0.009438
0.005449
0.000000
0.000000
0.010898
0.000000
0.000000
0.000000
0.011869
0.000000
0.000000
0.000000
Koutmos, M.
Gherasim, C.
Smith, J.L.
Banerjee, R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.000
90.000
120.000
105.955
105.955
84.253
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C63 H91 Co N13 O14 P 1
1344.382
CO-METHYLCOBALAMIN
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CO
N
75
N
N
N
76
N
N
N
77
N
N
N
78
N
N
N
79
R
C
N
80
N
C
N
81
S
C
N
82
N
C
N
83
N
C
N
84
N
C
N
85
N
O
N
86
N
N
N
87
S
C
N
88
N
C
N
89
N
C
N
90
N
C
N
91
N
O
N
92
N
N
N
93
N
C
N
94
N
C
N
95
N
C
N
96
N
C
N
97
S
C
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
N
N
103
S
C
N
104
N
C
N
105
N
C
N
106
N
C
N
107
N
O
N
108
N
N
N
109
N
C
N
110
N
C
N
111
N
C
N
112
N
C
N
113
N
C
N
114
N
C
N
115
S
C
N
116
N
C
N
117
N
C
N
118
N
C
N
119
N
O
N
120
N
N
N
121
N
C
N
122
N
C
N
123
N
C
N
124
N
C
N
125
R
C
N
126
N
C
N
127
N
C
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
N
N
132
R
C
N
133
N
C
N
134
N
C
N
135
N
O
N
136
N
N
N
137
N
C
N
138
N
C
N
139
R
C
N
140
N
C
N
141
N
O
N
142
N
O
N
143
N
O
N
144
S
P
N
145
N
O
N
146
S
C
N
147
R
C
N
148
N
O
N
149
S
C
N
150
N
O
N
151
R
C
N
152
N
C
N
153
N
O
Y
154
N
N
Y
155
N
C
Y
156
N
C
Y
157
N
N
Y
158
N
C
Y
159
N
C
Y
160
N
C
N
161
N
C
Y
162
N
C
N
163
N
C
Y
164
N
C
N
165
N
C
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
N
N
258
R
C
N
259
N
C
N
260
N
O
N
261
N
C
N
262
N
S
N
263
N
O
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
N
N
272
S
C
N
273
N
C
N
274
N
O
N
275
N
C
N
276
N
C
N
277
N
C
N
278
N
O
N
279
N
N
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
N
N
292
S
C
N
293
N
C
N
294
N
O
N
295
N
C
N
296
N
C
N
297
N
C
N
298
N
O
N
299
N
O
N
300
N
O
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
N
N
311
N
C
N
312
N
C
N
313
N
O
N
314
N
O
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
N
N
321
S
C
N
322
N
C
N
323
N
O
N
324
N
C
Y
325
N
C
Y
326
N
N
Y
327
N
C
Y
328
N
C
Y
329
N
N
N
330
N
O
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
O
N
342
N
H
N
343
N
H
N
344
N
N
N
345
S
C
N
346
N
C
N
347
N
O
N
348
S
C
N
349
N
C
N
350
N
C
N
351
N
C
N
352
N
O
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
N
N
367
S
C
N
368
N
C
N
369
N
O
N
370
N
C
N
371
N
C
N
372
N
C
N
373
N
C
N
374
N
O
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
N
N
389
S
C
N
390
N
C
N
391
N
O
N
392
N
C
N
393
N
C
N
394
N
C
N
395
N
C
N
396
N
N
N
397
N
O
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
N
N
414
S
C
N
415
N
C
N
416
N
O
N
417
N
C
N
418
N
C
N
419
N
S
N
420
N
C
N
421
N
O
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
N
N
434
S
C
N
435
N
C
N
436
N
O
N
437
N
C
Y
438
N
C
Y
439
N
C
Y
440
N
C
Y
441
N
C
Y
442
N
C
Y
443
N
C
N
444
N
O
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
N
N
457
S
C
N
458
N
C
N
459
N
O
N
