0.015140
0.000000
0.000000
0.000000
0.012009
0.000000
0.000000
0.000000
0.009488
0.00000
0.00000
0.00000
Kim, Y.
Tesar, C.
Jedrzejczak, R.
Babnigg, J.
Binkowski, T.A.
Mire, J.
Sacchettini, J.
Joachimiak, A.
Midwest Center for Structural Genomics (MCSG)
Structures of Mtb Proteins Conferring Susceptibility to Known Mtb Inhibitors (MTBI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
66.050
83.269
105.401
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C6 H8 O7
192.124
CITRIC ACID
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
C
N
75
N
O
N
76
N
O
N
77
N
C
N
78
N
C
N
79
N
O
N
80
N
C
N
81
N
C
N
82
N
O
N
83
N
O
N
84
N
C
N
85
N
O
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
R
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
S
N
101
N
O
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
N
N
110
S
C
N
111
N
C
N
112
N
O
N
113
N
C
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
N
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
N
N
130
S
C
N
131
N
C
N
132
N
O
N
133
N
C
N
134
N
C
N
135
N
C
N
136
N
O
N
137
N
O
N
138
N
O
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
N
N
149
N
C
N
150
N
C
N
151
N
O
N
152
N
O
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
S
C
N
160
N
C
N
161
N
O
N
162
N
C
Y
163
N
C
Y
164
N
N
Y
165
N
C
Y
166
N
C
Y
167
N
N
N
168
N
O
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
N
N
183
S
C
N
184
N
C
N
185
N
O
N
186
S
C
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
O
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
N
N
205
S
C
N
206
N
C
N
207
N
O
N
208
N
C
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
O
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
N
N
227
S
C
N
228
N
C
N
229
N
O
N
230
N
C
N
231
N
C
N
232
N
C
N
233
N
C
N
234
N
N
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
S
N
258
N
C
N
259
N
O
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
N
N
272
S
C
N
273
N
C
N
274
N
O
N
275
N
C
Y
276
N
C
Y
277
N
C
Y
278
N
C
Y
279
N
C
Y
280
N
C
Y
281
N
C
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
N
N
295
S
C
N
296
N
C
N
297
N
O
N
298
N
C
N
299
N
C
N
300
N
C
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
N
N
312
S
C
N
313
N
C
N
314
N
O
N
315
N
C
N
316
N
O
N
317
N
O
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
N
N
326
S
C
N
327
N
C
N
328
N
O
N
329
R
C
N
330
N
O
N
331
N
C
N
332
N
O
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
N
N
343
S
C
N
344
N
C
N
345
N
O
N
346
N
C
Y
347
N
C
Y
348
N
C
Y
349
N
C
Y
350
N
N
Y
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
N
356
N
O
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
N
N
370
S
C
N
371
N
C
N
372
N
O
N
