0.016545 0.009552 0.000000 0.000000 0.019105 0.000000 0.000000 0.000000 0.010327 0.00000 0.00000 0.00000 Economou, N.J. Townsend, T.M. Loll, P.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 60.440 60.440 96.830 C8 H9 N O4 183.161 (2S)-amino(3,5-dihydroxyphenyl)ethanoic acid L-peptide linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C6 H12 O6 180.156 beta-D-glucopyranose beta-D-glucose; D-glucose; glucose D-saccharide, beta linking C5 H9 N O4 S 179.194 n CARBOXYMETHYLATED CYSTEINE L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C3 H7 N O2 89.093 D-ALANINE D-peptide linking C8 H9 N O3 167.162 (2R)-amino(4-hydroxyphenyl)ethanoic acid D-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C3 H8 O 60.095 ISOPROPYL ALCOHOL 2-PROPANOL non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C7 H15 N O2 145.199 N-methyl-D-leucine D-peptide linking C6 H14 O2 118.174 (4S)-2-METHYL-2,4-PENTANEDIOL non-polymer C6 H14 O2 118.174 (4R)-2-METHYLPENTANE-2,4-DIOL non-polymer C9 H10 Cl N O4 231.633 n (betaR)-3-chloro-beta-hydroxy-L-tyrosine L-peptide linking C9 H10 Cl N O4 231.633 (betaR)-3-CHLORO-BETA-HYDROXY-D-TYROSINE D-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking O4 P -3 94.971 PHOSPHATE ION non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C7 H15 N O3 161.199 vancosamine (1R,3S,4S,5S)-3-amino-2,3,6-trideoxy-3-methyl-alpha-L-arabino-hexopyranose L-saccharide, alpha linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C4 H12 N O3 1 122.143 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL TRIS BUFFER non-polymer C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 N O Y 3 N C Y 4 N C Y 5 N C Y 6 N C N 7 N O Y 8 N C Y 9 N C N 10 S C N 11 N C N 12 N O N 13 N O N 14 N H N 15 N H N 16 N H N 17 N H N 18 N H N 19 N H N 20 N H N 21 N H N 22 N H N 23 N N N 24 S C N 25 N C N 26 N O N 27 N C N 28 N O N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N N N 37 S C N 38 N C N 39 N O N 40 N C N 41 N C N 42 N C N 43 N N N 44 N C N 45 N N N 46 N N N 47 N O N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N N N 64 S C N 65 N C N 66 N O N 67 N C N 68 N C N 69 N O N 70 N N N 71 N O N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N N N 81 S C N 82 N C N 83 N O N 84 N C N 85 N C N 86 N O N 87 N O N 88 N O N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 R C N 97 S C N 98 S C N 99 R C N 100 N C N 101 R C N 102 N O N 103 N O N 104 N O N 105 N O N 106 N O N 107 N O N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N N N 121 R C N 122 N C N 123 N S N 124 N C N 125 N C N 126 N O N 127 N O N 128 N C N 129 N O N 130 N O N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N CL N 141 N N N 142 R C N 143 N C N 144 N O N 145 N C N 146 N S N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N N N 156 R C N 157 N C N 158 N C N 159 N O N 160 N O N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N N N 169 R C N 170 N C N 171 N O N 172 N O Y 173 N C Y 174 N C Y 175 N C Y 176 N C N 177 N O Y 178 N C Y 179 N C N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N N N 190 S C N 191 N C N 192 N O N 193 N C N 194 N C N 195 N C N 196 N O N 197 N N N 198 N O N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N N N 210 S C N 211 N C N 212 N O N 213 N C N 214 N C N 215 N C N 216 N O N 217 N O N 218 N O N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N N N 229 N C N 230 N C N 231 N O N 232 N O N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N N N 239 S C N 240 N C N 241 N O N 242 N C Y 243 N C Y 244 N N Y 245 N C Y 246 N C Y 247 N N N 248 N O N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N O N 260 N H N 261 N H N 262 N N N 263 S C N 264 N C N 265 N O N 266 S C N 267 N C N 268 N C N 269 N C N 270 N O N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N C N 285 N C N 286 N C N 287 N O N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N N N 297 S C N 298 N C N 299 N O N 300 N C N 301 N C N 302 N C N 303 N C N 304 N O N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N N N 319 S C N 320 N C N 321 N O N 322 N C N 323 N C N 324 N C N 325 N C N 326 N N N 327 N O N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N