0.008939 0.005161 0.000000 0.000000 0.010322 0.000000 0.000000 0.000000 0.005206 0.00000 0.00000 0.00000 DuBois, R.M. Zaraket, H. Reddivari, M. Heath, R.J. White, S.W. Russell, C.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 111.867 111.867 192.090 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose D-saccharide, beta linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Plos Pathog. 1553-7366 7 e1002398 e1002398 10.1371/journal.ppat.1002398 22144894 Acid stability of the hemagglutinin protein regulates H5N1 influenza virus pathogenicity. 2011 100 1 CCD 2010-02-15 MAR CCD SINGLE WAVELENGTH M x-ray 1 1.0000 1.0 22-ID APS 1.0000 SYNCHROTRON APS BEAMLINE 22-ID 37782.715 Hemagglutinin HA1 chain 1 man polymer 20937.143 Hemagglutinin HA2 chain 1 man polymer 424.401 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 1 man branched 96.063 SULFATE ION 2 syn non-polymer 18.015 water 16 nat water no no DLGSMADPGYLLEDQICIGYHANNSTEQVDTIMEKNVTVTHAQDILEKTHNGKLCDLDGVKPLILRDCSVAGWLLGNPMC DEFINVPEWSYIVEKASPANDLCYPGDFNDYEELKHLLSRINHFEKIQIIPKSSWSNHEASSGVSSACPYLGKSSFFRNV VWLIKKNSAYPTIKRSYNNTNQEDLLVLWGIHHPNDAAEQTKLYQNPTTYISVGTSTLNQRLVPKIATRSKVNGQSGRME FFWTILKPNDAINFESNGNFIAPEYAYKIVKKGDSAIMKSELEYGNCNTKCQTPMGAINSSMPFHNIHPLTIGECPKYVK SNRLVLATGLRNTPQR DLGSMADPGYLLEDQICIGYHANNSTEQVDTIMEKNVTVTHAQDILEKTHNGKLCDLDGVKPLILRDCSVAGWLLGNPMC DEFINVPEWSYIVEKASPANDLCYPGDFNDYEELKHLLSRINHFEKIQIIPKSSWSNHEASSGVSSACPYLGKSSFFRNV VWLIKKNSAYPTIKRSYNNTNQEDLLVLWGIHHPNDAAEQTKLYQNPTTYISVGTSTLNQRLVPKIATRSKVNGQSGRME FFWTILKPNDAINFESNGNFIAPEYAYKIVKKGDSAIMKSELEYGNCNTKCQTPMGAINSSMPFHNIHPLTIGECPKYVK SNRLVLATGLRNTPQR A polypeptide(L) no no GLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDGVTNKVNSIIDKMNTQFEAVGREFNNLERRIENL NKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVKNGTYDYP QYSEEARLNREEISGVRSLVPR GLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDGVTNKVNSIIDKMNTQFEAVGREFNNLERRIENL NKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVKNGTYDYP QYSEEARLNREEISGVRSLVPR B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n A/Chicken/Hong Kong/YU562/2001 (H5N1) fall armyworm sample HA 196426 Influenza A virus 7108 Spodoptera frugiperda Sf9 baculovirus pAcGP67B A/Chicken/Hong Kong/YU562/2001 (H5N1) fall armyworm sample HA 196426 Influenza A virus 7108 Spodoptera frugiperda Sf9 baculovirus pAcGP67B 1 5.91 79.18 VAPOR DIFFUSION, HANGING DROP 6.6 1.62M ammonium sulfate, 0.1M sodium cacodylate pH 6.6, VAPOR DIFFUSION, HANGING DROP, temperature 291K 291 atom_site chem_comp entity pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_struct_assembly_gen struct_asym struct_conn struct_ref_seq_dif struct_site struct_site_gen repository Initial release Carbohydrate remediation repository Remediation Database references Atomic model Data collection Database references Derived calculations Structure summary 1 0 2011-12-14 1 1 2012-03-28 2 0 2020-07-29 _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.type_symbol _chem_comp.name _chem_comp.type _entity.formula_weight _entity.pdbx_description _entity.pdbx_number_of_molecules _entity.src_method _entity.type _pdbx_struct_assembly_gen.asym_id_list _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_role _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_ref_seq_dif.details D NAG 1 n C NAG 1 D NAG 2 n C NAG 2 DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc RCSB Y RCSB 2011-05-14 REL REL oligosaccharide DGlcpNAcb1-4DGlcpNAcb1- 3 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1 3 PDB2Glycan 1.1.0 WURCS []{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}} 3 PDB-CARE LINUCS C1 O4 NAG NAG 2 1 3 O1 HO4 sing n n SO4 SULFATE ION HOH water SO4 1 4 SO4 SO4 327 A SO4 2 4 SO4 SO4 328 A HOH 1 5 HOH HOH 331 A HOH 2 5 HOH HOH 332 A HOH 3 5 HOH HOH 333 A HOH 5 5 HOH HOH 334 A HOH 6 5 HOH HOH 335 A HOH 7 5 HOH HOH 336 A HOH 8 5 HOH HOH 337 A HOH 10 5 HOH HOH 338 A HOH 11 5 HOH HOH 339 A HOH 12 5 HOH HOH 340 A HOH 13 5 HOH HOH 341 A HOH 14 5 HOH HOH 342 A HOH 15 5 HOH HOH 343 A HOH 16 5 HOH HOH 344 A HOH 4 5 HOH HOH 183 B HOH 9 5 HOH HOH 184 B 44.370 2.960 2.960 48.440 48.440 Phaser MODE: MR_AUTO n 1 -2 A n 2 -1 A n 3 0 A n 4 1 A n 5 2 A n 6 3 A n 7 4 A n 8 5 A n 9 6 A n 10 7 A n 11 8 A n 12 9 A n 13 10 A n 14 11 A n 15 12 A n 16 13 A n 17 14 A n 18 15 A n 19 16 A n 20 17 A n 21 18 A n 22 19 A n 23 20 A n 24 21 A n 25 22 A n 26 23 A n 27 24 A n 28 25 A n 29 26 A n 30 27 A n 31 28 A n 32 29 A n 33 30 A n 34 31 A n 35 32 A n 36 33 A n 37 34 A n 38 35 A n 39 36 A n 40 37 A n 41 38 A n 42 39 A n 43 40 A n 44 41 A n 45 42 A LEU 43 n 46 LEU 43 A GLU 44 n 47 GLU 44 A LYS 45 n 48 LYS 45 A THR 46 n 49 THR 46 A HIS 47 n 50 HIS 47 A ASN 48 n 51 ASN 48 A GLY 49 n 52 GLY 49 A LYS 50 n 53 LYS 50 A LEU 51 n 54 LEU 51 A CYS 52 n 55 CYS 52 A ASP 53 n 56 ASP 53 A LEU 53 n 57 A LEU 53 A ASP 54 n 58 ASP 54 A GLY 55 n 59 GLY 55 A VAL 56 n 60 VAL 56 A LYS 57 n 61 LYS 57 A PRO 58 n 62 PRO 58 A LEU 59 n 63 LEU 59 A ILE 60 n 64 ILE 60 A LEU 61 n 65 LEU 61 A ARG 62 n 66 ARG 62 A ASP 63 n 67 ASP 63 A CYS 64 n 68 CYS 64 A SER 65 n 69 SER 65 A VAL 66 n 70 VAL 66 A ALA 67 n 71 ALA 67 A GLY 68 n 72 GLY 68 A TRP 69 n 73 TRP 69 A LEU 70 n 74 LEU 70 A LEU 71 n 75 LEU 71 A GLY 72 n 76 GLY 72 A ASN 73 n 77 ASN 73 A PRO 74 n 78 PRO 74 A MET 75 n 79 MET 75 A CYS 76 n 80 CYS 76 A ASP 77 n 81 ASP 77 A GLU 78 n 82 GLU 78 A PHE 79 n 83 PHE 79 A ILE 80 n 84 ILE 80 A ASN 81 n 85 ASN 81 A VAL 82 n 86 VAL 82 A PRO 82 n 87 A PRO 82 A GLU 83 n 88 GLU 83 A TRP 84 n 89 TRP 84 A SER 85 n 90 SER 85 A TYR 86 n 91 TYR 86 A ILE 87 n 92 ILE 87 A VAL 88 n 93 VAL 88 A GLU 89 n 94 GLU 89 A LYS 90 n 95 LYS 90 A ALA 91 n 96 ALA 91 A SER 92 n 97 SER 92 A PRO 93 n 98 PRO 93 A ALA 94 n 99 ALA 94 A ASN 95 n 100 ASN 95 A ASP 96 n 101 ASP 96 A LEU 96 n 102 A LEU 96 A CYS 97 n 103 CYS 97 A TYR 98 n 104 TYR 98 A PRO 99 n 105 PRO 99 A GLY 100 n 106 GLY 100 A ASP 101 n 107 ASP 101 A PHE 102 n 108 PHE 102 A ASN 103 n 109 ASN 103 A ASP 104 n 110 ASP 104 A TYR 105 n 111 TYR 105 A GLU 106 n 112 GLU 106 A GLU 107 n 113 GLU 107 A LEU 108 n 114 LEU 108 A LYS 109 n 115 LYS 109 A HIS 110 n 116 HIS 110 A LEU 111 n 117 LEU 111 A LEU 112 n 118 LEU 112 A SER 113 n 119 SER 113 A ARG 114 n 120 ARG 114 A ILE 115 n 121 ILE 115 A ASN 116 n 122 ASN 116 A HIS 117 n 123 HIS 117 A PHE 118 n 124 PHE 118 A GLU 119 n 125 GLU 119 A LYS 120 n 126 LYS 120 A ILE 121 n 127 ILE 121 A GLN 122 