0.017297
0.000000
0.005953
0.000000
0.018633
0.000000
0.000000
0.000000
0.017241
0.00000
0.00000
0.00000
Stams, T.
Vash, B.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
108.99
90.00
57.812
53.668
61.338
C20 H20 Cl F2 N3 O2
407.842
(2R)-2-amino-3-(3-chlorophenyl)-1-[4-(2,5-difluorobenzoyl)piperazin-1-yl]propan-1-one
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
K 1
39.098
POTASSIUM ION
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
C
N
2
N
F
N
3
N
N
N
4
N
O
N
5
N
CL
N
6
N
C
N
7
N
F
N
8
N
N
N
9
N
O
N
10
N
C
N
11
N
N
N
12
N
C
N
13
N
C
N
14
R
C
N
15
N
C
Y
16
N
C
Y
17
N
C
Y
18
N
C
Y
19
N
C
Y
20
N
C
Y
21
N
C
N
22
N
C
Y
23
N
C
Y
24
N
C
Y
25
N
C
Y
26
N
C
Y
27
N
C
Y
28
N
C
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
N
N
50
S
C
N
51
N
C
N
52
N
O
N
53
N
C
N
54
N
O
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
N
N
63
S
C
N
64
N
C
N
65
N
O
N
66
N
C
N
67
N
C
N
68
N
C
N
69
N
N
N
70
N
C
N
71
N
N
N
72
N
N
N
73
N
O
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
S
C
N
91
N
C
N
92
N
O
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
N
N
107
S
C
N
108
N
C
N
109
N
O
N
110
N
C
N
111
N
C
N
112
N
O
N
113
N
O
N
114
N
O
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
N
N
123
R
C
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
S
N
128
N
O
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
N
N
137
S
C
N
138
N
C
N
139
N
O
N
140
N
C
N
141
N
C
N
142
N
C
N
143
N
O
N
144
N
N
N
145
N
O
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
N
N
157
S
C
N
158
N
C
N
159
N
O
N
160
N
C
N
161
N
C
N
162
N
C
N
163
N
O
N
164
N
O
N
165
N
O
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
N
N
176
N
C
N
177
N
C
N
178
N
O
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
N
N
186
S
C
N
187
N
C
N
188
N
O
N
189
N
C
Y
190
N
C
Y
191
N
N
Y
192
N
C
Y
193
N
C
Y
194
N
N
N
195
N
O
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
O
N
207
N
H
N
208
N
H
N
209
N
N
N
210
S
C
N
211
N
C
N
212
N
O
N
213
S
C
N
214
N
C
N
215
N
C
N
216
N
C
N
217
N
O
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
K
N
232
N
N
N
233
S
C
N
234
N
C
N
235
N
O
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
C
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
N
N
255
S
C
N
256
N
C
N
257
N
O
N
258
N
C
N
259
N
C
N
260
N
C
N
261
N
C
N
262
N
N
N
263
N
O
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
N
N
280
S
C
N
281
N
C
N
282
N
O
N
283
N
C
N
284
N
C
N
285
N
S
N
286
N
C
N
287
N
O
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
N
N
300
S
C
N
301
N
C
N
302
N
O
N
303
N
C
Y
304
N
C
Y
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
C
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
N
C
N
327
N
C
N
328
N
C
N
329
N
O
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
N
N
340
S
C
N
341
N
C
N
342
N
O
N
343
N
C
N
344
N
O
N
345
N
O
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
N
N
354
S
C
N
355
N
C
N
356
N
O
N
357
R
C
N
358
N
O
N
359
N
C
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
N
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
N
384
N
O
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
N
N
398
S
C
N
399
N
C
N
400
N
O
N
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
N
408
N
O
N
409
N
O
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
N
N
422
S
C
N
423
N
C
N
424
N
O
N
425
N
C
N
426
N
C
N
427
N
C
N
428
N
O
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
doub
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
doub
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
Y
18
N
doub
Y
19
N
sing
Y
20
N
sing
Y
21
N
doub
Y
22
N
sing
Y
23
N
doub
N
24
N
sing
Y
25
N
doub
Y
26
N
sing
Y
27
N
sing
Y
28
N
doub
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
doub
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
doub
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
doub
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
Y
190
N
sing
Y
191
N
doub
Y
192
N
doub
N
193
N
sing
Y
194
N
sing
N
195
N
sing
Y
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
doub
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
doub
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
doub
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
Y
298
N
doub
Y
299
N
sing
Y
300
N
sing
N
301
N
sing
Y
302
N
doub
N
303
N
sing
Y
304
N
doub
N
305
N
sing
Y
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
doub
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
Y
367
N
doub
Y
368
N
sing
Y
369
N
sing
N
370
N
sing
Y
371
N
doub
Y
372
N
sing
Y
373
N
sing
N
374
N
sing
Y
375
N
sing
Y
376
N
doub
N
377
N
sing
Y
378
N
doub
N
379
N
sing
Y
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
doub
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
Y
395
N
doub
Y
396
N
sing
Y
397
N
sing
N
398
N
sing
Y
399
N
doub
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
doub
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
UK
Bioorg.Med.Chem.
BMECEP
1200
0968-0896
19
4626
4634
10.1016/j.bmc.2011.06.030
21723733
Human HDAC isoform selectivity achieved via exploitation of the acetate release channel with structurally unique small molecule inhibitors.