N N 344 S C N 345 N C N 346 N O N 347 N C N 348 N C N 349 N S N 350 N C N 351 N O N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N N N 364 N C N 365 R C N 366 N C N 367 N O N 368 N C N 369 N C N 370 N C N 371 N C N 372 N O N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N C N 389 N C N 390 N O N 391 N C N 392 N C N 393 S C N 394 N O N 395 N C N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N C N 411 N C N 412 N O N 413 N C N 414 N C N 415 R C N 416 N O N 417 N C N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N N N 433 S C N 434 N O Y 435 N C Y 436 N C Y 437 N C Y 438 N C Y 439 N C Y 440 N C N 441 R C N 442 N CL N 443 N O N 444 N C N 445 N O N 446 N O N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N N N 458 R C N 459 N C N 460 N O N 461 N O N 462 R C N 463 N O Y 464 N C Y 465 N C Y 466 N C Y 467 N C N 468 N CL Y 469 N C Y 470 N C N 471 N O N 472 N H N 473 N H N 474 N H N 475 N H N 476 N H N 477 N H N 478 N H N 479 N H N 480 N H N 481 N H N 482 N N N 483 S C N 484 N C N 485 N O N 486 N C Y 487 N C Y 488 N C Y 489 N C Y 490 N C Y 491 N C Y 492 N C N 493 N O N 494 N H N 495 N H N 496 N H N 497 N H N 498 N H N 499 N H N 500 N H N 501 N H N 502 N H N 503 N H N 504 N H N 505 N P N 506 N O N 507 N O N 508 N O N 509 N O N 510 N N N 511 S C N 512 N C N 513 N O N 514 N C N 515 N C N 516 N C N 517 N O N 518 N H N 519 N H N 520 N H N 521 N H N 522 N H N 523 N H N 524 N H N 525 N H N 526 N H N 527 R C N 528 N C N 529 S C N 530 N N N 531 N C N 532 S C N 533 N O N 534 S C N 535 N O N 536 N C N 537 N O N 538 N H N 539 N H N 540 N H N 541 N H N 542 N H N 543 N H N 544 N H N 545 N H N 546 N H N 547 N H N 548 N H N 549 N H N 550 N H N 551 N H N 552 N H N 553 N N N 554 S C N 555 N C N 556 N O N 557 N C N 558 N O N 559 N O N 560 N H N 561 N H N 562 N H N 563 N H N 564 N H N 565 N H N 566 N H N 567 N N N 568 S C N 569 N C N 570 N O N 571 R C N 572 N O N 573 N C N 574 N O N 575 N H N 576 N H N 577 N H N 578 N H N 579 N H N 580 N H N 581 N H N 582 N H N 583 N H N 584 N N N 585 S C N 586 N C N 587 N O N 588 N C Y 589 N C Y 590 N C Y 591 N C Y 592 N N Y 593 N C Y 594 N C Y 595 N C Y 596 N C Y 597 N C N 598 N O N 599 N H N 600 N H N 601 N H N 602 N H N 603 N H N 604 N H N 605 N H N 606 N H N 607 N H N 608 N H N 609 N H N 610 N H N 611 N C N 612 N C N 613 N C N 614 N C N 615 N N N 616 N O N 617 N O N 618 N O N 619 N H N 620 N H N 621 N H N 622 N H N 623 N H N 624 N H N 625 N H N 626 N H N 627 N H N 628 N H N 629 N H N 630 N H N 631 N N N 632 S C N 633 N C N 634 N O N 635 N C Y 636 N C Y 637 N C Y 638 N C Y 639 N C Y 640 N C Y 641 N C N 642 N O N 643 N O N 644 N H N 645 N H N 646 N H N 647 N H N 648 N H N 649 N H N 650 N H N 651 N H N 652 N H N 653 N H N 654 N H N 655 N N N 656 S C N 657 N C N 658 N O N 659 N C N 660 N C N 661 N C N 662 N O N 663 N H N 664 N H N 665 N H N 666 N H N 667 N H N 668 N H N 669 N H N 670 N H N 671 N H N 672 N H N 673 N H N 1 N sing N 2 N sing Y 3 N sing Y 4 N doub Y 5 N doub Y 6 N sing N 7 N sing Y 8 N doub Y 9 N sing N 10 N sing N 11 N sing N 12 N doub N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N doub N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N doub N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N doub N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N doub N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N doub N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N doub N 130 N sing N 131 N sing N 132 N doub N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N doub N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N doub N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing Y 169 N doub Y 170 N sing Y 171 N sing N 172 N sing Y 173 N doub N 174 N sing N 175 N sing Y 176 N sing N 177 N sing Y 178 N doub N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N doub N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N doub N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N doub N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N doub N 234 N sing N 235 N sing N 236 N sing N 237 N sing Y 238 N sing Y 239 N doub Y 240 N doub N 241 N sing Y 242 N sing N 