0.018762 0.000000 0.000000 0.000000 0.011594 0.000000 0.000000 0.000000 0.009329 0.000000 0.000000 0.000000 Economou, N.J. Nahoum, V. Weeks, S.D. Grasty, K.C. Loll, P.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.000 90.000 90.000 53.300 86.250 107.190 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H9 N O4 S 179.194 n CARBOXYMETHYLATED CYSTEINE L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 89.093 D-ALANINE D-peptide linking C9 H11 N O3 181.189 D-TYROSINE D-peptide linking C8 H9 N O3 167.162 (2R)-amino(4-hydroxyphenyl)ethanoic acid D-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C8 H8 Cl N O4 217.606 (2S)-2-azanyl-2-[2-chloranyl-3,5-bis(oxidanyl)phenyl]ethanoic acid L-peptide linking C13 H21 N3 O2 251.325 (2S)-2-azanyl-N-[3-(dimethylamino)propyl]-2-(3-hydroxyphenyl)ethanamide L-peptide linking C9 H11 N O3 181.189 (2R)-2-(4-hydroxyphenyl)-2-(methylamino)ethanoic acid D-peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C12 H24 O2 200.318 10-METHYLUNDECANOIC ACID non-polymer C6 H12 O6 180.156 alpha-D-mannopyranose alpha-D-mannose; D-mannose; mannose D-saccharide, alpha linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C6 H11 N O6 193.155 2-amino-2-deoxy-beta-D-glucopyranuronic acid 2-amino-2-deoxy-beta-D-glucuronic acid; 2-amino-2-deoxy-D-glucuronic acid; 2-amino-2-deoxy-glucuronic acid D-saccharide, beta linking C9 H10 Cl N O4 231.633 n (betaR)-3-chloro-beta-hydroxy-L-tyrosine L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C4 H6 O6 150.087 L(+)-TARTARIC ACID non-polymer C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N S N 78 N C N 79 N C N 80 N O N 81 N O N 82 N C N 83 N O N 84 N O N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N CL N 95 N N N 96 R C N 97 N C N 98 N C N 99 N O N 100 N O N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 R C N 110 N C N 111 N O N 112 N C Y 113 N C Y 114 N C Y 115 N C Y 116 N C Y 117 N C Y 118 N C N 119 N O N 120 N O N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N N N 133 R C N 134 N C N 135 N O N 136 N O Y 137 N C Y 138 N C Y 139 N C Y 140 N C N 141 N O Y 142 N C Y 143 N C N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N N N 154 S C N 155 N C N 156 N O N 157 N C N 158 N C N 159 N C N 160 N O N 161 N N N 162 N O N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N N N 174 S C N 175 N C N 176 N O N 177 N C N 178 N C N 179 N C N 180 N O N 181 N O N 182 N O N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N N N 193 N C N 194 N C N 195 N O N 196 N O N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N C N 203 N N N 204 N O N 205 N CL Y 206 N C Y 207 N C Y 208 N C N 209 N O Y 210 N C N 211 N O Y 212 N C Y 213 N C N 214 S C N 215 N O N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N C N 225 N N N 226 N O Y 227 N C Y 228 N C Y 229 N C N 230 N O Y 231 N C Y 232 N C Y 233 N C N 234 S C N 235 N N N 236 N C N 237 N C N 238 N C N 239 N N N 240 N C N 241 N C N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N C N 264 N N N 265 N O Y 266 N C Y 267 N C Y 268 N C Y 269 N C N 270 N O Y 271 N C Y 272 N C N 273 R C N 274 N C N 275 N O N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N N N 288 S C N 289 N C N 290 N O N 291 N C Y 292 N C Y 293 N N Y 294 N C Y 295 N C Y 296 N N N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N O N 309 N H N 310 N H N 311 N N N 312 S C N 313 N C N 314 N O N 315 S C N 316 N C N 317 N C N 318 N C N 319 N O N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N N N 334 S C N 335 N C N 336 N O N 337 N C N 338 N C N 339 N C N 340 N C N 341 N O N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N N N 356 S C N 357 N C N 358 N O N 359 N C N 360 N C N 361 N C N 362 N C N 363 N N N 364 N O N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N C N 381 N O N 382 N C N 383 N C N 384 N C N 385 N C N 386 N C N 387 N C N 388 N C N 389 N C N 390 N C N 391 N C N 392 N C N 393 N O N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 S C N 419 S C N 420 S C N 421 S C N 422 R C N 423 N C N 424 N O N 425 N O N 426 N O N 427 N O N 428 N O N 429 N O N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N N N 443 S C N 444 N C N 445 N O N 446 N C N 447 N C N 448 N S N 449 N C N 450 N O N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 R C N 463 R C N 464 R C N 465 S C N 466 S C N 467 N C N 