2011
10.2210/pdb3sff/pdb
pdb_00003sff
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2005-07-01
MAR CCD 165 mm
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
17-BM
APS
1.0
SYNCHROTRON
APS BEAMLINE 17-BM
41889.551
Histone deacetylase 8
3.5.1.98
1
man
polymer
407.842
(2R)-2-amino-3-(3-chlorophenyl)-1-[4-(2,5-difluorobenzoyl)piperazin-1-yl]propan-1-one
1
syn
non-polymer
39.098
POTASSIUM ION
2
syn
non-polymer
65.409
ZINC ION
1
syn
non-polymer
18.015
water
234
nat
water
HDAC8, HD8
no
no
SMEEPEEPADSGQSLVPVYIYSPEYVSMCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHL
QKVSQEGDDDHPDSIEYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAV
LGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEK
YYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLT
GVILGKTLSSEIPDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHVV
SMEEPEEPADSGQSLVPVYIYSPEYVSMCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHL
QKVSQEGDDDHPDSIEYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAV
LGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEK
YYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLT
GVILGKTLSSEIPDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHVV
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
fall armyworm
sample
HDAC8, HDACL1, CDA07
9606
Homo sapiens
7108
Spodoptera frugiperda
SF9
baculovirus
NPL007254
1
2.15
42.74
VAPOR DIFFUSION, HANGING DROP
8.0
100 mM Tris, pH 8.0, 500 mM NDSB-201, 12% PEG3350, 18% isopropanol, cryoprotectant: 15% glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
1
0
2011-07-20
1
1
2011-08-03
1
2
2024-02-28
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2011-06-13
REL
REL
0DI
(2R)-2-amino-3-(3-chlorophenyl)-1-[4-(2,5-difluorobenzoyl)piperazin-1-yl]propan-1-one
K
POTASSIUM ION
ZN
ZINC ION
HOH
water
0DI
1
2
0DI
0DI
378
A
K1
401
3
K
K
401
A
K1
402
3
K
K
402
A
ZN
403
4
ZN
ZN
403
A
HOH
602
5
HOH
HOH
602
A
HOH
603
5
HOH
HOH
603
A
HOH
604
5
HOH
HOH
604
A
HOH
605
5
HOH
HOH
605
A
HOH
607
5
HOH
HOH
607
A
HOH
608
5
HOH
HOH
608
A
HOH
609
5
HOH
HOH
609
A
HOH
610
5
HOH
HOH
610
A
HOH
611
5
HOH
HOH
611
A
HOH
612
5
HOH
HOH
612
A
HOH
614
5
HOH
HOH
614
A
HOH
615
5
HOH
HOH
615
A
HOH
616
5
HOH
HOH
616
A
HOH
617
5
HOH
HOH
617
A
HOH
618
5
HOH
HOH
618
A
HOH
619
5
HOH
HOH
619
A
HOH
621
5
HOH
HOH
621
A
HOH
622
5
HOH
HOH
622
A
HOH
623
5
HOH
HOH
623
A
HOH
624
5
HOH
HOH
624
A
HOH
625
5
HOH
HOH
625
A
HOH
626
5
HOH
HOH
626
A
HOH
627
5
HOH
HOH
627
A
HOH
628
5
HOH
HOH
628
A
HOH
629
5
HOH
HOH
629
A
HOH
631
5
HOH
HOH
631
A
HOH
632
5
HOH
HOH
632
A
HOH
633
5
HOH
HOH
633
A
HOH
635
5
HOH
HOH
635
A
HOH
636
5
HOH
HOH
636
A
HOH
637
5
HOH
HOH
637
A
HOH
638
5
HOH
HOH
638
A
HOH
640
5
HOH
HOH
640
A
HOH
641
5
HOH
HOH
641
A
HOH
642
5
HOH
HOH
642
A
HOH
643
5
HOH
HOH
643
A
HOH
644
5
HOH
HOH
644
A
HOH
647
5
HOH
HOH
647
A
HOH
648
5
HOH
HOH
648
A
HOH
649
5
HOH
HOH
649
A
HOH
650
5
HOH
HOH
650
A
HOH
651
5
HOH
HOH
651
A
HOH
653
5
HOH
HOH
653
A
HOH
654
5
HOH
HOH
654
A
HOH
656
5
HOH
HOH
656
A
HOH
660
5
HOH
HOH
660
A
HOH
665
5
HOH
HOH
665
A
HOH
666
5
HOH
HOH
666
A
HOH
667
5
HOH
HOH
667
A
HOH
669
5
HOH
HOH
669
A
HOH
671
5
HOH
HOH
671
A
HOH
673
5
HOH
HOH
673
A
HOH
674
5
HOH
HOH
674
A
HOH
675
5
HOH
HOH
675
A
HOH
676
5
HOH
HOH
676
A
HOH
677
5
HOH
HOH
677
A
HOH
679
5
HOH
HOH
679
A
HOH
681
5
HOH
HOH
681
A
HOH
682
5
HOH
HOH
682
A
HOH
683
5
HOH
HOH
683
A
HOH
685
5
HOH
HOH
685
A
HOH
690
5
HOH
HOH
690
A
HOH
692
5
HOH
HOH
692
A
HOH
693
5
HOH
HOH
693
A
HOH
695
5
HOH
HOH
695
A
HOH
699
5
HOH
HOH
699
A
HOH
701
5
HOH
HOH
701
A
HOH
702
5
HOH
HOH
702
A
HOH
704
5
HOH
HOH
704
A
HOH
707
5
HOH
HOH
707
A
HOH
709
5
HOH
HOH
709