460
N
C
N
461
N
C
N
462
N
C
N
463
N
O
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
N
N
474
S
C
N
475
N
C
N
476
N
O
N
477
N
C
N
478
N
O
N
479
N
O
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
N
N
488
S
C
N
489
N
C
N
490
N
O
N
491
R
C
N
492
N
O
N
493
N
C
N
494
N
O
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
N
N
505
S
C
N
506
N
C
N
507
N
O
N
508
N
C
Y
509
N
C
Y
510
N
C
Y
511
N
C
Y
512
N
N
Y
513
N
C
Y
514
N
C
Y
515
N
C
Y
516
N
C
Y
517
N
C
N
518
N
O
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
H
N
523
N
H
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
H
N
530
N
H
N
531
N
N
N
532
S
C
N
533
N
C
N
534
N
O
N
535
N
C
Y
536
N
C
Y
537
N
C
Y
538
N
C
Y
539
N
C
Y
540
N
C
Y
541
N
C
N
542
N
O
N
543
N
O
N
544
N
H
N
545
N
H
N
546
N
H
N
547
N
H
N
548
N
H
N
549
N
H
N
550
N
H
N
551
N
H
N
552
N
H
N
553
N
H
N
554
N
H
N
555
N
N
N
556
S
C
N
557
N
C
N
558
N
O
N
559
N
C
N
560
N
C
N
561
N
C
N
562
N
O
N
563
N
H
N
564
N
H
N
565
N
H
N
566
N
H
N
567
N
H
N
568
N
H
N
569
N
H
N
570
N
H
N
571
N
H
N
572
N
H
N
573
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
doub
N
79
N
sing
N
80
N
doub
N
81
N
sing
N
82
N
doub
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
doub
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
doub
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
doub
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
doub
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
Y
239
N
sing
Y
240
N
sing
Y
241
N
doub
Y
242
N
sing
Y
243
N
doub
N
244
N
sing
Y
245
N
sing
Y
246
N
sing
Y
247
N
doub
N
248
N
sing
N
249
N
sing
Y
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
Y
255
N
doub
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
doub
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
doub
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
doub
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
doub
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
doub
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
doub
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
Y
333
N
sing
Y
334
N
doub
Y
335
N
doub
N
336
N
sing
Y
337
N
sing
N
338
N
sing
Y
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
doub
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
doub
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
doub
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
doub
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
Y
441
N
doub
Y
442
N
sing
Y
443
N
sing
N
444
N
sing
Y
445
N
doub
N
446
N
sing
Y
447
N
doub
N
448
N
sing
Y
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
doub
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
doub
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
doub
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
doub
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