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
N
380
N
O
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
N
N
394
S
C
N
395
N
C
N
396
N
O
N
397
N
C
N
398
N
C
N
399
N
C
N
400
N
O
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
doub
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
doub
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
doub
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
doub
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
doub
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
doub
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
Y
160
N
sing
Y
161
N
doub
Y
162
N
doub
N
163
N
sing
Y
164
N
sing
N
165
N
sing
Y
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
doub
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
doub
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
doub
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
Y
268
N
doub
Y
269
N
sing
Y
270
N
sing
N
271
N
sing
Y
272
N
doub
N
273
N
sing
Y
274
N
doub
N
275
N
sing
Y
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
doub
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
doub
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
doub
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
Y
337
N
doub
Y
338
N
sing
Y
339
N
sing
N
340
N
sing
Y
341
N
doub
Y
342
N
sing
Y
343
N
sing
N
344
N
sing
Y
345
N
sing
Y
346
N
doub
N
347
N
sing
Y
348
N
doub
N
349
N
sing
Y
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
doub
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
Y
365
N
doub
Y
366
N
sing
Y
367
N
sing
N
368
N
sing
Y
369
N
doub
N
370
N
sing
Y
371
N
doub
N
372
N
sing
Y
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
doub
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
US
Plos One
1932-6203
6
e24621
e24621
10.1371/journal.pone.0024621
21931780
Structure of Apo- and Monometalated Forms of NDM-1 A Highly Potent Carbapenem-Hydrolyzing Metallo-beta-Lactamase
2011
10.2210/pdb3sbl/pdb
pdb_00003sbl
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
mirrors
CCD
2011-04-22
ADSC QUANTUM 315r
Si(111)
SINGLE WAVELENGTH
M
x-ray
1
0.97918
1.0
19-ID
APS
0.97918
SYNCHROTRON
APS BEAMLINE 19-ID
25100.152
Beta-lactamase NDM-1
3.5.2.6
sequence database residues 39-270
1
man
polymer
192.124
CITRIC ACID
1
syn
non-polymer
18.015
water
61
nat
water
NDM-1, Metallo-beta-lactamase NDM-1
no
no
SNANYMETGDQRFGDLVFRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPV
ALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAAQHSLTFAANGWVEPATAPNFGPLKVFYPGPGHTSDN
ITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLR
SNANYMETGDQRFGDLVFRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPV
ALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAAQHSLTFAANGWVEPATAPNFGPLKVFYPGPGHTSDN
ITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLR
A
APC105101
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
blaNDM-1
573
Klebsiella pneumoniae
562
Escherichia coli
BM21 magic
plasmid
pMCSG7
1
2.89
57.39
VAPOR DIFFUSION, HANGING DROP
4.6
1.8 M Ammonium citrate dibasic, 0.1 M Sodium acetate trihydrate pH 4.6, 10 mM aztreonam, VAPOR DIFFUSION, HANGING DROP, temperature 289K
289
Midwest Center for Structural Genomics
MCSG
PSI:Biology
Structures of Mtb Proteins Conferring Susceptibility to Known Mtb Inhibitors
MTBI
PSI:Biology
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Database references
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2011-06-29
1
1
2011-07-13
1
2
2011-09-21
1
3
2012-03-28
1
4
2023-09-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
the different construct of the same protein d-38 (38 N-terminal residues were deleted)
The same construct of the same protein but different crystal form
Y
RCSB
Y
RCSB
2011-06-05
REL
REL
CIT
CITRIC ACID
HOH
water
3RKK
PDB 3RKK
PDB
experimental model
CIT
281
2
CIT
CIT
281
A
HOH
1
3
HOH
HOH
1
A
HOH
2
3
HOH
HOH
2
A
HOH
3
3
HOH
HOH
3
A
HOH
4
3
HOH
HOH
4
A
HOH
5
3
HOH
HOH
5
A
HOH
6
3
HOH
HOH
6
A
HOH
7
3
HOH
HOH
7
A
HOH
8
3
HOH
HOH
8
A
HOH
9
3
HOH
HOH
9
A
HOH
10
3
HOH
HOH
10
A
HOH
11
3
HOH
HOH
11
A
HOH
12
3
HOH
HOH
12
A
HOH
13
3
HOH
HOH
13
A
HOH
14
3
HOH
HOH
14
A
HOH
15
3
HOH
HOH
15
A
HOH
16
3
HOH
HOH
16
A
HOH
17
3
HOH
HOH
17
A
HOH
18
3
HOH
HOH
18
A
HOH
19
3
HOH
HOH
19
A
HOH
20
3
HOH
HOH
20
A
HOH
21
3
HOH
HOH
21
A
HOH
22
3
HOH
HOH
22
A
HOH
23
3
HOH
HOH
23
A
HOH
24
3
HOH
HOH
24
A
HOH
25
3
HOH
HOH
25
A
HOH
26
3
HOH
HOH
26
A
HOH
27
3
HOH
HOH
27
A
HOH
28
3
HOH
HOH
28
A
HOH
29
3
HOH
HOH
29
A
HOH
30
3
HOH
HOH
30
A
HOH
31
3
HOH
HOH
31
A
HOH
32
3
HOH
HOH
32
A
HOH
33
3
HOH
HOH
33
A
HOH
34
3
HOH
HOH
271
A
HOH
35
3
HOH
HOH
272
A
HOH
36
3
HOH
HOH
273
A
HOH
37
3
HOH
HOH
274
A
HOH
38
3
HOH
HOH
275
A
HOH
39
3
HOH
HOH
276
A
HOH
40
3
HOH
HOH
277
A
HOH
41
3
HOH
HOH
278
A
HOH
42
3
HOH
HOH
279
A
HOH
43
3
HOH
HOH
280
A
HOH
44
3
HOH
HOH
282
A
HOH
45
3
HOH
HOH
283
A
HOH
46
3
HOH
HOH
284
A
HOH
47
3
HOH
HOH
285
A
HOH
48
3
HOH
HOH
286
A
HOH
49
3
HOH
HOH
287
A
HOH
50
3
HOH
HOH
288
A
HOH
51
3
HOH
HOH
289
A
HOH
52
3
HOH
HOH
290
A
HOH
53
3
HOH
HOH
291
A
HOH
54
3
HOH
HOH
292
A
HOH
55
3
HOH
HOH
293
A
HOH
56
3
HOH
HOH
294
A
HOH
57
3
HOH
HOH
295
A
HOH
58
3
HOH
HOH
296
A
HOH
59
3
HOH
HOH
297
A
HOH
60
3
HOH
HOH
298
A
HOH
61
3
HOH
HOH
299
A
n
1
34
A
n
2
35
A
n
3
36
A
n
4
37
A
TYR
38
n
5
TYR
38
A
MET
39
n
6
MET
39
A
GLU
40
n
7
GLU
40
A
THR
41
n
8
THR
41
A
GLY
42
n
9
GLY
42
A
