0.019658 0.011350 0.000000 0.000000 0.022699 0.000000 0.000000 0.000000 0.019062 0.00000 0.00000 0.00000 Collie, G.W. Promontorio, R. Parkinson, G.N. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 50.870 50.870 52.460 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer K 1 39.098 POTASSIUM ION non-polymer C46 H72 N12 O4 857.142 2,7-bis[3-(4-methylpiperazin-1-yl)propyl]-4,9-bis{[3-(4-methylpiperazin-1-yl)propyl]amino}benzo[lmn][3,8]phenanthroline-1,3,6,8(2H,7H)-tetrone non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C Y 49 N N Y 50 N C Y 51 N N Y 52 N C N 53 N C N 54 N O N 55 N N N 56 N C N 57 N N N 58 N N Y 59 N C N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N O N 75 N P N 76 N O N 77 N O N 78 N O N 79 N C N 80 R C N 81 N O N 82 S C N 83 N O N 84 N C N 85 R C N 86 N N N 87 N C N 88 N O N 89 N N N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N O N 111 N H N 112 N H N 113 N K N 114 N C N 115 N C N 116 N C N 117 N C N 118 N O N 119 N O N 120 N O N 121 N O Y 122 N C Y 123 N C N 124 N C N 125 N C N 126 N C N 127 N C N 128 N C N 129 N C N 130 N C N 131 N C N 132 N C N 133 N C N 134 N C N 135 N C N 136 N C N 137 N C N 138 N C N 139 N C N 140 N C N 141 N C N 142 N C N 143 N C N 144 N C N 145 N C N 146 N C N 147 N C N 148 N C N 149 N C N 150 N C N 151 N C N 152 N N N 153 N N Y 154 N C Y 155 N C N 156 N C N 157 N C N 158 N C N 159 N C Y 160 N C Y 161 N C Y 162 N C Y 163 N C Y 164 N C Y 165 N C N 166 N N N 167 N N N 168 N N N 169 N N N 170 N N N 171 N N N 172 N N N 173 N N N 174 N N N 175 N N N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing Y 62 N sing Y 63 N sing Y 64 N doub N 65 N sing Y 66 N sing N 67 N sing Y 68 N doub N 69 N doub N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N doub N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N doub N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N doub N 108 N sing N 109 N sing N 110 N doub N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N doub Y 135 N doub Y 136 N sing Y 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N doub N 142 N sing N 143 N sing Y 144 N doub N 145 N sing N 146 N sing N 147 N sing Y 148 N doub N 149 N sing N 150 N sing N 151 N sing Y 152 N sing Y 153 N sing Y 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N doub Y 161 N doub N 162 N sing Y 163 N doub N 164 N doub Y 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing US J.Am.Chem.Soc. JACSAT 0004 0002-7863 134 2723 2731 10.1021/ja2102423 22280460 Structural basis for telomeric g-quadruplex targeting by naphthalene diimide ligands. 