Y
510
N
doub
Y
511
N
sing
Y
512
N
sing
N
513
N
sing
Y
514
N
doub
Y
515
N
sing
Y
516
N
sing
N
517
N
sing
Y
518
N
sing
Y
519
N
doub
N
520
N
sing
Y
521
N
doub
N
522
N
sing
Y
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
doub
N
534
N
sing
N
535
N
sing
N
536
N
sing
N
537
N
sing
Y
538
N
doub
Y
539
N
sing
Y
540
N
sing
N
541
N
sing
Y
542
N
doub
N
543
N
sing
Y
544
N
doub
N
545
N
sing
Y
546
N
sing
N
547
N
sing
N
548
N
sing
N
549
N
sing
N
550
N
sing
N
551
N
sing
N
552
N
sing
N
553
N
sing
N
554
N
sing
N
555
N
sing
N
556
N
sing
N
557
N
doub
N
558
N
sing
N
559
N
sing
N
560
N
sing
N
561
N
sing
N
562
N
sing
N
563
N
sing
N
564
N
sing
N
565
N
sing
N
566
N
sing
N
567
N
sing
N
568
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
286
29780
29787
10.1074/jbc.M111.261370
21697092
Structural basis of multifunctionality in a vitamin B12-processing enzyme.
2011
10.2210/pdb3sc0/pdb
pdb_00003sc0
100
1
K-B pair of biomorph mirrors for vertical and horizontal focusing
CCD
2010-07-29
MARMOSAIC 300 mm CCD
double crystal monochromator
SINGLE WAVELENGTH
M
x-ray
1
1.03299
1.0
23-ID-D
APS
1.03299
SYNCHROTRON
APS BEAMLINE 23-ID-D
27489.512
Methylmalonic aciduria and homocystinuria type C protein
B12 binding domain, Residues 1-238
1
man
polymer
1344.382
CO-METHYLCOBALAMIN
1
syn
non-polymer
18.015
water
179
nat
water
no
no
SNAMEPKVAELKQKIEDTLCPFGFEVYPFQVAWYNELLPPAFHLPLPGPTLAFLVLSTPAMFDRALKPFLQSCHLRMLTD
PVDQCVAYHLGRVRESLPELQIEIIADYEVHPNRRPKILAQTAAHVAGAAYYYQRQDVEADPWGNQRISGVCIHPRFGGW
FAIRGVVLLPGIEVPDLPPRKPHDCVPTRADRIALLEGFNFHWRDWTYRDAVTPQERYSEEQKAYFSTPPAQRLALLGLA
Q
SNAMEPKVAELKQKIEDTLCPFGFEVYPFQVAWYNELLPPAFHLPLPGPTLAFLVLSTPAMFDRALKPFLQSCHLRMLTD
PVDQCVAYHLGRVRESLPELQIEIIADYEVHPNRRPKILAQTAAHVAGAAYYYQRQDVEADPWGNQRISGVCIHPRFGGW
FAIRGVVLLPGIEVPDLPPRKPHDCVPTRADRIALLEGFNFHWRDWTYRDAVTPQERYSEEQKAYFSTPPAQRLALLGLA
Q
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
MMACHC
9606
Homo sapiens
562
Escherichia coli
BL21
plasmid
pMCSG7
1
2.48
50.47
VAPOR DIFFUSION
8.5
2.0 M ammonium sulfate, and 0.1 M Tris.HCl pH 8.5, vapor diffusion, temperature 277K
277
software
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Database references
Database references
Refinement description
Data collection
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2011-06-22
1
1
2011-07-13
1
2
2011-08-10
1
3
2012-04-25
1
4
2017-11-08
1
5
2019-07-17
1
6
2023-09-13
_software.classification
_software.contact_author
_software.contact_author_email
_software.location
_software.name
_software.type
_software.version
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2011-06-06
REL
REL
COB
CO-METHYLCOBALAMIN
HOH
water
3SBY
PDB
experimental model
COB
300
2
COB
COB
300
A
HOH
1
3
HOH
HOH
239
A
HOH
2
3
HOH
HOH
240
A
HOH
3
3
HOH
HOH
241
A
HOH
4
3
HOH
HOH
242
A
HOH
5
3
HOH
HOH
243
A
HOH
6
3
HOH
HOH
244
A
HOH
7
3
HOH
HOH
