0.018080
0.000000
0.000000
0.000000
0.017615
0.000000
0.000000
0.000000
0.009033
0.00000
0.00000
0.00000
Blanchard, H.
Yu, X.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
55.310
56.770
110.700
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C6 H12 O6
180.156
beta-D-galactopyranose
beta-D-galactose; D-galactose; galactose
D-saccharide, beta linking
C6 H12 O6
180.156
alpha-D-glucopyranose
alpha-D-glucose; D-glucose; glucose
D-saccharide, alpha linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C12 H21 N O10
339.296
n
methyl 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid
methyl 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-alpha-D-galacto-non-2-ulosidonic acid; methyl 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-D-galacto-non-2-ulosidonic acid; methyl 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-galacto-non-2-ulosidonic acid
D-saccharide
C6 H14 O2
118.174
(4S)-2-METHYL-2,4-PENTANEDIOL
non-polymer
Na 1
22.990
SODIUM ION
non-polymer
C11 H19 N O10
325.269
N-glycolyl-alpha-neuraminic acid
N-glycolylneuraminic acid; sialic acid; 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid
D-saccharide, alpha linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
R
C
N
89
R
C
N
90
S
C
N
91
R
C
N
92
R
C
N
93
N
C
N
94
N
O
N
95
N
O
N
96
N
O
N
97
N
O
N
98
N
O
N
99
N
O
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
S
C
N
113
R
C
N
114
S
C
N
115
S
C
N
116
R
C
N
117
N
C
N
118
N
O
N
119
N
O
N
120
N
O
N
121
N
O
N
122
N
O
N
123
N
O
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
N
N
137
S
C
N
138
N
C
N
139
N
O
N
140
N
C
N
141
N
C
N
142
N
C
N
143
N
O
N
144
N
N
N
145
N
O
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
N
N
157
S
C
N
158
N
C
N
159
N
O
N
160
N
C
N
161
N
C
N
162
N
C
N
163
N
O
N
164
N
O
N
165
N
O
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
N
N
176
N
C
N
177
N
C
N
178
N
O
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
N
N
186
S
C
N
187
N
C
N
188
N
O
N
189
N
C
Y
190
N
C
Y
191
N
N
Y
192
N
C
Y
193
N
C
Y
194
N
N
N
195
N
O
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
O
N
207
N
H
N
208
N
H
N
209
N
N
N
210
S
C
N
211
N
C
N
212
N
O
N
213
S
C
N
214
N
C
N
215
N
C
N
216
N
C
N
217
N
O
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
O
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
N
N
254
S
C
N
255
N
C
N
256
N
O
N
257
N
C
N
258
N
C
N
259
N
C
N
260
N
C
N
261
N
N
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
N
N
279
S
C
N
280
N
C
N
281
N
O
N
282
N
C
N
283
N
C
N
284
N
S
N
285
N
C
N
286
N
O
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
C
N
299
R
C
N
300
N
O
N
301
N
C
N
302
S
C
N
303
N
O
N
304
R
C
N
305
N
N
N
306
R
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
R
C
N
311
N
O
N
312
N
C
N
313
N
O
N
314
N
C
N
315
N
O
N
316
N
C
N
317
N
O
N
318
N
C
N
319
N
O
N
320
N
O
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
C
N
343
N
C
N
344
N
O
N
345
N
C
N
346
N
C
N
347
S
C
N
348
N
O
N
349
N
C
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
NA
N
365
N
O
N
366
N
C
N
367
R
C
N
368
N
O
N
369
R
C
N
370
N
O
N
371
R
C
N
372
N
O
N
373
R
C
N
374
N
C
N
375
N
O
N
376
N
O
N
377
N
O
N
378
N
C
N
379
S
C
N
380
N
O
N
381
R
C
N
382
N
N
N
383
N
C
N
384
N
O
N
385
N
C
N
386
N
O
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
N
N
407
S
C
N
408
N
C
N
409
N
O
N
410
N
C
Y
411
N
C
Y
412
N
C
Y
413
N
C
Y
414
N
C
Y
415
N
C
Y
416
N
C
N
417
N
O
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
N
N
430
S
C
N
431
N
C
N
432
N
O
N
433
N
C
N
434
N
C
N
435
N
C
N
436
N
O
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
N
N
447
S
C
N
448
N
C
N
449
N
O
N
450
N
C
N
451
N
O
N
452
N
O
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
N
N
461
S
C
N
462
N
C
N
463
N
O
N
464
R
C
N
465
N
O
N
466
N
C
N
467
N
O
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
N
N
478
S
C
N
479
N
C
N
480
N
O
N
481
N
C
Y
482
N
C
Y
483
N
C
Y
484
N
C
Y
485
N
N
Y
486
N
C
Y
487
N
C
Y
488
N
C
Y
489
N
C
Y
490
N
C
N
491
N
O
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
N
N
505
S
C
N
506
N
C
N
507
N
O
N
508
N
C
Y
509
N
C
Y
510
N
C
Y
511
N
C
Y
512
N
C
Y
513
N
C
Y
514
N
C
N
515
N
O
N
516
N
O
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
H
N
523
N
H
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
N
N
529
S
C
N
530
N
C
N
531
N
O
N
532
N
C
N
533
N
C
N
534
N
C
N
535
N
O
N
536
N
H
N
537
N
H
N
538
N
H
N
539
N
H
N
540
N
H
N
541
N
H
N
542
N
H
N
543
N
H
N
544
N
H
N
545
N
H
N
546
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
doub
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
Y
188
N
sing
Y
189
N
doub
Y
190
N
doub
N
191
N
sing
Y
192
N
sing
N
193
N
sing
Y
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
doub
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
doub
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
doub
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
doub
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
doub
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
doub
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
Y
402
N
doub
Y
403
N
sing
Y
404
N
sing
N
405
N
sing
Y
406
N
doub
N
407
N
sing
Y
408
N
doub
N
409
N
sing
Y
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
doub
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
doub
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
doub
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
doub
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
Y
471
N
doub
Y
472
N
sing
Y
473
N
sing
N
474
N
sing
Y
475
N
doub
Y
476
N
sing
Y
477
N
sing
N
478
N
sing
Y
479
N
sing
Y
480
N
doub
N
481
N
sing
Y
482
N
doub
N
483
N
sing
Y
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
doub
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
Y
499
N
doub
Y
500
N
sing
Y
501
N
sing
N
502
N
sing
Y
503
N
doub
N
504
N
sing
Y
505
N
doub
N
506
N
sing
Y
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
doub
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
413
929
939
10.1016/j.jmb.2011.09.005
21945555
Novel structural insights into rotavirus recognition of ganglioside glycan receptors.