ASP
43
n
10
ASP
43
A
GLN
44
n
11
GLN
44
A
ARG
45
n
12
ARG
45
A
PHE
46
n
13
PHE
46
A
GLY
47
n
14
GLY
47
A
ASP
48
n
15
ASP
48
A
LEU
49
n
16
LEU
49
A
VAL
50
n
17
VAL
50
A
PHE
51
n
18
PHE
51
A
ARG
52
n
19
ARG
52
A
GLN
53
n
20
GLN
53
A
LEU
54
n
21
LEU
54
A
ALA
55
n
22
ALA
55
A
PRO
56
n
23
PRO
56
A
ASN
57
n
24
ASN
57
A
VAL
58
n
25
VAL
58
A
TRP
59
n
26
TRP
59
A
GLN
60
n
27
GLN
60
A
HIS
61
n
28
HIS
61
A
THR
62
n
29
THR
62
A
SER
63
n
30
SER
63
A
TYR
64
n
31
TYR
64
A
LEU
65
n
32
LEU
65
A
ASP
66
n
33
ASP
66
A
MET
67
n
34
MET
67
A
PRO
68
n
35
PRO
68
A
GLY
69
n
36
GLY
69
A
PHE
70
n
37
PHE
70
A
GLY
71
n
38
GLY
71
A
ALA
72
n
39
ALA
72
A
VAL
73
n
40
VAL
73
A
ALA
74
n
41
ALA
74
A
SER
75
n
42
SER
75
A
ASN
76
n
43
ASN
76
A
GLY
77
n
44
GLY
77
A
LEU
78
n
45
LEU
78
A
ILE
79
n
46
ILE
79
A
VAL
80
n
47
VAL
80
A
ARG
81
n
48
ARG
81
A
ASP
82
n
49
ASP
82
A
GLY
83
n
50
GLY
83
A
GLY
84
n
51
GLY
84
A
ARG
85
n
52
ARG
85
A
VAL
86
n
53
VAL
86
A
LEU
87
n
54
LEU
87
A
VAL
88
n
55
VAL
88
A
VAL
89
n
56
VAL
89
A
ASP
90
n
57
ASP
90
A
THR
91
n
58
THR
91
A
ALA
92
n
59
ALA
92
A
TRP
93
n
60
TRP
93
A
THR
94
n
61
THR
94
A
ASP
95
n
62
ASP
95
A
ASP
96
n
63
ASP
96
A
GLN
97
n
64
GLN
97
A
THR
98
n
65
THR
98
A
ALA
99
n
66
ALA
99
A
GLN
100
n
67
GLN
100
A
ILE
101
n
68
ILE
101
A
LEU
102
n
69
LEU
102
A
ASN
103
n
70
ASN
103
A
TRP
104
n
71
TRP
104
A
ILE
105
n
72
ILE
105
A
LYS
106
n
73
LYS
106
A
GLN
107
n
74
GLN
107
A
GLU
108
n
75
GLU
108
A
ILE
109
n
76
ILE
109
A
ASN
110
n
77
ASN
110
A
LEU
111
n
78
LEU
111
A
PRO
112
n
79
PRO
112
A
VAL
113
n
80
VAL
113
A
ALA
114
n
81
ALA
114
A
LEU
115
n
82
LEU
115
A
ALA
116
n
83
ALA
116
A
VAL
117
n
84
VAL
117
A
VAL
118
n
85
VAL
118
A
THR
119
n
86
THR
119
A
HIS
120
n
87
HIS
120
A
ALA
121
n
88
ALA
121
A
HIS
122
n
89
HIS
122
A
GLN
123
n
90
GLN
123
A
ASP
124
n
91
ASP
124
A
LYS
125
n
92
LYS
125
A
MET
126
n
93
MET
126
A
GLY
127
n
94
GLY
127
A
GLY
128
n
95
GLY
128
A
MET
129
n
96
MET
129
A
ASP
130
n
97
ASP
130
A
ALA
131
n
98
ALA
131
A
LEU
132
n
99
LEU
132
A
HIS
133
n
100
HIS
133
A
ALA
134
n
101
ALA
134
A
ALA
135
n
102
ALA
135
A
GLY
136
n
103
GLY
136
A
ILE
137
n
104
ILE
137
A
ALA
138
n
105
ALA
138
A
THR
139
n
106
THR
139
A
TYR
140
n
107
TYR
140
A
ALA
141
n
108
ALA
141
A
ASN
142
n
109
ASN
142
A
ALA
143
n
110
ALA
143
A
LEU
144
n
111
LEU
144
A
SER
145
n
112
SER
145
A
ASN
146
n
113
ASN
146
A
GLN
147
n
114
GLN
147
A
LEU
148
n
115
LEU
148
A
ALA
149
n
116
ALA
149
A
PRO
150
n
117
PRO
150
A
GLN
151
n
118
GLN
151
A
GLU
152
n
119
GLU
152
A
GLY
153
n
120
GLY
153
A
MET
154
n
121
MET
154
A
VAL
155
n
122
VAL
155
A
ALA
156
n
123
ALA
156
A
ALA
157
n
124
ALA
157
A
GLN
158
n
125
GLN
158
A
HIS
159
n
126
HIS
159
A
SER
160
n
127
SER
160
A
LEU
161
n
128
LEU