2012 10.2210/pdb3sc8/pdb pdb_00003sc8 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 PIXEL 2011-04-16 PSI PILATUS 6M Si 111 CHANNEL SINGLE WAVELENGTH M x-ray 1 0.91730 1.0 I04-1 Diamond 0.91730 SYNCHROTRON DIAMOND BEAMLINE I04-1 6983.497 Human telomeric repeat sequence 1 syn polymer 39.098 POTASSIUM ION 3 syn non-polymer 857.142 2,7-bis[3-(4-methylpiperazin-1-yl)propyl]-4,9-bis{[3-(4-methylpiperazin-1-yl)propyl]amino}benzo[lmn][3,8]phenanthroline-1,3,6,8(2H,7H)-tetrone 1 syn non-polymer 18.015 water 29 nat water no no (DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG) (DG)(DG) AGGGTTAGGGTTAGGGTTAGGG A polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n 1 2.81 56.16 VAPOR DIFFUSION, HANGING DROP 6.5 20 % PEG400, 50 mM potassium chloride, 20 mM potassium cacodylate, 50 mM sodium cacodylate, 100 mM lithium sulfate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 285K 285 3.185 3 6 A 14 A 20 -93.084 A_DG14:DG20_A 1 -2.284 1.748 -0.404 3.631 2.054 3 6 A 15 A 21 -87.694 A_DG15:DG21_A 2 -8.739 1.768 0.230 3.312 15.759 3 6 A 16 A 22 -91.839 A_DG16:DG22_A 3 -9.105 1.441 -0.872 3.502 -10.498 3 6 A 10 A 4 88.751 A_DG10:DG4_A 4 7.703 -1.478 -0.045 -3.384 -1.154 3 6 A 9 A 3 88.560 A_DG9:DG3_A 5 5.256 -1.622 0.074 -3.552 1.202 3 6 A 8 A 2 88.578 A_DG8:DG2_A 6 3.543 -1.227 0.029 -3.613 3.226 34.422 A A 14 15 5.845 A A 20 21 3.330 3.444 -0.122 -0.775 AA_DG14DG15:DG21DG20_AA 1 -4.654 7.899 33.946 -1.850 -0.525 2.616 25.914 A A 15 16 10.684 A A 21 22 3.178 4.688 -0.821 -0.604 AA_DG15DG16:DG22DG21_AA 2 8.010 -18.255 24.221 -2.537 3.864 0.101 -179.291 A A 16 10 6.476 A A 22 4 0.100 -12.951 1.808 3.593 AA_DG16DG10:DG4DG22_AA 3 11.018 5.509 -179.283 -1.796 0.904 -3.013 -29.209 A A 10 9 13.404 A A 4 3 -3.224 -6.702 0.494 0.551 AA_DG10DG9:DG3DG4_AA 4 -0.282 -0.563 -28.444 -2.499 1.040 -3.190 -30.124 A A 9 8 3.306 A A 3 2 -3.275 -1.717 0.389 1.021 AA_DG9DG8:DG2DG3_AA 5 -1.513 -2.914 -30.039 -2.310 1.055 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_site repository Initial release Database references Data collection Database references Derived calculations Refinement description 1 0 2012-02-15 1 1 2012-02-22 1 2 2023-09-13 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2011-06-07 REL REL K POTASSIUM ION R8G 