A
HOH
710
5
HOH
HOH
710
A
HOH
713
5
HOH
HOH
713
A
HOH
726
5
HOH
HOH
726
A
HOH
731
5
HOH
HOH
731
A
HOH
733
5
HOH
HOH
733
A
HOH
742
5
HOH
HOH
742
A
HOH
747
5
HOH
HOH
747
A
HOH
749
5
HOH
HOH
749
A
HOH
758
5
HOH
HOH
758
A
HOH
760
5
HOH
HOH
760
A
HOH
763
5
HOH
HOH
763
A
HOH
769
5
HOH
HOH
769
A
HOH
778
5
HOH
HOH
778
A
HOH
781
5
HOH
HOH
781
A
HOH
782
5
HOH
HOH
782
A
HOH
783
5
HOH
HOH
783
A
HOH
784
5
HOH
HOH
784
A
HOH
785
5
HOH
HOH
785
A
HOH
786
5
HOH
HOH
786
A
HOH
787
5
HOH
HOH
787
A
HOH
788
5
HOH
HOH
788
A
HOH
789
5
HOH
HOH
789
A
HOH
790
5
HOH
HOH
790
A
HOH
793
5
HOH
HOH
793
A
HOH
794
5
HOH
HOH
794
A
HOH
795
5
HOH
HOH
795
A
HOH
796
5
HOH
HOH
796
A
HOH
798
5
HOH
HOH
798
A
HOH
800
5
HOH
HOH
800
A
HOH
801
5
HOH
HOH
801
A
HOH
802
5
HOH
HOH
802
A
HOH
804
5
HOH
HOH
804
A
HOH
805
5
HOH
HOH
805
A
HOH
808
5
HOH
HOH
808
A
HOH
809
5
HOH
HOH
809
A
HOH
811
5
HOH
HOH
811
A
HOH
812
5
HOH
HOH
812
A
HOH
813
5
HOH
HOH
813
A
HOH
814
5
HOH
HOH
814
A
HOH
817
5
HOH
HOH
817
A
HOH
818
5
HOH
HOH
818
A
HOH
822
5
HOH
HOH
822
A
HOH
824
5
HOH
HOH
824
A
HOH
829
5
HOH
HOH
829
A
HOH
831
5
HOH
HOH
831
A
HOH
832
5
HOH
HOH
832
A
HOH
833
5
HOH
HOH
833
A
HOH
839
5
HOH
HOH
839
A
HOH
842
5
HOH
HOH
842
A
HOH
845
5
HOH
HOH
845
A
HOH
846
5
HOH
HOH
846
A
HOH
848
5
HOH
HOH
848
A
HOH
849
5
HOH
HOH
849
A
HOH
855
5
HOH
HOH
855
A
HOH
856
5
HOH
HOH
856
A
HOH
862
5
HOH
HOH
862
A
HOH
872
5
HOH
HOH
872
A
HOH
881
5
HOH
HOH
881
A
HOH
888
5
HOH
HOH
888
A
HOH
889
5
HOH
HOH
889
A
HOH
890
5
HOH
HOH
890
A
HOH
891
5
HOH
HOH
891
A
HOH
892
5
HOH
HOH
892
A
HOH
895
5
HOH
HOH
895
A
HOH
896
5
HOH
HOH
896
A
HOH
897
5
HOH
HOH
897
A
HOH
898
5
HOH
HOH
898
A
HOH
899
5
HOH
HOH
899
A
HOH
900
5
HOH
HOH
900
A
HOH
901
5
HOH
HOH
901
A
HOH
903
5
HOH
HOH
903
A
HOH
905
5
HOH
HOH
905
A
HOH
906
5
HOH
HOH
906
A
HOH
907
5
HOH
HOH
907
A
HOH
908
5
HOH
HOH
908
A
HOH
909
5
HOH
HOH
909
A
HOH
910
5
HOH
HOH
910
A
HOH
911
5
HOH
HOH
911
A
HOH
913
5
HOH
HOH
913
A
HOH
914
5
HOH
HOH
914
A
HOH
916
5
HOH
HOH
916
A
HOH
917
5
HOH
HOH
917
A
HOH
918
5
HOH
HOH
918
A
HOH
920
5
HOH
HOH
920
A
HOH
922
5
HOH
HOH
922
A
HOH
923
5
HOH
HOH
923
A
HOH
924
5
HOH
HOH
924
A
HOH
925
5
HOH
HOH
925
A
HOH
927
5
HOH
HOH
927
A
HOH
928
5
HOH
HOH
928
A
HOH
929
5
HOH
HOH
929
A
HOH
931
5
HOH
HOH
931
A
HOH
932
5
HOH
HOH
932
A
HOH
933
5
HOH
HOH
933
A
HOH
934
5
HOH
HOH
934
A
HOH
935
5
HOH
HOH
935
A
HOH
938
5
HOH
HOH
938
A
HOH
940
5
HOH
HOH
940
A
HOH
942
5
HOH
HOH
942
A
HOH
943
5
HOH
HOH
943
A
HOH
945
5
HOH
HOH
945
A
HOH
946
5
HOH
HOH
946
A
HOH
947
5
HOH
HOH
947
A
HOH
951
5
HOH
HOH
951
A
HOH
955
5
HOH
HOH
955
A
HOH
956
5
HOH
HOH
956
A
HOH
959
5
HOH
HOH
959
A
HOH
960
5
HOH
HOH
960
A
HOH
962
5
HOH
HOH
962
A
HOH
963
5
HOH
HOH
963
A
HOH
964
5
HOH
HOH
964
A
HOH
970
5
HOH
HOH
970
A
HOH
972
5
HOH
HOH
972
A
HOH
973
5
HOH
HOH
973
A
HOH
974
5
HOH
HOH
974
A
HOH
976
5
HOH
HOH
976
A
HOH
978
5
HOH
HOH
978
A
HOH
980
5
HOH
HOH
980
A
HOH
984
5
HOH
HOH
984
A
HOH
987
5
HOH
HOH
987
A
HOH
988
5
HOH
HOH
988
A
HOH
991
5
HOH
HOH
991
A
HOH
992
5
HOH
HOH
992
A
HOH
995
5
HOH
HOH
995
A
HOH
1000
5
HOH
HOH
1000
A
HOH
1001
5
HOH
HOH
1001
A
HOH
1002
5
HOH
HOH
1002
A
HOH
1007
5
HOH
HOH
1007
A
HOH
1008
5
HOH
HOH
1008
A
HOH
1009
5
HOH
HOH
1009
A
HOH
1013
5
HOH
HOH
1013
A
HOH
1014
5
HOH
HOH
1014
A
HOH
1015
5
HOH
HOH
1015
A
HOH
1016
5
HOH
HOH
1016
A
HOH
1017
5
HOH
HOH
1017
A
HOH
1021
5
HOH
HOH
1021
A
HOH
1022
5
HOH
HOH
1022
A
HOH
1023
5
HOH
HOH
1023
A
HOH
1025
5
HOH
HOH
1025
A
HOH
1026
5
HOH
HOH
1026
A
HOH
1028
5
HOH
HOH
1028
A
HOH
1029
5
HOH
HOH
1029
A
HOH
1032
5
HOH
HOH
1032
A
HOH
1037
5
HOH
HOH
1037
A
HOH
1042
5
HOH
HOH
1042
A
HOH
1044
5
HOH
HOH
1044
A
HOH
1046
5
HOH
HOH
1046
A