2011
10.2210/pdb3sis/pdb
pdb_00003sis
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2010-07-23
ADSC QUANTUM 210r
SINGLE WAVELENGTH
x-ray
1
0.9537
1.0
MX1
Australian Synchrotron
0.9537
SYNCHROTRON
AUSTRALIAN SYNCHROTRON BEAMLINE MX1
18459.516
Outer capsid protein VP4
Outer capsid protein VP8* (UNP residues 64-224)
yes
2
man
polymer
649.551
N-glycolyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose
1
man
branched
339.296
methyl 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid
1
man
non-polymer
22.990
SODIUM ION
2
syn
non-polymer
118.174
(4S)-2-METHYL-2,4-PENTANEDIOL
1
syn
non-polymer
18.015
water
141
nat
water
VP8* carbohydrate recognition protein
no
no
GSLLDGPYQPTTFNPPTSYWILLAPTVEGVVIQGTNNIDRWLATILIEPNVQTTNRIYNLFGQQVTLSVENTSQTQWKFI
DVSKTTPTGNYTQHGPLFSTPKLYAVMKFSGRIYTYNGTTPNATTGYYSTTNYDTVNMTSFCDFYIIPRNQEEKCTEYIN
HGL
GSLLDGPYQPTTFNPPTSYWILLAPTVEGVVIQGTNNIDRWLATILIEPNVQTTNRIYNLFGQQVTLSVENTSQTQWKFI
DVSKTTPTGNYTQHGPLFSTPKLYAVMKFSGRIYTYNGTTPNATTGYYSTTNYDTVNMTSFCDFYIIPRNQEEKCTEYIN
HGL
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
RV-A
CRW-8
sample
31578
Porcine rotavirus
469008
Escherichia coli
BL21(DE3)
plasmid
p-GEX
1
2.35
47.74
VAPOR DIFFUSION, HANGING DROP
7.5
15-20 mg/mL protein, 65-75% MPD, 0.1 M HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
atom_site
chem_comp
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
pdbx_struct_conn_angle
pdbx_unobs_or_zero_occ_atoms
struct_asym
struct_conn
struct_ref_seq_dif
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Carbohydrate remediation
repository
Remediation
Database references
Database references
Advisory
Atomic model
Data collection
Database references
Derived calculations
Non-polymer description
Structure summary
Data collection
Database references
Refinement description
Structure summary
1
0
2011-09-28
1
1
2011-10-12
1
2
2011-11-30
2
0
2020-07-29
2
1
2023-09-13
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.type_symbol
_chem_comp.formula
_chem_comp.formula_weight
_chem_comp.id
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.type
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
B
GLC
6537
n
C
GLC
1
B
GAL
6536
n
C
GAL
2
B
MN0
6535
n
C
NGC
3
DGalpb
b-D-galactopyranose
b-D-Galp
Gal
DGlcpa
a-D-glucopyranose
a-D-Glcp
Glc
2-O-methyl-5-N-glycolyl-a-D-neuraminic acid
DNeup5Gca
N-glycolyl-a-D-neuraminic acid
a-D-Neup5Gc
Neu5Gc
Rotavirus CRW-8 VP8* in complex with monosaccharide aMeNeu5Ac
Porcine CRW-8 Rotavirus VP8* in complex with aceramido-GM3
RCSB
Y
RCSB
2011-06-20
REL
REL
oligosaccharide
DNeup5Gca2-3DGalpb1-4DGlcpa1-ROH
2
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/3,3,2/[a2122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCCO/3=O]/1-2-3/a4-b1_b3-c2
2
PDB2Glycan
1.1.0
WURCS
[][a-D-Glcp]{[(4+1)][b-D-Galp]{[(3+2)][a-D-Neup5Gc]{}}}
2
PDB-CARE
LINUCS
C1
O4
GAL
GLC
2
1
2
O1
HO4
sing
C2
O3
NGC
GAL
3
2
2
O2
HO3
sing
n
n
n
MN0
methyl 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid
NA
SODIUM ION
MPD
(4S)-2-METHYL-2,4-PENTANEDIOL
HOH
water
2I2S
PDB ENTRY 2I2S
PDB
experimental model
MN0
6535
3
MN0
MN0
6535
A
NA
3000
4
NA
NA
3000
A
NA
3001
4
NA
NA
3001
B
MPD
4210
5
MPD
MPD
4210
B
HOH
2
6
HOH
HOH
2
A
HOH
4
6
HOH
HOH
4
A
HOH
5
6
HOH
HOH
5
A
HOH
7
6
HOH
HOH
7
A
HOH
8
6
HOH
HOH
8
A
HOH
11
6
HOH