2,7-bis[3-(4-methylpiperazin-1-yl)propyl]-4,9-bis{[3-(4-methylpiperazin-1-yl)propyl]amino}benzo[lmn][3,8]phenanthroline-1,3,6,8(2H,7H)-tetrone HOH water DNA sequence synthesized by standard by phosphoramidite chemistry sample 1KF1 PDB ENTRY 1KF1 PDB experimental model K 24 2 K K 24 A K 25 2 K K 25 A K 26 2 K K 26 A R8G 1 3 R8G R8G 23 A HOH 27 4 HOH HOH 27 A HOH 28 4 HOH HOH 28 A HOH 29 4 HOH HOH 29 A HOH 1 4 HOH HOH 30 A HOH 2 4 HOH HOH 31 A HOH 3 4 HOH HOH 32 A HOH 4 4 HOH HOH 33 A HOH 5 4 HOH HOH 34 A HOH 6 4 HOH HOH 35 A HOH 7 4 HOH HOH 36 A HOH 8 4 HOH HOH 37 A HOH 9 4 HOH HOH 38 A HOH 10 4 HOH HOH 39 A HOH 11 4 HOH HOH 40 A HOH 12 4 HOH HOH 41 A HOH 13 4 HOH HOH 42 A HOH 14 4 HOH HOH 43 A HOH 15 4 HOH HOH 44 A HOH 16 4 HOH HOH 45 A HOH 17 4 HOH HOH 46 A HOH 18 4 HOH HOH 47 A HOH 19 4 HOH HOH 48 A HOH 20 4 HOH HOH 49 A HOH 21 4 HOH HOH 50 A HOH 22 4 HOH HOH 51 A HOH 23 4 HOH HOH 52 A HOH 24 4 HOH HOH 53 A HOH 25 4 HOH HOH 54 A HOH 26 4 HOH HOH 55 A n 1 1 A G 2 n 2 DG 2 A G 3 n 3 DG 3 A G 4 n 4 DG 4 A T 5 n 5 DT 5 A T 6 n 6 DT 6 A A 7 n 7 DA 7 A G 8 n 8 DG 8 A G 9 n 9 DG 9 A G 10 n 10 DG 10 A T 11 n 11 DT 11 A T 12 n 12 DT 12 A A 13 n 13 DA 13 A G 14 n 14 DG 14 A G 15 n 15 DG 15 A G 16 n 16 DG 16 A T 17 n 17 DT 17 A T 18 n 18 DT 18 A A 19 n 19 DA 19 A G 20 n 20 DG 20 A G 21 n 21 DG 21 A G 22 n 22 DG 22 A 8.9591 0.5922 1.6308 6.3217 1.3446 5.7714 -0.2620 0.2123 0.9019 -0.8007 -0.0997 0.4667 -0.4757 -0.4314 0.3617 0.1706 0.1202 -0.0841 0.3520 -0.1192 0.2173 refined -19.0280 -14.7400 -0.9020 X-RAY DIFFRACTION 14.0617 1.2752 9.7221 2.2653 1.8100 8.3360 -0.0325 -0.3200 -0.6067 -0.1961 0.0252 0.0023 0.0784 -0.3380 0.0073 0.0700 0.0229 0.0455 0.1199 -0.0543 0.1663 refined -19.3900 -21.8120 -0.6520 X-RAY DIFFRACTION 0.0432 -0.4507 0.5448 4.9221 -6.0814 10.9385 -0.1025 0.0122 0.0245 0.9255 -0.3739 -0.2077 0.0551 0.5806 0.4765 0.6613 0.1035 0.0649 0.2994 0.0161 0.1999 refined -10.0900 -23.3570 11.8630 X-RAY DIFFRACTION 7.6711 -0.6815 3.9997 10.2499 10.4854 13.7216 -0.5242 0.6259 0.1871 0.1725 0.7920 -0.3823 -0.3538 1.3182 -0.2678 0.4831 -0.2113 -0.0257 0.3550 -0.0304 0.2120 refined -5.6780 -7.8810 10.3380 X-RAY DIFFRACTION 20.3792 5.2859 10.5318 3.8441 4.1860 8.9480 0.0168 -0.2229 0.8582 0.5714 -0.1345 -0.2014 -0.5280 0.3972 0.1177 0.4706 -0.1351 -0.0276 0.2512 -0.0124 0.2004 refined -7.7740 -7.9220 3.4800 X-RAY DIFFRACTION A 2 A 5 X-RAY DIFFRACTION 1 A 6 A 9 X-RAY DIFFRACTION 2 A 10 A 14 X-RAY DIFFRACTION 3 