161
A
THR
162
n
129
THR
162
A
PHE
163
n
130
PHE
163
A
ALA
164
n
131
ALA
164
A
ALA
165
n
132
ALA
165
A
ASN
166
n
133
ASN
166
A
GLY
167
n
134
GLY
167
A
TRP
168
n
135
TRP
168
A
VAL
169
n
136
VAL
169
A
GLU
170
n
137
GLU
170
A
PRO
171
n
138
PRO
171
A
ALA
172
n
139
ALA
172
A
THR
173
n
140
THR
173
A
ALA
174
n
141
ALA
174
A
PRO
175
n
142
PRO
175
A
ASN
176
n
143
ASN
176
A
PHE
177
n
144
PHE
177
A
GLY
178
n
145
GLY
178
A
PRO
179
n
146
PRO
179
A
LEU
180
n
147
LEU
180
A
LYS
181
n
148
LYS
181
A
VAL
182
n
149
VAL
182
A
PHE
183
n
150
PHE
183
A
TYR
184
n
151
TYR
184
A
PRO
185
n
152
PRO
185
A
GLY
186
n
153
GLY
186
A
PRO
187
n
154
PRO
187
A
GLY
188
n
155
GLY
188
A
HIS
189
n
156
HIS
189
A
THR
190
n
157
THR
190
A
SER
191
n
158
SER
191
A
ASP
192
n
159
ASP
192
A
ASN
193
n
160
ASN
193
A
ILE
194
n
161
ILE
194
A
THR
195
n
162
THR
195
A
VAL
196
n
163
VAL
196
A
GLY
197
n
164
GLY
197
A
ILE
198
n
165
ILE
198
A
ASP
199
n
166
ASP
199
A
GLY
200
n
167
GLY
200
A
THR
201
n
168
THR
201
A
ASP
202
n
169
ASP
202
A
ILE
203
n
170
ILE
203
A
ALA
204
n
171
ALA
204
A
PHE
205
n
172
PHE
205
A
GLY
206
n
173
GLY
206
A
GLY
207
n
174
GLY
207
A
CYS
208
n
175
CYS
208
A
LEU
209
n
176
LEU
209
A
ILE
210
n
177
ILE
210
A
LYS
211
n
178
LYS
211
A
ASP
212
n
179
ASP
212
A
SER
213
n
180
SER
213
A
LYS
214
n
181
LYS
214
A
ALA
215
n
182
ALA
215
A
LYS
216
n
183
LYS
216
A
SER
217
n
184
SER
217
A
LEU
218
n
185
LEU
218
A
GLY
219
n
186
GLY
219
A
ASN
220
n
187
ASN
220
A
LEU
221
n
188
LEU
221
A
GLY
222
n
189
GLY
222
A
ASP
223
n
190
ASP
223
A
ALA
224
n
191
ALA
224
A
ASP
225
n
192
ASP
225
A
THR
226
n
193
THR
226
A
GLU
227
n
194
GLU
227
A
HIS
228
n
195
HIS
228
A
TYR
229
n
196
TYR
229
A
ALA
230
n
197
ALA
230
A
ALA
231
n
198
ALA
231
A
SER
232
n
199
SER
232
A
ALA
233
n
200
ALA
233
A
ARG
234
n
201
ARG
234
A
ALA
235
n
202
ALA
235
A
PHE
236
n
203
PHE
236
A
GLY
237
n
204
GLY
237
A
ALA
238
n
205
ALA
238
A
ALA
239
n
206
ALA
239
A
PHE
240
n
207
PHE
240
A
PRO
241
n
208
PRO
241
A
LYS
242
n
209
LYS
242
A
ALA
243
n
210
ALA
243
A
SER
244
n
211
SER
244
A
MET
245
n
212
MET
245
A
ILE
246
n
213
ILE
246
A
VAL
247
n
214
VAL
247
A
MET
248
n
215
MET
248
A
SER
249
n
216
SER
249
A
HIS
250
n
217
HIS
250
A
SER
251
n
218
SER
251
A
ALA
252
n
219
ALA
252
A
PRO
253
n
220
PRO
253
A
ASP
254
n
221
ASP
254
A
SER
255
n
222
SER
255
A
ARG
256
n
223
ARG
256
A
ALA
257
n
224
ALA
257
A
ALA
258
n
225
ALA
258
A
ILE
259
n
226
ILE
259
A
THR
260
n
227
THR
260
A
HIS
261
n
228
HIS
261
A
THR
262
n
229
THR
262
A
ALA
263
n
230
ALA
263
A
ARG
264
n
231
ARG
264
A
MET
265
n
232
MET
265
A
ALA
266
n
233
ALA
266
A
ASP
267
n
234
ASP
267
A
LYS
268
n
235
LYS
268
A
LEU
269
n
236
LEU
269
A
n
237
270
A
4.6534
-0.0275
-0.0827
3.6783
-1.7089