468 N N N 469 N O N 470 N O N 471 N O N 472 N O N 473 N O N 474 N O N 475 N H N 476 N H N 477 N H N 478 N H N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N N N 487 S C N 488 N O Y 489 N C Y 490 N C Y 491 N C Y 492 N C Y 493 N C Y 494 N C N 495 R C N 496 N CL N 497 N O N 498 N C N 499 N O N 500 N O N 501 N H N 502 N H N 503 N H N 504 N H N 505 N H N 506 N H N 507 N H N 508 N H N 509 N H N 510 N H N 511 N N N 512 S C N 513 N C N 514 N O N 515 N C Y 516 N C Y 517 N C Y 518 N C Y 519 N C Y 520 N C Y 521 N C N 522 N O N 523 N H N 524 N H N 525 N H N 526 N H N 527 N H N 528 N H N 529 N H N 530 N H N 531 N H N 532 N H N 533 N H N 534 N N N 535 S C N 536 N C N 537 N O N 538 N C N 539 N C N 540 N C N 541 N O N 542 N H N 543 N H N 544 N H N 545 N H N 546 N H N 547 N H N 548 N H N 549 N H N 550 N H N 551 N N N 552 S C N 553 N C N 554 N O N 555 N C N 556 N O N 557 N O N 558 N H N 559 N H N 560 N H N 561 N H N 562 N H N 563 N H N 564 N H N 565 N N N 566 S C N 567 N C N 568 N O N 569 R C N 570 N O N 571 N C N 572 N O N 573 N H N 574 N H N 575 N H N 576 N H N 577 N H N 578 N H N 579 N H N 580 N H N 581 N H N 582 N O N 583 N O N 584 N C N 585 R C N 586 N O N 587 R C N 588 N O N 589 N C N 590 N O N 591 N O N 592 N H N 593 N H N 594 N H N 595 N H N 596 N H N 597 N H N 598 N N N 599 S C N 600 N C N 601 N O N 602 N C Y 603 N C Y 604 N C Y 605 N C Y 606 N C Y 607 N C Y 608 N C N 609 N O N 610 N O N 611 N H N 612 N H N 613 N H N 614 N H N 615 N H N 616 N H N 617 N H N 618 N H N 619 N H N 620 N H N 621 N H N 622 N N N 623 S C N 624 N C N 625 N O N 626 N C N 627 N C N 628 N C N 629 N O N 630 N H N 631 N H N 632 N H N 633 N H N 634 N H N 635 N H N 636 N H N 637 N H N 638 N H N 639 N H N 640 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N doub N 84 N sing N 85 N sing N 86 N doub N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N doub N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing Y 112 N doub Y 113 N sing Y 114 N sing N 115 N sing Y 116 N doub N 117 N sing Y 118 N doub N 119 N sing Y 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N doub N 132 N sing N 133 N sing Y 134 N doub Y 135 N sing Y 136 N sing N 137 N sing Y 138 N doub N 139 N sing N 140 N sing Y 141 N sing N 142 N sing Y 143 N doub N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N doub N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N doub N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N doub N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N doub N 190 N sing N 191 N sing N 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing Y 199 N doub Y 200 N sing N 201 N sing Y 202 N sing N 203 N sing Y 204 N doub N 205 N sing Y 206 N sing N 207 N sing N 208 N sing N 209 N sing Y 210 N doub N 211 N sing N 212 N sing N 213 N sing N 214 N doub N 215 N sing N 216 N sing N 217 N sing Y 218 N doub Y 219 N sing N 220 N sing Y 221 N sing N 222 N sing Y 223 N doub Y 224 N sing Y 225 N doub N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N doub N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing Y 259 N doub Y 260 N sing N 261 N sing Y 262 N sing N 263 N sing Y 264 N doub N 265 N sing N 266 N sing Y 267 N sing N 268 N sing Y 269 N doub N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing Y 288 N sing Y 289 N doub Y 290 N doub N 291 N sing Y 292 N sing N 293 N sing Y 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N doub N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N doub N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N doub N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N doub N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N doub N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N doub N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing Y 472 N sing Y 473 N doub Y 474 N doub Y 475 N sing Y 476 N doub N 477 N sing Y 478 N sing N 479 N sing N 480 N doub N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N sing N 498 N sing N 499 N sing N 500 N sing N 501 N doub N 502 N sing N 503 N sing N 504 N sing N 505 N sing Y 506 N doub Y 507 N sing Y 508 N sing N 509 N sing Y 510 N doub N 511 N sing Y 512 N doub N 513 N sing Y 514 N sing N 515 N sing N 516 N sing N 517 N sing N 518 N sing N 519 N sing N 520 N sing N 521 N sing N 522 N sing N 523 N sing N 524 N doub N 525 N sing N 526 N sing N 527 N