n 128 GLN 122 A ILE 123 n 129 ILE 123 A ILE 124 n 130 ILE 124 A PRO 125 n 131 PRO 125 A LYS 125 n 132 A LYS 125 A SER 125 n 133 B SER 125 A SER 126 n 134 SER 126 A TRP 127 n 135 TRP 127 A SER 128 n 136 SER 128 A ASN 129 n 137 ASN 129 A HIS 130 n 138 HIS 130 A GLU 131 n 139 GLU 131 A ALA 132 n 140 ALA 132 A SER 133 n 141 SER 133 A SER 133 n 142 A SER 133 A GLY 134 n 143 GLY 134 A VAL 135 n 144 VAL 135 A SER 136 n 145 SER 136 A SER 137 n 146 SER 137 A ALA 138 n 147 ALA 138 A CYS 139 n 148 CYS 139 A PRO 140 n 149 PRO 140 A TYR 141 n 150 TYR 141 A LEU 142 n 151 LEU 142 A GLY 143 n 152 GLY 143 A LYS 144 n 153 LYS 144 A SER 145 n 154 SER 145 A SER 146 n 155 SER 146 A PHE 147 n 156 PHE 147 A PHE 148 n 157 PHE 148 A ARG 149 n 158 ARG 149 A ASN 150 n 159 ASN 150 A VAL 151 n 160 VAL 151 A VAL 152 n 161 VAL 152 A TRP 153 n 162 TRP 153 A LEU 154 n 163 LEU 154 A ILE 155 n 164 ILE 155 A LYS 156 n 165 LYS 156 A LYS 157 n 166 LYS 157 A ASN 158 n 167 ASN 158 A SER 159 n 168 SER 159 A ALA 160 n 169 ALA 160 A TYR 161 n 170 TYR 161 A PRO 162 n 171 PRO 162 A THR 163 n 172 THR 163 A ILE 164 n 173 ILE 164 A LYS 165 n 174 LYS 165 A ARG 166 n 175 ARG 166 A SER 167 n 176 SER 167 A TYR 168 n 177 TYR 168 A ASN 169 n 178 ASN 169 A ASN 170 n 179 ASN 170 A THR 171 n 180 THR 171 A ASN 172 n 181 ASN 172 A GLN 173 n 182 GLN 173 A GLU 174 n 183 GLU 174 A ASP 175 n 184 ASP 175 A LEU 176 n 185 LEU 176 A LEU 177 n 186 LEU 177 A VAL 178 n 187 VAL 178 A LEU 179 n 188 LEU 179 A TRP 180 n 189 TRP 180 A GLY 181 n 190 GLY 181 A ILE 182 n 191 ILE 182 A HIS 183 n 192 HIS 183 A HIS 184 n 193 HIS 184 A PRO 185 n 194 PRO 185 A ASN 186 n 195 ASN 186 A ASP 187 n 196 ASP 187 A ALA 188 n 197 ALA 188 A ALA 189 n 198 ALA 189 A GLU 190 n 199 GLU 190 A GLN 191 n 200 GLN 191 A THR 192 n 201 THR 192 A LYS 193 n 202 LYS 193 A LEU 194 n 203 LEU 194 A TYR 195 n 204 TYR 195 A GLN 196 n 205 GLN 196 A ASN 197 n 206 ASN 197 A PRO 198 n 207 PRO 198 A THR 199 n 208 THR 199 A THR 200 n 209 THR 200 A TYR 201 n 210 TYR 201 A ILE 202 n 211 ILE 202 A SER 203 n 212 SER 203 A VAL 204 n 213 VAL 204 A GLY 205 n 214 GLY 205 A THR 206 n 215 THR 206 A SER 207 n 216 SER 207 A THR 208 n 217 THR 208 A LEU 209 n 218 LEU 209 A ASN 210 n 219 ASN 210 A GLN 211 n 220 GLN 211 A ARG 212 n 221 ARG 212 A LEU 213 n 222 LEU 213 A VAL 214 n 223 VAL 214 A PRO 215 n 224 PRO 215 A LYS 216 n 225 LYS 216 A ILE 217 n 226 ILE 217 A ALA 218 n 227 ALA 218 A THR 219 n 228 THR 219 A ARG 220 n 229 ARG 220 A SER 221 n 230 SER 221 A LYS 222 n 231 LYS 222 A VAL 223 n 232 VAL 223 A ASN 224 n 233 ASN 224 A GLY 225 n 234 GLY 225 A GLN 226 n 235 GLN 226 A SER 227 n 236 SER 227 A GLY 228 n 237 GLY 228 A ARG 229 n 238 ARG 229 A MET 230 n 239 MET 230 A GLU 231 n 240 GLU 231 A PHE 232 n 241 PHE 232 A PHE 233 n 242 PHE 233 A TRP 234 n 243 TRP 234 A THR 235 n 244 THR 235 A ILE 236 n 245 ILE 236 A LEU 237 n 246 LEU 237 A LYS 238 n 247 LYS 238 A PRO 239 n 248 PRO 239 A ASN 240 n 249 ASN 240 A ASP 241 n 250 ASP 241 A ALA 242 n 251 ALA 242 A ILE 243 n 252 ILE 243 A ASN 244 n 253 ASN 244 A PHE 245 n 254 PHE 245 A GLU 246 n 255 GLU 246 A SER 247 n 256 SER 247 A ASN 248 n 257 ASN 248 A GLY 249 n 258 GLY 249 A ASN 250 n 259 ASN 250 A PHE 