243 N sing Y 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N doub N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N doub N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N doub N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N doub N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N doub N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing Y 414 N sing Y 415 N doub Y 416 N doub Y 417 N sing Y 418 N doub N 419 N sing Y 420 N sing N 421 N sing N 422 N doub N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N doub N 441 N sing N 442 N sing N 443 N sing N 444 N sing Y 445 N doub Y 446 N sing Y 447 N sing Y 448 N doub Y 449 N doub Y 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N doub N 469 N sing N 470 N sing N 471 N sing N 472 N sing Y 473 N doub Y 474 N sing Y 475 N sing N 476 N sing Y 477 N doub N 478 N sing Y 479 N doub N 480 N sing Y 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N doub N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N doub N 496 N sing N 497 N sing N 498 N sing N 499 N sing N 500 N sing N 501 N sing N 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing N 509 N sing N 510 N sing N 511 N sing N 512 N sing N 513 N sing N 514 N sing N 515 N sing N 516 N sing N 517 N sing N 518 N sing N 519 N sing N 520 N sing N 521 N sing N 522 N sing N 523 N sing N 524 N sing N 525 N sing N 526 N sing N 527 N sing N 528 N sing N 529 N sing N 530 N sing N 531 N sing N 532 N sing N 533 N sing N 534 N sing N 535 N sing N 536 N sing N 537 N sing N 538 N doub N 539 N sing N 540 N sing N 541 N sing N 542 N sing N 543 N sing N 544 N sing N 545 N sing N 546 N sing N 547 N sing N 548 N sing N 549 N sing N 550 N sing N 551 N doub N 552 N sing N 553 N sing N 554 N sing N 555 N sing N 556 N sing N 557 N sing N 558 N sing N 559 N sing N 560 N sing N 561 N sing N 562 N sing N 563 N sing N 564 N sing N 565 N sing N 566 N sing N 567 N doub N 568 N sing N 569 N sing N 570 N sing N 571 N sing Y 572 N doub Y 573 N sing Y 574 N sing N 575 N sing Y 576 N doub Y 577 N sing Y 578 N sing N 579 N sing Y 580 N sing Y 581 N doub N 582 N sing Y 583 N doub N 584 N sing Y 585 N sing N 586 N sing N 587 N sing N 588 N sing N 589 N sing N 590 N sing N 591 N sing N 592 N sing N 593 N sing N 594 N sing N 595 N sing N 596 N sing N 597 N sing N 598 N sing N 599 N sing N 600 N sing N 601 N sing N 602 N sing N 603 N sing N 604 N sing N 605 N sing N 606 N sing N 607 N sing N 608 N sing N 609 N sing N 610 N sing N 611 N sing N 612 N sing N 613 N sing N 614 N doub N 615 N sing N 616 N sing N 617 N sing N 618 N sing Y 619 N doub Y 620 N sing Y 621 N sing N 622 N sing Y 623 N doub N 624 N sing Y 625 N doub N 626 N sing Y 627 N sing N 628 N sing N 629 N sing N 630 N sing N 631 N sing N 632 N sing N 633 N sing N 634 N sing N 635 N sing N 636 N sing N 637 N sing N 638 N doub N 639 N sing N 640 N sing N 641 N sing N 642 N sing N 643 N sing N 644 N sing N 645 N sing N 646 N sing N 647 N sing N 648 N sing N 649 N sing US J.Am.Chem.Soc. JACSAT 0004 0002-7863 134 4637 4645 10.1021/ja208755j 22352468 A carrier protein strategy yields the structure of dalbavancin. 2012 10.2210/pdb3run/pdb pdb_00003run 93 1 2011-03-25 SINGLE WAVELENGTH M x-ray 1 1.000 1.0 X6A NSLS 1.000 SYNCHROTRON NSLS BEAMLINE X6A 19018.799 LYSOZYME 3.2.1.17 C54T, C97A, L164A 1 man polymer 1149.977 VANCOMYCIN 1 nat polymer 323.340 vancosamine-(1-2)-beta-D-glucopyranose 1 man branched 118.174 (4S)-2-METHYL-2,4-PENTANEDIOL 1 syn non-polymer 118.174 (4R)-2-METHYLPENTANE-2,4-DIOL 2 syn non-polymer 94.971 PHOSPHATE ION 1 syn non-polymer 122.143 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 1 syn non-polymer 35.453 CHLORIDE ION 1 syn non-polymer 60.095 ISOPROPYL ALCOHOL 2 syn non-polymer 18.015 water 316 nat water Endolysin, Lysis protein, Muramidase no yes MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILR NAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA YKNA(CCS)K(DAL)(DAL) MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILR NAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA YKNACKAA A polypeptide(L) no yes (MLU)(OMZ)N(GHP)(GHP)(OMY)(3FG) XXNGGYX