sing N 528 N sing N 529 N sing N 530 N sing N 531 N sing N 532 N sing N 533 N sing N 534 N sing N 535 N sing N 536 N sing N 537 N sing N 538 N sing N 539 N sing N 540 N sing N 541 N doub N 542 N sing N 543 N sing N 544 N sing N 545 N sing N 546 N sing N 547 N sing N 548 N sing N 549 N sing N 550 N sing N 551 N sing N 552 N sing N 553 N sing N 554 N doub N 555 N sing N 556 N sing N 557 N sing N 558 N sing N 559 N sing N 560 N sing N 561 N sing N 562 N sing N 563 N sing N 564 N doub N 565 N sing N 566 N sing N 567 N sing N 568 N sing N 569 N sing N 570 N sing N 571 N sing N 572 N sing N 573 N sing N 574 N sing N 575 N sing N 576 N doub N 577 N sing N 578 N sing N 579 N sing N 580 N sing N 581 N sing N 582 N sing N 583 N sing N 584 N sing N 585 N doub N 586 N sing N 587 N sing N 588 N sing N 589 N sing Y 590 N doub Y 591 N sing Y 592 N sing N 593 N sing Y 594 N doub N 595 N sing Y 596 N doub N 597 N sing Y 598 N sing N 599 N sing N 600 N sing N 601 N sing N 602 N sing N 603 N sing N 604 N sing N 605 N sing N 606 N sing N 607 N sing N 608 N sing N 609 N doub N 610 N sing N 611 N sing N 612 N sing N 613 N sing N 614 N sing N 615 N sing N 616 N sing N 617 N sing N 618 N sing N 619 N sing N 620 N sing US J.Am.Chem.Soc. JACSAT 0004 0002-7863 134 4637 4645 10.1021/ja208755j 22352468 A carrier protein strategy yields the structure of dalbavancin. 2012 10.2210/pdb3rul/pdb pdb_00003rul 93 1 2010-03-02 SINGLE WAVELENGTH M x-ray 1 0.9537 1.0 X6A NSLS 0.9537 SYNCHROTRON NSLS BEAMLINE X6A 8952.293 Ubiquitin 4 man polymer 1289.175 Dalbavancin 4 syn polymer 150.087 L(+)-TARTARIC ACID 4 syn non-polymer 35.453 CHLORIDE ION 1 syn non-polymer 193.155 2-amino-2-deoxy-beta-D-glucopyranuronic acid 4 man non-polymer 180.156 alpha-D-mannopyranose 4 man non-polymer 200.318 10-METHYLUNDECANOIC ACID 4 syn non-polymer 18.015 water 15 nat water no yes MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG(CCS) K(DAL)(DAL) MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGCKAA A,B,C,D polypeptide(L) no yes (HGM)(DTY)(HCL)(GHP)(GHP)(OMY)(HG7) XYXGGYX E,F,G,H polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample UBC 9606 Homo sapiens 562 Escherichia coli 1 3.23 61.94 VAPOR DIFFUSION, HANGING DROP 24% PEG3350, 0.2M ammonium tartrate, 0.015M CYMAL-7, VAPOR DIFFUSION, HANGING DROP, temperature 291K 291 atom_site chem_comp entity entity_poly pdbx_chem_comp_identifier pdbx_entity_nonpoly struct_conn struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model chem_comp_atom chem_comp_bond struct_conn repository Initial release Carbohydrate remediation repository Remediation Atomic model Data collection Derived calculations Polymer sequence Structure summary Data collection Database references Refinement description Structure summary Data collection Derived calculations 1 0 2012-06-06 2 0 2020-07-29 2 1 2023-09-13 2 2 2023-12-06 _atom_site.auth_atom_id _atom_site.label_atom_id _chem_comp.name _chem_comp.type _entity.pdbx_description _entity_poly.pdbx_seq_one_letter_code_can _pdbx_entity_nonpoly.name _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession _chem_comp_atom.atom_id _chem_comp_bond.atom_id_2 _struct_conn.pdbx_leaving_atom_flag DManpa a-D-mannopyranose a-D-Manp Man b-D-GlcpAN High resolution crystal structure of the mouse TAB2-NZF in complex with Lys63-linked di-ubiquitin RCSB Y RCSB 2011-05-05 REL REL TLA L(+)-TARTARIC ACID CL CHLORIDE ION N1L 2-amino-2-deoxy-beta-D-glucopyranuronic acid MAN alpha-D-mannopyranose M12 10-METHYLUNDECANOIC ACID HOH water DALBAVANCIN IS A TETRACYCLIC LIPOGLYCOPEPTIDE. THE SCAFFOLD IS A HEPTAPEPTIDE WITH THE CONFIGURATION D-D-L-D-D-L-L. IT IS FURTHER GLYCOSYLATED BY MONSACCHARIDES 2-AMINO-2-DEOXY-BETA- D-GLUCOPYRANURONIC ACIDRISTOSAMINE AND D-MANNOSE AND HAS FATTY ACID METHYLUNDECANOIC ACID. HERE, DALBAVANCIN IS REPRESENTED BY GROUPING TOGETHER THE SEQUENCE (SEQRES) AND THE THREE LIGANDS (HET) MAN, N1L, AND M12. GROUP: 1 NAME: DALBAVANCIN CHAIN: E, F, G, H COMPONENT_1: PEPTIDE LIKE SEQUENCE RESIDUES 1 TO 7 COMPONENT_2: SUGAR (2-AMINO-2-DEOXY-BETA-D-GLUCOPYRANURONIC ACID) COMPONENT_3: SUGAR (ALPHA-D-MANNOSE) COMPONENT_4: METHYLUNDECANOIC ACID DESCRIPTION: DALBAVANCIN IS A TETRACYCLIC LIPOGLYCOPEPTIDE, GLYCOSYLATED BY A MONOSACCHARIDE ON RESIDUE 4 (RESIDUE 8), AND A MONOSACCHARIDE ON RESIDUE 7 (RESIDUE 9) AND HAS FATTY ACID METHYLUNDECANOIC ACID (RESIDUE 10). THE AUTHORS STATE THAT THESE RESIDUES ARE LIGATED NON-RECOMBINANTLY WITH NATIVE PROTEIN LIGATION AFTER PROTEIN EXPRESSION AND PURIFICATION. 