245
A
HOH
8
3
HOH
HOH
246
A
HOH
9
3
HOH
HOH
247
A
HOH
10
3
HOH
HOH
248
A
HOH
11
3
HOH
HOH
249
A
HOH
12
3
HOH
HOH
250
A
HOH
13
3
HOH
HOH
251
A
HOH
14
3
HOH
HOH
252
A
HOH
15
3
HOH
HOH
253
A
HOH
16
3
HOH
HOH
254
A
HOH
17
3
HOH
HOH
255
A
HOH
18
3
HOH
HOH
256
A
HOH
19
3
HOH
HOH
257
A
HOH
20
3
HOH
HOH
258
A
HOH
21
3
HOH
HOH
259
A
HOH
22
3
HOH
HOH
260
A
HOH
23
3
HOH
HOH
261
A
HOH
24
3
HOH
HOH
262
A
HOH
25
3
HOH
HOH
263
A
HOH
26
3
HOH
HOH
264
A
HOH
27
3
HOH
HOH
265
A
HOH
28
3
HOH
HOH
266
A
HOH
29
3
HOH
HOH
267
A
HOH
30
3
HOH
HOH
268
A
HOH
31
3
HOH
HOH
269
A
HOH
32
3
HOH
HOH
270
A
HOH
33
3
HOH
HOH
271
A
HOH
34
3
HOH
HOH
272
A
HOH
35
3
HOH
HOH
273
A
HOH
36
3
HOH
HOH
274
A
HOH
37
3
HOH
HOH
275
A
HOH
38
3
HOH
HOH
276
A
HOH
39
3
HOH
HOH
277
A
HOH
40
3
HOH
HOH
278
A
HOH
41
3
HOH
HOH
279
A
HOH
42
3
HOH
HOH
280
A
HOH
43
3
HOH
HOH
281
A
HOH
44
3
HOH
HOH
282
A
HOH
45
3
HOH
HOH
283
A
HOH
46
3
HOH
HOH
284
A
HOH
47
3
HOH
HOH
285
A
HOH
48
3
HOH
HOH
286
A
HOH
49
3
HOH
HOH
287
A
HOH
50
3
HOH
HOH
288
A
HOH
51
3
HOH
HOH
289
A
HOH
52
3
HOH
HOH
290
A
HOH
53
3
HOH
HOH
291
A
HOH
54
3
HOH
HOH
292
A
HOH
55
3
HOH
HOH
293
A
HOH
56
3
HOH
HOH
294
A
HOH
57
3
HOH
HOH
295
A
HOH
58
3
HOH
HOH
296
A
HOH
59
3
HOH
HOH
297
A
HOH
60
3
HOH
HOH
298
A
HOH
61
3
HOH
HOH
299
A
HOH
62
3
HOH
HOH
301
A
HOH
63
3
HOH
HOH
302
A
HOH
64
3
HOH
HOH
303
A
HOH
65
3
HOH
HOH
304
A
HOH
66
3
HOH
HOH
305
A
HOH
67
3
HOH
HOH
306
A
HOH
68
3
HOH
HOH
307
A
HOH
69
3
HOH
HOH
308
A
HOH
70
3
HOH
HOH
309
A
HOH
71
3
HOH
HOH
310
A
HOH
72
3
HOH
HOH
311
A
HOH
73
3
HOH
HOH
312
A
HOH
74
3
HOH
HOH
313
A
HOH
75
3
HOH
HOH
314
A
HOH
76
3
HOH
HOH
315
A
HOH
77
3
HOH
HOH
316
A
HOH
78
3
HOH
HOH
317
A
HOH
79
3
HOH
HOH
318
A
HOH
80
3
HOH
HOH
319
A
HOH
81
3
HOH
HOH
320
A
HOH
82
3
HOH
HOH
321
A
HOH
83
3
HOH
HOH
322
A
HOH
84
3
HOH
HOH
323
A
HOH
85
3
HOH
HOH
324
A
HOH
86
3
HOH
HOH
325
A
HOH
87
3
HOH
HOH
326
A
HOH
88
3
HOH
HOH
327
A
HOH
91
3
HOH
HOH
328
A
HOH
92
3
HOH
HOH
329
A
HOH
93
3
HOH
HOH
330
A
HOH
94
3
HOH
HOH
331
A
HOH
95
3
HOH
HOH
332
A
HOH
96
3
HOH
HOH
333
A
HOH
97
3
HOH
HOH
334
A
HOH
98
3
HOH
HOH
335
A
HOH
99
3
HOH
HOH
336
A
HOH
101
3
HOH
HOH
337
A
HOH
102
3
HOH
HOH
338
A
HOH
103
3
HOH
HOH
339
A
HOH
104
3
HOH
HOH
340
A
HOH
105
3
HOH
HOH
341
A
HOH
106
3
HOH
HOH
342
A
HOH
107
3
HOH
HOH
343
A
HOH
108
3
HOH
HOH
344
A
HOH
110
3
HOH
HOH
345
A
HOH
111
3
HOH
HOH
346
A
HOH
112
3
HOH
HOH
347
A
HOH
113
3
HOH
HOH
348
A
HOH
114
3
HOH
HOH
349
A
HOH
115
3
HOH
HOH
350
A
HOH
116
3
HOH
HOH
351
A
HOH
117
3
HOH
HOH
352
A
HOH
118
3
HOH
HOH
353
A
HOH
119
3
HOH
HOH
354
A
HOH
120
3
HOH
HOH
355
A
HOH
121
3
HOH
HOH
356
A
HOH
122
3
HOH
HOH
357
A
HOH
124
3
HOH
HOH
358
A
HOH
125
3
HOH
HOH
359
A
HOH
126
3
HOH
HOH
360
A
HOH
127
3
HOH
HOH
361
A
HOH
128
3
HOH
HOH
362
A
HOH
129
3
HOH
HOH
363
A
HOH
130
3
HOH
HOH
364
A
HOH
131
3
HOH
HOH
365
A
HOH
132
3
HOH
HOH
366
A
HOH
133
3
HOH