HOH
11
A
HOH
12
6
HOH
HOH
12
A
HOH
13
6
HOH
HOH
13
A
HOH
15
6
HOH
HOH
15
A
HOH
16
6
HOH
HOH
16
A
HOH
17
6
HOH
HOH
17
A
HOH
21
6
HOH
HOH
21
A
HOH
22
6
HOH
HOH
22
A
HOH
24
6
HOH
HOH
24
A
HOH
28
6
HOH
HOH
28
A
HOH
30
6
HOH
HOH
30
A
HOH
35
6
HOH
HOH
35
A
HOH
37
6
HOH
HOH
37
A
HOH
40
6
HOH
HOH
40
A
HOH
42
6
HOH
HOH
42
A
HOH
43
6
HOH
HOH
43
A
HOH
44
6
HOH
HOH
44
A
HOH
45
6
HOH
HOH
45
A
HOH
48
6
HOH
HOH
48
A
HOH
51
6
HOH
HOH
51
A
HOH
57
6
HOH
HOH
57
A
HOH
61
6
HOH
HOH
61
A
HOH
225
6
HOH
HOH
225
A
HOH
226
6
HOH
HOH
226
A
HOH
227
6
HOH
HOH
227
A
HOH
228
6
HOH
HOH
228
A
HOH
229
6
HOH
HOH
229
A
HOH
230
6
HOH
HOH
230
A
HOH
231
6
HOH
HOH
231
A
HOH
232
6
HOH
HOH
232
A
HOH
233
6
HOH
HOH
233
A
HOH
234
6
HOH
HOH
234
A
HOH
235
6
HOH
HOH
235
A
HOH
236
6
HOH
HOH
236
A
HOH
237
6
HOH
HOH
237
A
HOH
238
6
HOH
HOH
238
A
HOH
239
6
HOH
HOH
239
A
HOH
240
6
HOH
HOH
240
A
HOH
241
6
HOH
HOH
241
A
HOH
242
6
HOH
HOH
242
A
HOH
243
6
HOH
HOH
243
A
HOH
244
6
HOH
HOH
244
A
HOH
245
6
HOH
HOH
245
A
HOH
246
6
HOH
HOH
246
A
HOH
247
6
HOH
HOH
247
A
HOH
248
6
HOH
HOH
248
A
HOH
249
6
HOH
HOH
249
A
HOH
250
6
HOH
HOH
250
A
HOH
251
6
HOH
HOH
251
A
HOH
252
6
HOH
HOH
252
A
HOH
253
6
HOH
HOH
253
A
HOH
254
6
HOH
HOH
254
A
HOH
255
6
HOH
HOH
255
A
HOH
256
6
HOH
HOH
256
A
HOH
257
6
HOH
HOH
257
A
HOH
258
6
HOH
HOH
258
A
HOH
259
6
HOH
HOH
259
A
HOH
260
6
HOH
HOH
260
A
HOH
261
6
HOH
HOH
261
A
HOH
262
6
HOH
HOH
262
A
HOH
263
6
HOH
HOH
263
A
HOH
264
6
HOH
HOH
264
A
HOH
265
6
HOH
HOH
265
A
HOH
266
6
HOH
HOH
266
A
HOH
267
6
HOH
HOH
267
A
HOH
268
6
HOH
HOH
268
A
HOH
269
6
HOH
HOH
269
A
HOH
270
6
HOH
HOH
270
A
HOH
271
6
HOH
HOH
271
A
HOH
272
6
HOH
HOH
272
A
HOH
273
6
HOH
HOH
273
A
HOH
274
6
HOH
HOH
274
A
HOH
1
6
HOH
HOH
1
B
HOH
6
6
HOH
HOH
6
B
HOH
10
6
HOH
HOH
10
B
HOH
14
6
HOH
HOH
14
B
HOH
18
6
HOH
HOH
18
B
HOH
19
6
HOH
HOH
19
B
HOH
20
6
HOH
HOH
20
B
HOH
23
6
HOH
HOH
23
B
HOH
26
6
HOH
HOH
26
B
HOH
27
6
HOH
HOH
27
B
HOH
29
6
HOH
HOH
29
B
HOH
32
6
HOH
HOH
32
B
HOH
33
6
HOH
HOH
33
B
HOH
34
6
HOH
HOH
34
B
HOH
36
6
HOH
HOH
36
B
HOH
38
6
HOH
HOH
38
B
HOH
41
6
HOH
HOH
41
B
HOH
46
6
HOH
HOH
46
B
HOH
47
6
HOH
HOH
47
B
HOH
49
6
HOH
HOH
49
B
HOH
50
6
HOH
HOH
50
B
HOH
52
6
HOH
HOH
52
B
HOH
55
6
HOH
HOH
55
B
HOH
56
6
HOH
HOH
56
B
HOH
58
6
HOH
HOH
58
B
HOH
59
6
HOH
HOH
59
B
HOH
225
6
HOH
HOH
225
B
HOH
226
6
HOH
HOH
226
B
HOH
227
6
HOH
HOH
227
B
HOH
228
6
HOH
HOH
228
B
HOH
229
6
HOH
HOH
229
B
HOH
230
6
HOH
HOH
230
B
HOH
231
6
HOH
HOH
231
B
HOH
232
6
HOH
HOH
232
B
HOH
233
6
HOH
HOH
233
B
HOH
234
6
HOH
HOH
234
B
HOH
235
6
HOH
HOH
235
B
HOH
236
6
HOH
HOH
236
B
HOH
237
6
HOH
HOH
237
B
HOH
238
6
HOH
HOH
238
B
HOH
239
6
HOH
HOH
239
B
HOH
240
6
HOH
HOH
240
B
HOH
241
6
HOH
HOH
241
B
HOH
242
6
HOH
HOH
242
B
HOH
243
6
HOH
HOH
243
B
HOH
244
6
HOH
HOH
244
B
HOH
245
6
HOH
HOH
245
B
HOH
246
6
HOH
HOH
246
B
HOH
247
6
HOH
HOH
247
B
HOH
248
6
HOH
HOH
248
B
HOH
249
6
HOH
HOH
249
B
HOH
250
6
HOH
HOH
250
B
HOH
251
6
HOH
HOH
251
B
HOH
252
6
HOH
HOH
252
B
HOH
253
6
HOH
HOH
253
B
HOH
254
6
HOH
HOH
254
B
HOH
255
6
HOH
HOH
255
B
HOH
256
6
HOH
HOH
256
B
HOH
257
6
HOH
HOH
257
B
HOH
258
6
HOH
HOH
258
B
HOH
259
6
HOH
HOH
259
B
HOH
260
6
HOH
HOH
260
B
HOH
261
6
HOH
HOH
261
B
HOH
262
6
HOH
HOH
262
B
GLY
62
n
1
GLY
62
A
SER
63
n
2
SER
63
A
LEU
64
n
3
LEU
64
A
LEU
65
n
4
LEU
65
A
ASP
66
n
5
ASP
66
A
GLY
67
n
6