3ANJ PDB ENTRY 3ANJ PDB experimental model TLA 101 3 TLA TLA 101 A TLA 102 3 TLA TLA 102 A TLA 101 3 TLA TLA 101 B TLA 102 3 TLA TLA 102 B CL 103 4 CL CL 103 B N1L 8 5 N1L N1L 8 E MAN 9 6 MAN MAN 9 E M12 10 7 M12 M12 10 E N1L 8 5 N1L N1L 8 F MAN 9 6 MAN MAN 9 F M12 10 7 M12 M12 10 F N1L 8 5 N1L N1L 8 G MAN 9 6 MAN MAN 9 G M12 10 7 M12 M12 10 G N1L 8 5 N1L N1L 8 H MAN 9 6 MAN MAN 9 H M12 10 7 M12 M12 10 H HOH 201 8 HOH HOH 201 A HOH 202 8 HOH HOH 202 A HOH 203 8 HOH HOH 203 A HOH 204 8 HOH HOH 204 A HOH 201 8 HOH HOH 201 B HOH 202 8 HOH HOH 202 B HOH 101 8 HOH HOH 101 C HOH 102 8 HOH HOH 102 C HOH 101 8 HOH HOH 101 D HOH 102 8 HOH HOH 102 D HOH 103 8 HOH HOH 103 D HOH 201 8 HOH HOH 201 G HOH 201 8 HOH HOH 201 H HOH 202 8 HOH HOH 202 H HOH 203 8 HOH HOH 203 H 2.600 2.600 19.650 19.650 MET 1 n 1 MET 1 A GLN 2 n 2 GLN 2 A ILE 3 n 3 ILE 3 A PHE 4 n 4 PHE 4 A VAL 5 n 5 VAL 5 A LYS 6 n 6 LYS 6 A THR 7 n 7 THR 7 A LEU 8 n 8 LEU 8 A THR 9 n 9 THR 9 A GLY 10 n 10 GLY 10 A LYS 11 n 11 LYS 11 A THR 12 n 12 THR 12 A ILE 13 n 13 ILE 13 A THR 14 n 14 THR 14 A LEU 15 n 15 LEU 15 A GLU 16 n 16 GLU 16 A VAL 17 n 17 VAL 17 A GLU 18 n 18 GLU 18 A PRO 19 n 19 PRO 19 A SER 20 n 20 SER 20 A ASP 21 n 21 ASP 21 A THR 22 n 22 THR 22 A ILE 23 n 23 ILE 23 A GLU 24 n 24 GLU 24 A ASN 25 n 25 ASN 25 A VAL 26 n 26 VAL 26 A LYS 27 n 27 LYS 27 A ALA 28 n 28 ALA 28 A LYS 29 n 29 LYS 29 A ILE 30 n 30 ILE 30 A GLN 31 n 31 GLN 31 A ASP 32 n 32 ASP 32 A LYS 33 n 33 LYS 33 A GLU 34 n 34 GLU 34 A GLY 35 n 35 GLY 35 A ILE 36 n 36 ILE 36 A PRO 37 n 37 PRO 37 A PRO 38 n 38 PRO 38 A ASP 39 n 39 ASP 39 A GLN 40 n 40 GLN 40 A GLN 41 n 41 GLN 41 A ARG 42 n 42 ARG 42 A LEU 43 n 43 LEU 43 A ILE 44 n 44 ILE 44 A PHE 45 n 45 PHE 45 A ALA 46 n 46 ALA 46 A GLY 47 n 47 GLY 47 A LYS 48 n 48 LYS 48 A GLN 49 n 49 GLN 49 A LEU 50 n 50 LEU 50 A GLU 51 n 51 GLU 51 A ASP 52 n 52 ASP 52 A GLY 53 n 53 GLY 53 A ARG 54 n 54 ARG 54 A THR 55 n 55 THR 55 A LEU 56 n 56 LEU 56 A SER 57 n 57 SER 57 A ASP 58 n 58 ASP 58 A TYR 59 n 59 TYR 59 A ASN 60 n 60 ASN 60 A ILE 61 n 61 ILE 61 A GLN 62 n 62 GLN 62 A LYS 63 n 63 LYS 63 A GLU 64 n 64 GLU 64 A SER 65 n 65 SER 65 A THR 66 n 66 THR 66 A LEU 67 n 67 LEU 67 A HIS 68 n 68 HIS 68 A LEU 69 n 69 LEU 69 A VAL 70 n 70 VAL 70 A LEU 71 n 71 LEU 71 A ARG 72 n 72 ARG 72 A LEU 73 n 73 LEU 73 A ARG 74 n 74 ARG 74 A GLY 75 n 75 GLY 75 A CYS 76 n 76 CCS 76 A LYS 77 n 77 LYS 77 A DAL 78 n 78 DAL 78 A DAL 79 n 79 DAL 79 A MET 1 n 1 MET 1 B GLN 2 n 2 GLN 2 B ILE 3 n 3 ILE 3 B PHE 4 n 4 PHE 4 B VAL 5 n 5 VAL 5 B LYS 6 n 6 LYS 6 B THR 7 n 7 THR 7 B LEU 8 n 8 LEU 8 B THR 9 n 9 THR 9 B GLY 10 n 10 GLY 10 B LYS 11 n 11 LYS 11 B THR 12 n 12 THR 12 B ILE 13 n 13 ILE 13 B THR 14 n 14 THR 14 B LEU 15 n 15 LEU 15 B GLU 16 n 16 GLU 16 B VAL 17 n 17 VAL 17 B GLU 18 n 18 GLU 18 B PRO 19 n 19 PRO 19 B SER 20 n 20 SER 20 B ASP 21 n 21 ASP 21 B THR 22 n 22 THR 22 B ILE 23 n 23 ILE 23 B GLU 24 n 24 GLU 24 B ASN 25 n 25 ASN 25 B VAL 26 n 26 VAL 26 B LYS 27 n 27 LYS 27 B ALA 28 n 28 ALA 28 B LYS 29 n 29 LYS 29 B ILE 30 n 30 ILE 30 B GLN 31 n 31 GLN 31 B ASP 32 n 32 ASP 32 B LYS 33 n 33 LYS 33 B GLU 34 n 34 GLU 34 B GLY 35 n 35 GLY 35 B ILE 36 n 36 ILE 36 B PRO 37 n 37 PRO 37 B PRO 38 n 38 PRO 38 B ASP 39 n 39 ASP 39 B GLN 40 n 40 GLN 40 B GLN 41 n 41 GLN 41 B ARG 42 n 42 ARG 42 B LEU 43 n 43 LEU 43 B ILE 44 n 44 ILE 44 B PHE 45 n 45 PHE 45 B ALA 46 n 46 ALA 46 B GLY 47 n 47 GLY 47 B LYS 48 n 48 LYS 48 B GLN 49 n 49 GLN 49 B LEU 50 n 50 LEU 50 B GLU 51 n 51 GLU 51 B ASP 52 n 52 ASP 52 B GLY 53 n 53 GLY 53 B ARG 54 n 54 ARG 54 B THR 55 n 55 THR 55 B LEU 56 n 56 LEU 56 B SER 57 n 57 SER 57 B ASP 58 n 58 ASP 58 B TYR 59 n 59 TYR 59 B ASN 60 n 60 ASN 60 B ILE 61 n 61 ILE 61 B GLN 62 n 62 GLN 62 B LYS 63 n 63 LYS 63 B GLU 64 n 64 GLU 64 B SER 65 n 65 SER 65 B THR 66 n 66 THR 66 B LEU 67 n 67 LEU 67 B HIS 68 n 68 HIS 68 B LEU 69 n 69 LEU 69 B VAL 70 n 70 VAL 70 B LEU 71 n 71 LEU 71 B ARG 72 n 72 ARG 72 B LEU 73 n 73 LEU 73 B ARG 74 n 74 ARG 74 B GLY 75 n 75 GLY 75 B CYS 76 n 76 CCS 76 B LYS 77 n 77 LYS 77 B DAL 78 n 78 DAL 78 B DAL 79 n 79 DAL 79 B MET 1 n 1 MET 1 C GLN 2 n 2 GLN 2 C ILE 3 n 3 ILE 3 C PHE 4 