HOH
367
A
HOH
134
3
HOH
HOH
368
A
HOH
135
3
HOH
HOH
369
A
HOH
136
3
HOH
HOH
370
A
HOH
137
3
HOH
HOH
371
A
HOH
138
3
HOH
HOH
372
A
HOH
139
3
HOH
HOH
373
A
HOH
140
3
HOH
HOH
374
A
HOH
141
3
HOH
HOH
375
A
HOH
142
3
HOH
HOH
376
A
HOH
143
3
HOH
HOH
377
A
HOH
144
3
HOH
HOH
378
A
HOH
145
3
HOH
HOH
379
A
HOH
147
3
HOH
HOH
380
A
HOH
148
3
HOH
HOH
381
A
HOH
150
3
HOH
HOH
382
A
HOH
151
3
HOH
HOH
383
A
HOH
152
3
HOH
HOH
384
A
HOH
153
3
HOH
HOH
385
A
HOH
154
3
HOH
HOH
386
A
HOH
155
3
HOH
HOH
387
A
HOH
156
3
HOH
HOH
388
A
HOH
158
3
HOH
HOH
389
A
HOH
160
3
HOH
HOH
390
A
HOH
162
3
HOH
HOH
391
A
HOH
163
3
HOH
HOH
392
A
HOH
164
3
HOH
HOH
393
A
HOH
165
3
HOH
HOH
394
A
HOH
167
3
HOH
HOH
395
A
HOH
168
3
HOH
HOH
396
A
HOH
169
3
HOH
HOH
397
A
HOH
171
3
HOH
HOH
398
A
HOH
172
3
HOH
HOH
399
A
HOH
174
3
HOH
HOH
400
A
HOH
175
3
HOH
HOH
401
A
HOH
176
3
HOH
HOH
402
A
HOH
177
3
HOH
HOH
403
A
HOH
178
3
HOH
HOH
404
A
HOH
179
3
HOH
HOH
405
A
HOH
180
3
HOH
HOH
406
A
HOH
181
3
HOH
HOH
407
A
HOH
183
3
HOH
HOH
408
A
HOH
184
3
HOH
HOH
409
A
HOH
185
3
HOH
HOH
410
A
HOH
186
3
HOH
HOH
411
A
HOH
187
3
HOH
HOH
412
A
HOH
189
3
HOH
HOH
413
A
HOH
190
3
HOH
HOH
414
A
HOH
191
3
HOH
HOH
415
A
HOH
192
3
HOH
HOH
416
A
HOH
193
3
HOH
HOH
417
A
HOH
201
3
HOH
HOH
418
A
n
1
-2
A
n
2
-1
A
n
3
0
A
n
4
1
A
GLU
2
n
5
GLU
2
A
PRO
3
n
6
PRO
3
A
LYS
4
n
7
LYS
4
A
VAL
5
n
8
VAL
5
A
ALA
6
n
9
ALA
6
A
GLU
7
n
10
GLU
7
A
LEU
8
n
11
LEU
8
A
LYS
9
n
12
LYS
9
A
GLN
10
n
13
GLN
10
A
LYS
11
n
14
LYS
11
A
ILE
12
n
15
ILE
12
A
GLU
13
n
16
GLU
13
A
ASP
14
n
17
ASP
14
A
THR
15
n
18
THR
15
A
LEU
16
n
19
LEU
16
A
CYS
17
n
20
CYS
17
A
PRO
18
n
21
PRO
18
A
PHE
19
n
22
PHE
19
A
GLY
20
n
23
GLY
20
A
PHE
21
n
24
PHE
21
A
GLU
22
n
25
GLU
22
A
VAL
23
n
26
VAL
23
A
TYR
24
n
27
TYR
24
A
PRO
25
n
28
PRO
25
A
PHE
26
n
29
PHE
26
A
GLN
27
n
30
GLN
27
A
VAL
28
n
31
VAL
28
A
ALA
29
n
32
ALA
29
A
TRP
30
n
33
TRP
30
A
TYR
31
n
34
TYR
31
A
ASN
32
n
35
ASN
32
A
GLU
33
n
36
GLU
33
A
LEU
34
n
37
LEU
34
A
LEU
35
n
38
LEU
35
A
PRO
36
n
39
PRO
36
A
PRO
37
n
40
PRO
37
A
ALA
38
n
41
ALA
38
A
PHE
39
n
42
PHE
39
A
HIS
40
n
43
HIS
40
A
LEU
41
n
44
LEU
41
A
PRO
42
n
45
PRO
42
A
LEU
43
n
46
LEU
43
A
PRO
44
n
47
PRO
44
A
GLY
45
n
48
GLY
45
A
PRO
46
n
49
PRO
46
A
THR
47
n
50
THR
47
A
LEU
48
n
51
LEU
48
A
ALA
49
n
52
ALA
49
A
PHE
50
n
53
PHE
50
A
LEU
51
n
54
LEU
51
A
VAL
52
n
55
VAL
52
A
LEU
53
n
56
LEU
53
A
SER
54
n
57
SER
54
A
THR
55
n
58
THR
55
A
PRO
56
n
59
PRO
56
A
ALA
57
n
60
ALA
57
A
MET
58
n
61
MET
58
A
PHE
59
n
62
PHE
59
A
ASP
60
n
63
ASP
60
A
ARG
61
n
64
ARG
61
A
ALA
62
n
65
ALA
62
A
LEU
63
n
66
LEU
63
A
LYS
64
n
67
LYS
64
A
PRO
65
n
68
PRO
65
A
PHE
66
n
69
PHE
66
A
LEU
67
n
70
LEU
67
A
GLN
68
n
71
GLN
68
A
SER
69
n
72
SER
69
A
CYS
70
n
73
CYS
70
A
HIS
71
n
74
HIS
71
A
LEU
72
n
75
LEU
72
A
ARG
73
n
76
ARG
73
A
MET
74
n
77
MET
74
A
LEU
75
n
78
LEU
75
A
THR
76
n