GLY
67
A
PRO
68
n
7
PRO
68
A
TYR
69
n
8
TYR
69
A
GLN
70
n
9
GLN
70
A
PRO
71
n
10
PRO
71
A
THR
72
n
11
THR
72
A
THR
73
n
12
THR
73
A
PHE
74
n
13
PHE
74
A
ASN
75
n
14
ASN
75
A
PRO
76
n
15
PRO
76
A
PRO
77
n
16
PRO
77
A
THR
78
n
17
THR
78
A
SER
79
n
18
SER
79
A
TYR
80
n
19
TYR
80
A
TRP
81
n
20
TRP
81
A
ILE
82
n
21
ILE
82
A
LEU
83
n
22
LEU
83
A
LEU
84
n
23
LEU
84
A
ALA
85
n
24
ALA
85
A
PRO
86
n
25
PRO
86
A
THR
87
n
26
THR
87
A
VAL
88
n
27
VAL
88
A
GLU
89
n
28
GLU
89
A
GLY
90
n
29
GLY
90
A
VAL
91
n
30
VAL
91
A
VAL
92
n
31
VAL
92
A
ILE
93
n
32
ILE
93
A
GLN
94
n
33
GLN
94
A
GLY
95
n
34
GLY
95
A
THR
96
n
35
THR
96
A
ASN
97
n
36
ASN
97
A
ASN
98
n
37
ASN
98
A
ILE
99
n
38
ILE
99
A
ASP
100
n
39
ASP
100
A
ARG
101
n
40
ARG
101
A
TRP
102
n
41
TRP
102
A
LEU
103
n
42
LEU
103
A
ALA
104
n
43
ALA
104
A
THR
105
n
44
THR
105
A
ILE
106
n
45
ILE
106
A
LEU
107
n
46
LEU
107
A
ILE
108
n
47
ILE
108
A
GLU
109
n
48
GLU
109
A
PRO
110
n
49
PRO
110
A
ASN
111
n
50
ASN
111
A
VAL
112
n
51
VAL
112
A
GLN
113
n
52
GLN
113
A
THR
114
n
53
THR
114
A
THR
115
n
54
THR
115
A
ASN
116
n
55
ASN
116
A
ARG
117
n
56
ARG
117
A
ILE
118
n
57
ILE
118
A
TYR
119
n
58
TYR
119
A
ASN
120
n
59
ASN
120
A
LEU
121
n
60
LEU
121
A
PHE
122
n
61
PHE
122
A
GLY
123
n
62
GLY
123
A
GLN
124
n
63
GLN
124
A
GLN
125
n
64
GLN
125
A
VAL
126
n
65
VAL
126
A
THR
127
n
66
THR
127
A
LEU
128
n
67
LEU
128
A
SER
129
n
68
SER
129
A
VAL
130
n
69
VAL
130
A
GLU
131
n
70
GLU
131
A
ASN
132
n
71
ASN
132
A
THR
133
n
72
THR
133
A
SER
134
n
73
SER
134
A
GLN
135
n
74
GLN
135
A
THR
136
n
75
THR
136
A
GLN
137
n
76
GLN
137
A
TRP
138
n
77
TRP
138
A
LYS
139
n
78
LYS
139
A
PHE
140
n
79
PHE
140
A
ILE
141
n
80
ILE
141
A
ASP
142
n
81
ASP
142
A
VAL
143
n
82
VAL
143
A
SER
144
n
83
SER
144
A
LYS
145
n
84
LYS
145
A
THR
146
n
85
THR
146
A
THR
147
n
86
THR
147
A
PRO
148
n
87
PRO
148
A
THR
149
n
88
THR
149
A
GLY
150
n
89
GLY
150
A
ASN
151
n
90
ASN
151
A
TYR
152
n
91
TYR
152
A
THR
153
n
92
THR
153
A
GLN
154
n
93
GLN
154
A
HIS
155
n
94
HIS
155
A
GLY
156
n
95
GLY
156
A
PRO
157
n
96
PRO
157
A
LEU
158
n
97
LEU
158
A
PHE
159
n
98
PHE
159
A
SER
160
n
99
SER
160
A
THR
161
n
100
THR
161
A
PRO
162
n
101
PRO
162
A
LYS
163
n
102
LYS
163
A
LEU
164
n
103
LEU
164
A
TYR
165
n
104
TYR
165
A
ALA
166
n
105
ALA
166
A
VAL
167
n
106
VAL
167
A
MET
168
n
107
MET
168
A
LYS
169
n
108
LYS
169
A
PHE
170
n
109
PHE
170
A
SER
171
n
110
SER
171
A
GLY
172
n
111
GLY
172
A
ARG
173
n
112
ARG
173
A
ILE
174
n
113
ILE
174
A
TYR
175
n
114
TYR
175
A
THR
176
n
115
THR
176
A
TYR
177
n
116
TYR
177
A
ASN
178
n
117
ASN
178
A
GLY
179
n
118
GLY
179
A
THR
180
n
119
THR
180
A
THR
181
n
120
THR
181
A
PRO
182
n
121
PRO
182
A
ASN
183
n
122
ASN
183
A
ALA
184
n
123
ALA
184
A
THR
185
n
124
THR
185
A
THR
186
n
125
THR
186
A
GLY
187
n
126
GLY
187
A
TYR
188
n
127
TYR
188
A
TYR
189
n
128
TYR
189
A
SER
190
n
129
SER
190
A
THR
191
n
130
THR
191
A
THR
192
n
131
THR
192
A
ASN
193
n
132
ASN
193
A
TYR
194
n
133
TYR
194
A
ASP
195
n
134
ASP
195
A
THR
196
n
135
THR
196
A
VAL
197
n
136
VAL
197
A
ASN
198
n
137
ASN
198
A
MET
199
n
138
MET
199
A
THR
200
n
139
THR
200
A
SER
201
n
140
SER
201
A
PHE
202
n
141
PHE
202
A
CYS
203
n
142
CYS
203
A
ASP
204
n
143
ASP
204
A
PHE
205
n
144
PHE
205
A
TYR
206
n
145
TYR
206
A
ILE
207
n
146
ILE
207
A
ILE
208
n
147
ILE
208
A
PRO
209
n
148
PRO
209
A
ARG
210