n 4 PHE 4 C VAL 5 n 5 VAL 5 C LYS 6 n 6 LYS 6 C THR 7 n 7 THR 7 C LEU 8 n 8 LEU 8 C THR 9 n 9 THR 9 C GLY 10 n 10 GLY 10 C LYS 11 n 11 LYS 11 C THR 12 n 12 THR 12 C ILE 13 n 13 ILE 13 C THR 14 n 14 THR 14 C LEU 15 n 15 LEU 15 C GLU 16 n 16 GLU 16 C VAL 17 n 17 VAL 17 C GLU 18 n 18 GLU 18 C PRO 19 n 19 PRO 19 C SER 20 n 20 SER 20 C ASP 21 n 21 ASP 21 C THR 22 n 22 THR 22 C ILE 23 n 23 ILE 23 C GLU 24 n 24 GLU 24 C ASN 25 n 25 ASN 25 C VAL 26 n 26 VAL 26 C LYS 27 n 27 LYS 27 C ALA 28 n 28 ALA 28 C LYS 29 n 29 LYS 29 C ILE 30 n 30 ILE 30 C GLN 31 n 31 GLN 31 C ASP 32 n 32 ASP 32 C LYS 33 n 33 LYS 33 C GLU 34 n 34 GLU 34 C GLY 35 n 35 GLY 35 C ILE 36 n 36 ILE 36 C PRO 37 n 37 PRO 37 C PRO 38 n 38 PRO 38 C ASP 39 n 39 ASP 39 C GLN 40 n 40 GLN 40 C GLN 41 n 41 GLN 41 C ARG 42 n 42 ARG 42 C LEU 43 n 43 LEU 43 C ILE 44 n 44 ILE 44 C PHE 45 n 45 PHE 45 C ALA 46 n 46 ALA 46 C GLY 47 n 47 GLY 47 C LYS 48 n 48 LYS 48 C GLN 49 n 49 GLN 49 C LEU 50 n 50 LEU 50 C GLU 51 n 51 GLU 51 C ASP 52 n 52 ASP 52 C GLY 53 n 53 GLY 53 C ARG 54 n 54 ARG 54 C THR 55 n 55 THR 55 C LEU 56 n 56 LEU 56 C SER 57 n 57 SER 57 C ASP 58 n 58 ASP 58 C TYR 59 n 59 TYR 59 C ASN 60 n 60 ASN 60 C ILE 61 n 61 ILE 61 C GLN 62 n 62 GLN 62 C LYS 63 n 63 LYS 63 C GLU 64 n 64 GLU 64 C SER 65 n 65 SER 65 C THR 66 n 66 THR 66 C LEU 67 n 67 LEU 67 C HIS 68 n 68 HIS 68 C LEU 69 n 69 LEU 69 C VAL 70 n 70 VAL 70 C LEU 71 n 71 LEU 71 C ARG 72 n 72 ARG 72 C LEU 73 n 73 LEU 73 C ARG 74 n 74 ARG 74 C GLY 75 n 75 GLY 75 C CYS 76 n 76 CCS 76 C LYS 77 n 77 LYS 77 C DAL 78 n 78 DAL 78 C DAL 79 n 79 DAL 79 C MET 1 n 1 MET 1 D GLN 2 n 2 GLN 2 D ILE 3 n 3 ILE 3 D PHE 4 n 4 PHE 4 D VAL 5 n 5 VAL 5 D LYS 6 n 6 LYS 6 D THR 7 n 7 THR 7 D LEU 8 n 8 LEU 8 D THR 9 n 9 THR 9 D GLY 10 n 10 GLY 10 D LYS 11 n 11 LYS 11 D THR 12 n 12 THR 12 D ILE 13 n 13 ILE 13 D THR 14 n 14 THR 14 D LEU 15 n 15 LEU 15 D GLU 16 n 16 GLU 16 D VAL 17 n 17 VAL 17 D GLU 18 n 18 GLU 18 D PRO 19 n 19 PRO 19 D SER 20 n 20 SER 20 D ASP 21 n 21 ASP 21 D THR 22 n 22 THR 22 D ILE 23 n 23 ILE 23 D GLU 24 n 24 GLU 24 D ASN 25 n 25 ASN 25 D VAL 26 n 26 VAL 26 D LYS 27 n 27 LYS 27 D ALA 28 n 28 ALA 28 D LYS 29 n 29 LYS 29 D ILE 30 n 30 ILE 30 D GLN 31 n 31 GLN 31 D ASP 32 n 32 ASP 32 D LYS 33 n 33 LYS 33 D GLU 34 n 34 GLU 34 D GLY 35 n 35 GLY 35 D ILE 36 n 36 ILE 36 D PRO 37 n 37 PRO 37 D PRO 38 n 38 PRO 38 D ASP 39 n 39 ASP 39 D GLN 40 n 40 GLN 40 D GLN 41 n 41 GLN 41 D ARG 42 n 42 ARG 42 D LEU 43 n 43 LEU 43 D ILE 44 n 44 ILE 44 D PHE 45 n 45 PHE 45 D ALA 46 n 46 ALA 46 D GLY 47 n 47 GLY 47 D LYS 48 n 48 LYS 48 D GLN 49 n 49 GLN 49 D LEU 50 n 50 LEU 50 D GLU 51 n 51 GLU 51 D ASP 52 n 52 ASP 52 D GLY 53 n 53 GLY 53 D ARG 54 n 54 ARG 54 D THR 55 n 55 THR 55 D LEU 56 n 56 LEU 56 D SER 57 n 57 SER 57 D ASP 58 n 58 ASP 58 D TYR 59 n 59 TYR 59 D ASN 60 n 60 ASN 60 D ILE 61 n 61 ILE 61 D GLN 62 n 62 GLN 62 D LYS 63 n 63 LYS 63 D GLU 64 n 64 GLU 64 D SER 65 n 65 SER 65 D THR 66 n 66 THR 66 D LEU 67 n 67 LEU 67 D HIS 68 n 68 HIS 68 D LEU 69 n 69 LEU 69 D VAL 70 n 70 VAL 70 D LEU 71 n 71 LEU 71 D ARG 72 n 72 ARG 72 D LEU 73 n 73 LEU 73 D ARG 74 n 74 ARG 74 D GLY 75 n 75 GLY 75 D CYS 76 n 76 CCS 76 D LYS 77 n 77 LYS 77 D DAL 78 n 78 DAL 78 D DAL 79 n 79 DAL 79 D HGM 1 n 1 HGM 1 E DTY 2 n 2 DTY 2 E HCL 3 n 3 HCL 3 E GHP 4 n 4 GHP 4 E GHP 5 n 5 GHP 5 E OMY 6 n 6 OMY 6 E HG7 7 n 7 HG7 7 E HGM 1 n 1 HGM 1 F DTY 2 n 2 DTY 2 F HCL 3 n 3 HCL 3 F GHP 4 n 4 GHP 4 F GHP 5 n 5 GHP 5 F OMY 6 n 6 OMY 6 F HG7 7 n 7 HG7 7 F HGM 1 n 1 HGM 1 G DTY 2 n 2 DTY 2 G HCL 3 n 3 HCL 3 G GHP 4 n 4 GHP 4 G GHP 5 n 5 GHP 5 G OMY 6 n 6 OMY 6 G HG7 7 n 7 HG7 7 G HGM 1 n 1 HGM 1 H DTY 2 n 2 DTY 2 H HCL 3 n 3 HCL 3 H GHP 4 n 4 GHP 4 H GHP 5 n 5 GHP 5 H OMY 6 n 6 OMY 6 H HG7 7 n 7 HG7 7 H author_defined_assembly 2 dimeric author_defined_assembly 2 dimeric author_defined_assembly 2 dimeric author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ILE 13 A O ILE 13 A N VAL 5 A N VAL 5 A N LYS 6 A N LYS 6 A O LEU 67 A O LEU 67 A O HIS 68 A O HIS 68 A N ILE 44 A N ILE 44 A N PHE 45 A N PHE 45 A O LYS 48 A O LYS 48 B O ILE 13 B O ILE 13 B N VAL 5 B N VAL 5 B N PHE 4 B N PHE 4 B O LEU 67 B O LEU 67 B O HIS 68 B O HIS 68 B N ILE 44 B N ILE 44 B N PHE 45 B N PHE 45 B O LYS 48 B O LYS 48 C O ILE 13 C O ILE 13 C N VAL 5 C N VAL 5 C N LYS 6 C N LYS 6 C O LEU 67 C O LEU 67 C O HIS 68 C O