79
THR
76
A
ASP
77
n
80
ASP
77
A
PRO
78
n
81
PRO
78
A
VAL
79
n
82
VAL
79
A
ASP
80
n
83
ASP
80
A
GLN
81
n
84
GLN
81
A
CYS
82
n
85
CYS
82
A
VAL
83
n
86
VAL
83
A
ALA
84
n
87
ALA
84
A
TYR
85
n
88
TYR
85
A
HIS
86
n
89
HIS
86
A
LEU
87
n
90
LEU
87
A
GLY
88
n
91
GLY
88
A
ARG
89
n
92
ARG
89
A
VAL
90
n
93
VAL
90
A
ARG
91
n
94
ARG
91
A
GLU
92
n
95
GLU
92
A
SER
93
n
96
SER
93
A
LEU
94
n
97
LEU
94
A
PRO
95
n
98
PRO
95
A
GLU
96
n
99
GLU
96
A
LEU
97
n
100
LEU
97
A
GLN
98
n
101
GLN
98
A
ILE
99
n
102
ILE
99
A
GLU
100
n
103
GLU
100
A
ILE
101
n
104
ILE
101
A
ILE
102
n
105
ILE
102
A
ALA
103
n
106
ALA
103
A
ASP
104
n
107
ASP
104
A
TYR
105
n
108
TYR
105
A
GLU
106
n
109
GLU
106
A
VAL
107
n
110
VAL
107
A
HIS
108
n
111
HIS
108
A
PRO
109
n
112
PRO
109
A
ASN
110
n
113
ASN
110
A
ARG
111
n
114
ARG
111
A
ARG
112
n
115
ARG
112
A
PRO
113
n
116
PRO
113
A
LYS
114
n
117
LYS
114
A
ILE
115
n
118
ILE
115
A
LEU
116
n
119
LEU
116
A
ALA
117
n
120
ALA
117
A
GLN
118
n
121
GLN
118
A
THR
119
n
122
THR
119
A
ALA
120
n
123
ALA
120
A
ALA
121
n
124
ALA
121
A
HIS
122
n
125
HIS
122
A
VAL
123
n
126
VAL
123
A
ALA
124
n
127
ALA
124
A
GLY
125
n
128
GLY
125
A
ALA
126
n
129
ALA
126
A
ALA
127
n
130
ALA
127
A
TYR
128
n
131
TYR
128
A
TYR
129
n
132
TYR
129
A
TYR
130
n
133
TYR
130
A
GLN
131
n
134
GLN
131
A
ARG
132
n
135
ARG
132
A
GLN
133
n
136
GLN
133
A
ASP
134
n
137
ASP
134
A
VAL
135
n
138
VAL
135
A
GLU
136
n
139
GLU
136
A
ALA
137
n
140
ALA
137
A
ASP
138
n
141
ASP
138
A
PRO
139
n
142
PRO
139
A
TRP
140
n
143
TRP
140
A
GLY
141
n
144
GLY
141
A
ASN
142
n
145
ASN
142
A
GLN
143
n
146
GLN
143
A
ARG
144
n
147
ARG
144
A
ILE
145
n
148
ILE
145
A
SER
146
n
149
SER
146
A
GLY
147
n
150
GLY
147
A
VAL
148
n
151
VAL
148
A
CYS
149
n
152
CYS
149
A
ILE
150
n
153
ILE
150
A
HIS
151
n
154
HIS
151
A
PRO
152
n
155
PRO
152
A
ARG
153
n
156
ARG
153
A
PHE
154
n
157
PHE
154
A
GLY
155
n
158
GLY
155
A
GLY
156
n
159
GLY
156
A
TRP
157
n
160
TRP
157
A
PHE
158
n
161
PHE
158
A
ALA
159
n
162
ALA
159
A
ILE
160
n
163
ILE
160
A
ARG
161
n
164
ARG
161
A
GLY
162
n
165
GLY
162
A
VAL
163
n
166
VAL
163
A
VAL
164
n
167
VAL
164
A
LEU
165
n
168
LEU
165
A
LEU
166
n
169
LEU
166
A
PRO
167
n
170
PRO
167
A
GLY
168
n
171
GLY
168
A
ILE
169
n
172
ILE
169
A
GLU
170
n
173
GLU
170
A
VAL
171
n
174
VAL
171
A
PRO
172
n
175
PRO
172
A
ASP
173
n
176
ASP
173
A
LEU
174
n
177
LEU
174
A
PRO
175
n
178
PRO
175
A
PRO
176
n
179
PRO
176
A
ARG
177
n
180
ARG
177
A
LYS
178
n
181
LYS
178
A
PRO
179
n
182
PRO
179
A
HIS
180
n
183
HIS
180
A
ASP
181
n
184
ASP
181
A
CYS
182
n
185
CYS
182
A
VAL
183
n
186
VAL
183
A
PRO
184
n
187
PRO
184
A
THR
185
n
188
THR
185
A
ARG
186
n
189
ARG
186
A
ALA
187
n
190
ALA
187
A
ASP
188
n
191
ASP
188
A
ARG
189
n
192
ARG
189
A
ILE
190
n
193
ILE
190
A
ALA
191
n
194
ALA
191
A
LEU
192
n
195
LEU
192
A
LEU
193
n
196
LEU
193
A
GLU
194
n
197
GLU
194
A
GLY
195
n
198
GLY
195
A
PHE
196