A 15 A 18 X-RAY DIFFRACTION 4 A 19 A 22 X-RAY DIFFRACTION 5 author_and_software_defined_assembly PISA 1 monomeric A DG 2 A O6 DG 2 1_555 A K 25 C K K 1_555 A DG 3 A O6 DG 3 1_555 73.3 A DG 2 A O6 DG 2 1_555 A K 25 C K K 1_555 A DG 8 A O6 DG 8 1_555 62.7 A DG 3 A O6 DG 3 1_555 A K 25 C K K 1_555 A DG 8 A O6 DG 8 1_555 89.3 A DG 2 A O6 DG 2 1_555 A K 25 C K K 1_555 A DG 9 A O6 DG 9 1_555 126.8 A DG 3 A O6 DG 3 1_555 A K 25 C K K 1_555 A DG 9 A O6 DG 9 1_555 74.6 A DG 8 A O6 DG 8 1_555 A K 25 C K K 1_555 A DG 9 A O6 DG 9 1_555 75.7 A DG 2 A O6 DG 2 1_555 A K 25 C K K 1_555 A DG 14 A O6 DG 14 1_555 102.1 A DG 3 A O6 DG 3 1_555 A K 25 C K K 1_555 A DG 14 A O6 DG 14 1_555 155.4 A DG 8 A O6 DG 8 1_555 A K 25 C K K 1_555 A DG 14 A O6 DG 14 1_555 67.8 A DG 9 A O6 DG 9 1_555 A K 25 C K K 1_555 A DG 14 A O6 DG 14 1_555 90.4 A DG 2 A O6 DG 2 1_555 A K 25 C K K 1_555 A DG 15 A O6 DG 15 1_555 163.2 A DG 3 A O6 DG 3 1_555 A K 25 C K K 1_555 A DG 15 A O6 DG 15 1_555 114.5 A DG 8 A O6 DG 8 1_555 A K 25 C K K 1_555 A DG 15 A O6 DG 15 1_555 129.8 A DG 9 A O6 DG 9 1_555 A K 25 C K K 1_555 A DG 15 A O6 DG 15 1_555 69.9 A DG 14 A O6 DG 14 1_555 A K 25 C K K 1_555 A DG 15 A O6 DG 15 1_555 76.9 A DG 2 A O6 DG 2 1_555 A K 25 C K K 1_555 A DG 20 A O6 DG 20 1_555 73.3 A DG 3 A O6 DG 3 1_555 A K 25 C K K 1_555 A DG 20 A O6 DG 20 1_555 128.7 A DG 8 A O6 DG 8 1_555 A K 25 C K K 1_555 A DG 20 A O6 DG 20 1_555 108.2 A DG 9 A O6 DG 9 1_555 A K 25 C K K 1_555 A DG 20 A O6 DG 20 1_555 155.6 A DG 14 A O6 DG 14 1_555 A K 25 C K K 1_555 A DG 20 A O6 DG 20 1_555 70.0 A DG 15 A O6 DG 15 1_555 A K 25 C K K 1_555 A DG 20 A O6 DG 20 1_555 90.9 A DG 2 A O6 DG 2 1_555 A K 25 C K K 1_555 A DG 21 A O6 DG 21 1_555 94.0 A DG 3 A O6 DG 3 1_555 A K 25 C K K 1_555 A DG 21 A O6 DG 21 1_555 78.4 A DG 8 A O6 DG 8 1_555 A K 25 C K K 1_555 A DG 21 A O6 DG 21 1_555 156.2 A DG 9 A O6 DG 9 1_555 A K 25 C K K 1_555 A DG 21 A O6 DG 21 1_555 119.4 A DG 14 A O6 DG 14 1_555 A K 25 C K K 1_555 A DG 21 A O6 DG 21 1_555 126.2 A DG 15 A O6 DG 15 1_555 A K 25 C K K 1_555 A DG 21 A O6 DG 21 1_555 74.0 A DG 20 A O6 DG 20 1_555 A K 25 C K K 1_555 A DG 21 A O6 DG 21 1_555 66.3 A DG 2 A O6 DG 2 1_555 A K 26 D K K 1_555 A DG 8 A O6 DG 8 1_555 65.2 A DG 2 A O6 DG 2 1_555 A K 26 D K K 1_555 A DG 14 A O6 DG 14 1_555 109.5 A DG 8 A O6 DG 8 1_555 A K 26 D K K 1_555 A DG 14 A O6 DG 14 1_555 72.2 A DG 2 A O6 DG 2 1_555 A K 26 D K K 1_555 A DG 20 A O6 DG 20 1_555 