4.4615
-0.1572
0.4323
-0.1042
-0.2448
0.2660
-0.0231
0.0526
-0.1347
-0.0497
0.1907
-0.0203
0.0096
0.3762
0.0819
0.3909
refined
-8.0321
-18.2812
-49.9851
X-RAY DIFFRACTION
4.8974
1.1958
-1.1284
3.1524
-0.0841
3.5721
0.1815
0.1926
0.2211
0.0002
0.1089
0.2502
-0.1699
-0.3170
-0.2451
0.1878
0.0160
-0.0018
0.2710
0.0578
0.3180
refined
-13.6370
-15.8996
-40.1375
X-RAY DIFFRACTION
8.1091
-1.7112
0.6768
1.3942
-0.8387
4.2565
0.0900
-0.4958
0.0953
-0.0510
0.1786
-0.0452
-0.3314
0.1740
-0.2895
0.3430
-0.0315
0.0847
0.3084
-0.0373
0.3381
refined
-6.4270
-16.9236
-25.8326
X-RAY DIFFRACTION
7.1782
4.2083
0.3763
9.2479
1.9365
5.1065
-0.3415
-0.4050
0.0821
0.0647
-0.0167
0.3634
-0.0018
-0.2141
0.3395
0.2245
0.0849
-0.0050
0.3250
0.0300
0.2376
refined
1.8923
-20.6758
-37.7643
X-RAY DIFFRACTION
3.8725
1.7421
2.0658
2.8156
-0.6000
5.4249
-0.3566
0.0920
0.7686
0.1199
-0.0999
-0.0690
-0.4368
0.3202
0.4751
0.2373
0.0304
-0.0401
0.3284
0.0541
0.4501
refined
9.1522
-13.1311
-35.2146
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
chain 'A' and (resseq 38:67)
X-RAY DIFFRACTION
2
chain 'A' and (resseq 68:137)
X-RAY DIFFRACTION
3
chain 'A' and (resseq 138:194)
X-RAY DIFFRACTION
4
chain 'A' and (resseq 195:212)
X-RAY DIFFRACTION
5
chain 'A' and (resseq 213:269)
author_defined_assembly
1
monomeric
software_defined_assembly
PISA
4
tetrameric
software_defined_assembly
PISA
2
dimeric
10010
-36
32520
2240
-16
18410
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_555
-x,-y,z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
3_554
-x,y,-z-1
crystal symmetry operation
0.0000000000
0.0000000000
-105.4010000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_554
x,-y,-z-1
crystal symmetry operation
0.0000000000
0.0000000000
-105.4010000000
A
N
GLN
44
A
N
GLN
11
A
O
PHE
51
A
O
PHE
18
A
N
ARG
52
A
N
ARG
19
A
O
GLN
60
A
O
GLN
27
A
N
TRP
59
A
N
TRP
26
A
O
ILE
79
A
O
ILE
46
A
N
LEU
78
A
N
LEU
45
A
O
VAL
89
A
O
VAL
56
A
N
VAL
88
A
N
VAL
55
A
O
VAL
117
A
O
VAL
84
A
N
ALA
116
A
N
ALA
83
A
O
TYR
140
A
O
TYR
107
A
N
ALA
141
A
N
ALA
108
A
O
LEU
161
A
O
LEU
128
A
N
LYS
181
A
N
LYS
148
A
O
GLY
197
A
O
GLY
164
A
N
VAL
196
A
N
VAL
163
A
O
PHE
205
A
O
PHE
172
A
N
ALA
204
A
N
ALA
171
A
O
VAL
247
A
O
VAL
214
1
A
SER
34
A
SER
1
1
Y
1
A
ASN
35
A
ASN
2
1
Y
1
A
ALA
36
A
ALA
3
1
Y
1
A
ASN
37
A
ASN
4
1
Y
1
A
ARG
270
A
ARG
237
1
Y
1
10.27
1.50
119.30
129.57
A
A
A
C
N
CA
TYR
PRO
PRO
184
185
185
Y
1
A
ASP
90
50.21
-154.52
1
A
ILE
109
-127.71
-56.63
50.6
-18.9206
0.0000
0.0000
2.3617
-0.0000
16.5589
0.260
0.200
0.203
0.203
2.310
36.923
596
12300
12300
4.85
93.93
0.68
random
1
mixed
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
32.21
1.06