251 n 260 PHE 251 A ILE 252 n 261 ILE 252 A ALA 253 n 262 ALA 253 A PRO 254 n 263 PRO 254 A GLU 255 n 264 GLU 255 A TYR 256 n 265 TYR 256 A ALA 257 n 266 ALA 257 A TYR 258 n 267 TYR 258 A LYS 259 n 268 LYS 259 A ILE 260 n 269 ILE 260 A VAL 261 n 270 VAL 261 A LYS 262 n 271 LYS 262 A LYS 263 n 272 LYS 263 A GLY 264 n 273 GLY 264 A ASP 264 n 274 A ASP 264 A SER 265 n 275 SER 265 A ALA 266 n 276 ALA 266 A ILE 267 n 277 ILE 267 A MET 268 n 278 MET 268 A LYS 269 n 279 LYS 269 A SER 270 n 280 SER 270 A GLU 271 n 281 GLU 271 A LEU 272 n 282 LEU 272 A GLU 273 n 283 GLU 273 A TYR 274 n 284 TYR 274 A GLY 275 n 285 GLY 275 A ASN 276 n 286 ASN 276 A CYS 277 n 287 CYS 277 A ASN 278 n 288 ASN 278 A THR 279 n 289 THR 279 A LYS 280 n 290 LYS 280 A CYS 281 n 291 CYS 281 A GLN 282 n 292 GLN 282 A THR 283 n 293 THR 283 A PRO 284 n 294 PRO 284 A MET 285 n 295 MET 285 A GLY 286 n 296 GLY 286 A ALA 287 n 297 ALA 287 A ILE 288 n 298 ILE 288 A ASN 289 n 299 ASN 289 A SER 290 n 300 SER 290 A SER 291 n 301 SER 291 A MET 292 n 302 MET 292 A PRO 293 n 303 PRO 293 A PHE 294 n 304 PHE 294 A HIS 295 n 305 HIS 295 A ASN 296 n 306 ASN 296 A ILE 297 n 307 ILE 297 A HIS 298 n 308 HIS 298 A PRO 299 n 309 PRO 299 A LEU 300 n 310 LEU 300 A THR 301 n 311 THR 301 A ILE 302 n 312 ILE 302 A GLY 303 n 313 GLY 303 A GLU 304 n 314 GLU 304 A CYS 305 n 315 CYS 305 A PRO 306 n 316 PRO 306 A LYS 307 n 317 LYS 307 A TYR 308 n 318 TYR 308 A VAL 309 n 319 VAL 309 A LYS 310 n 320 LYS 310 A SER 311 n 321 SER 311 A ASN 312 n 322 ASN 312 A n 323 313 A n 324 314 A n 325 315 A n 326 316 A n 327 317 A n 328 318 A n 329 319 A n 330 320 A n 331 321 A n 332 322 A n 333 323 A n 334 324 A n 335 325 A n 336 326 A n 1 1 B n 2 2 B n 3 3 B n 4 4 B n 5 5 B n 6 6 B n 7 7 B n 8 8 B n 9 9 B n 10 10 B n 11 11 B n 12 12 B n 13 13 B n 14 14 B n 15 15 B n 16 16 B n 17 17 B n 18 18 B n 19 19 B n 20 20 B n 21 21 B n 22 22 B n 23 23 B n 24 24 B n 25 25 B n 26 26 B n 27 27 B n 28 28 B n 29 29 B n 30 30 B n 31 31 B n 32 32 B n 33 33 B n 34 34 B n 35 35 B n 36 36 B n 37 37 B n 38 38 B n 39 39 B n 40 40 B n 41 41 B n 42 42 B n 43 43 B n 44 44 B n 45 45 B n 46 46 B n 47 47 B n 48 48 B n 49 49 B n 50 50 B n 51 51 B n 52 52 B n 53 53 B n 54 54 B n 55 55 B n 56 56 B n 57 57 B n 58 58 B MET 59 n 59 MET 59 B ASN 60 n 60 ASN 60 B THR 61 n 61 THR 61 B GLN 62 n 62 GLN 62 B PHE 63 n 63 PHE 63 B GLU 64 n 64 GLU 64 B ALA 65 n 65 ALA 65 B VAL 66 n 66 VAL 66 B GLY 67 n 67 GLY 67 B ARG 68 n 68 ARG 68 B GLU 69 n 69 GLU 69 B PHE 70 n 70 PHE 70 B ASN 71 n 71 ASN 71 B ASN 72 n 72 ASN 72 B LEU 73 n 73 LEU 73 B GLU 74 n 74 GLU 74 B ARG 75 n 75 ARG 75 B ARG 76 n 76 ARG 76 B ILE 77 n 77 ILE 77 B GLU 78 n 78 GLU 78 B ASN 79 n 79 ASN 79 B LEU 80 n 80 LEU 80 B ASN 81 n 81 ASN 81 B LYS 82 n 82 LYS 82 B LYS 83 n 83 LYS 83 B MET 84 n 84 MET 84 B GLU 85 n 85 GLU 85 B ASP 86 n 86 ASP 86 B GLY 87 n 87 GLY 87 B PHE 88 n 88 PHE 88 B LEU 89 n 89 LEU 89 B ASP 90 n 90 ASP 90 B VAL 91 n 91 VAL 91 B TRP 92 n 92 TRP 92 B THR 93 n 93 THR 93 B TYR 94 n 94 TYR 94 B ASN 95 n 95 ASN 95 B ALA 96 n 96 ALA 96 B GLU 97 n 97 GLU 97 B LEU 98 n 98 LEU 98 B LEU 99 n 99 LEU 99 B VAL 100 n 100 VAL 100 B LEU 101 n 101 LEU 101 B n 102 102 B n 103 