73.9 A DG 8 A O6 DG 8 1_555 A K 26 D K K 1_555 A DG 20 A O6 DG 20 1_555 110.6 A DG 14 A O6 DG 14 1_555 A K 26 D K K 1_555 A DG 20 A O6 DG 20 1_555 72.0 A DG 3 A O6 DG 3 1_555 A K 24 B K K 1_555 A DG 4 A O6 DG 4 1_555 75.0 A DG 3 A O6 DG 3 1_555 A K 24 B K K 1_555 A DG 9 A O6 DG 9 1_555 68.7 A DG 4 A O6 DG 4 1_555 A K 24 B K K 1_555 A DG 9 A O6 DG 9 1_555 89.6 A DG 3 A O6 DG 3 1_555 A K 24 B K K 1_555 A DG 10 A O6 DG 10 1_555 123.7 A DG 4 A O6 DG 4 1_555 A K 24 B K K 1_555 A DG 10 A O6 DG 10 1_555 72.6 A DG 9 A O6 DG 9 1_555 A K 24 B K K 1_555 A DG 10 A O6 DG 10 1_555 66.3 A DG 3 A O6 DG 3 1_555 A K 24 B K K 1_555 A DG 15 A O6 DG 15 1_555 104.8 A DG 4 A O6 DG 4 1_555 A K 24 B K K 1_555 A DG 15 A O6 DG 15 1_555 150.8 A DG 9 A O6 DG 9 1_555 A K 24 B K K 1_555 A DG 15 A O6 DG 15 1_555 64.3 A DG 10 A O6 DG 10 1_555 A K 24 B K K 1_555 A DG 15 A O6 DG 15 1_555 84.4 A DG 3 A O6 DG 3 1_555 A K 24 B K K 1_555 A DG 16 A O6 DG 16 1_555 147.8 A DG 4 A O6 DG 4 1_555 A K 24 B K K 1_555 A DG 16 A O6 DG 16 1_555 131.2 A DG 9 A O6 DG 9 1_555 A K 24 B K K 1_555 A DG 16 A O6 DG 16 1_555 121.5 A DG 10 A O6 DG 10 1_555 A K 24 B K K 1_555 A DG 16 A O6 DG 16 1_555 86.1 A DG 15 A O6 DG 15 1_555 A K 24 B K K 1_555 A DG 16 A O6 DG 16 1_555 62.5 A DG 3 A O6 DG 3 1_555 A K 24 B K K 1_555 A DG 21 A O6 DG 21 1_555 68.3 A DG 4 A O6 DG 4 1_555 A K 24 B K K 1_555 A DG 21 A O6 DG 21 1_555 136.2 A DG 9 A O6 DG 9 1_555 A K 24 B K K 1_555 A DG 21 A O6 DG 21 1_555 98.3 A DG 10 A O6 DG 10 1_555 A K 24 B K K 1_555 A DG 21 A O6 DG 21 1_555 149.2 A DG 15 A O6 DG 15 1_555 A K 24 B K K 1_555 A DG 21 A O6 DG 21 1_555 64.8 A DG 16 A O6 DG 16 1_555 A K 24 B K K 1_555 A DG 21 A O6 DG 21 1_555 79.8 A DG 3 A O6 DG 3 1_555 A K 24 B K K 1_555 A DG 22 A O6 DG 22 1_555 96.4 A DG 4 A O6 DG 4 1_555 A K 24 B K K 1_555 A DG 22 A O6 DG 22 1_555 80.8 A DG 9 A O6 DG 9 1_555 A K 24 B K K 1_555 A DG 22 A O6 DG 22 1_555 164.1 A DG 10 A O6 DG 10 1_555 A K 24 B K K 1_555 A DG 22 A O6 DG 22 1_555 121.8 A DG 15 A O6 DG 15 1_555 A K 24 B K K 1_555 A DG 22 A O6 DG 22 1_555 127.5 A DG 16 A O6 DG 16 1_555 A K 24 B K K 1_555 A DG 22 A O6 DG 22 1_555 74.0 A DG 21 A O6 DG 21 1_555 A K 24 B K K 1_555 A DG 22 A O6 DG 22 1_555 80.4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A K 26 D K 1 A DA 1 A DA 1 1 Y 1 3.05 0.30 108.30 111.35 A A A O4' C1' N1 DT DT DT 11 11 11 N 1 -7.90 1.00 110.10 102.20 A A A C1' O4' C4' DA DA DA 13 13 13 N 1 4.47 0.30 108.30 