n
199
PHE
196
A
ASN
197
n
200
ASN
197
A
PHE
198
n
201
PHE
198
A
HIS
199
n
202
HIS
199
A
TRP
200
n
203
TRP
200
A
ARG
201
n
204
ARG
201
A
ASP
202
n
205
ASP
202
A
TRP
203
n
206
TRP
203
A
THR
204
n
207
THR
204
A
TYR
205
n
208
TYR
205
A
ARG
206
n
209
ARG
206
A
ASP
207
n
210
ASP
207
A
ALA
208
n
211
ALA
208
A
VAL
209
n
212
VAL
209
A
THR
210
n
213
THR
210
A
PRO
211
n
214
PRO
211
A
GLN
212
n
215
GLN
212
A
GLU
213
n
216
GLU
213
A
ARG
214
n
217
ARG
214
A
TYR
215
n
218
TYR
215
A
SER
216
n
219
SER
216
A
GLU
217
n
220
GLU
217
A
GLU
218
n
221
GLU
218
A
GLN
219
n
222
GLN
219
A
LYS
220
n
223
LYS
220
A
ALA
221
n
224
ALA
221
A
TYR
222
n
225
TYR
222
A
PHE
223
n
226
PHE
223
A
SER
224
n
227
SER
224
A
THR
225
n
228
THR
225
A
PRO
226
n
229
PRO
226
A
PRO
227
n
230
PRO
227
A
ALA
228
n
231
ALA
228
A
GLN
229
n
232
GLN
229
A
ARG
230
n
233
ARG
230
A
LEU
231
n
234
LEU
231
A
ALA
232
n
235
ALA
232
A
LEU
233
n
236
LEU
233
A
LEU
234
n
237
LEU
234
A
GLY
235
n
238
GLY
235
A
LEU
236
n
239
LEU
236
A
ALA
237
n
240
ALA
237
A
GLN
238
n
241
GLN
238
A
author_defined_assembly
1
monomeric
software_defined_assembly
PISA
2
dimeric
2090
-15
23490
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_555
x-y,-y,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
24
A
N
TYR
27
A
O
LEU
51
A
O
LEU
54
A
N
VAL
52
A
N
VAL
55
A
O
GLY
162
A
O
GLY
165
A
O
LEU
165
A
O
LEU
168
A
N
GLU
100
A
N
GLU
103
A
N
TYR
130
A
N
TYR
133
A
O
VAL
148
A
O
VAL
151
1
A
SER
-2
A
SER
1
1
Y
1
A
ASN
-1
A
ASN
2
1
Y
1
A
ALA
0
A
ALA
3
1
Y
1
A
MET
1
A
MET
4
1
Y
1
A
C2P
COB
300
WRONG HAND
1
A
A
H
H332
CYS
COB
149
300
1.16
1
A
A
O
O
HOH
HOH
325
387
2.14
1
A
A
ALA
GLN
228
229
-148.08
1
8.69
0.90
119.80
128.49
A
A
A
CD1
CE1
CZ
TYR
TYR
TYR
31
31
31
N
1
A
ALA
62
-122.18
-52.09
1
A
HIS
199
-142.99
27.96
1
A
TRP
203
78.15
-11.64
1
A
PHE
223
-67.37
70.72
1
A
THR
225
152.89
109.48
1
A
ARG
230
-144.40
-56.06
1
A
LEU
234
67.38
-14.34
90.720
34.0483
13.060
-1.9664
-0.0000
0.0000
-1.9664
0.0000
3.9329
0.2441
0.1862
0.207
0.1889
1.9500
40.2930
1018
22535
20022
5.0800
95.9100
1.000
0.500
0.2500
Random
1
0.140
MOLECULAR REPLACEMENT
20.7900
0.9000
1.1100
3SBY
ML
FLAT BULK SOLVENT MODEL
43.8930
0.4120
1.9500
40.2930
179
2186
92
0
1915
0.012
1.552
27.904
0.123
0.010
0.2535
0.1962
2.0528
137
89.00
0.2386
0.1737
2.1814
154
93.00
0.2352
0.1791
2.3499
158
95.00
0.2456
0.1729
2.5863
152
97.00
0.2743
0.1880
2.9604
161
98.00
0.2355
0.1705
3.7294
113
99.00
0.2239
0.1955
40.3016
143
99.00
1.900
50.000
3SC0
22523
22478
0.00
0.00
0.082
0.863
1
11.200
6.900
99.800
0.672
1.900
1.970
2162
1.119
1
3.700
98.500
0.482
1.970
2.050
2199
1.101
1
4.800
100.000
0.331
2.050
2.140
2205
1.095
1
6.900
100.000
0.247
2.140
2.250
2212
1.051
1
7.600
100.000
0.190
2.250
2.390
2215
0.972
1
7.700
100.000
0.141
2.390
2.580
2238
0.891
1
7.700
100.000
0.114
2.580
2.840
2249
0.883
1
7.700
100.000