B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample E 10665 ENTEROBACTERIA PHAGE T4 562 ESCHERICHIA COLI sample 31958 Streptomyces orientalis 1 2.68 54.18 VAPOR DIFFUSION, HANGING DROP 8.5 0.2M ammonium phosphate, 0.1M Tris 8.5, 35% MPD, vapor diffusion, hanging drop, temperature 291K 291 atom_site chem_comp entity entity_poly pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_molecule pdbx_nonpoly_scheme pdbx_struct_assembly_gen pdbx_struct_special_symmetry struct_asym struct_conn struct_ref_seq_dif struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model chem_comp_atom chem_comp_bond repository Initial release Carbohydrate remediation repository Remediation Other Atomic model Data collection Database references Derived calculations Polymer sequence Structure summary Data collection Database references Refinement description Structure summary Data collection 1 0 2012-06-06 1 1 2013-02-27 2 0 2020-07-29 2 1 2023-09-13 2 2 2023-12-06 _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_alt_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.occupancy _atom_site.type_symbol _chem_comp.name _chem_comp.type _entity_poly.pdbx_seq_one_letter_code_can _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_special_symmetry.label_asym_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession _chem_comp_atom.atom_id _chem_comp_bond.atom_id_2 B BGC 8 n C BGC 1 B RER 9 n C RER 2 DGlcpb b-D-glucopyranose b-D-Glcp Glc Structure of bacteriophage T4 lysozyme refined at 1.7A resolution RCSB Y RCSB 2011-05-05 REL REL oligosaccharide WURCS=2.0/2,2,1/[a2122h-1b_1-5][ad621m-1a_1-5_3*C_3*N]/1-2/a2-b1 3 PDB2Glycan 1.1.0 WURCS [][D-1-deoxy-Glcp]{[(2+1)][a-L-2-deoxy-Fucp3N]{}} 3 PDB-CARE LINUCS C1 O2 RER BGC 2 1 3 O1 HO2 sing n n MPD (4S)-2-METHYL-2,4-PENTANEDIOL MRD (4R)-2-METHYLPENTANE-2,4-DIOL PO4 PHOSPHATE ION TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL CL CHLORIDE ION IPA ISOPROPYL ALCOHOL HOH water VANCOMYCIN IS A TRICYCLIC GLYCOPEPTIDE. THE SCAFFOLD IS A HEPTAPEPTIDE WITH THE CONFIGURATION D-D-L-D-D-L-L. IT IS FURTHER GLYCOSYLATED BY A DISACCHARIDE MADE OF D-GLUCOSE AND VANCOSAMINE. HERE, VANCOMYCIN IS REPRESENTED BY GROUPING TOGETHER THE SEQUENCE (SEQRES) AND THE TWO LIGANDS (HET) BGC AND RER. GROUP: 1 NAME: VANCOMYCIN CHAIN: B COMPONENT_1: PEPTIDE LIKE SEQUENCE RESIDUES 1 TO 7 COMPONENT_2: SUGAR (2-MER) RESIDUES 8 AND 9 DESCRIPTION: VANCOMYCIN IS A TRICYCLIC GLYCOPEPTIDE, GLYCOSYLATED BY A DISACCHARIDE (RESIDUES 8 AND 9) ON RESIDUE 4. VANCOMYCIN IS A TRICYCLIC GLYCOPEPTIDE. THE SCAFFOLD IS A HEPTAPEPTIDE WITH THE CONFIGURATION D-D-L-D-D-L-L. IT IS FURTHER GLYCOSYLATED BY A DISACCHARIDE MADE OF D-GLUCOSE AND VANCOSAMINE. HERE, VANCOMYCIN IS REPRESENTED BY GROUPING TOUGHER THE SEQUENCE (SEQRES) AND THE TWO LIGANDS (HET) BGC AND RER. THE AUTHORS STATE THAT THESE RESIDUES ARE LIGATED NON-RECOMBINANTLY WITH NATIVE PROTEIN LIGATION AFTER PROTEIN EXPRESSION AND PURIFICATION. 2LZM PDB experimental model Antibiotic VANCOMYCIN IS A TRICYCLIC GLYCOPEPTIDE, GLYCOSYLATED BY A DISACCHARIDE (RESIDUES 8 AND 9) ON RESIDUE 4. VANCOMYCIN Glycopeptide MPD 201 4 MPD MPD 201 A MRD 202 5 MRD MRD 202 A PO4 203 6 PO4 PO4 203 A TRS 204 7 TRS TRS 204 A CL 205 8 CL CL 205 A IPA 206 9 IPA IPA 206 A IPA 207 9 IPA IPA 207 A MRD 103 5 MRD MRD 103 B HOH 301 10 HOH HOH 301 A HOH 302 10 HOH HOH 302 A HOH 303 10 HOH HOH 303 A HOH 304 10 HOH HOH 304 A HOH 305 10 HOH HOH 305 A HOH 306 10 HOH HOH 306 A HOH 307 10 HOH HOH 307 A HOH 308 10 HOH HOH 308 A HOH 309 10 HOH HOH 309 A HOH 310 10 HOH HOH 310 A HOH 311 10 HOH HOH 311 A HOH 312 10 HOH HOH 312 A HOH 313 10 HOH HOH 313 A HOH 314 10 HOH HOH 314 A HOH 315 10 HOH HOH 315 A HOH 316 10 HOH HOH 316 A HOH 317 10 HOH HOH 317 A HOH 318 10 HOH HOH 318 A HOH 319 10 HOH HOH 319 A HOH 320 10 HOH HOH 320 A HOH 321 10 HOH HOH 321 A HOH 322 10 HOH HOH 322 A HOH 323 10 HOH HOH 323 A HOH 324 10 HOH HOH 324 A HOH 325 10 HOH HOH 325 A HOH 326 10 HOH HOH 326 A HOH 327 10 HOH HOH 327 A HOH 328 10 HOH HOH 328 A HOH 329 10 HOH HOH 329 A HOH 330 10 HOH HOH 330 A HOH 331 10 HOH HOH 331 A HOH 332 10 HOH HOH 332 A HOH 333 10 HOH HOH 333 A HOH 334 