n
149
ARG
210
A
ASN
211
n
150
ASN
211
A
GLN
212
n
151
GLN
212
A
GLU
213
n
152
GLU
213
A
GLU
214
n
153
GLU
214
A
LYS
215
n
154
LYS
215
A
CYS
216
n
155
CYS
216
A
THR
217
n
156
THR
217
A
GLU
218
n
157
GLU
218
A
TYR
219
n
158
TYR
219
A
ILE
220
n
159
ILE
220
A
ASN
221
n
160
ASN
221
A
HIS
222
n
161
HIS
222
A
GLY
223
n
162
GLY
223
A
LEU
224
n
163
LEU
224
A
n
1
62
B
n
2
63
B
n
3
64
B
n
4
65
B
ASP
66
n
5
ASP
66
B
GLY
67
n
6
GLY
67
B
PRO
68
n
7
PRO
68
B
TYR
69
n
8
TYR
69
B
GLN
70
n
9
GLN
70
B
PRO
71
n
10
PRO
71
B
THR
72
n
11
THR
72
B
THR
73
n
12
THR
73
B
PHE
74
n
13
PHE
74
B
ASN
75
n
14
ASN
75
B
PRO
76
n
15
PRO
76
B
PRO
77
n
16
PRO
77
B
THR
78
n
17
THR
78
B
SER
79
n
18
SER
79
B
TYR
80
n
19
TYR
80
B
TRP
81
n
20
TRP
81
B
ILE
82
n
21
ILE
82
B
LEU
83
n
22
LEU
83
B
LEU
84
n
23
LEU
84
B
ALA
85
n
24
ALA
85
B
PRO
86
n
25
PRO
86
B
THR
87
n
26
THR
87
B
VAL
88
n
27
VAL
88
B
GLU
89
n
28
GLU
89
B
GLY
90
n
29
GLY
90
B
VAL
91
n
30
VAL
91
B
VAL
92
n
31
VAL
92
B
ILE
93
n
32
ILE
93
B
GLN
94
n
33
GLN
94
B
GLY
95
n
34
GLY
95
B
THR
96
n
35
THR
96
B
ASN
97
n
36
ASN
97
B
ASN
98
n
37
ASN
98
B
ILE
99
n
38
ILE
99
B
ASP
100
n
39
ASP
100
B
ARG
101
n
40
ARG
101
B
TRP
102
n
41
TRP
102
B
LEU
103
n
42
LEU
103
B
ALA
104
n
43
ALA
104
B
THR
105
n
44
THR
105
B
ILE
106
n
45
ILE
106
B
LEU
107
n
46
LEU
107
B
ILE
108
n
47
ILE
108
B
GLU
109
n
48
GLU
109
B
PRO
110
n
49
PRO
110
B
ASN
111
n
50
ASN
111
B
VAL
112
n
51
VAL
112
B
GLN
113
n
52
GLN
113
B
THR
114
n
53
THR
114
B
THR
115
n
54
THR
115
B
ASN
116
n
55
ASN
116
B
ARG
117
n
56
ARG
117
B
ILE
118
n
57
ILE
118
B
TYR
119
n
58
TYR
119
B
ASN
120
n
59
ASN
120
B
LEU
121
n
60
LEU
121
B
PHE
122
n
61
PHE
122
B
GLY
123
n
62
GLY
123
B
GLN
124
n
63
GLN
124
B
GLN
125
n
64
GLN
125
B
VAL
126
n
65
VAL
126
B
THR
127
n
66
THR
127
B
LEU
128
n
67
LEU
128
B
SER
129
n
68
SER
129
B
VAL
130
n
69
VAL
130
B
GLU
131
n
70
GLU
131
B
ASN
132
n
71
ASN
132
B
THR
133
n
72
THR
133
B
SER
134
n
73
SER
134
B
GLN
135
n
74
GLN
135
B
THR
136
n
75
THR
136
B
GLN
137
n
76
GLN
137
B
TRP
138
n
77
TRP
138
B
LYS
139
n
78
LYS
139
B
PHE
140
n
79
PHE
140
B
ILE
141
n
80
ILE
141
B
ASP
142
n
81
ASP
142
B
VAL
143
n
82
VAL
143
B
SER
144
n
83
SER
144
B
LYS
145
n
84
LYS
145
B
THR
146
n
85
THR
146
B
THR
147
n
86
THR
147
B
PRO
148
n
87
PRO
148
B
THR
149
n
88
THR
149
B
GLY
150
n
89
GLY
150
B
ASN
151
n
90
ASN
151
B
TYR
152
n
91
TYR
152
B
THR
153
n
92
THR
153
B
GLN
154
n
93
GLN
154
B
HIS
155
n
94
HIS
155
B
GLY
156
n
95
GLY
156
B
PRO
157
n
96
PRO
157
B
LEU
158
n
97
LEU
158
B
PHE
159
n
98
PHE
159
B
SER
160
n
99
SER
160
B
THR
161
n
100
THR
161
B
PRO
162
n
101
PRO
162
B
LYS
163
n
102
LYS
163
B
LEU
164
n
103
LEU
164
B
TYR
165
n
104
TYR
165
B
ALA
166
n
105
ALA
166
B
VAL
167
n
106
VAL
167
B
MET
168
n
107
MET
168
B
LYS
169
n
108
LYS
169
B
PHE
170
n
109
PHE
170
B
SER
171
n
110
SER
171
B
GLY
172
n
111
GLY
172
B
ARG
173
n
112
ARG
173
B
ILE
174
n
113
ILE
174
B
TYR
175
n
114
TYR
175
B
THR
176
n
115
THR
176
B
TYR
177
n
116
TYR
177
B
ASN
178
n
117
ASN
178
B
GLY
179
n
118
GLY
179
B
THR
180
n
119
THR
180
B
THR
181
n
120
THR
181
B
PRO
182
n
121
PRO
182
B
ASN
183
n
122
ASN
183
B
ALA
184
n
123
ALA
184
B
THR
185
n
124
THR
185
B
THR
186
n
125
THR
186
B
GLY
187
n
126
GLY
187
B
TYR
188
n
127
TYR
188
B
TYR
189
n
128
TYR
189
B
SER
190
n
129
SER
190
B
THR
191
n
130
THR
191
B
THR
192
n
131
THR