112.77 A A A O4' C1' N9 DA DA DA 13 13 13 N 45.257 0.01 0.00 0.00 0.01 0.00 -0.01 0.931 0.916 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.28828 0.25839 0.25989 0.25989 2.302 10.30 161 3467 3467 4.4 100.00 16.573 0.223 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.389 0.266 0.80 0.80 1.40 PDB ENTRY 1KF1 MAXIMUM LIKELIHOOD MASK 2.302 10.30 29 541 65 447 0 0.007 0.021 572 1.048 3.000 877 0.060 0.200 84 0.011 0.020 261 1.831 3.000 572 2.884 4.500 877 0.481 0.404 2.359 11 240 20 100.00 58.898 2.17 26.23 3SC8 4385 4385 2.0 2.0 0.033 1 32.1 9.5 99.5 0.59 2.17 2.23 3.5 324 1 9.7 100 data collection GDA phasing PHASER refinement REFMAC 5.5.0072 data reduction XDS data scaling SCALA Crystal structure of an intramolecular human telomeric DNA G-quadruplex bound by the naphthalene diimide BMSG-SH-3 1 N N 2 N N 2 N N 2 N N 3 N N 4 N N metalc 2.876 A DG 2 A O6 DG 2 1_555 A K 25 C K K 1_555 metalc 2.792 A DG 2 A O6 DG 2 1_555 A K 26 D K K 1_555 metalc 2.858 A DG 3 A O6 DG 3 1_555 A K 24 B K K 1_555 metalc 2.709 A DG 3 A O6 DG 3 1_555 A K 25 C K K 1_555 metalc 2.592 A DG 4 A O6 DG 4 1_555 A K 24 B K K 1_555 metalc 2.903 A DG 8 A O6 DG 8 1_555 A K 25 C K K 1_555 metalc 2.784 A DG 8 A O6 DG 8 1_555 A K 26 D K K 1_555 metalc 3.049 A DG 9 A O6 DG 9 1_555 A K 24 B K K 1_555 metalc 2.797 A DG 9 A O6 DG 9 1_555 A K 25 C K K 1_555 metalc 2.638 A DG 10 A O6 DG 10 1_555 A K 24 B K K 1_555 metalc 2.968 A DG 14 A O6 DG 14 1_555 A K 25 C K K 1_555 metalc 2.775 A DG 14 A O6 DG 14 1_555 A K 26 D K K 1_555 metalc 3.157 A DG 15 A O6 DG 15 1_555 A K 24 B K K 1_555 metalc 2.961 A DG 15 A O6 DG 15 1_555 A K 25 C K K 1_555 metalc 2.583 A DG 16 A O6 DG 16 1_555 A K 24 B K K 1_555 metalc 3.109 A DG 20 A O6 DG 20 1_555 A K 25 C K K 1_555 metalc 3.137 A DG 20 A O6 DG 20 1_555 A K 26 D K K 1_555 metalc 3.109 A DG 21 A O6 DG 21 1_555 A K 24 B K K 1_555 metalc 2.597 A DG 21 A O6 DG 21 1_555 A K 25 C K K 1_555 metalc 2.666 A DG 22 A O6 DG 22 1_555 A K 24 B K K 1_555 hydrog TYPE_6_PAIR A DG 2 A N1 DG 2 1_555 A DG 8 A O6 DG 8 1_555 hydrog TYPE_6_PAIR A DG 2 A N2 DG 2 1_555 A DG 8 A N7 DG 8 1_555 hydrog TYPE_6_PAIR A DG 2 A N7 DG 2 1_555 A DG 20 A N2 DG 20 1_555 hydrog TYPE_6_PAIR A DG 2 A O6 DG 2 1_555 A DG 20 A N1 DG 20 1_555 hydrog TYPE_6_PAIR A DG 3 A N1 DG 3 1_555 A DG 9 A O6 DG 9 1_555 hydrog TYPE_6_PAIR A DG 3 A N2 DG 3 1_555 A DG 9 A N7 DG 9 1_555 hydrog TYPE_6_PAIR A DG 3 A N7 DG 3 1_555 A DG 21 A