10 HOH HOH 334 A HOH 335 10 HOH HOH 335 A HOH 336 10 HOH HOH 336 A HOH 337 10 HOH HOH 337 A HOH 338 10 HOH HOH 338 A HOH 339 10 HOH HOH 339 A HOH 340 10 HOH HOH 340 A HOH 341 10 HOH HOH 341 A HOH 342 10 HOH HOH 342 A HOH 343 10 HOH HOH 343 A HOH 344 10 HOH HOH 344 A HOH 345 10 HOH HOH 345 A HOH 346 10 HOH HOH 346 A HOH 347 10 HOH HOH 347 A HOH 348 10 HOH HOH 348 A HOH 349 10 HOH HOH 349 A HOH 350 10 HOH HOH 350 A HOH 351 10 HOH HOH 351 A HOH 352 10 HOH HOH 352 A HOH 353 10 HOH HOH 353 A HOH 354 10 HOH HOH 354 A HOH 355 10 HOH HOH 355 A HOH 356 10 HOH HOH 356 A HOH 357 10 HOH HOH 357 A HOH 358 10 HOH HOH 358 A HOH 359 10 HOH HOH 359 A HOH 360 10 HOH HOH 360 A HOH 361 10 HOH HOH 361 A HOH 362 10 HOH HOH 362 A HOH 363 10 HOH HOH 363 A HOH 364 10 HOH HOH 364 A HOH 365 10 HOH HOH 365 A HOH 366 10 HOH HOH 366 A HOH 367 10 HOH HOH 367 A HOH 368 10 HOH HOH 368 A HOH 369 10 HOH HOH 369 A HOH 370 10 HOH HOH 370 A HOH 371 10 HOH HOH 371 A HOH 372 10 HOH HOH 372 A HOH 373 10 HOH HOH 373 A HOH 374 10 HOH HOH 374 A HOH 375 10 HOH HOH 375 A HOH 376 10 HOH HOH 376 A HOH 377 10 HOH HOH 377 A HOH 378 10 HOH HOH 378 A HOH 379 10 HOH HOH 379 A HOH 380 10 HOH HOH 380 A HOH 381 10 HOH HOH 381 A HOH 382 10 HOH HOH 382 A HOH 383 10 HOH HOH 383 A HOH 384 10 HOH HOH 384 A HOH 385 10 HOH HOH 385 A HOH 386 10 HOH HOH 386 A HOH 387 10 HOH HOH 387 A HOH 388 10 HOH HOH 388 A HOH 389 10 HOH HOH 389 A HOH 390 10 HOH HOH 390 A HOH 391 10 HOH HOH 391 A HOH 392 10 HOH HOH 392 A HOH 393 10 HOH HOH 393 A HOH 394 10 HOH HOH 394 A HOH 395 10 HOH HOH 395 A HOH 396 10 HOH HOH 396 A HOH 397 10 HOH HOH 397 A HOH 398 10 HOH HOH 398 A HOH 399 10 HOH HOH 399 A HOH 400 10 HOH HOH 400 A HOH 401 10 HOH HOH 401 A HOH 402 10 HOH HOH 402 A HOH 403 10 HOH HOH 403 A HOH 404 10 HOH HOH 404 A HOH 405 10 HOH HOH 405 A HOH 406 10 HOH HOH 406 A HOH 407 10 HOH HOH 407 A HOH 408 10 HOH HOH 408 A HOH 409 10 HOH HOH 409 A HOH 410 10 HOH HOH 410 A HOH 411 10 HOH HOH 411 A HOH 412 10 HOH HOH 412 A HOH 413 10 HOH HOH 413 A HOH 414 10 HOH HOH 414 A HOH 415 10 HOH HOH 415 A HOH 416 10 HOH HOH 416 A HOH 417 10 HOH HOH 417 A HOH 418 10 HOH HOH 418 A HOH 419 10 HOH HOH 419 A HOH 420 10 HOH HOH 420 A HOH 421 10 HOH HOH 421 A HOH 422 10 HOH HOH 422 A HOH 423 10 HOH HOH 423 A HOH 424 10 HOH HOH 424 A HOH 425 10 HOH HOH 425 A HOH 426 10 HOH HOH 426 A HOH 427 10 HOH HOH 427 A HOH 428 10 HOH HOH 428 A HOH 429 10 HOH HOH 429 A HOH 430 10 HOH HOH 430 A HOH 431 10 HOH HOH 431 A HOH 432 10 HOH HOH 432 A HOH 433 10 HOH HOH 433 A HOH 434 10 HOH HOH 434 A HOH 435 10 HOH HOH 435 A HOH 436 10 HOH HOH 436 A HOH 437 10 HOH HOH 437 A HOH 438 10 HOH HOH 438 A HOH 439 10 HOH HOH 439 A HOH 440 10 HOH HOH 440 A HOH 441 10 HOH HOH 441 A HOH 442 10 HOH HOH 442 A HOH 443 10 HOH HOH 443 A HOH 444 10 HOH HOH 444 A HOH 445 10 HOH HOH 445 A HOH 446 10 HOH HOH 446 A HOH 447 10 HOH HOH 447 A HOH 448 10 HOH HOH 448 A HOH 449 10 HOH HOH 449 A HOH 450 10 HOH HOH 450 A HOH 451 10 HOH HOH 451 A HOH 452 10 HOH HOH 452 A HOH 453 10 HOH HOH 453 A HOH 454 10 HOH HOH 454 A HOH 455 10 HOH HOH 455 A HOH 456 10 HOH HOH 456 A HOH 457 10 HOH HOH 457 A HOH 458 10 HOH HOH 458 A HOH 459 10 HOH HOH 459 A HOH 460 10 HOH HOH 460 A HOH 461 10 HOH HOH 461 A HOH 462 10 HOH HOH 462 A HOH 463 10 HOH HOH 463 A HOH 464 10 HOH HOH 464 A HOH 465 10 HOH HOH 465 A HOH 466 10 HOH HOH 466 A HOH 467 10 HOH HOH 467 A HOH 468 10 HOH HOH 468 A HOH 469 10 HOH HOH 469 A HOH 470 10 HOH HOH 470 A HOH 471 10 HOH HOH 471 A HOH 472 10 HOH HOH 472 A HOH 473 10 HOH HOH 473 A HOH 474 10 HOH HOH 474 A HOH 475 10 HOH HOH 475 A HOH 476 10 HOH HOH 476 A HOH 477 10 HOH HOH 477 A HOH 478 10 HOH HOH 478 A HOH 479 10 HOH HOH 479 A HOH 480 10 HOH HOH 480 A HOH 481 10 HOH HOH 481 A HOH 482 10 HOH HOH 482 A HOH 483 10 HOH HOH 483 A HOH 484 10 HOH HOH 484 A HOH 485 10 HOH HOH 485 A HOH 486 10 HOH HOH 486 A HOH 487 10 HOH HOH 487 A HOH 488 10 HOH HOH 488 A HOH 489 10 HOH HOH 489 A HOH 490 10 HOH HOH 490 A HOH 491 10 HOH HOH 491 A HOH 492 10 HOH HOH 492 A HOH 493 10 HOH HOH 493 A HOH 494 10 HOH HOH 494 A HOH 495 10 HOH HOH 495 A HOH 496 10 HOH HOH 496 A HOH 497 10 HOH HOH 497 A HOH 498 10 HOH HOH 498 A HOH 499 10 