HOH
1050
5
HOH
HOH
1050
A
HOH
1051
5
HOH
HOH
1051
A
HOH
1052
5
HOH
HOH
1052
A
HOH
1053
5
HOH
HOH
1053
A
HOH
1054
5
HOH
HOH
1054
A
HOH
1055
5
HOH
HOH
1055
A
HOH
1056
5
HOH
HOH
1056
A
HOH
1057
5
HOH
HOH
1057
A
HOH
1058
5
HOH
HOH
1058
A
HOH
1059
5
HOH
HOH
1059
A
HOH
1060
5
HOH
HOH
1060
A
HOH
1061
5
HOH
HOH
1061
A
HOH
1062
5
HOH
HOH
1062
A
HOH
1063
5
HOH
HOH
1063
A
HOH
1064
5
HOH
HOH
1064
A
HOH
1065
5
HOH
HOH
1065
A
n
1
0
A
n
2
1
A
n
3
2
A
n
4
3
A
n
5
4
A
n
6
5
A
n
7
6
A
n
8
7
A
n
9
8
A
n
10
9
A
n
11
10
A
n
12
11
A
n
13
12
A
n
14
13
A
LEU
14
n
15
LEU
14
A
VAL
15
n
16
VAL
15
A
PRO
16
n
17
PRO
16
A
VAL
17
n
18
VAL
17
A
TYR
18
n
19
TYR
18
A
ILE
19
n
20
ILE
19
A
TYR
20
n
21
TYR
20
A
SER
21
n
22
SER
21
A
PRO
22
n
23
PRO
22
A
GLU
23
n
24
GLU
23
A
TYR
24
n
25
TYR
24
A
VAL
25
n
26
VAL
25
A
SER
26
n
27
SER
26
A
MET
27
n
28
MET
27
A
CYS
28
n
29
CYS
28
A
ASP
29
n
30
ASP
29
A
SER
30
n
31
SER
30
A
LEU
31
n
32
LEU
31
A
ALA
32
n
33
ALA
32
A
LYS
33
n
34
LYS
33
A
ILE
34
n
35
ILE
34
A
PRO
35
n
36
PRO
35
A
LYS
36
n
37
LYS
36
A
ARG
37
n
38
ARG
37
A
ALA
38
n
39
ALA
38
A
SER
39
n
40
SER
39
A
MET
40
n
41
MET
40
A
VAL
41
n
42
VAL
41
A
HIS
42
n
43
HIS
42
A
SER
43
n
44
SER
43
A
LEU
44
n
45
LEU
44
A
ILE
45
n
46
ILE
45
A
GLU
46
n
47
GLU
46
A
ALA
47
n
48
ALA
47
A
TYR
48
n
49
TYR
48
A
ALA
49
n
50
ALA
49
A
LEU
50
n
51
LEU
50
A
HIS
51
n
52
HIS
51
A
LYS
52
n
53
LYS
52
A
GLN
53
n
54
GLN
53
A
MET
54
n
55
MET
54
A
ARG
55
n
56
ARG
55
A
ILE
56
n
57
ILE
56
A
VAL
57
n
58
VAL
57
A
LYS
58
n
59
LYS
58
A
PRO
59
n
60
PRO
59
A
LYS
60
n
61
LYS
60
A
VAL
61
n
62
VAL
61
A
ALA
62
n
63
ALA
62
A
SER
63
n
64
SER
63
A
MET
64
n
65
MET
64
A
GLU
65
n
66
GLU
65
A
GLU
66
n
67
GLU
66
A
MET
67
n
68
MET
67
A
ALA
68
n
69
ALA
68
A
THR
69
n
70
THR
69
A
PHE
70
n
71
PHE
70
A
HIS
71
n
72
HIS
71
A
THR
72
n
73
THR
72
A
ASP
73
n
74
ASP
73
A
ALA
74
n
75
ALA
74
A
TYR
75
n
76
TYR
75
A
LEU
76
n
77
LEU
76
A
GLN
77
n
78
GLN
77
A
HIS
78
n
79
HIS
78
A
LEU
79
n
80
LEU
79
A
GLN
80
n
81
GLN
80
A
LYS
81
n
82
LYS
81
A
VAL
82
n
83
VAL
82
A
SER
83
n
84
SER
83
A
n
85
84
A
n
86
85
A
n
87
86
A
n
88
87
A
n
89
88
A
n
90
89
A
n
91
90
A
n
92
91
A
n
93
92
A
n
94
93
A
n
95
94
A
n
96
95
A
n
97
96
A
n
98
97
A
n
99
98
A
n
100
99
A
n
101
100
A
n
102
101
A
n
103
102
A
n
104
103
A
n
105
104
A
n
106
105
A
n
107
106
A
GLY
107
n
108
GLY
107
A
ILE
108
n
109
ILE
108
A
PHE
109
n
110
PHE
109
A
ASP
110
n
111
ASP
110
A
TYR
111
n
112
TYR
111
A
ALA
112
n
113
ALA
112
A
ALA
113
n
114
ALA
113
A
ALA
114
n
115
ALA
114
A
ILE
115
n
116
ILE
115
A
GLY
116
n
117
GLY
116
A
GLY
117
n
118
GLY
117
A
ALA
118
n
119
ALA
118
A
THR
119
n
120
THR
119
A
ILE
120
n
121
ILE
120
A
THR
121
n
122
THR
121
A
ALA
122
n
123
ALA
122
A
ALA
123
n
124
ALA
123
A
GLN
124
n
125
GLN
124
A
CYS
125
n
126
CYS
125
A
LEU
126
n
127
LEU
126
A
ILE
127
n
128
ILE
127
A
ASP
128
n
129
ASP
128
A
GLY
129
n
130
GLY
129
A
MET
130
n
131
MET
130
A
CYS
131
n
132
CYS
131
A
LYS
132
n
133
LYS
132
A
VAL
133
n
134
VAL
133
A
ALA
134
n
135
ALA
134
A
ILE
135
n
136
ILE
135
A
ASN
136
n
137
ASN
136
A
TRP
137
n
138
TRP
137
A
SER
138
n
139
SER
138
A
GLY
139
n
140
GLY
139
A
GLY
140
n
141
GLY
140
A
TRP
141
n
142
TRP
141
A
HIS
142
n
143
HIS
142
A
HIS
143
n
144
HIS
143
A
ALA
144
n
145
ALA
144
A
LYS
145
n
146
LYS
145
A
LYS
146
n
147
LYS
146
A
ASP
147
n
148
ASP
147
A
GLU
148
n
149
GLU
148
A
ALA
149
n
150
ALA
149
A
SER
150
n
151
SER
150
A
GLY
151
n
152
GLY
151
A
PHE
152
n
153
PHE
152
A
CYS
153
n
154
CYS
153
A
TYR
154
n
155
TYR
154
A
LEU
155
n
156
LEU
155
A
ASN
156
n
157
ASN
156
A
ASP
157
n
158
ASP
157
A
ALA
158
n
159
ALA
158
A
VAL
159
n
160
VAL
159
A
LEU
160
n
161
LEU
160
A
GLY
161
n
162
GLY
161
A
ILE