103 B n 104 104 B n 105 105 B n 106 106 B n 107 107 B n 108 108 B n 109 109 B n 110 110 B n 111 111 B n 112 112 B n 113 113 B n 114 114 B n 115 115 B n 116 116 B n 117 117 B n 118 118 B n 119 119 B n 120 120 B n 121 121 B n 122 122 B n 123 123 B n 124 124 B n 125 125 B n 126 126 B n 127 127 B n 128 128 B n 129 129 B n 130 130 B n 131 131 B n 132 132 B n 133 133 B n 134 134 B n 135 135 B n 136 136 B n 137 137 B n 138 138 B n 139 139 B n 140 140 B n 141 141 B n 142 142 B n 143 143 B n 144 144 B n 145 145 B n 146 146 B n 147 147 B n 148 148 B n 149 149 B n 150 150 B n 151 151 B n 152 152 B n 153 153 B n 154 154 B n 155 155 B n 156 156 B n 157 157 B n 158 158 B n 159 159 B n 160 160 B n 161 161 B n 162 162 B n 163 163 B n 164 164 B n 165 165 B n 166 166 B n 167 167 B n 168 168 B n 169 169 B n 170 170 B n 171 171 B n 172 172 B n 173 173 B n 174 174 B n 175 175 B n 176 176 B n 177 177 B n 178 178 B n 179 179 B n 180 180 B n 181 181 B n 182 182 B author_and_software_defined_assembly PISA 6 hexameric 14810 -102 40730 A ASN 169 GLYCOSYLATION SITE A ASN 178 ASN 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_565 -y,x-y+1,z crystal symmetry operation -55.9335000000 96.8796638452 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 3_455 -x+y-1,-x,z crystal symmetry operation -111.8670000000 0.0000000000 0.0000000000 A N LEU 51 A N LEU 54 A O GLY 275 A O GLY 285 A N LEU 59 A N LEU 63 A O VAL 88 A O VAL 93 A N ILE 87 A N ILE 92 A O MET 268 A O MET 278 A N ASP 101 A N ASP 107 A O PHE 232 A O PHE 241 A O LEU 237 A O LEU 246 A N LEU 176 A N LEU 185 A N LEU 177 A N LEU 186 A O TYR 258 A O TYR 267 A O LYS 262 A O LYS 271 A N ASN 116 A N ASN 122 A N ASP 101 A N ASP 107 A O PHE 232 A O PHE 241 A O LEU 237 A O LEU 246 A N LEU 176 A N LEU 185 A N GLY 181 A N GLY 190 A O ILE 252 A O ILE 261 A O ALA 253 A O ALA 262 A N VAL 152 A N VAL 161 A N SER 136 A N SER 145 A O SER 146 A O SER 155 A N ILE 164 A N ILE 173 A O SER 247 A O SER 256 A O GLU 246 A O GLU 255 A N SER 203 A N SER 212 A N ILE 202 A N ILE 211 A O LEU 213 A O LEU 222 A N GLN 282 A N GLN 292 A O ILE 302 A O ILE 312 A N HIS 295 A N HIS 305 A O LYS 307 A O LYS 317 1 A CG GLU 304 A CG GLU 314 1 Y 1 A CD GLU 304 A CD GLU 314 1 Y 1 A OE1 GLU 304 A OE1 GLU 314 1 Y 1 A OE2 GLU 304 A OE2 GLU 314 1 Y 1 A ASP -2 A ASP 1 1 Y 1 A LEU -1 A LEU 2 1 Y 1 A GLY 0 A GLY 3 1 Y 1 A SER 1 A SER 4 1 Y 1 A MET 2 A MET 5 1 Y 1 A ALA 3 A ALA 6 1 Y 1 A ASP 4 A ASP 7 1 Y 1 A PRO 5 A PRO 8 1 Y 1 A GLY 6 A GLY 9 1 Y 1 A TYR 7 A TYR 10 1 Y 1 A LEU 8 A LEU 11 1 Y 1 A LEU 9 A LEU 12 1 Y 1 A GLU 10 A GLU 13 1 Y 1 A ASP 11 A ASP 14 1 Y 1 A GLN 12 A GLN 15 1 Y 1 A ILE 13 A ILE 16 1 Y 1 A CYS 14 A CYS 17 1 Y 1 A ILE 15 A ILE 18 1 Y 1 A GLY 16 A GLY 19 1 Y 1 A TYR 17 A TYR 20 1 Y 1 A HIS 18 A HIS 21 1 Y 1 A ALA 19 A ALA 22 1 Y 1 A ASN 20 A ASN 23 1 Y 1 A ASN 21 A ASN 24 1 Y 1 A SER 22 A SER 25 1 Y 1 A THR 23 A THR 26 1 Y 1 A GLU 24 A GLU 27 1 Y 1 A GLN 25 A GLN 28 1 Y 1 A VAL 26 A VAL 29 1 Y 1 A ASP 27 A ASP 30 1 Y 1 A THR 28 A THR 31 1 Y 1 A ILE 29 A ILE 32 1 Y 1 A MET 30 A MET 33 1 Y 1 A GLU 31 A GLU 34 1 Y 1 A LYS 32 A LYS 35 1 Y 1 A ASN 33 A ASN 36 1 Y 1 A VAL 34 A VAL 37 1 Y 1 A THR 35 A THR 38 1 Y 1 A