HOH HOH 499 A HOH 500 10 HOH HOH 500 A HOH 501 10 HOH HOH 501 A HOH 502 10 HOH HOH 502 A HOH 503 10 HOH HOH 503 A HOH 504 10 HOH HOH 504 A HOH 505 10 HOH HOH 505 A HOH 506 10 HOH HOH 506 A HOH 507 10 HOH HOH 507 A HOH 508 10 HOH HOH 508 A HOH 509 10 HOH HOH 509 A HOH 510 10 HOH HOH 510 A HOH 511 10 HOH HOH 511 A HOH 512 10 HOH HOH 512 A HOH 513 10 HOH HOH 513 A HOH 514 10 HOH HOH 514 A HOH 515 10 HOH HOH 515 A HOH 516 10 HOH HOH 516 A HOH 517 10 HOH HOH 517 A HOH 518 10 HOH HOH 518 A HOH 519 10 HOH HOH 519 A HOH 520 10 HOH HOH 520 A HOH 521 10 HOH HOH 521 A HOH 522 10 HOH HOH 522 A HOH 523 10 HOH HOH 523 A HOH 524 10 HOH HOH 524 A HOH 525 10 HOH HOH 525 A HOH 526 10 HOH HOH 526 A HOH 527 10 HOH HOH 527 A HOH 528 10 HOH HOH 528 A HOH 529 10 HOH HOH 529 A HOH 530 10 HOH HOH 530 A HOH 531 10 HOH HOH 531 A HOH 532 10 HOH HOH 532 A HOH 533 10 HOH HOH 533 A HOH 534 10 HOH HOH 534 A HOH 535 10 HOH HOH 535 A HOH 536 10 HOH HOH 536 A HOH 537 10 HOH HOH 537 A HOH 538 10 HOH HOH 538 A HOH 539 10 HOH HOH 539 A HOH 540 10 HOH HOH 540 A HOH 541 10 HOH HOH 541 A HOH 542 10 HOH HOH 542 A HOH 543 10 HOH HOH 543 A HOH 544 10 HOH HOH 544 A HOH 545 10 HOH HOH 545 A HOH 546 10 HOH HOH 546 A HOH 547 10 HOH HOH 547 A HOH 548 10 HOH HOH 548 A HOH 549 10 HOH HOH 549 A HOH 550 10 HOH HOH 550 A HOH 551 10 HOH HOH 551 A HOH 552 10 HOH HOH 552 A HOH 553 10 HOH HOH 553 A HOH 554 10 HOH HOH 554 A HOH 555 10 HOH HOH 555 A HOH 556 10 HOH HOH 556 A HOH 557 10 HOH HOH 557 A HOH 558 10 HOH HOH 558 A HOH 559 10 HOH HOH 559 A HOH 560 10 HOH HOH 560 A HOH 561 10 HOH HOH 561 A HOH 562 10 HOH HOH 562 A HOH 563 10 HOH HOH 563 A HOH 564 10 HOH HOH 564 A HOH 565 10 HOH HOH 565 A HOH 566 10 HOH HOH 566 A HOH 567 10 HOH HOH 567 A HOH 568 10 HOH HOH 568 A HOH 569 10 HOH HOH 569 A HOH 570 10 HOH HOH 570 A HOH 571 10 HOH HOH 571 A HOH 572 10 HOH HOH 572 A HOH 573 10 HOH HOH 573 A HOH 574 10 HOH HOH 574 A HOH 575 10 HOH HOH 575 A HOH 576 10 HOH HOH 576 A HOH 577 10 HOH HOH 577 A HOH 578 10 HOH HOH 578 A HOH 579 10 HOH HOH 579 A HOH 580 10 HOH HOH 580 A HOH 581 10 HOH HOH 581 A HOH 582 10 HOH HOH 582 A HOH 583 10 HOH HOH 583 A HOH 584 10 HOH HOH 584 A HOH 585 10 HOH HOH 585 A HOH 586 10 HOH HOH 586 A HOH 587 10 HOH HOH 587 A HOH 588 10 HOH HOH 588 A HOH 589 10 HOH HOH 589 A HOH 590 10 HOH HOH 590 A HOH 591 10 HOH HOH 591 A HOH 592 10 HOH HOH 592 A HOH 593 10 HOH HOH 593 A HOH 594 10 HOH HOH 594 A HOH 595 10 HOH HOH 595 A HOH 596 10 HOH HOH 596 A HOH 597 10 HOH HOH 597 A HOH 598 10 HOH HOH 598 A HOH 599 10 HOH HOH 599 A HOH 600 10 HOH HOH 600 A HOH 601 10 HOH HOH 601 A HOH 602 10 HOH HOH 602 A HOH 603 10 HOH HOH 603 A HOH 201 10 HOH HOH 201 B HOH 202 10 HOH HOH 202 B HOH 203 10 HOH HOH 203 B HOH 204 10 HOH HOH 204 B HOH 205 10 HOH HOH 205 B HOH 206 10 HOH HOH 206 B HOH 207 10 HOH HOH 207 B HOH 208 10 HOH HOH 208 B HOH 209 10 HOH HOH 209 B HOH 210 10 HOH HOH 210 B HOH 211 10 HOH HOH 211 B HOH 212 10 HOH HOH 212 B HOH 213 10 HOH HOH 213 B 1.560 1.560 19.780 19.780 MET 1 n 1 MET 1 A ASN 2 n 2 ASN 2 A ILE 3 n 3 ILE 3 A PHE 4 n 4 PHE 4 A GLU 5 n 5 GLU 5 A MET 6 n 6 MET 6 A LEU 7 n 7 LEU 7 A ARG 8 n 8 ARG 8 A ILE 9 n 9 ILE 9 A ASP 10 n 10 ASP 10 A GLU 11 n 11 GLU 11 A GLY 12 n 12 GLY 12 A LEU 13 n 13 LEU 13 A ARG 14 n 14 ARG 14 A LEU 15 n 15 LEU 15 A LYS 16 n 16 LYS 16 A ILE 17 n 17 ILE 17 A TYR 18 n 18 TYR 18 A LYS 19 n 19 LYS 19 A ASP 20 n 20 ASP 20 A THR 21 n 21 THR 21 A GLU 22 n 22 GLU 22 A GLY 23 n 23 GLY 23 A TYR 24 n 24 TYR 24 A TYR 25 n 25 TYR 25 A THR 26 n 26 THR 26 A ILE 27 n 27 ILE 27 A GLY 28 n 28 GLY 28 A ILE 29 n 29 ILE 29 A GLY 30 n 30 GLY 30 A HIS 31 n 31 HIS 31 A LEU 32 n 32 LEU 32 A LEU 33 n 33 LEU 33 A THR 34 n 34 THR 34 A LYS 35 n 35 LYS 35 A SER 36 n 36 SER 36 A PRO 37 n 37 PRO 37 A SER 38 n 38 SER 38 A LEU 39 n 39 LEU 39 A ASN 40 n 40 ASN 40 A ALA 41 n 41 ALA 41 A ALA 42 n 42 ALA 42 A LYS 43 n 43 LYS 43 A SER 44 n 44 SER 44 A GLU 45 n 45 GLU 45 A LEU 46 n 46 LEU 46 A ASP 47 n 47 ASP 47 A LYS 48 n 48 LYS 48 A ALA 49 n 49 ALA 49 A ILE 50 n 50 ILE 50 A GLY 51 n 51 GLY 51 A ARG 52 n 52 ARG 52 A ASN 53 n 53 ASN 53 A THR 54 n 54 THR 54 A ASN 55 n 55 ASN 55 A GLY 56 n 56 GLY 56 A VAL 57 n 57 VAL 