162
n
163
ILE
162
A
LEU
163
n
164
LEU
163
A
ARG
164
n
165
ARG
164
A
LEU
165
n
166
LEU
165
A
ARG
166
n
167
ARG
166
A
ARG
167
n
168
ARG
167
A
LYS
168
n
169
LYS
168
A
PHE
169
n
170
PHE
169
A
GLU
170
n
171
GLU
170
A
ARG
171
n
172
ARG
171
A
ILE
172
n
173
ILE
172
A
LEU
173
n
174
LEU
173
A
TYR
174
n
175
TYR
174
A
VAL
175
n
176
VAL
175
A
ASP
176
n
177
ASP
176
A
LEU
177
n
178
LEU
177
A
ASP
178
n
179
ASP
178
A
LEU
179
n
180
LEU
179
A
HIS
180
n
181
HIS
180
A
HIS
181
n
182
HIS
181
A
GLY
182
n
183
GLY
182
A
ASP
183
n
184
ASP
183
A
GLY
184
n
185
GLY
184
A
VAL
185
n
186
VAL
185
A
GLU
186
n
187
GLU
186
A
ASP
187
n
188
ASP
187
A
ALA
188
n
189
ALA
188
A
PHE
189
n
190
PHE
189
A
SER
190
n
191
SER
190
A
PHE
191
n
192
PHE
191
A
THR
192
n
193
THR
192
A
SER
193
n
194
SER
193
A
LYS
194
n
195
LYS
194
A
VAL
195
n
196
VAL
195
A
MET
196
n
197
MET
196
A
THR
197
n
198
THR
197
A
VAL
198
n
199
VAL
198
A
SER
199
n
200
SER
199
A
LEU
200
n
201
LEU
200
A
HIS
201
n
202
HIS
201
A
LYS
202
n
203
LYS
202
A
PHE
203
n
204
PHE
203
A
SER
204
n
205
SER
204
A
PRO
205
n
206
PRO
205
A
GLY
206
n
207
GLY
206
A
PHE
207
n
208
PHE
207
A
PHE
208
n
209
PHE
208
A
PRO
209
n
210
PRO
209
A
GLY
210
n
211
GLY
210
A
THR
211
n
212
THR
211
A
GLY
212
n
213
GLY
212
A
ASP
213
n
214
ASP
213
A
VAL
214
n
215
VAL
214
A
SER
215
n
216
SER
215
A
ASP
216
n
217
ASP
216
A
VAL
217
n
218
VAL
217
A
GLY
218
n
219
GLY
218
A
LEU
219
n
220
LEU
219
A
GLY
220
n
221
GLY
220
A
LYS
221
n
222
LYS
221
A
GLY
222
n
223
GLY
222
A
ARG
223
n
224
ARG
223
A
TYR
224
n
225
TYR
224
A
TYR
225
n
226
TYR
225
A
SER
226
n
227
SER
226
A
VAL
227
n
228
VAL
227
A
ASN
228
n
229
ASN
228
A
VAL
229
n
230
VAL
229
A
PRO
230
n
231
PRO
230
A
ILE
231
n
232
ILE
231
A
GLN
232
n
233
GLN
232
A
ASP
233
n
234
ASP
233
A
GLY
234
n
235
GLY
234
A
ILE
235
n
236
ILE
235
A
GLN
236
n
237
GLN
236
A
ASP
237
n
238
ASP
237
A
GLU
238
n
239
GLU
238
A
LYS
239
n
240
LYS
239
A
TYR
240
n
241
TYR
240
A
TYR
241
n
242
TYR
241
A
GLN
242
n
243
GLN
242
A
ILE
243
n
244
ILE
243
A
CYS
244
n
245
CYS
244
A
GLU
245
n
246
GLU
245
A
SER
246
n
247
SER
246
A
VAL
247
n
248
VAL
247
A
LEU
248
n
249
LEU
248
A
LYS
249
n
250
LYS
249
A
GLU
250
n
251
GLU
250
A
VAL
251
n
252
VAL
251
A
TYR
252
n
253
TYR
252
A
GLN
253
n
254
GLN
253
A
ALA
254
n
255
ALA
254
A
PHE
255
n
256
PHE
255
A
ASN
256
n
257
ASN
256
A
PRO
257
n
258
PRO
257
A
LYS
258
n
259
LYS
258
A
ALA
259
n
260
ALA
259
A
VAL
260
n
261
VAL
260
A
VAL
261
n
262
VAL
261
A
LEU
262
n
263
LEU
262
A
GLN
263
n
264
GLN
263
A
LEU
264
n
265
LEU
264
A
GLY
265
n
266
GLY
265
A
ALA
266
n
267
ALA
266
A
ASP
267
n
268
ASP
267
A
THR
268
n
269
THR
268
A
ILE
269
n
270
ILE
269
A
ALA
270
n
271
ALA
270
A
GLY
271
n
272
GLY
271
A
ASP
272
n
273
ASP
272
A
PRO
273
n
274
PRO
273
A
MET
274
n
275
MET
274
A
CYS
275
n
276
CYS
275
A
SER
276
n
277
SER
276
A
PHE
277
n
278
PHE
277
A
ASN
278
n
279
ASN
278
A
MET
279
n
280
MET
279
A
THR
280
n
281
THR
280
A
PRO
281
n
282
PRO
281
A
VAL
282
n
283
VAL
282
A
GLY
283
n
284
GLY
283
A
ILE
284
n
285
ILE
284
A
GLY
285
n
286
GLY
285
A
LYS
286
n
287
LYS
286
A
CYS
287
n
288
CYS
287
A
LEU
288
n
289
LEU
288
A
LYS
289
n
290
LYS
289
A
TYR
290
n
291
TYR
290
A
ILE
291
n
292
ILE
291
A
LEU
292
n
293
LEU
292
A
GLN
293
n
294
GLN
293
A
TRP
294
n
295
TRP
294
A
GLN
295
n
296
GLN
295
A
LEU
296
n
297
LEU
296
A
ALA
297
n
298
ALA
297
A
THR
298
n
299
THR
298
A
LEU
299
n
300
LEU
299
A
ILE
300
n
301
ILE
300
A
LEU
301
n
302
LEU
301
A
GLY
302
n
303
GLY
302
A
GLY
303
n
304
GLY
303
A
GLY
304
n
305
GLY
304
A
GLY
305
n
306
GLY
305
A
TYR
306
n
307
TYR
306
A
ASN
307
n
308
ASN
307
A
LEU
308
n
309
LEU
308
A
ALA
309
n
310
ALA
309
A
ASN
310
n
311
ASN
310
A
THR