0.083
2.840
3.250
2262
0.764
1
7.600
100.000
0.064
3.250
4.090
2300
0.611
1
7.500
100.000
0.049
4.090
50.000
2436
0.436
1
7.100
99.100
refinement
PHENIX
1.6_289
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
data collection
Blu-Ice
Epics
data reduction
HKL-2000
data scaling
HKL-2000
phasing
PHASER
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
Crystal Structure of MMACHC (1-238), a human B12 processing enzyme, complexed with MethylCobalamin
1
N
N
2
N
N
3
N
N
A
GLU
2
A
GLU
5
HELX_P
A
CYS
17
A
CYS
20
1
1
16
A
VAL
28
A
VAL
31
HELX_P
A
GLU
33
A
GLU
36
1
2
6
A
LEU
34
A
LEU
37
HELX_P
A
LEU
35
A
LEU
38
5
3
2
A
PRO
36
A
PRO
39
HELX_P
A
HIS
40
A
HIS
43
5
4
5
A
ALA
57
A
ALA
60
HELX_P
A
ALA
62
A
ALA
65
1
5
6
A
ALA
62
A
ALA
65
HELX_P
A
LEU
67
A
LEU
70
1
6
6
A
ASP
77
A
ASP
80
HELX_P
A
LEU
94
A
LEU
97
1
7
18
A
LEU
116
A
LEU
119
HELX_P
A
ALA
124
A
ALA
127
1
8
9
A
GLN
131
A
GLN
134
HELX_P
A
VAL
135
A
VAL
138
5
9
5
A
THR
185
A
THR
188
HELX_P
A
HIS
199
A
HIS
202
1
10
15
A
TRP
200
A
TRP
203
HELX_P
A
ALA
208
A
ALA
211
5
11
9
A
SER
216
A
SER
219
HELX_P
A
PHE
223
A
PHE
226
1
12
8
A
THR
225
A
THR
228
HELX_P
A
ARG
230
A
ARG
233
1
13
6
OXIDOREDUCTASE
MMACHC, CblC, Cobalamin, Flavin, Glutathione, Flavin Reductase, Oxidoreductase, Maturase
MMAC_HUMAN
UNP
1
1
Q9Y4U1
MEPKVAELKQKIEDTLCPFGFEVYPFQVAWYNELLPPAFHLPLPGPTLAFLVLSTPAMFDRALKPFLQSCHLRMLTDPVD
QCVAYHLGRVRESLPELQIEIIADYEVHPNRRPKILAQTAAHVAGAAYYYQRQDVEADPWGNQRISGVCIHPRFGGWFAI
RGVVLLPGIEVPDLPPRKPHDCVPTRADRIALLEGFNFHWRDWTYRDAVTPQERYSEEQKAYFSTPPAQRLALLGLAQ
1
238
3SC0
1
238
Q9Y4U1
A
1
4
241
1
expression tag
SER
-2
3SC0
A
Q9Y4U1
UNP
1
1
expression tag
ASN
-1
3SC0
A
Q9Y4U1
UNP
2
1
expression tag
ALA
0
3SC0
A
Q9Y4U1
UNP
3
4
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
PHE
21
A
PHE
24
A
GLN
27
A
GLN
30
A
THR
47
A
THR
50
A
SER
54
A
SER
57
A
ALA
159
A
ALA
162
A
GLU
170
A
GLU
173
A
GLU
100
A
GLU
103
A
ALA
103
A
ALA
106
A
TYR
128
A
TYR
131
A
TYR
130
A
TYR
133
A
VAL
148
A
VAL
151
A
ILE
150
A
ILE
153
BINDING SITE FOR RESIDUE COB A 300
A
COB
300
Software
28
A
LEU
34
A
LEU
37
28
1_555
A
LEU
35
A
LEU
38
28
1_555
A
PRO
36
A
PRO
39
28
1_555
A
ASP
104
A
ASP
107
28
1_555
A
PRO
113
A
PRO
116
28
1_555
A
ILE
115
A
ILE
118
28
1_555
A
ALA
117
A
ALA
120
28
1_555
A
GLN
118
A
GLN
121
28
1_555
A
THR
119
A
THR
122
28
1_555
A
HIS
122
A
HIS
125
28
1_555
A
TYR
129
A
TYR
132
28
1_555
A
GLN
131
A
GLN
134
28
1_555
A
GLN
133
A
GLN
136
28
1_555
A
SER
146
A
SER
149
28
1_555
A
VAL
148
A
VAL
151
28
1_555
A
CYS
149
A
CYS
152
28
1_555
A
ALA
159
A
ALA
162
28
1_555
A
ILE
160
A
ILE
163
28
1_555
A
PHE
196
A
PHE
199
28
1_555
A
TRP
200
A
TRP
203
28
1_555
A
HOH
242
C
HOH
28
1_555
A
HOH
246
C
HOH
28
1_555
A
HOH
247
C
HOH
28
1_555
A
HOH
248
C
HOH
28
1_555
A
HOH
294
C
HOH
28
1_555
A
HOH
349
C
HOH
28
1_555
A
HOH
355
C
HOH
28
1_555
A
HOH
390
C
HOH
28
1_555
180
P 62 2 2