57 A ILE 58 n 58 ILE 58 A THR 59 n 59 THR 59 A LYS 60 n 60 LYS 60 A ASP 61 n 61 ASP 61 A GLU 62 n 62 GLU 62 A ALA 63 n 63 ALA 63 A GLU 64 n 64 GLU 64 A LYS 65 n 65 LYS 65 A LEU 66 n 66 LEU 66 A PHE 67 n 67 PHE 67 A ASN 68 n 68 ASN 68 A GLN 69 n 69 GLN 69 A ASP 70 n 70 ASP 70 A VAL 71 n 71 VAL 71 A ASP 72 n 72 ASP 72 A ALA 73 n 73 ALA 73 A ALA 74 n 74 ALA 74 A VAL 75 n 75 VAL 75 A ARG 76 n 76 ARG 76 A GLY 77 n 77 GLY 77 A ILE 78 n 78 ILE 78 A LEU 79 n 79 LEU 79 A ARG 80 n 80 ARG 80 A ASN 81 n 81 ASN 81 A ALA 82 n 82 ALA 82 A LYS 83 n 83 LYS 83 A LEU 84 n 84 LEU 84 A LYS 85 n 85 LYS 85 A PRO 86 n 86 PRO 86 A VAL 87 n 87 VAL 87 A TYR 88 n 88 TYR 88 A ASP 89 n 89 ASP 89 A SER 90 n 90 SER 90 A LEU 91 n 91 LEU 91 A ASP 92 n 92 ASP 92 A ALA 93 n 93 ALA 93 A VAL 94 n 94 VAL 94 A ARG 95 n 95 ARG 95 A ARG 96 n 96 ARG 96 A ALA 97 n 97 ALA 97 A ALA 98 n 98 ALA 98 A LEU 99 n 99 LEU 99 A ILE 100 n 100 ILE 100 A ASN 101 n 101 ASN 101 A MET 102 n 102 MET 102 A VAL 103 n 103 VAL 103 A PHE 104 n 104 PHE 104 A GLN 105 n 105 GLN 105 A MET 106 n 106 MET 106 A GLY 107 n 107 GLY 107 A GLU 108 n 108 GLU 108 A THR 109 n 109 THR 109 A GLY 110 n 110 GLY 110 A VAL 111 n 111 VAL 111 A ALA 112 n 112 ALA 112 A GLY 113 n 113 GLY 113 A PHE 114 n 114 PHE 114 A THR 115 n 115 THR 115 A ASN 116 n 116 ASN 116 A SER 117 n 117 SER 117 A LEU 118 n 118 LEU 118 A ARG 119 n 119 ARG 119 A MET 120 n 120 MET 120 A LEU 121 n 121 LEU 121 A GLN 122 n 122 GLN 122 A GLN 123 n 123 GLN 123 A LYS 124 n 124 LYS 124 A ARG 125 n 125 ARG 125 A TRP 126 n 126 TRP 126 A ASP 127 n 127 ASP 127 A GLU 128 n 128 GLU 128 A ALA 129 n 129 ALA 129 A ALA 130 n 130 ALA 130 A VAL 131 n 131 VAL 131 A ASN 132 n 132 ASN 132 A LEU 133 n 133 LEU 133 A ALA 134 n 134 ALA 134 A LYS 135 n 135 LYS 135 A SER 136 n 136 SER 136 A ARG 137 n 137 ARG 137 A TRP 138 n 138 TRP 138 A TYR 139 n 139 TYR 139 A ASN 140 n 140 ASN 140 A GLN 141 n 141 GLN 141 A THR 142 n 142 THR 142 A PRO 143 n 143 PRO 143 A ASN 144 n 144 ASN 144 A ARG 145 n 145 ARG 145 A ALA 146 n 146 ALA 146 A LYS 147 n 147 LYS 147 A ARG 148 n 148 ARG 148 A VAL 149 n 149 VAL 149 A ILE 150 n 150 ILE 150 A THR 151 n 151 THR 151 A THR 152 n 152 THR 152 A PHE 153 n 153 PHE 153 A ARG 154 n 154 ARG 154 A THR 155 n 155 THR 155 A GLY 156 n 156 GLY 156 A THR 157 n 157 THR 157 A TRP 158 n 158 TRP 158 A ASP 159 n 159 ASP 159 A ALA 160 n 160 ALA 160 A TYR 161 n 161 TYR 161 A LYS 162 n 162 LYS 162 A ASN 163 n 163 ASN 163 A ALA 164 n 164 ALA 164 A CCS 165 n 165 CCS 165 A LYS 166 n 166 LYS 166 A DAL 167 n 167 DAL 167 A DAL 168 n 168 DAL 168 A MLU 1 n 1 MLU 1 B OMZ 2 n 2 OMZ 2 B ASN 3 n 3 ASN 3 B GHP 4 n 4 GHP 4 B GHP 5 n 5 GHP 5 B OMY 6 n 6 OMY 6 B 3FG 7 n 7 3FG 7 B author_defined_assembly 2 dimeric A CCS 165 CARBOXYMETHYLATED CYSTEINE A CCS 165 CYS 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TYR 18 A N TYR 18 A O THR 26 A O THR 26 A N TYR 25 A N TYR 25 A O LEU 33 A O LEU 33 1 A HOH 535 L HOH 1 B HOH 206 M HOH 64.450 5.330 -0.3277 -0.0000 0.0000 -0.3277 -0.0000 0.6554 0.1799 0.1475 0.1491 1.4000 19.7840 3879 77081 5.0300 98.8800 1.000 0.300 0.9234 0.1800 RANDOM 1 1.430 MOLECULAR REPLACEMENT 14.5000 0.3800 0.7000 2LZM ML FLAT BULK SOLVENT MODEL 54.717 0.394 1.4000 19.7840 316 1798 67 0 1415 0.008 1541 1.317 2099 15.028 599 0.069 234 0.007 257 0.2684 0.2370 1.4501 377 6604 10 89.00 0.2008 0.1834 1.5081 369 7389 10 99.00 0.1918 0.1658 1.5768 407 7359 10 100.00 0.1954 0.1447 1.6598 403 7421 10 100.00 0.1745 0.1309 1.7638 421 7366 10 100.00 0.1576 0.1203 1.8999 368 7424 10 100.00 0.1715 0.1397 2.0909 403 7383 10 100.00 0.1709 0.1374 2.3930 378 7406 10 100.00 0.1804 0.1452 3.0132 391 7416 10 100.00 0.1730 0.1490 19.7856 362 7434 10 100.00 18.614 1.400 19.8 3RUN 77978 77081 -3.000 0.076 1 13.750 5.48 98.800 0.767 0.652 1.400 1.440 2.040 19858 5816 5100 0.745 1 87.700 0.565 0.533 1.440 1.480 2.900 25898 5616 5464 0.597 1 97.300 0.425 0.456 1.480 1.520 3.820 30478 5491 5491 0.504 1 100.000 0.335 0.357 1.520 1.570 4.810 29463 5286 5286 0.394 1 100.000 0.280 0.304 1.570 1.620 5.610 28566 5108 5107 0.336 1 100.000 0.237 0.256 1.620 1.670 6.530 28005 4991 4991 0.282 1 100.000 0.181 0.209 1.670 1.740 