VAL 36 A VAL 39 1 Y 1 A THR 37 A THR 40 1 Y 1 A HIS 38 A HIS 41 1 Y 1 A ALA 39 A ALA 42 1 Y 1 A GLN 40 A GLN 43 1 Y 1 A ASP 41 A ASP 44 1 Y 1 A ILE 42 A ILE 45 1 Y 1 A ARG 313 A ARG 323 1 Y 1 A LEU 314 A LEU 324 1 Y 1 A VAL 315 A VAL 325 1 Y 1 A LEU 316 A LEU 326 1 Y 1 A ALA 317 A ALA 327 1 Y 1 A THR 318 A THR 328 1 Y 1 A GLY 319 A GLY 329 1 Y 1 A LEU 320 A LEU 330 1 Y 1 A ARG 321 A ARG 331 1 Y 1 A ASN 322 A ASN 332 1 Y 1 A THR 323 A THR 333 1 Y 1 A PRO 324 A PRO 334 1 Y 1 A GLN 325 A GLN 335 1 Y 1 A ARG 326 A ARG 336 1 Y 1 B GLY 1 B GLY 1 1 Y 1 B LEU 2 B LEU 2 1 Y 1 B PHE 3 B PHE 3 1 Y 1 B GLY 4 B GLY 4 1 Y 1 B ALA 5 B ALA 5 1 Y 1 B ILE 6 B ILE 6 1 Y 1 B ALA 7 B ALA 7 1 Y 1 B GLY 8 B GLY 8 1 Y 1 B PHE 9 B PHE 9 1 Y 1 B ILE 10 B ILE 10 1 Y 1 B GLU 11 B GLU 11 1 Y 1 B GLY 12 B GLY 12 1 Y 1 B GLY 13 B GLY 13 1 Y 1 B TRP 14 B TRP 14 1 Y 1 B GLN 15 B GLN 15 1 Y 1 B GLY 16 B GLY 16 1 Y 1 B MET 17 B MET 17 1 Y 1 B VAL 18 B VAL 18 1 Y 1 B ASP 19 B ASP 19 1 Y 1 B GLY 20 B GLY 20 1 Y 1 B TRP 21 B TRP 21 1 Y 1 B TYR 22 B TYR 22 1 Y 1 B GLY 23 B GLY 23 1 Y 1 B TYR 24 B TYR 24 1 Y 1 B HIS 25 B HIS 25 1 Y 1 B HIS 26 B HIS 26 1 Y 1 B SER 27 B SER 27 1 Y 1 B ASN 28 B ASN 28 1 Y 1 B GLU 29 B GLU 29 1 Y 1 B GLN 30 B GLN 30 1 Y 1 B GLY 31 B GLY 31 1 Y 1 B SER 32 B SER 32 1 Y 1 B GLY 33 B GLY 33 1 Y 1 B TYR 34 B TYR 34 1 Y 1 B ALA 35 B ALA 35 1 Y 1 B ALA 36 B ALA 36 1 Y 1 B ASP 37 B ASP 37 1 Y 1 B LYS 38 B LYS 38 1 Y 1 B GLU 39 B GLU 39 1 Y 1 B SER 40 B SER 40 1 Y 1 B THR 41 B THR 41 1 Y 1 B GLN 42 B GLN 42 1 Y 1 B LYS 43 B LYS 43 1 Y 1 B ALA 44 B ALA 44 1 Y 1 B ILE 45 B ILE 45 1 Y 1 B ASP 46 B ASP 46 1 Y 1 B GLY 47 B GLY 47 1 Y 1 B VAL 48 B VAL 48 1 Y 1 B THR 49 B THR 49 1 Y 1 B ASN 50 B ASN 50 1 Y 1 B LYS 51 B LYS 51 1 Y 1 B VAL 52 B VAL 52 1 Y 1 B ASN 53 B ASN 53 1 Y 1 B SER 54 B SER 54 1 Y 1 B ILE 55 B ILE 55 1 Y 1 B ILE 56 B ILE 56 1 Y 1 B ASP 57 B ASP 57 1 Y 1 B LYS 58 B LYS 58 1 Y 1 B MET 102 B MET 102 1 Y 1 B GLU 103 B GLU 103 1 Y 1 B ASN 104 B ASN 104 1 Y 1 B GLU 105 B GLU 105 1 Y 1 B ARG 106 B ARG 106 1 Y 1 B THR 107 B THR 107 1 Y 1 B LEU 108 B LEU 108 1 Y 1 B ASP 109 B ASP 109 1 Y 1 B PHE 110 B PHE 110 1 Y 1 B HIS 111 B HIS 111 1 Y 1 B ASP 112 B ASP 112 1 Y 1 B SER 113 B SER 113 1 Y 1 B ASN 114 B ASN 114 1 Y 1 B VAL 115 B VAL 115 1 Y 1 B LYS 116 B LYS 116 1 Y 1 B ASN 117 B ASN 117 1 Y 1 B LEU 118 B LEU 118 1 Y 1 B TYR 119 B TYR 119 1 Y 1 B ASP 120 B ASP 120 1 Y 1 B LYS 121 B LYS 121 1 Y 1 B VAL 122 B VAL 122 1 Y 1 B ARG 123 B ARG 123 1 Y 1 B LEU 124 B LEU 124 1 Y 1 B GLN 125 B GLN 125 1 Y 1 B LEU 126 B LEU 126 1 Y 1 B ARG 127 B ARG 127 1 Y 1 B ASP 128 B ASP 128 1 Y 1 B ASN 129 B ASN 129 1 Y 1 B ALA 130 B ALA 130 1 Y 1 B LYS 131 B LYS 131 1 Y 1 B GLU 132 B GLU 132 1 Y 1 B LEU 133 B LEU 133 1 Y 1 B GLY 134 B GLY 134 1 Y 1 B ASN 135 B ASN 135 1 Y 1 B GLY 136 B GLY 136 1 Y 1 B CYS 137 B CYS 137 1 Y 1 B PHE 138 B PHE 138 1 Y 1 B GLU 139 B GLU 139 1 Y 1 B PHE 140 B PHE 140 1 Y 1 B TYR 141 B TYR 141 1 Y 1 B HIS 142 B HIS 142 1 Y 1 B LYS 143 B LYS 143 1 Y 1 B CYS 144 B CYS 144 1 Y 1 B ASP 145 B ASP 145 1 Y 1 B ASN 146 B ASN 146 1 Y 1 B GLU 147 B GLU 147 1 Y 1 B CYS 148 B CYS 148 1 Y 1 B MET 149 B MET 149 1 Y 1 B GLU 150 B GLU 150 