192
B
ASN
193
n
132
ASN
193
B
TYR
194
n
133
TYR
194
B
ASP
195
n
134
ASP
195
B
THR
196
n
135
THR
196
B
VAL
197
n
136
VAL
197
B
ASN
198
n
137
ASN
198
B
MET
199
n
138
MET
199
B
THR
200
n
139
THR
200
B
SER
201
n
140
SER
201
B
PHE
202
n
141
PHE
202
B
CYS
203
n
142
CYS
203
B
ASP
204
n
143
ASP
204
B
PHE
205
n
144
PHE
205
B
TYR
206
n
145
TYR
206
B
ILE
207
n
146
ILE
207
B
ILE
208
n
147
ILE
208
B
PRO
209
n
148
PRO
209
B
ARG
210
n
149
ARG
210
B
ASN
211
n
150
ASN
211
B
GLN
212
n
151
GLN
212
B
GLU
213
n
152
GLU
213
B
GLU
214
n
153
GLU
214
B
LYS
215
n
154
LYS
215
B
CYS
216
n
155
CYS
216
B
THR
217
n
156
THR
217
B
GLU
218
n
157
GLU
218
B
TYR
219
n
158
TYR
219
B
ILE
220
n
159
ILE
220
B
ASN
221
n
160
ASN
221
B
HIS
222
n
161
HIS
222
B
GLY
223
n
162
GLY
223
B
LEU
224
n
163
LEU
224
B
author_and_software_defined_assembly
PISA
1
monomeric
author_and_software_defined_assembly
PISA
1
monomeric
A
ASP
142
A
OD2
ASP
81
1_555
A
NA
3000
E
NA
NA
1_555
A
GLY
156
A
O
GLY
95
1_555
97.4
A
ASP
142
A
OD2
ASP
81
1_555
A
NA
3000
E
NA
NA
1_555
A
TYR
165
A
OH
TYR
104
1_555
73.5
A
GLY
156
A
O
GLY
95
1_555
A
NA
3000
E
NA
NA
1_555
A
TYR
165
A
OH
TYR
104
1_555
120.4
A
ASP
142
A
OD2
ASP
81
1_555
A
NA
3000
E
NA
NA
1_555
A
THR
176
A
OG1
THR
115
1_555
60.8
A
GLY
156
A
O
GLY
95
1_555
A
NA
3000
E
NA
NA
1_555
A
THR
176
A
OG1
THR
115
1_555
150.3
A
TYR
165
A
OH
TYR
104
1_555
A
NA
3000
E
NA
NA
1_555
A
THR
176
A
OG1
THR
115
1_555
75.1
A
ASP
142
A
OD2
ASP
81
1_555
A
NA
3000
E
NA
NA
1_555
A
TYR
177
A
O
TYR
116
1_555
152.6
A
GLY
156
A
O
GLY
95
1_555
A
NA
3000
E
NA
NA
1_555
A
TYR
177
A
O
TYR
116
1_555
109.5
A
TYR
165
A
OH
TYR
104
1_555
A
NA
3000
E
NA
NA
1_555
A
TYR
177
A
O
TYR
116
1_555
88.4
A
THR
176
A
OG1
THR
115
1_555
A
NA
3000
E
NA
NA
1_555
A
TYR
177
A
O
TYR
116
1_555
95.2
B
ASP
142
B
OD2
ASP
81
1_555
B
NA
3001
F
NA
NA
1_555
B
GLY
156
B
O
GLY
95
1_555
92.8
B
ASP
142
B
OD2
ASP
81
1_555
B
NA
3001
F
NA
NA
1_555
B
TYR
165
B
OH
TYR
104
1_555
71.8
B
GLY
156
B
O
GLY
95
1_555
B
NA
3001
F
NA
NA
1_555
B
TYR
165
B
OH
TYR
104
1_555
118.2
B
ASP
142
B
OD2
ASP
81
1_555
B
NA
3001
F
NA
NA
1_555
B
THR
176
B
OG1
THR
115
1_555
60.9
B
GLY
156
B
O
GLY
95
1_555
B
NA
3001
F
NA
NA
1_555
B
THR
176
B
OG1
THR
115
1_555
148.3
B
TYR
165
B
OH
TYR
104
1_555
B
NA
3001
F
NA
NA
1_555
B
THR
176
B
OG1
THR
115
1_555
72.7
B
ASP
142
B
OD2
ASP
81
1_555
B
NA
3001
F
NA
NA
1_555
B
TYR
177
B
O
TYR
116
1_555
154.8
B
GLY
156
B
O
GLY
95
1_555
B
NA
3001
F
NA
NA
1_555
B
TYR
177
B
O
TYR
116
1_555
112.0
B
TYR
165
B
OH
TYR
104
1_555
B
NA
3001
F
NA
NA
1_555
B
TYR
177
B
O
TYR
116
1_555
91.5
B
THR
176
B
OG1
THR
115
1_555
B
NA
3001
F
NA
NA
1_555
B
TYR
177
B
O
TYR
116
1_555
96.6
B
ASP
142
B
OD2
ASP
81
1_555
B
NA
3001
F
NA
NA
1_555
B
ASN
178
B
B
OD1
ASN
117
1_555
113.6
B
GLY
156
B
O
GLY
95
1_555
B
NA
3001
F
NA
NA
1_555
B
ASN
178
B
B
OD1
ASN
117
1_555
88.8
B
TYR
165
B
OH
TYR
104
1_555
B
NA
3001
F
NA
NA
1_555
B
ASN
178
B
B
OD1
ASN
117
1_555
152.7
B
THR
176
B
OG1
THR
115
1_555
B
NA
3001
F
NA
NA
1_555
B
ASN
178
B
B
OD1
ASN
117
1_555
86.5
B
TYR
177
B
O
TYR
116
1_555
B
NA
3001
F
NA
NA
1_555
B
ASN
178
B
B
OD1
ASN
117
1_555
73.2
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
69
A
N
TYR
8
A
O
PHE
205
A
O
PHE
144
A
O
ILE
208
A
O
ILE
147
A
N
TRP
81
A
N
TRP
20
A
N
LEU
84
A
N
LEU
23
A
O
TYR
165
A
O
TYR
104
A
N
MET
168
A
N