311
n
312
THR
311
A
ALA
312
n
313
ALA
312
A
ARG
313
n
314
ARG
313
A
CYS
314
n
315
CYS
314
A
TRP
315
n
316
TRP
315
A
THR
316
n
317
THR
316
A
TYR
317
n
318
TYR
317
A
LEU
318
n
319
LEU
318
A
THR
319
n
320
THR
319
A
GLY
320
n
321
GLY
320
A
VAL
321
n
322
VAL
321
A
ILE
322
n
323
ILE
322
A
LEU
323
n
324
LEU
323
A
GLY
324
n
325
GLY
324
A
LYS
325
n
326
LYS
325
A
THR
326
n
327
THR
326
A
LEU
327
n
328
LEU
327
A
SER
328
n
329
SER
328
A
SER
329
n
330
SER
329
A
GLU
330
n
331
GLU
330
A
ILE
331
n
332
ILE
331
A
PRO
332
n
333
PRO
332
A
ASP
333
n
334
ASP
333
A
HIS
334
n
335
HIS
334
A
GLU
335
n
336
GLU
335
A
PHE
336
n
337
PHE
336
A
PHE
337
n
338
PHE
337
A
THR
338
n
339
THR
338
A
ALA
339
n
340
ALA
339
A
TYR
340
n
341
TYR
340
A
GLY
341
n
342
GLY
341
A
PRO
342
n
343
PRO
342
A
ASP
343
n
344
ASP
343
A
TYR
344
n
345
TYR
344
A
VAL
345
n
346
VAL
345
A
LEU
346
n
347
LEU
346
A
GLU
347
n
348
GLU
347
A
ILE
348
n
349
ILE
348
A
THR
349
n
350
THR
349
A
PRO
350
n
351
PRO
350
A
SER
351
n
352
SER
351
A
CYS
352
n
353
CYS
352
A
ARG
353
n
354
ARG
353
A
PRO
354
n
355
PRO
354
A
ASP
355
n
356
ASP
355
A
ARG
356
n
357
ARG
356
A
ASN
357
n
358
ASN
357
A
GLU
358
n
359
GLU
358
A
PRO
359
n
360
PRO
359
A
HIS
360
n
361
HIS
360
A
ARG
361
n
362
ARG
361
A
ILE
362
n
363
ILE
362
A
GLN
363
n
364
GLN
363
A
GLN
364
n
365
GLN
364
A
ILE
365
n
366
ILE
365
A
LEU
366
n
367
LEU
366
A
ASN
367
n
368
ASN
367
A
TYR
368
n
369
TYR
368
A
ILE
369
n
370
ILE
369
A
LYS
370
n
371
LYS
370
A
GLY
371
n
372
GLY
371
A
ASN
372
n
373
ASN
372
A
LEU
373
n
374
LEU
373
A
LYS
374
n
375
LYS
374
A
HIS
375
n
376
HIS
375
A
VAL
376
n
377
VAL
376
A
VAL
377
n
378
VAL
377
A
author_and_software_defined_assembly
PISA
1
monomeric
A
ASP
176
A
OD1
ASP
177
1_555
A
K
401
C
K
K
1_555
A
ASP
176
A
O
ASP
177
1_555
75.6
A
ASP
176
A
OD1
ASP
177
1_555
A
K
401
C
K
K
1_555
A
ASP
178
A
O
ASP
179
1_555
101.1
A
ASP
176
A
O
ASP
177
1_555
A
K
401
C
K
K
1_555
A
ASP
178
A
O
ASP
179
1_555
109.0
A
ASP
176
A
OD1
ASP
177
1_555
A
K
401
C
K
K
1_555
A
HIS
180
A
O
HIS
181
1_555
89.9
A
ASP
176
A
O
ASP
177
1_555
A
K
401
C
K
K
1_555
A
HIS
180
A
O
HIS
181
1_555
164.6
A
ASP
178
A
O
ASP
179
1_555
A
K
401
C
K
K
1_555
A
HIS
180
A
O
HIS
181
1_555
78.6
A
ASP
176
A
OD1
ASP
177
1_555
A
K
401
C
K
K
1_555
A
SER
199
A
OG
SER
200
1_555
106.0
A
ASP
176
A
O
ASP
177
1_555
A
K
401
C
K
K
1_555
A
SER
199
A
OG
SER
200
1_555
86.2
A
ASP
178
A
O
ASP
179
1_555
A
K
401
C
K
K
1_555
A
SER
199
A
OG
SER
200
1_555
151.6
A
HIS
180
A
O
HIS
181
1_555
A
K
401
C
K
K
1_555
A
SER
199
A
OG
SER
200
1_555
92.9
A
ASP
176
A
OD1
ASP
177
1_555
A
K
401
C
K
K
1_555
A
LEU
200
A
O
LEU
201
1_555
147.0
A
ASP
176
A
O
ASP
177
1_555
A
K
401
C
K
K
1_555
A
LEU
200
A
O
LEU
201
1_555
76.8
A
ASP
178
A
O
ASP
179
1_555
A
K
401
C
K
K
1_555
A
LEU
200
A
O
LEU
201
1_555
71.4
A
HIS
180
A
O
HIS
181
1_555
A
K
401
C
K
K
1_555
A
LEU
200
A
O
LEU
201
1_555
118.6
A
SER
199
A
OG
SER
200
1_555
A
K
401
C
K
K
1_555
A
LEU
200
A
O
LEU
201
1_555
89.9
A
ASP
178
A
OD1
ASP
179
1_555
A
ZN
403
E
ZN
ZN
1_555
A
HIS
180
A
ND1
HIS
181
1_555
104.3
A
ASP
178
A
OD1
ASP
179
1_555
A
ZN
403
E
ZN
ZN
1_555
A
ASP
267
A
OD2
ASP
268
1_555
114.7
A
HIS
180
A
ND1
HIS
181
1_555
A
ZN
403
E
ZN
ZN
1_555
A
ASP
267
A
OD2
ASP
268
1_555
97.9
A
ASP
178
A
OD1
ASP
179
1_555
A
ZN
403
E
ZN
ZN
1_555
A
0DI
378
B
N3
0DI
1_555
95.0
A
HIS
180
A
ND1
HIS
181
1_555
A
ZN
403
E
ZN
ZN
1_555
A
0DI
378
B
N3
0DI
1_555
109.6
A
ASP
267
A
OD2
ASP
268
1_555
A
ZN
403
E
ZN
ZN
1_555
A
0DI
378
B
N3
0DI
1_555
132.9
A
PHE
189
A
O
PHE
190
1_555
A
K
402
D
K
K
1_555
A
THR
192
A
O
THR
193
1_555
78.8
A
PHE
189
A
O
PHE
190
1_555
A
K
402
D
K
K
1_555
A
VAL
195
A
O
VAL
196
1_555
108.8