HIS 68 C N ILE 44 C N ILE 44 C N PHE 45 C N PHE 45 C O LYS 48 C O LYS 48 C N DAL 79 C N DAL 79 G O GHP 4 G O GHP 4 D O ILE 13 D O ILE 13 D N VAL 5 D N VAL 5 D N LYS 6 D N LYS 6 D O LEU 69 D O LEU 69 D O HIS 68 D O HIS 68 D N ILE 44 D N ILE 44 D N PHE 45 D N PHE 45 D O LYS 48 D O LYS 48 1 A CD CCS 76 A CD CCS 76 1 Y 1 A CE CCS 76 A CE CCS 76 1 Y 1 A OZ1 CCS 76 A OZ1 CCS 76 1 Y 1 A OZ2 CCS 76 A OZ2 CCS 76 1 Y 1 B CD CCS 76 B CD CCS 76 1 Y 1 B CE CCS 76 B CE CCS 76 1 Y 1 B OZ1 CCS 76 B OZ1 CCS 76 1 Y 1 B OZ2 CCS 76 B OZ2 CCS 76 1 Y 1 C CD CCS 76 C CD CCS 76 1 Y 1 C CE CCS 76 C CE CCS 76 1 Y 1 C OZ1 CCS 76 C OZ1 CCS 76 1 Y 1 C OZ2 CCS 76 C OZ2 CCS 76 1 Y 1 D CD CCS 76 D CD CCS 76 1 Y 1 D CE CCS 76 D CE CCS 76 1 Y 1 D OZ1 CCS 76 D OZ1 CCS 76 1 Y 1 D OZ2 CCS 76 D OZ2 CCS 76 1 Y 1 H H N2 O1 N1L M12 8 10 2.07 1 F F N2 O1 N1L M12 8 10 2.11 1 G G N2 O1 N1L M12 8 10 2.17 1 G G GHP OMY 5 6 -94.14 1 F HCL 3 -131.02 -35.54 1 G HCL 3 -130.84 -33.89 1 G OMY 6 -5.93 116.81 1 H HCL 3 -134.79 -31.83 -21.8954 0.0000 -0.0000 40.7618 0.0000 -18.8663 0.2774 0.2428 0.2445 2.500 19.603 907 17635 5.14 99.88 1.000 1.000 0.31 1 1.99 MOLECULAR REPLACEMENT 31.90 0.95 1.20 PDB ENTRY 3ANJ ML FLAT BULK SOLVENT MODEL 32.820 0.318 2.500 19.603 15 3060 189 0 2856 0.008 3112 1.285 4236 13.910 1268 0.083 484 0.008 536 1 A 1 126 X-RAY DIFFRACTION POSITIONAL 2 B 1 126 X-RAY DIFFRACTION POSITIONAL 0.036 3 C 1 126 X-RAY DIFFRACTION POSITIONAL 0.034 4 D 1 100 X-RAY DIFFRACTION POSITIONAL 0.038 1 A 2 61 X-RAY DIFFRACTION POSITIONAL 2 B 2 61 X-RAY DIFFRACTION POSITIONAL 0.023 3 C 2 61 X-RAY DIFFRACTION POSITIONAL 0.028 4 D 2 61 X-RAY DIFFRACTION POSITIONAL 0.021 1 A 3 55 X-RAY DIFFRACTION POSITIONAL 2 B 3 55 X-RAY DIFFRACTION POSITIONAL 0.037 3 C 3 55 X-RAY DIFFRACTION POSITIONAL 0.035 4 D 3 55 X-RAY DIFFRACTION POSITIONAL 0.027 1 A 4 43 X-RAY DIFFRACTION POSITIONAL 2 B 4 43 X-RAY DIFFRACTION POSITIONAL 0.037 3 C 4 43 X-RAY DIFFRACTION POSITIONAL 0.033 4 D 4 43 X-RAY DIFFRACTION POSITIONAL 0.032 1 A 5 252 X-RAY DIFFRACTION POSITIONAL 2 B 5 252 X-RAY DIFFRACTION POSITIONAL 0.032 3 C 5 252 X-RAY DIFFRACTION POSITIONAL 0.034 4 D 5 252 X-RAY DIFFRACTION POSITIONAL 0.027 1 A 6 30 X-RAY DIFFRACTION POSITIONAL 2 B 6 30 X-RAY DIFFRACTION POSITIONAL 0.033 3 C 6 30 X-RAY DIFFRACTION POSITIONAL 0.030 4 D 6 30 X-RAY DIFFRACTION POSITIONAL 0.036 1 F 7 84 X-RAY DIFFRACTION POSITIONAL 2 G 7 84 X-RAY DIFFRACTION POSITIONAL 0.088 0.3771 0.3207 2.6563 158 2710 100.00 0.3448 0.3195 2.8608 159 2736 100.00 0.3597 0.2926 3.1476 172 2747 100.00 0.2683 0.2791 3.6007 150 2762 100.00 0.2742 0.2200 4.5272 134 2817 100.00 0.2181 0.2022 19.6032 134 2956 100.00 50.76 2.5 19.6 3RUL 17703 16489 0 0 1 16.00 93.14 data scaling Wolfgang Kabsch http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html XSCALE package phasing Alexei Vaguine alexei@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/molrep.html MOLREP program refinement Paul D. Adams PDAdams@lbl.gov C++ http://www.phenix-online.org/ PHENIX package 1.6.2_432 data extraction PDB deposit@deposit.rcsb.org June 10, 2010 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.10 data reduction XDS New strategy to analyze structures of glycopeptide-target complexes 1 N N 1 N N 1 N N 1 N N 2 N N 2 N N 2 N N 2 N N 3 N N 3 N N 3 N N 3 N N 4 N N 5 N N 6 N N 7 N N 5 N N 6 N N 7 N N 5 N N 6 N N 7 N N 5 N N 6 N N 7 N N 8 N N 8 N N 8 N N 8 N N 8 N N 8 N N A THR 22 A THR 22 HELX_P A GLY 35 A GLY 35 1 1 14 A PRO 37 A PRO 37 HELX_P A ASP 39 A ASP 39 5 2 3 B THR 22 B THR 22 HELX_P B GLY 35 B GLY 35 1 3 14 B PRO 37 B PRO 37 HELX_P B ASP 39 B ASP 39 5 4 3 C THR 22 C THR 22 HELX_P C GLY 35 C GLY 35 1 5 14 C PRO 37 C PRO 37 HELX_P C ASP 39 C ASP 39 5 6 3 D THR 22 D THR 22 HELX_P D GLY 35 D GLY 35 1 7 14 D PRO 37 D PRO 37 HELX_P D ASP 39 D ASP 39 5 8 3 covale 1.329 both A LYS 77 A C LYS 77 1_555 A DAL 78 A N DAL 78 1_555 covale 1.332 both A DAL 78 A C DAL 78 1_555 A DAL 79 A N DAL 79 1_555 covale 1.330 both B LYS 77 B C LYS 77 1_555 B DAL 78 B N DAL 78 1_555 covale 1.331 both B DAL 78 B C DAL 78 1_555 B DAL 79 B N DAL 79 1_555 covale 1.331 both C LYS 77 C C LYS 77 1_555 C DAL 78 C N DAL 78 1_555 covale 1.327 both C DAL 78 C C DAL 78 1_555 C DAL 79 C N DAL 79 1_555 covale 1.329 both D LYS 77 D C LYS 77 1_555 D DAL 78 D N DAL 78 1_555 covale 1.331 both D DAL 78 D C