MET
107
A
O
TYR
175
A
O
TYR
114
A
O
GLY
179
A
O
GLY
118
A
N
PRO
157
A
N
PRO
96
A
O
SER
160
A
O
SER
99
A
N
TRP
138
A
N
TRP
77
A
O
LYS
139
A
O
LYS
78
A
N
ILE
108
A
N
ILE
47
A
O
THR
105
A
O
THR
44
A
N
VAL
92
A
N
VAL
31
A
N
GLN
94
A
N
GLN
33
A
O
THR
200
A
O
THR
139
A
O
MET
199
A
O
MET
138
A
N
PHE
74
A
N
PHE
13
A
N
TYR
69
A
N
TYR
8
A
O
PHE
205
A
O
PHE
144
A
O
ILE
208
A
O
ILE
147
A
N
TRP
81
A
N
TRP
20
A
N
LEU
84
A
N
LEU
23
A
O
TYR
165
A
O
TYR
104
A
N
MET
168
A
N
MET
107
A
O
TYR
175
A
O
TYR
114
A
N
ASN
178
A
N
ASN
117
A
O
THR
185
A
O
THR
124
A
N
TYR
119
A
N
TYR
58
A
O
VAL
126
A
O
VAL
65
B
N
PHE
74
B
N
PHE
13
B
O
MET
199
B
O
MET
138
B
O
THR
200
B
O
THR
139
B
N
GLN
94
B
N
GLN
33
B
N
VAL
92
B
N
VAL
31
B
O
THR
105
B
O
THR
44
B
N
ALA
104
B
N
ALA
43
B
O
VAL
143
B
O
VAL
82
B
N
TRP
138
B
N
TRP
77
B
O
SER
160
B
O
SER
99
B
N
PHE
159
B
N
PHE
98
B
O
GLY
179
B
O
GLY
118
B
N
ASN
178
B
N
ASN
117
B
O
THR
185
B
O
THR
124
B
N
PHE
74
B
N
PHE
13
B
O
MET
199
B
O
MET
138
B
O
THR
200
B
O
THR
139
B
N
GLN
94
B
N
GLN
33
B
N
VAL
92
B
N
VAL
31
B
O
THR
105
B
O
THR
44
B
N
ALA
104
B
N
ALA
43
B
O
VAL
143
B
O
VAL
82
B
N
TRP
138
B
N
TRP
77
B
O
SER
160
B
O
SER
99
B
N
PHE
159
B
N
PHE
98
B
O
GLY
179
B
O
GLY
118
B
O
TYR
175
B
O
TYR
114
B
N
MET
168
B
N
MET
107
B
O
TYR
165
B
O
TYR
104
B
N
LEU
84
B
N
LEU
23
B
N
TRP
81
B
N
TRP
20
B
O
ILE
208
B
O
ILE
147
B
N
VAL
112
B
N
VAL
51
B
O
ASN
132
B
O
ASN
71
1
B
GLY
62
B
GLY
1
1
Y
1
B
SER
63
B
SER
2
1
Y
1
B
LEU
64
B
LEU
3
1
Y
1
B
LEU
65
B
LEU
4
1
Y
1
A
A
O
O
HOH
HOH
13
243
2.17
1
B
B
OE2
OH
GLU
TYR
131
194
2.15
1_555
3_555
1
A
ILE
99
-128.82
-57.96
1
A
ASP
100
-152.59
15.26
1
A
THR
114
-38.26
124.88
1
A
ASN
183
-119.29
51.33
1
A
ASN
211
-57.45
-8.61
1
B
ILE
99
-134.04
-66.00
1
B
ASP
100
-149.49
20.62
1
B
ASN
111
63.62
64.59
1
B
PHE
122
64.89
-84.47
28.401
0.00
0.00
0.00
0.00
0.00
0.01
0.946
0.924
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
U VALUES : REFINED INDIVIDUALLY
0.23837
0.19297
0.20
0.19522
2.20
39.12
929
18082
17106
5.2
98.42
5.926
0.151
RANDOM
1
THROUGHOUT
2.0
MOLECULAR REPLACEMENT
0.303
0.218
0.80
0.80
1.40
PDB ENTRY 2I2S
MAXIMUM LIKELIHOOD
MASK
2.20
39.12
141
2800
77
0
2582
0.008
0.022
2756
1.162
1.977
3797
6.000
5.000
326
32.445
24.921
126
13.558
15.000
400
11.157
15.000
8
0.071
0.200
441
0.005
0.021
2102
0.468
1.500
1620
0.869
2.000
2680
1.096
3.000
1136
1.862
4.500
1114
0.345
0.258
2.257
72
1097
20
87.96
2.2
39.62
3SIS
18082
2.0
2.0
0.054
1
10.1
11.72
98.5
0.258
2.2
2.32
1.5
1
3.77
91.8
data collection
Blu-Ice
phasing
AMoRE
refinement
REFMAC
5.5.0110
data reduction
MOSFLM
data scaling
SCALA
Crystal structure of Porcine CRW-8 Rotavirus VP8* in complex with aceramido-GM3_Gc
1
N
N
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
5
N
N
6
N
N
6
N
N
A
ASN
193
A
ASN
132
HELX_P
A
VAL
197
A
VAL
136
5
1
5
A
GLN
212
A
GLN
151
HELX_P
A
GLY
223
A
GLY
162
1
2
12
B
ASN
193
B
ASN
132
HELX_P
B
VAL
197
B
VAL
136
5
3
5
B
GLN
212
B
GLN
151
HELX_P
B
GLY
223
B
GLY
162
1
4
12
covale
1.451
both
C
GLC
1
C
O4
GLC
1_555
C
GAL
2
C
C1
GAL
1_555
covale
1.447
both
C
GAL
2
C
O3
GAL
1_555
C
NGC
3
C
C2
NGC
1_555
metalc
2.655
A
ASP
142
A
OD2
ASP
81
1_555
A
NA
3000
E
NA
NA
1_555
metalc
2.255
A
GLY
156
A
O
GLY
95
1_555
A
NA
3000
E
NA
NA
1_555
metalc
2.421
A
TYR
165
A
OH
TYR
104
1_555
A
NA
3000
E
NA
NA
1_555
metalc