1 Y 1 B SER 151 B SER 151 1 Y 1 B VAL 152 B VAL 152 1 Y 1 B LYS 153 B LYS 153 1 Y 1 B ASN 154 B ASN 154 1 Y 1 B GLY 155 B GLY 155 1 Y 1 B THR 156 B THR 156 1 Y 1 B TYR 157 B TYR 157 1 Y 1 B ASP 158 B ASP 158 1 Y 1 B TYR 159 B TYR 159 1 Y 1 B PRO 160 B PRO 160 1 Y 1 B GLN 161 B GLN 161 1 Y 1 B TYR 162 B TYR 162 1 Y 1 B SER 163 B SER 163 1 Y 1 B GLU 164 B GLU 164 1 Y 1 B GLU 165 B GLU 165 1 Y 1 B ALA 166 B ALA 166 1 Y 1 B ARG 167 B ARG 167 1 Y 1 B LEU 168 B LEU 168 1 Y 1 B ASN 169 B ASN 169 1 Y 1 B ARG 170 B ARG 170 1 Y 1 B GLU 171 B GLU 171 1 Y 1 B GLU 172 B GLU 172 1 Y 1 B ILE 173 B ILE 173 1 Y 1 B SER 174 B SER 174 1 Y 1 B GLY 175 B GLY 175 1 Y 1 B VAL 176 B VAL 176 1 Y 1 B ARG 177 B ARG 177 1 Y 1 B SER 178 B SER 178 1 Y 1 B LEU 179 B LEU 179 1 Y 1 B VAL 180 B VAL 180 1 Y 1 B PRO 181 B PRO 181 1 Y 1 B ARG 182 B ARG 182 1 Y 1 A ARG 62 60.87 -114.10 1 A GLU 83 -34.90 138.38 1 A SER 92 -118.82 79.57 1 A ASP 96 -115.99 -92.87 1 A ARG 114 -140.13 31.44 1 A HIS 117 -162.92 117.36 1 A CYS 139 -117.55 70.81 1 A SER 146 -132.00 -157.95 1 A THR 171 -90.56 31.59 1 A GLN 196 64.87 -59.36 1 A THR 206 -118.59 -149.89 1 A ASN 240 79.85 -7.70 1 A ASN 276 65.28 -8.14 49.152 -0.83 -0.42 0.00 -0.83 0.00 1.25 0.876 0.875 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. Authors believe that the missing residues are in various orientations throughout the crystal. As a result, the maps for these regions did not allow model building. 0.25081 0.23827 0.23891 2.96 192.09 1494 28027 5.1 99.19 1.000 1.000 9.121 0.169 0.2770 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.277 0.231 0.80 0.80 1.40 MAXIMUM LIKELIHOOD MASK 2.96 192.09 16 2609 38 0 2555 0.009 0.022 2660 1.287 1.962 3610 5.939 5.000 318 41.632 25.081 124 18.488 15.000 452 23.509 15.000 10 0.086 0.200 391 0.004 0.021 2005 0.517 1.500 1597 0.991 2.000 2586 1.168 3.000 1063 2.004 4.500 1024 0.426 0.326 3.035 109 1806 20 89.61 2.950 50.000 3S13 29523 0.119 1 10.200 12.600 99.900 0.480 2.950 3.060 1 11.100 99.700 0.353 3.060 3.180 1 12.100 99.900 0.266 3.180 3.320 1 12.500 100.000 0.205 3.320 3.500 1 12.700 100.000 0.157 3.500 3.720 1 12.800 100.000 0.126 3.720 4.000 1 12.900 100.000 0.104 4.000 4.410 1 13.100 100.000 0.092 4.410 5.040 1 13.200 100.000 0.079 5.040 6.350 1 13.000 100.000 0.055 6.350 50.000 1 12.300 100.000 data scaling Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ SCALEPACK program phasing Randy J. Read cimr-phaser@lists.cam.ac.uk Wed Oct 28 14:30:30 2009 http://www-structmed.cimr.cam.ac.uk/phaser/ PHASER program 2.1.4 refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program data extraction PDB deposit@deposit.rcsb.org June 10, 2010 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.10 data collection HKL-2000 data reduction HKL-2000 Hemagglutinin HA1 chain, Hemagglutinin HA2 chain Crystal structure of H5N1 influenza virus hemagglutinin, strain YU562 crystal form 2 1 N N 2 N N 3 N N 4 N N 4 N N 5 N N 5 N N A SER 65 A SER 69 HELX_P A GLY 72 A GLY 76 1 1 8 A ASN 73 A ASN 77 HELX_P A ILE 80 A ILE 84 5 2 8 A ASP 104 A ASP 110 HELX_P A SER 113 A SER 119 1 3 10 A PRO 125 A PRO 131 HELX_P A TRP 127 A TRP 135 5 4 5 A ASP 187 A ASP 196 HELX_P A