7.940 27119 4812 4812 0.230 1 100.000 0.152 0.174 1.740 1.810 9.350 26186 4633 4632 0.192 1 100.000 0.118 0.137 1.810 1.890 11.530 25186 4435 4434 0.151 1 100.000 0.093 0.109 1.890 1.980 13.930 23855 4200 4200 0.120 1 100.000 0.067 0.085 1.980 2.090 17.620 23103 4052 4051 0.094 1 100.000 0.051 0.070 2.090 2.210 20.760 21687 3789 3789 0.077 1 100.000 0.042 0.061 2.210 2.370 23.270 20628 3602 3602 0.067 1 100.000 0.038 0.057 2.370 2.560 24.440 19098 3333 3333 0.063 1 100.000 0.035 0.051 2.560 2.800 27.380 17592 3053 3053 0.056 1 100.000 0.029 0.046 2.800 3.130 30.460 15992 2775 2775 0.051 1 100.000 0.023 0.041 3.130 3.610 34.730 14074 2452 2452 0.045 1 100.000 0.021 0.041 3.610 4.430 37.400 11829 2066 2066 0.045 1 100.000 0.023 0.041 4.430 6.260 35.990 9135 1593 1593 0.045 1 100.000 0.023 0.042 6.260 37.380 4766 875 850 0.047 1 97.100 data scaling Wolfgang Kabsch http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html XSCALE package phasing Alexei Vaguine alexei@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/molrep.html MOLREP program refinement Paul D. Adams PDAdams@lbl.gov C++ http://www.phenix-online.org/ PHENIX package 1.6.2_432 data extraction PDB deposit@deposit.rcsb.org June 10, 2010 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.10 data reduction XDS New strategy to analyze structures of glycopeptide antibiotic-target complexes 1 N N 2 N N 3 N N 4 N N 5 N N 6 N N 7 N N 8 N N 9 N N 9 N N 5 N N 10 N N 10 N N A ASN 2 A ASN 2 HELX_P A GLY 12 A GLY 12 1 1 11 A SER 38 A SER 38 HELX_P A GLY 51 A GLY 51 1 2 14 A THR 59 A THR 59 HELX_P A ASN 81 A ASN 81 1 3 23 A LYS 83 A LYS 83 HELX_P A LEU 91 A LEU 91 1 4 9 A ASP 92 A ASP 92 HELX_P A GLY 107 A GLY 107 1 5 16 A GLY 107 A GLY 107 HELX_P A GLY 113 A GLY 113 1 6 7 A PHE 114 A PHE 114 HELX_P A GLN 123 A GLN 123 1 7 10 A ARG 125 A ARG 125 HELX_P A LYS 135 A LYS 135 1 8 11 A SER 136 A SER 136 HELX_P A THR 142 A THR 142 1 9 7 A THR 142 A THR 142 HELX_P A GLY 156 A GLY 156 1 10 15 A TRP 158 A TRP 158 HELX_P A LYS 162 A LYS 162 5 11 5 covale 1.333 both A ALA 164 A C ALA 164 1_555 A CCS 165 A N CCS 165 1_555 covale 1.326 both A CCS 165 A C CCS 165 1_555 A LYS 166 A N LYS 166 1_555 covale 1.328 both A LYS 166 A C LYS 166 1_555 A DAL 167 A N DAL 167 1_555 covale 1.326 both A DAL 167 A C DAL 167 1_555 A DAL 168 A N DAL 168 1_555 covale 1.335 both B MLU 1 B C MLU 1 1_555 B OMZ 2 B N OMZ 2 1_555 covale 1.337 both B OMZ 2 B C OMZ 2 1_555 B ASN 3 B N ASN 3 1_555 covale 1.400 none B OMZ 2 B OH OMZ 2 1_555 B GHP 4 B C5 GHP 4 1_555 covale 1.336 both B ASN 3 B C ASN 3 1_555 B GHP 4 B N GHP 4 1_555 covale 1.331 both B GHP 4 B C GHP 4 1_555 B GHP 5 B N GHP 5 1_555 covale 1.398 none B GHP 4 B C3 GHP 4 1_555 B OMY 6 B OCZ OMY 6 1_555 covale 1.434 one A B GHP 4 B O4 GHP 4 1_555 C BGC 1 C C1 BGC 1_555 covale 1.430 one B B GHP 4 B O4 GHP 4 1_555 C BGC 1 C C1 BGC 1_555 covale 1.332 both B GHP 5 B C GHP 5 1_555 B OMY 6 B N OMY 6 1_555 covale 1.419 none B GHP 5 B C5 GHP 5 1_555 B 3FG 7 B CG2 3FG 7 1_555 covale 1.326 both B OMY 6 B C OMY 6 1_555 B 3FG 7 B N 3FG 7 1_555 covale 1.429 both A A C BGC 1 C O2 BGC 1_555 C RER 2 C C1 RER 1_555 covale 1.431 both B B C BGC 1 C O2 BGC 1_555 C RER 2 C C1 RER 1_555 HYDROLASE/ANTIBIOTIC antibiotic, glycopeptide, native protein ligation, fusion, carboxymethylation of cysteine, vancomycin, HYDROLASE-ANTIBIOTIC complex B GHP 5 B GHP 5 1 B OMY 6 B OMY 6 5.99 LYS_BPT4 UNP 1 1 P00720 MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILR NAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA YKNL NOR00681 NOR 2 NOR00681 1 164 3RUN 1 164 P00720 A 1 1 164 1 7 3RUN 1 7 3RUN B 2 1 7 1 CYS engineered mutation THR 54 3RUN A P00720 UNP 54 54 1 CYS engineered mutation ALA 97 3RUN A P00720 UNP 97 97 1 LEU engineered mutation ALA 164 3RUN A P00720 UNP 164 164 1 SEE REMARK 999 CCS 165 3RUN A P00720 UNP 165 1 SEE REMARK 999 LYS 166 3RUN A P00720 UNP 166 1 SEE REMARK 999 DAL 167 3RUN A P00720 UNP 167 1 SEE REMARK 999 DAL 168 3RUN A P00720 UNP 168 3 anti-parallel anti-parallel A ARG 14 A ARG 14 A LYS 19 A LYS 19 A TYR 25 A TYR 25 A GLY 28 A GLY 28 A HIS 31 A HIS 31 A THR 34 A THR 34 154 P 32 2 1