2.607
A
THR
176
A
OG1
THR
115
1_555
A
NA
3000
E
NA
NA
1_555
metalc
2.342
A
TYR
177
A
O
TYR
116
1_555
A
NA
3000
E
NA
NA
1_555
metalc
2.526
B
ASP
142
B
OD2
ASP
81
1_555
B
NA
3001
F
NA
NA
1_555
metalc
2.263
B
GLY
156
B
O
GLY
95
1_555
B
NA
3001
F
NA
NA
1_555
metalc
2.345
B
TYR
165
B
OH
TYR
104
1_555
B
NA
3001
F
NA
NA
1_555
metalc
2.728
B
THR
176
B
OG1
THR
115
1_555
B
NA
3001
F
NA
NA
1_555
metalc
2.262
B
TYR
177
B
O
TYR
116
1_555
B
NA
3001
F
NA
NA
1_555
metalc
2.412
B
B
ASN
178
B
OD1
ASN
117
1_555
B
NA
3001
F
NA
NA
1_555
SUGAR BINDING PROTEIN, VIRAL PROTEIN
beta sandwich, lectin, GM3, SUGAR BINDING PROTEIN, VIRAL PROTEIN
A
GLY
67
A
GLY
6
1
A
PRO
68
A
PRO
7
4.57
A
THR
181
A
THR
120
1
A
PRO
182
A
PRO
121
7.77
B
GLY
67
B
GLY
6
1
B
PRO
68
B
PRO
7
4.75
B
THR
181
B
THR
120
1
B
PRO
182
B
PRO
121
4.51
VP4_ROTP3
UNP
1
64
P0C6Y8
LLDGPYRPTTFNPPTSYWVLLAPTVEGVVIQGTNNIDRWLATILIEPNVQTTNRIYNLFGQQVTLSVENTSQTQWKFIDV
SKTTPTGSYTQHGPLFSTPKLYAVMKFSGRIYTYNGTTPNATTGYYSTTNYDTVNMTLFCDFYIIPRNQEEKCTEYINHG
L
64
224
3SIS
64
224
P0C6Y8
A
1
3
163
64
224
3SIS
64
224
P0C6Y8
B
1
3
163
1
expression tag
GLY
62
3SIS
A
P0C6Y8
UNP
1
1
expression tag
SER
63
3SIS
A
P0C6Y8
UNP
2
1
ARG
engineered mutation
GLN
70
3SIS
A
P0C6Y8
UNP
70
9
1
VAL
engineered mutation
ILE
82
3SIS
A
P0C6Y8
UNP
82
21
1
SER
engineered mutation
ASN
151
3SIS
A
P0C6Y8
UNP
151
90
1
LEU
engineered mutation
SER
201
3SIS
A
P0C6Y8
UNP
201
140
2
expression tag
GLY
62
3SIS
B
P0C6Y8
UNP
1
2
expression tag
SER
63
3SIS
B
P0C6Y8
UNP
2
2
ARG
engineered mutation
GLN
70
3SIS
B
P0C6Y8
UNP
70
9
2
VAL
engineered mutation
ILE
82
3SIS
B
P0C6Y8
UNP
82
21
2
SER
engineered mutation
ASN
151
3SIS
B
P0C6Y8
UNP
151
90
2
LEU
engineered mutation
SER
201
3SIS
B
P0C6Y8
UNP
201
140
11
6
2
8
10
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ASP
66
A
ASP
5
A
TYR
69
A
TYR
8
A
PHE
205
A
PHE
144
A
PRO
209
A
PRO
148
A
TYR
80
A
TYR
19
A
LEU
84
A
LEU
23
A
TYR
165
A
TYR
104
A
PHE
170
A
PHE
109
A
ARG
173
A
ARG
112
A
THR
180
A
THR
119
A
THR
153
A
THR
92
A
SER
160
A
SER
99
A
TRP
138
A
TRP
77
A
LYS
145
A
LYS
84
A
TRP
102
A
TRP
41
A
ILE
108
A
ILE
47
A
GLY
90
A
GLY
29
A
THR
96
A
THR
35
A
ASN
198
A
ASN
137
A
SER
201
A
SER
140
A
THR
72
A
THR
11
A
PHE
74
A
PHE
13
A
ASP
66
A
ASP
5
A
TYR
69
A
TYR
8
A
PHE
205
A
PHE
144
A
PRO
209
A
PRO
148
A
TYR
80
A
TYR
19
A
LEU
84
A
LEU
23
A
TYR
165
A
TYR
104
A
PHE
170
A
PHE
109
A
ARG
173
A
ARG
112
A
THR
180
A
THR
119
A
THR
185
A
THR
124
A
SER
190
A
SER
129
A
VAL
112
A
VAL
51
A
LEU
121
A
LEU
60
A
GLN
124
A
GLN
63
A
ASN
132
A
ASN
71
B
THR
72
B
THR
11
B
PHE
74
B
PHE
13
B
ASN
198
B
ASN
137
B
SER
201
B
SER
140
B
GLY
90
B
GLY
29
B
THR
96
B
THR
35
B
TRP
102
B
TRP
41
B
ILE
108
B
ILE
47
B
TRP
138
B
TRP
77
B
LYS
145
B
LYS
84
B
THR
153
B
THR
92
B
SER
160
B
SER
99
B
ARG
173
B
ARG
112
B
THR
180
B
THR
119
B
THR
185
B
THR
124
B
SER
190
B
SER
129
B
THR
72
B
THR
11
B
PHE
74
B
PHE
13
B
ASN
198
B
ASN
137
B
SER
201
B
SER
140
B
GLY
90
B
GLY
29
B
THR
96
B
THR
35
B
TRP
102
B
TRP
41
B
ILE
108
B
ILE
47
B
TRP
138
B
TRP
77
B
LYS
145
B
LYS
84
B
THR
153
B
THR
92
B
SER
160
B
SER
99
B
ARG
173
B
ARG
112
B
THR
180
B
THR
119
B
TYR
165
B
TYR
104
B
PHE
170
B
PHE
109
B
TYR
80
B
TYR
19
B
ALA
85
B
ALA
24
B
ASP
204
B
ASP
143
B
PRO
209
B
PRO
148
B
VAL
112
B
VAL
51
B
LEU
121
B
LEU
60
B
GLN
124
B
GLN
63
B
ASN
132
B
ASN
71
19
P 21 21 21