DAL 78 1_555 D DAL 79 D N DAL 79 1_555 covale 1.336 both E HGM 1 E C HGM 1 1_555 E DTY 2 E N DTY 2 1_555 covale 1.365 one E HGM 1 E C3 HGM 1 1_555 E HCL 3 E O4 HCL 3 1_555 covale 1.335 both E DTY 2 E C DTY 2 1_555 E HCL 3 E N HCL 3 1_555 covale 1.392 none E DTY 2 E OH DTY 2 1_555 E GHP 4 E C3 GHP 4 1_555 covale 1.336 both E HCL 3 E C HCL 3 1_555 E GHP 4 E N GHP 4 1_555 covale 1.332 both E GHP 4 E C GHP 4 1_555 E GHP 5 E N GHP 5 1_555 covale 1.396 none E GHP 4 E C5 GHP 4 1_555 E OMY 6 E OCZ OMY 6 1_555 covale 1.382 one E GHP 4 E O4 GHP 4 1_555 E N1L 8 N C1 N1L 1_555 covale 1.337 both E GHP 5 E C GHP 5 1_555 E OMY 6 E N OMY 6 1_555 covale 1.401 one E GHP 5 E C3 GHP 5 1_555 E HG7 7 E C6 HG7 7 1_555 covale 1.328 both E OMY 6 E C OMY 6 1_555 E HG7 7 E N HG7 7 1_555 covale 1.390 both E HG7 7 E C5 HG7 7 1_555 E MAN 9 O O1 MAN 1_555 covale 1.439 one E N1L 8 N N2 N1L 1_555 E M12 10 P C1 M12 1_555 covale 1.333 both F HGM 1 F C HGM 1 1_555 F DTY 2 F N DTY 2 1_555 covale 1.364 one F HGM 1 F C3 HGM 1 1_555 F HCL 3 F O4 HCL 3 1_555 covale 1.330 both F DTY 2 F C DTY 2 1_555 F HCL 3 F N HCL 3 1_555 covale 1.389 none F DTY 2 F OH DTY 2 1_555 F GHP 4 F C3 GHP 4 1_555 covale 1.339 both F HCL 3 F C HCL 3 1_555 F GHP 4 F N GHP 4 1_555 covale 1.334 both F GHP 4 F C GHP 4 1_555 F GHP 5 F N GHP 5 1_555 covale 1.393 none F GHP 4 F C5 GHP 4 1_555 F OMY 6 F OCZ OMY 6 1_555 covale 1.385 one F GHP 4 F O4 GHP 4 1_555 F N1L 8 Q C1 N1L 1_555 covale 1.331 both F GHP 5 F C GHP 5 1_555 F OMY 6 F N OMY 6 1_555 covale 1.398 one F GHP 5 F C3 GHP 5 1_555 F HG7 7 F C6 HG7 7 1_555 covale 1.338 both F OMY 6 F C OMY 6 1_555 F HG7 7 F N HG7 7 1_555 covale 1.394 both F HG7 7 F C5 HG7 7 1_555 F MAN 9 R O1 MAN 1_555 covale 1.198 one F N1L 8 Q N2 N1L 1_555 F M12 10 S C1 M12 1_555 covale 1.335 both G HGM 1 G C HGM 1 1_555 G DTY 2 G N DTY 2 1_555 covale 1.361 one G HGM 1 G C3 HGM 1 1_555 G HCL 3 G O4 HCL 3 1_555 covale 1.329 both G DTY 2 G C DTY 2 1_555 G HCL 3 G N HCL 3 1_555 covale 1.388 none G DTY 2 G OH DTY 2 1_555 G GHP 4 G C3 GHP 4 1_555 covale 1.329 both G HCL 3 G C HCL 3 1_555 G GHP 4 G N GHP 4 1_555 covale 1.333 both G GHP 4 G C GHP 4 1_555 G GHP 5 G N GHP 5 1_555 covale 1.391 none G GHP 4 G C5 GHP 4 1_555 G OMY 6 G OCZ OMY 6 1_555 covale 1.388 one G GHP 4 G O4 GHP 4 1_555 G N1L 8 T C1 N1L 1_555 covale 1.315 both G GHP 5 G C GHP 5 1_555 G OMY 6 G N OMY 6 1_555 covale 1.400 one G GHP 5 G C3 GHP 5 1_555 G HG7 7 G C6 HG7 7 1_555 covale 1.337 both G OMY 6 G C OMY 6 1_555 G HG7 7 G N HG7 7 1_555 covale 1.390 both G HG7 7 G C5 HG7 7 1_555 G MAN 9 U O1 MAN 1_555 covale 1.269 one G N1L 8 T N2 N1L 1_555 G M12 10 V C1 M12 1_555 covale 1.335 both H HGM 1 H C HGM 1 1_555 H DTY 2 H N DTY 2 1_555 covale 1.358 one H HGM 1 H C3 HGM 1 1_555 H HCL 3 H O4 HCL 3 1_555 covale 1.332 both H DTY 2 H C DTY 2 1_555 H HCL 3 H N HCL 3 1_555 covale 1.388 none H DTY 2 H OH DTY 2 1_555 H GHP 4 H C3 GHP 4 1_555 covale 1.331 both H HCL 3 H C HCL 3 1_555 H GHP 4 H N GHP 4 1_555 covale 1.331 both H GHP 4 H C GHP 4 1_555 H GHP 5 H N GHP 5 1_555 covale 1.386 none H GHP 4 H C5 GHP 4 1_555 H OMY 6 H OCZ OMY 6 1_555 covale 1.387 one H GHP 4 H O4 GHP 4 1_555 H N1L 8 W C1 N1L 1_555 covale 1.334 both H GHP 5 H C GHP 5 1_555 H OMY 6 H N OMY 6 1_555 covale 1.403 one H GHP 5 H C3 GHP 5 1_555 H HG7 7 H C6 HG7 7 1_555 covale 1.332 both H OMY 6 H C OMY 6 1_555 H HG7 7 H N HG7 7 1_555 covale 1.391 both H HG7 7 H C5 HG7 7 1_555 H MAN 9 X O1 MAN 1_555 covale 1.158 one H N1L 8 W N2 N1L 1_555 H M12 10 Y C1 M12 1_555 Signaling Protein/Antibiotic antibiotic, glycopeptide, native protein ligation, fusion, carboxymethylation of cysteine, dalbavancin, Signaling Protein-Antibiotic complex E GHP 5 E GHP 5 1 E OMY 6 E OMY 6 1.45 F GHP 5 F GHP 5 1 F OMY 6 F OMY 6 -20.80 H GHP 5 H GHP 5 1 H OMY 6 H OMY 6 -0.65 chain A and resseq 1:16 chain B and resseq 1:16 chain C and resseq 1:16 chain D and resseq 3:15 chain A and resseq 17:24 chain B and resseq 17:24 chain C and resseq 17:24 chain D and resseq 17:24 chain A and resseq 26:32 chain B and resseq 26:32 chain C and resseq 26:32 chain D and resseq 26:32 chain A and resseq 34:39 chain B and resseq 34:39 chain C and resseq 34:39 chain D and resseq 34:39 chain A and resseq 41:71 chain B and resseq 41:71 chain C and resseq 41:71 chain D and resseq 41:71 chain A and resseq 74:77 chain B and