A
THR
192
A
O
THR
193
1_555
A
K
402
D
K
K
1_555
A
VAL
195
A
O
VAL
196
1_555
82.3
A
PHE
189
A
O
PHE
190
1_555
A
K
402
D
K
K
1_555
A
TYR
225
A
O
TYR
226
1_555
159.9
A
THR
192
A
O
THR
193
1_555
A
K
402
D
K
K
1_555
A
TYR
225
A
O
TYR
226
1_555
119.5
A
VAL
195
A
O
VAL
196
1_555
A
K
402
D
K
K
1_555
A
TYR
225
A
O
TYR
226
1_555
83.3
A
PHE
189
A
O
PHE
190
1_555
A
K
402
D
K
K
1_555
A
HOH
621
F
O
HOH
1_555
75.8
A
THR
192
A
O
THR
193
1_555
A
K
402
D
K
K
1_555
A
HOH
621
F
O
HOH
1_555
154.4
A
VAL
195
A
O
VAL
196
1_555
A
K
402
D
K
K
1_555
A
HOH
621
F
O
HOH
1_555
108.6
A
TYR
225
A
O
TYR
226
1_555
A
K
402
D
K
K
1_555
A
HOH
621
F
O
HOH
1_555
85.3
A
PHE
189
A
O
PHE
190
1_555
A
K
402
D
K
K
1_555
A
HOH
789
F
O
HOH
1_555
93.7
A
THR
192
A
O
THR
193
1_555
A
K
402
D
K
K
1_555
A
HOH
789
F
O
HOH
1_555
96.8
A
VAL
195
A
O
VAL
196
1_555
A
K
402
D
K
K
1_555
A
HOH
789
F
O
HOH
1_555
156.7
A
TYR
225
A
O
TYR
226
1_555
A
K
402
D
K
K
1_555
A
HOH
789
F
O
HOH
1_555
76.9
A
HOH
621
F
O
HOH
1_555
A
K
402
D
K
K
1_555
A
HOH
789
F
O
HOH
1_555
82.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ARG
55
A
O
ARG
56
A
N
TYR
18
A
N
TYR
19
A
N
ILE
19
A
N
ILE
20
A
O
ILE
135
A
O
ILE
136
A
N
ALA
134
A
N
ALA
135
A
O
ILE
300
A
O
ILE
301
A
O
LEU
299
A
O
LEU
300
A
N
LEU
262
A
N
LEU
263
A
O
VAL
261
A
O
VAL
262
A
N
VAL
175
A
N
VAL
176
A
N
TYR
174
A
N
TYR
175
A
O
MET
196
A
O
MET
197
A
N
SER
199
A
N
SER
200
A
O
VAL
229
A
O
VAL
230
1
A
SER
0
A
SER
1
1
Y
1
A
MET
1
A
MET
2
1
Y
1
A
GLU
2
A
GLU
3
1
Y
1
A
GLU
3
A
GLU
4
1
Y
1
A
PRO
4
A
PRO
5
1
Y
1
A
GLU
5
A
GLU
6
1
Y
1
A
GLU
6
A
GLU
7
1
Y
1
A
PRO
7
A
PRO
8
1
Y
1
A
ALA
8
A
ALA
9
1
Y
1
A
ASP
9
A
ASP
10
1
Y
1
A
SER
10
A
SER
11
1
Y
1
A
GLY
11
A
GLY
12
1
Y
1
A
GLN
12
A
GLN
13
1
Y
1
A
SER
13
A
SER
14
1
Y
1
A
GLN
84
A
GLN
85
1
Y
1
A
GLU
85
A
GLU
86
1
Y
1
A
GLY
86
A
GLY
87
1
Y
1
A
ASP
87
A
ASP
88
1
Y
1
A
ASP
88
A
ASP
89
1
Y
1
A
ASP
89
A
ASP
90
1
Y
1
A
HIS
90
A
HIS
91
1
Y
1
A
PRO
91
A
PRO
92
1
Y
1
A
ASP
92
A
ASP
93
1
Y
1
A
SER
93
A
SER
94
1
Y
1
A
ILE
94
A
ILE
95
1
Y
1
A
GLU
95
A
GLU
96
1
Y
1
A
TYR
96
A
TYR
97
1
Y
1
A
GLY
97
A
GLY
98
1
Y
1
A
LEU
98
A
LEU
99
1
Y
1
A
GLY
99
A
GLY
100
1
Y
1
A
TYR
100
A
TYR
101
1
Y
1
A
ASP
101
A
ASP
102
1
Y
1
A
CYS
102
A
CYS
103
1
Y
1
A
PRO
103
A
PRO
104
1
Y
1
A
ALA
104
A
ALA
105
1
Y
1
A
THR
105
A
THR
106
1
Y
1
A
GLU
106
A
GLU
107
1
Y
1
A
ALA
32
-32.38
-79.64
1
A
PHE
70
-126.38
-55.04
1
A
LEU
264
-119.28
50.02
27.47
4.5628
0.0000
-0.5136
2.6417
0.0000
-7.2046
0.9384
0.9113
0.2208
0.1767
0.1790
0.1790
2.00
29.00
1230
24068
24068
5.11
99.46
0.172
RANDOM
1
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
0.1770
0.1550
0.1540
Engh & Huber
0.213
2.00
29.00
234
2928
31
0
2663
931
SINUSOIDAL
2.000
56
HARMONIC
2.000
402
HARMONIC
5.000
2758
HARMONIC
20.000
0
SEMIHARMONIC
5.000
352
SEMIHARMONIC
5.000
3420
SEMIHARMONIC
4.000
0.010
2758
HARMONIC
2.000
1.030
3740
HARMONIC
2.000
3.090
17.740
0.2827
0.2332
0.2354
2.09
133
2732
2865
12
4.64
99.46
25.34
2.0
29.0
3SFF
24199
24068
0
0
0.13
1
99.46
data collection
HKL-2000
phasing
PHASER
refinement
BUSTER
2.11.1
data reduction
HKL-2000
data scaling
SCALEPACK
Crystal Structure of Human HDAC8 Inhibitor Complex, an Amino Acid Derived Inhibitor
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
5
N
N
A
SER
21
A
SER
22
HELX_P
A
SER
30
A
SER
31
1
1
10
A
LYS
36
A
LYS
37
HELX_P
A
TYR
48
A
TYR
49
1
2
13
A
ALA
49
A
ALA
50
HELX_P
A
MET
54
A
MET
55
5
3
6
A
SER
63
A
SER
64
HELX_P
A
ALA
68
A
ALA
69
1
4
6
A
THR
72
A
THR
73
HELX_P
A
SER
83
A
SER
84
1
5
12
A
GLY
107
A
GLY
108
HELX_P
A
ASP
128
A
ASP
129
1
6
22
A
ASN
156
A
ASN
157
HELX_P
A
ARG
166
A
ARG
167
1
7
11
A
GLY
182
A
GLY
183
