918 0.2572 0.5971 refined 12.8934 -9.5135 98.5971 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 chain A and resseq 1:13 X-RAY DIFFRACTION 2 chain A and resseq 14:31 X-RAY DIFFRACTION 3 chain A and resseq 32:57 X-RAY DIFFRACTION 4 chain A and resseq 58:105 X-RAY DIFFRACTION 5 chain A and resseq 106:128 X-RAY DIFFRACTION 6 chain A and resseq 129:181 X-RAY DIFFRACTION 7 chain A and resseq 182:210 X-RAY DIFFRACTION 8 chain A and resseq 211:260 X-RAY DIFFRACTION 9 chain A and resseq 261:301 author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 31 A N LEU 44 A O ALA 275 A O ALA 288 A O GLY 278 A O GLY 291 A N LEU 4 A N LEU 17 A N ALA 7 A N ALA 20 A O ASP 297 A O ASP 310 A N VAL 142 A N VAL 155 A O LEU 174 A O LEU 187 A O ALA 175 A O ALA 188 A N GLU 168 A N GLU 181 1 A ARG 89 A ARG 102 1 A GLY -12 A GLY 1 1 Y 1 A SER -11 A SER 2 1 Y 1 A ALA -10 A ALA 3 1 Y 1 A GLY -9 A GLY 4 1 Y 1 A SER -8 A SER 5 1 Y 1 A GLY -7 A GLY 6 1 Y 1 A THR -6 A THR 7 1 Y 1 A ILE -5 A ILE 8 1 Y 1 A ASP -4 A ASP 9 1 Y 1 A ASP -3 A ASP 10 1 Y 1 A ASP -2 A ASP 11 1 Y 1 A ASP -1 A ASP 12 1 Y 1 A LYS 0 A LYS 13 1 Y 1 A THR 302 A THR 315 1 Y 1 A PHE 303 A PHE 316 1 Y 1 A GLU 304 A GLU 317 1 Y 1 A PRO 305 A PRO 318 1 Y 1 A VAL 306 A VAL 319 1 Y 1 A ASP 307 A ASP 320 1 Y 1 A GLU 308 A GLU 321 1 Y 1 A HIS 309 A HIS 322 1 Y 1 A HIS 310 A HIS 323 1 Y 1 A GLU 311 A GLU 324 1 Y 1 A SER 312 A SER 325 1 Y 1 A HIS 313 A HIS 326 1 Y 1 A GLN 314 A GLN 327 1 Y 1 A VAL 315 A VAL 328 1 Y 1 A PRO 316 A PRO 329 1 Y 1 A VAL 317 A VAL 330 1 Y 1 A THR 318 A THR 331 1 Y 1 A LEU 319 A LEU 332 1 Y 1 A GLU 320 A GLU 333 1 Y 1 A ASN 321 A ASN 334 1 Y 1 A PRO 322 A PRO 335 1 Y 1 A ALA 323 A ALA 336 1 Y 1 A TRP 324 A TRP 337 1 Y 1 A ALA 325 A ALA 338 1 Y 1 A LYS 326 A LYS 339 1 Y 1 A PRO 327 A PRO 340 1 Y 1 A PHE 328 A PHE 341 1 Y 1 A GLU 329 A GLU 342 1 Y 1 A LEU 330 A LEU 343 1 Y 1 A LEU 331 A LEU 344 1 Y 1 A HIS 332 A HIS 345 1 Y 1 A GLY 333 A GLY 346 1 Y 1 A PHE 334 A PHE 347 1 Y 1 A LEU 335 A LEU 348 1 Y 1 A ASN 336 A ASN 349 1 Y 1 A THR 337 A THR 350 1 Y 1 A PRO 338 A PRO 351 1 Y 1 A ALA 339 A ALA 352 1 Y 1 A TYR 340 A TYR 353 1 Y 1 A GLY 341 A GLY 354 1 Y 1 A SER 342 A SER 355 1 Y 1 A HIS 343 A HIS 356 1 Y 1 A ASP 344 A ASP 357 1 Y 1 A ALA 160 57.61 -112.62 1 A ARG 162 -95.37 55.09 1 A ASN 172 -122.49 -52.98 1 A ALA 291 -74.18 40.17 1 A ARG 294 92.96 -25.63 67.36 9.3300 0.0000 -0.0000 7.1486 -0.0000 -16.4786 Phenix, TLS group refinement 0.2550 0.1898 0.1930 0.1930 2.640 39.62 753 16308 14998 5.02 91.66 0.34 Random 1 Isotropic THROUGHOUT 0.00 0 SAD 25.78 1.06 1.30 SAD phasing ML FLAT BULK SOLVENT MODEL 67.364 0.353 0.36 0.38 2.640 39.62 38 