GLN 196 A GLN 205 1 5 10 B GLU 74 B GLU 74 HELX_P B LEU 101 B LEU 101 1 6 28 disulf 2.099 A CYS 52 A SG CYS 55 1_555 A CYS 277 A SG CYS 287 1_555 disulf 2.057 A CYS 64 A SG CYS 68 1_555 A CYS 76 A SG CYS 80 1_555 disulf 2.120 A CYS 97 A SG CYS 103 1_555 A CYS 139 A SG CYS 148 1_555 disulf 2.054 A CYS 281 A SG CYS 291 1_555 A CYS 305 A SG CYS 315 1_555 covale 1.429 one N-Glycosylation A ASN 169 A ND2 ASN 178 1_555 C NAG 1 C C1 NAG 1_555 covale 1.448 both C NAG 1 C O4 NAG 1_555 C NAG 2 C C1 NAG 1_555 VIRAL PROTEIN hemagglutinin, viral protein, viral envelope protein, viral fusion protein HEMA_I01A1 UNP 1 6 Q80A30 DQICIGYHANNSTEQVDTIMEKNVTVTHAQDILEKTHNGKLCDLDGVKPLILRDCSVAGWLLGNPMCDEFINVPEWSYIV EKASPANDLCYPGDFNDYEELKHLLSRINHFEKIQIIPKSSWSNHEASSGVSSACPYLGKSSFFRNVVWLIKKNSAYPTI KRSYNNTNQEDLLVLWGIHHPNDAAEQTKLYQNPTTYISVGTSTLNQRLVPKIATRSKVNGQSGRMEFFWTILKPNDAIN FESNGNFIAPEYAYKIVKKGDSAIMKSELEYGNCNTKCQTPMGAINSSMPFHNIHPLTIGECPKYVKSNRLVLATGLRNT PQR HEMA_I01A1 UNP 2 336 Q80A30 GLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDGVTNKVNSIIDKMNTQFEAVGREFNNLERRIENL NKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVKNGTYDYP QYSEEARLNREEISGV 6 328 3S13 11 326 Q80A30 A 1 14 336 336 511 3S13 1 176 Q80A30 B 2 1 176 1 expression tag ASP -2 3S13 A Q80A30 UNP 1 1 expression tag LEU -1 3S13 A Q80A30 UNP 2 1 expression tag GLY 0 3S13 A Q80A30 UNP 3 1 expression tag SER 1 3S13 A Q80A30 UNP 4 1 expression tag MET 2 3S13 A Q80A30 UNP 5 1 expression tag ALA 3 3S13 A Q80A30 UNP 6 1 expression tag ASP 4 3S13 A Q80A30 UNP 7 1 expression tag PRO 5 3S13 A Q80A30 UNP 8 1 expression tag GLY 6 3S13 A Q80A30 UNP 9 1 expression tag TYR 7 3S13 A Q80A30 UNP 10 1 expression tag LEU 8 3S13 A Q80A30 UNP 11 1 expression tag LEU 9 3S13 A Q80A30 UNP 12 1 expression tag GLU 10 3S13 A Q80A30 UNP 13 2 expression tag ARG 177 3S13 B Q80A30 UNP 177 2 expression tag SER 178 3S13 B Q80A30 UNP 178 2 expression tag LEU 179 3S13 B Q80A30 UNP 179 2 expression tag VAL 180 3S13 B Q80A30 UNP 180 2 expression tag PRO 181 3S13 B Q80A30 UNP 181 2 expression tag ARG 182 3S13 B Q80A30 UNP 182 2 3 5 5 2 4 2 2 parallel parallel parallel parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel A LEU 51 A LEU 54 A LEU 53 A LEU 57 A A TYR 274 A TYR 284 A THR 279 A THR 289 A LEU 59 A LEU 63 A ILE 60 A ILE 64 A ILE 87 A ILE 92 A GLU 89 A GLU 94 A ILE 267 A ILE 277 A LYS 269 A LYS 279 A GLY 100 A GLY 106 A PHE 102 A PHE 108 A ARG 229 A ARG 238 A LEU 237 A LEU 246 A LEU 176 A LEU 185 A HIS 184 A HIS 193 A TYR 256 A TYR 265 A LYS 263 A LYS 272 A ILE 115 A ILE 121 A GLN 122 A GLN 128 A GLY 100 A GLY 106 A PHE 102 A PHE 108 A ARG 229 A ARG 238 A LEU 237 A LEU 246 A LEU 176 A LEU 185 A HIS 184 A HIS 193 A PHE 251 A PHE 260 A PRO 254 A PRO 263 A VAL 151 A VAL 160 A TRP 153 A TRP 162 A SER 136 A SER 145 A TYR 141 A TYR 150 A LYS 144 A LYS 153 A SER 146 A SER 155 A ILE 164 A ILE 173 A ASN 169 A ASN 178 A ALA 242 A ALA 251 A SER 247 A SER 256 A ILE 202 A ILE 211 A GLY 205 A GLY 214 A ASN 210 A ASN 219 A LEU 213 A LEU 222 A CYS 281 A CYS 291 A GLN 282 A GLN 292 A ILE 302 A ILE 312 A GLY 303 A GLY 313 A PHE 294 A PHE 304 A HIS 295 A HIS 305 A LYS 307 A LYS 317 A TYR 308 A TYR 318 150 P 3 2 1