N2 DG 21 1_555 hydrog TYPE_6_PAIR A DG 3 A O6 DG 3 1_555 A DG 21 A N1 DG 21 1_555 hydrog TYPE_6_PAIR A DG 4 A N1 DG 4 1_555 A DG 10 A O6 DG 10 1_555 hydrog TYPE_6_PAIR A DG 4 A N2 DG 4 1_555 A DG 10 A N7 DG 10 1_555 hydrog TYPE_6_PAIR A DG 4 A N7 DG 4 1_555 A DG 22 A N2 DG 22 1_555 hydrog TYPE_6_PAIR A DG 4 A O6 DG 4 1_555 A DG 22 A N1 DG 22 1_555 hydrog TYPE_6_PAIR A DG 8 A N1 DG 8 1_555 A DG 14 A O6 DG 14 1_555 hydrog TYPE_6_PAIR A DG 8 A N2 DG 8 1_555 A DG 14 A N7 DG 14 1_555 hydrog TYPE_6_PAIR A DG 9 A N1 DG 9 1_555 A DG 15 A O6 DG 15 1_555 hydrog TYPE_6_PAIR A DG 9 A N2 DG 9 1_555 A DG 15 A N7 DG 15 1_555 hydrog TYPE_6_PAIR A DG 10 A N1 DG 10 1_555 A DG 16 A O6 DG 16 1_555 hydrog TYPE_6_PAIR A DG 10 A N2 DG 10 1_555 A DG 16 A N7 DG 16 1_555 hydrog TYPE_6_PAIR A DG 14 A N1 DG 14 1_555 A DG 20 A O6 DG 20 1_555 hydrog TYPE_6_PAIR A DG 14 A N2 DG 14 1_555 A DG 20 A N7 DG 20 1_555 hydrog TYPE_6_PAIR A DG 15 A N1 DG 15 1_555 A DG 21 A O6 DG 21 1_555 hydrog TYPE_6_PAIR A DG 15 A N2 DG 15 1_555 A DG 21 A N7 DG 21 1_555 hydrog TYPE_6_PAIR A DG 16 A N1 DG 16 1_555 A DG 22 A O6 DG 22 1_555 hydrog TYPE_6_PAIR A DG 16 A N2 DG 16 1_555 A DG 22 A N7 DG 22 1_555 DNA G-quadruplex, intramolecular, ligand-complex, telomeric, DNA 3SC8 PDB 1 1 3SC8 AGGGTTAGGGTTAGGGTTAGGG 1 22 3SC8 1 22 3SC8 A 1 1 22 BINDING SITE FOR RESIDUE K A 24 A K 24 Software 9 BINDING SITE FOR RESIDUE K A 25 A K 25 Software 11 BINDING SITE FOR RESIDUE K A 26 A K 26 Software 10 BINDING SITE FOR RESIDUE R8G A 23 A R8G 23 Software 9 A DG 3 A DG 3 9 1_555 A DG 4 A DG 4 9 1_555 A DG 9 A DG 9 9 1_555 A DG 10 A DG 10 9 1_555 A DG 15 A DG 15 9 1_555 A DG 16 A DG 16 9 1_555 A DG 21 A DG 21 9 1_555 A DG 22 A DG 22 9 1_555 A K 25 C K 9 1_555 A DG 2 A DG 2 11 1_555 A DG 3 A DG 3 11 1_555 A DG 8 A DG 8 11 1_555 A DG 9 A DG 9 11 1_555 A DG 14 A DG 14 11 1_555 A DG 15 A DG 15 11 1_555 A DG 20 A DG 20 11 1_555 A DG 21 A DG 21 11 1_555 A K 24 B K 11 1_555 A K 26 D K 11 4_555 A K 26 D K 11 1_555 A DG 2 A DG 2 10 1_555 A DG 2 A DG 2 10 4_555 A DG 8 A DG 8 10 1_555 A DG 8 A DG 8 10 4_555 A DG 14 A DG 14 10 1_555 A DG 14 A DG 14 10 4_555 A DG 20 A DG 20 10 4_555 A DG 20 A DG 20 10 1_555 A K 25 C K 10 4_555 A K 25 C K 10 1_555 A DG 4 A DG 4 9 1_555 A DT 5 A DT 5 9 1_555 A DT 6 A DT 6 9 2_455 A DG 10 A DG 10 9 1_555 A DT 11 A DT 11 9 1_555 A DT 12 A DT 12 9 6_455 A DA 13 A DA 13 9 6_455 A DG 16 A DG 16 9 1_555 A DG 22 A DG 22 9 1_555 152 P 31 2 1