2373 31 0 2304 0.008 2378 1.096 3211 15.230 929 0.065 363 0.004 416 0.3020 0.2697 2.8438 137 2624 2624 86.00 0.2841 0.2358 3.1299 150 2807 2807 92.00 0.2822 0.2069 3.5825 154 2929 2929 95.00 0.2668 0.1707 4.5126 159 2987 2987 96.00 0.2209 0.1732 39.62 153 2898 2898 90.00 45.8 2.64 39.62 3RRK 16308 16308 1 1 0.049 0.049 1 29.4 3.7 0.469 2.64 2.69 3.1 826 0.469 1 3.7 98.1 data collection HKL-3000 model building PHENIX refinement PHENIX (phenix.refine: 1.6.4_486) data reduction HKL-3000 data scaling HKL-3000 phasing PHENIX Crystal structure of the cytoplasmic N-terminal domain of subunit I, homolog of subunit a, of V-ATPase 1 N N 2 N N 2 N N 3 N N 4 N N A PRO 9 A PRO 22 HELX_P A ARG 11 A ARG 24 5 1 3 A LEU 12 A LEU 25 HELX_P A GLY 24 A GLY 37 1 2 13 A ARG 32 A ARG 45 HELX_P A ARG 40 A ARG 53 5 3 9 A SER 42 A SER 55 HELX_P A GLY 67 A GLY 80 1 4 26 A SER 80 A SER 93 HELX_P A ALA 126 A ALA 139 1 5 47 A LYS 144 A LYS 157 HELX_P A ALA 160 A ALA 173 1 6 17 A GLU 184 A GLU 197 HELX_P A ARG 194 A ARG 207 1 7 11 A PRO 203 A PRO 216 HELX_P A MET 209 A MET 222 5 8 7 A PRO 210 A PRO 223 HELX_P A ALA 269 A ALA 282 1 9 60 A ALA 284 A ALA 297 HELX_P A ALA 291 A ALA 304 1 10 8 PROTON TRANSPORT alpha beta fold, Proton pump, subunit I/a, V-ATPase, PROTON TRANSPORT D3PQI8_MEIRD UNP 1 1 D3PQI8 MEKLIVAGPKRLARELLAELQKAGVVHIDPLRPDELGEYRLSPTEEAELKRWEAVVSQAEQSLTVVGLATVPSSKPFTGS LEEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLAALAHGLDESPRLGVIPFLVAKPEELEAVRKALQEALA DRFVLEAEPLENQLAALVVVKRSELEAARSSLSRLGLAELRFPGAYGAMPLGKAAARMKERARLAPEELVGIREEVARLS RESGEALIALWTRAKDEVARYKAVADMAAGKYGAALMGWVPQKAKGKVEEALGRLRDQIVYTFEPVDEHHESHQVPVTLE NPAWAKPFELLHGFLNTPAYGSHD 1 344 3RRK 1 344 D3PQI8 A 1 14 357 4 3 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A VAL 26 A VAL 39 A LEU 31 A LEU 44 A ALA 274 A ALA 287 A VAL 280 A VAL 293 A GLU 2 A GLU 15 A GLY 8 A GLY 21 A ASP 297 A ASP 310 A VAL 300 A VAL 313 A LEU 135 A LEU 148 A VAL 142 A VAL 155 A LEU 174 A LEU 187 A LYS 181 A LYS 194 A VAL 164 A VAL 177 A PRO 169 A PRO 182 BINDING SITE FOR RESIDUE NHE A 540 A NHE 540 Software 7 BINDING SITE FOR RESIDUE NHE A 520 A NHE 520 Software 4 BINDING SITE FOR RESIDUE SO4 A 345 A SO4 345 Software 5 A GLU 113 A GLU 126 7 3_656 A LEU 114 A LEU 127 7 1_555 A PHE 115 A PHE 128 7 1_555 A LEU 141 A LEU 154 7 1_555 A GLU 171 A GLU 184 7 1_555 A ASN 172 A ASN 185 7 1_555 A GLN 173 A GLN 186 7 1_555 A LYS 10 A LYS 23 4 5_554 A ALA 13 A ALA 26 4 5_554 A ARG 162 A ARG 175 4 1_555 A LYS 181 A LYS 194 4 1_555 A ILE 112 A ILE 125 5 1_555 A GLY 116 A GLY 129 5 1_555 A LYS 117 A LYS 130 5 1_555 A GLU 120 A GLU 133 5 1_555 A LYS 219 A LYS 232 5 1_555 23 I 2 2 2