HELX_P
A
PHE
189
A
PHE
190
1
8
8
A
LEU
219
A
LEU
220
HELX_P
A
ARG
223
A
ARG
224
5
9
5
A
GLN
236
A
GLN
237
HELX_P
A
ASN
256
A
ASN
257
1
10
21
A
GLY
265
A
GLY
266
HELX_P
A
ILE
269
A
ILE
270
5
11
5
A
THR
280
A
THR
281
HELX_P
A
GLN
293
A
GLN
294
1
12
14
A
ASN
307
A
ASN
308
HELX_P
A
GLY
324
A
GLY
325
1
13
18
A
PHE
336
A
PHE
337
HELX_P
A
GLY
341
A
GLY
342
5
14
6
A
GLU
358
A
GLU
359
HELX_P
A
LEU
373
A
LEU
374
1
15
16
A
LYS
374
A
LYS
375
HELX_P
A
VAL
376
A
VAL
377
5
16
3
metalc
2.608
A
ASP
176
A
OD1
ASP
177
1_555
A
K
401
C
K
K
1_555
metalc
2.723
A
ASP
176
A
O
ASP
177
1_555
A
K
401
C
K
K
1_555
metalc
2.590
A
ASP
178
A
O
ASP
179
1_555
A
K
401
C
K
K
1_555
metalc
1.939
A
ASP
178
A
OD1
ASP
179
1_555
A
ZN
403
E
ZN
ZN
1_555
metalc
2.762
A
HIS
180
A
O
HIS
181
1_555
A
K
401
C
K
K
1_555
metalc
2.153
A
HIS
180
A
ND1
HIS
181
1_555
A
ZN
403
E
ZN
ZN
1_555
metalc
2.588
A
PHE
189
A
O
PHE
190
1_555
A
K
402
D
K
K
1_555
metalc
2.716
A
THR
192
A
O
THR
193
1_555
A
K
402
D
K
K
1_555
metalc
2.571
A
VAL
195
A
O
VAL
196
1_555
A
K
402
D
K
K
1_555
metalc
2.845
A
SER
199
A
OG
SER
200
1_555
A
K
401
C
K
K
1_555
metalc
2.641
A
LEU
200
A
O
LEU
201
1_555
A
K
401
C
K
K
1_555
metalc
3.271
A
TYR
225
A
O
TYR
226
1_555
A
K
402
D
K
K
1_555
metalc
1.940
A
ASP
267
A
OD2
ASP
268
1_555
A
ZN
403
E
ZN
ZN
1_555
metalc
2.053
A
0DI
378
B
N3
0DI
1_555
A
ZN
403
E
ZN
ZN
1_555
metalc
2.881
A
K
402
D
K
K
1_555
A
HOH
621
F
O
HOH
1_555
metalc
2.644
A
K
402
D
K
K
1_555
A
HOH
789
F
O
HOH
1_555
HYDROLASE/HYDROLASE INHIBITOR
deacetylase, NVP-LCI785, HYDROLASE-HYDROLASE INHIBITOR complex
A
PHE
208
A
PHE
209
1
A
PRO
209
A
PRO
210
-3.51
A
GLY
341
A
GLY
342
1
A
PRO
342
A
PRO
343
0.31
HDAC8_HUMAN
UNP
1
1
Q9BY41
MEEPEEPADSGQSLVPVYIYSPEYVSMCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQ
KVSQEGDDDHPDSIEYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVL
GILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKY
YQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTG
VILGKTLSSEIPDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHVV
1
377
3SFF
1
377
Q9BY41
A
1
2
378
1
expression tag
SER
0
3SFF
A
Q9BY41
UNP
1
8
parallel
parallel
parallel
parallel
parallel
parallel
parallel
A
ARG
55
A
ARG
56
A
VAL
57
A
VAL
58
A
VAL
17
A
VAL
18
A
ILE
19
A
ILE
20
A
VAL
133
A
VAL
134
A
ASN
136
A
ASN
137
A
ALA
297
A
ALA
298
A
LEU
301
A
LEU
302
A
ALA
259
A
ALA
260
A
GLN
263
A
GLN
264
A
ILE
172
A
ILE
173
A
ASP
176
A
ASP
177
A
VAL
195
A
VAL
196
A
LYS
202
A
LYS
203
A
SER
226
A
SER
227
A
ILE
231
A
ILE
232
BINDING SITE FOR RESIDUE 0DI A 378
A
0DI
378
Software
17
BINDING SITE FOR RESIDUE K A 401
A
K
401
Software
5
BINDING SITE FOR RESIDUE K A 402
A
K
402
Software
6
BINDING SITE FOR RESIDUE ZN A 403
A
ZN
403
Software
4
A
GLY
140
A
GLY
141
17
1_555
A
TRP
141
A
TRP
142
17
1_555
A
HIS
142
A
HIS
143
17
1_555
A
HIS
143
A
HIS
144
17
1_555
A
GLY
151
A
GLY
152
17
1_555
A
PHE
152
A
PHE
153
17
1_555
A
ASP
178
A
ASP
179
17
1_555
A
HIS
180
A
HIS
181
17
1_555
A
PHE
208
A
PHE
209
17
1_555
A
ASP
267
A
ASP
268
17
1_555
A
MET
274
A
MET
275
17
1_555
A
GLY
303
A
GLY
304
17
1_555
A
GLY
304
A
GLY
305
17
1_555
A
TYR
306
A
TYR
307
17
1_555
A
ZN
403
E
ZN
17
1_555
A
HOH
665
F
HOH
17
1_555
A
HOH
1009
F
HOH
17
1_555
A
ASP
176
A
ASP
177
5
1_555
A
ASP
178
A
ASP
179
5
1_555
A
HIS
180
A
HIS
181
5
1_555
A
SER
199
A
SER
200
5
1_555
A
LEU
200
A
LEU
201
5
1_555
A
PHE
189
A
PHE
190
6
1_555
A
THR
192
A
THR
193
6
1_555
A
VAL
195
A
VAL
196
6
1_555
A
TYR
225
A
TYR
226
6
1_555
A
HOH
621
F
HOH
6
1_555
A
HOH
789
F
HOH
6
1_555
A
ASP
178
A
ASP
179
4
1_555
A
HIS
180
A
HIS
181
4
1_555
A
ASP
267
A
ASP
268
4
1_555
A
0DI
378
B
0DI
4
1_555
4
P 1 21 1