1.30
PDB 3RKK
ML
FLAT BULK SOLVENT MODEL
34.585
0.322
2.310
36.923
61
1800
13
0
1726
0.012
1800
1.520
2456
16.639
625
0.104
270
0.009
327
0.4231
0.3026
2.5426
114
2499
2613
81.00
0.2527
0.2546
2.9104
157
2983
3140
97.00
0.3117
0.1945
3.6663
153
3065
3218
99.00
0.2086
0.1663
36.9280
172
3157
3329
98.00
36.45
2.3
50
3SBL
12326
12326
0.0
0.0
0.091
1
11.9
3.4
95.5
2.3
2.34
3.4
528
0.334
1
3.2
84.3
data collection
SBC-Collect
data collection
HKL-3000
phasing
HKL-3000
phasing
MOLREP
refinement
PHENIX
(phenix.refine: dev_761)
data reduction
HKL-3000
data scaling
HKL-3000
Crystal Structure of New Delhi Metal-beta-lactamase-1 from Klebsiella pneumoniae
1
N
N
2
N
N
3
N
N
A
THR
94
A
THR
61
HELX_P
A
ILE
109
A
ILE
76
1
1
16
A
HIS
122
A
HIS
89
HELX_P
A
GLY
127
A
GLY
94
1
2
6
A
GLY
128
A
GLY
95
HELX_P
A
ALA
135
A
ALA
102
1
3
8
A
ALA
143
A
ALA
110
HELX_P
A
ALA
149
A
ALA
116
1
4
7
A
GLU
170
A
GLU
137
HELX_P
A
ALA
174
A
ALA
141
5
5
5
A
HIS
228
A
HIS
195
HELX_P
A
PHE
240
A
PHE
207
1
6
13
A
ARG
256
A
ARG
223
HELX_P
A
LYS
268
A
LYS
235
1
7
13
HYDROLASE
Structural Genomics, PSI-Biology, Midwest Center for Structural Genomics, MCSG, alpha-beta structure, hydrolase, Structures of Mtb Proteins Conferring Susceptibility to Known Mtb Inhibitors, MTBI
BLAN1_KLEPN
UNP
1
39
C7C422
METGDQRFGDLVFRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVV
THAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAAQHSLTFAANGWVEPATAPNFGPLKVFYPGPGHTSDNITVGI
DGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLR
39
270
3SBL
39
270
C7C422
A
1
6
237
1
expression tag
SER
34
3SBL
A
C7C422
UNP
1
1
expression tag
ASN
35
3SBL
A
C7C422
UNP
2
1
expression tag
ALA
36
3SBL
A
C7C422
UNP
3
1
expression tag
ASN
37
3SBL
A
C7C422
UNP
4
1
expression tag
TYR
38
3SBL
A
C7C422
UNP
5
8
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
parallel
A
GLN
44
A
GLN
11
A
PHE
46
A
PHE
13
A
LEU
49
A
LEU
16
A
ALA
55
A
ALA
22
A
VAL
58
A
VAL
25
A
MET
67
A
MET
34
A
GLY
71
A
GLY
38
A
ASP
82
A
ASP
49
A
ARG
85
A
ARG
52
A
VAL
89
A
VAL
56
A
VAL
113
A
VAL
80
A
VAL
118
A
VAL
85
A
ALA
138
A
ALA
105
A
ASN
142
A
ASN
109
A
HIS
159
A
HIS
126
A
LEU
161
A
LEU
128
A
LEU
180
A
LEU
147
A
PHE
183
A
PHE
150
A
THR
195
A
THR
162
A
ILE
198
A
ILE
165
A
ILE
203
A
ILE
170
A
GLY
207
A
GLY
174
A
MET
245
A
MET
212
A
MET
248
A
MET
215
BINDING SITE FOR RESIDUE CIT A 281
A
CIT
281
Software
11
A
ASP
43
A
ASP
10
11
1_555
A
VAL
50
A
VAL
17
11
1_555
A
ARG
52
A
ARG
19
11
1_555
A
GLN
60
A
GLN
27
11
1_555
A
THR
62
A
THR
29
11
1_555
A
ASN
76
A
ASN
43
11
1_555
A
SER
251
A
SER
218
11
1_555
A
ALA
252
A
ALA
219
11
3_554
A
ALA
252
A
ALA
219
11
1_555
A
PRO
253
A
PRO
220
11
1_555
A
HOH
299
C
HOH
11
3_554
23
I 2 2 2