resseq 74:77 chain C and resseq 74:77 chain D and resseq 74:77 chain F and resseq 1:7 chain G and resseq 1:7 given 0.042641 0.332348 0.942193 0.337421 -0.892431 0.299524 0.940388 0.305143 -0.150195 -43.871399 0.666808 48.018398 given 0.290096 0.319267 0.902171 -0.233893 -0.890468 0.390334 0.927975 -0.324246 -0.183647 -26.215599 -39.216099 7.456850 given 0.804344 -0.593734 -0.022592 0.590490 0.803015 -0.080544 0.065963 0.051444 0.996495 -51.017300 28.845301 9.311830 given 0.019530 0.318639 0.947675 0.342244 -0.892724 0.293110 0.939408 0.318611 -0.126487 -44.957001 0.830295 47.217201 given 0.279748 0.336068 0.899332 -0.216497 -0.890524 0.400121 0.935345 -0.306636 -0.176365 -26.112801 -39.414700 7.594710 given 0.787644 -0.616079 -0.007991 0.612367 0.784199 -0.100194 0.067994 0.074024 0.994936 -52.477299 27.918200 10.197300 given 0.016811 0.311385 0.950135 0.309728 -0.905148 0.291161 0.950677 0.289389 -0.111661 -44.953300 -0.066506 47.762600 given 0.270340 0.339946 0.900751 -0.248269 -0.879331 0.406374 0.930204 -0.333488 -0.153320 -25.796499 -39.091301 6.838430 given 0.823752 -0.565994 -0.032909 0.562263 0.823013 -0.080690 0.072754 0.047965 0.996196 -49.475601 30.038500 8.748390 given 0.040060 0.301969 0.952476 0.306461 -0.911012 0.275934 0.951040 0.280842 -0.129036 -44.083000 0.298121 48.352299 given 0.290098 0.313157 0.904310 -0.275433 -0.877641 0.392279 0.916504 -0.362876 -0.168348 -26.619900 -38.732101 6.457860 given 0.809319 -0.587332 -0.006598 0.585279 0.807336 -0.075205 0.049498 0.057004 0.997146 -50.599701 29.130100 9.375920 given 0.034601 0.324270 0.945332 0.321840 -0.899124 0.296639 0.946162 0.293981 -0.135474 -44.241798 0.113244 48.200699 given 0.278826 0.334245 0.900298 -0.243291 -0.882309 0.402915 0.929013 -0.331377 -0.164692 -25.948601 -39.225899 7.152700 given 0.796158 -0.605080 0.003410 0.602643 0.792420 -0.094301 0.054357 0.077134 0.995538 -51.546200 28.389601 10.457500 given 0.160661 0.316142 0.935009 0.285563 -0.921689 0.262570 0.944797 0.224819 -0.238358 -41.040600 0.181438 51.958302 given 0.319211 0.261264 0.910959 -0.314040 -0.877774 0.361790 0.894138 -0.401564 -0.198147 -29.098900 -37.470699 6.050660 given 0.823700 -0.563748 0.060886 0.567020 0.818448 -0.092904 0.002543 0.111048 0.993812 -50.802299 29.883900 12.648600 given 0.804225 -0.591970 0.052853 0.594302 0.800239 -0.080135 0.005143 0.095857 0.995382 -52.039398 27.682501 11.791700 UBC_HUMAN UNP 1 1 P0CG48 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 3RUL PDB 2 3RUL 1 75 3RUL 1 75 P0CG48 A 1 1 75 1 75 3RUL 1 75 P0CG48 B 1 1 75 1 75 3RUL 1 75 P0CG48 C 1 1 75 1 75 3RUL 1 75 P0CG48 D 1 1 75 1 7 3RUL 1 7 3RUL E 2 1 7 1 7 3RUL 1 7 3RUL F 2 1 7 1 7 3RUL 1 7 3RUL G 2 1 7 1 7 3RUL 1 7 3RUL H 2 1 7 1 SEE REMARK 999 CCS 76 3RUL A P0CG48 UNP 76 1 SEE REMARK 999 LYS 77 3RUL A P0CG48 UNP 77 1 SEE REMARK 999 DAL 78 3RUL A P0CG48 UNP 78 1 SEE REMARK 999 DAL 79 3RUL A P0CG48 UNP 79 2 SEE REMARK 999 CCS 76 3RUL B P0CG48 UNP 76 2 SEE REMARK 999 LYS 77 3RUL B P0CG48 UNP 77 2 SEE REMARK 999 DAL 78 3RUL B P0CG48 UNP 78 2 SEE REMARK 999 DAL 79 3RUL B P0CG48 UNP 79 3 SEE REMARK 999 CCS 76 3RUL C P0CG48 UNP 76 3 SEE REMARK 999 LYS 77 3RUL C P0CG48 UNP 77 3 SEE REMARK 999 DAL 78 3RUL C P0CG48 UNP 78 3 SEE REMARK 999 DAL 79 3RUL C P0CG48 UNP 79 4 SEE REMARK 999 CCS 76 3RUL D P0CG48 UNP 76 4 SEE REMARK 999 LYS 77 3RUL D P0CG48 UNP 77 4 SEE REMARK 999 DAL 78 3RUL D P0CG48 UNP 78 4 SEE REMARK 999 DAL 79 3RUL D P0CG48 UNP 79 5 5 5 2 5 anti-parallel parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel A THR 12 A THR 12 A GLU 16 A GLU 16 A GLN 2 A GLN 2 A LYS 6 A LYS 6 A THR 66 A THR 66 A LEU 71 A LEU 71 A GLN 41 A GLN 41 A PHE 45 A PHE 45 A LYS 48 A LYS 48 A GLN 49 A GLN 49 B THR 12 B THR 12 B GLU 16 B GLU 16 B GLN 2 B GLN 2 B LYS 6 B LYS 6 B THR 66 B THR 66 B LEU 71 B LEU 71 B GLN 41 B GLN 41 B PHE 45 B PHE 45 B LYS 48 B LYS 48 B GLN 49 B GLN 49 C THR 12 C THR 12 C GLU 16 C GLU 16 C GLN 2 C GLN 2 C LYS 6 C LYS 6 C THR 66 C THR 66 C LEU 71 C LEU 71 C GLN 41 C GLN 41 C PHE 45 C PHE 45 C LYS 48 C LYS 48 C GLN 49 C GLN 49 C DAL 78 C DAL 78 C DAL 79 C DAL 79 G GHP 4 G GHP 4 G GHP 5 G GHP 5 D THR 12 D THR 12 D GLU 16 D GLU 16 D GLN 2 D GLN 2 D LYS 6 D LYS 6 D THR 66 D THR 66 D LEU 71 D LEU 71 D GLN 41 D GLN 41 D PHE 45 D PHE 45 D LYS 48 D LYS 48 D GLN 49 D GLN 49 19 P 21 21 21