0.007148 0.000000 0.001122 0.000000 0.019016 0.000000 0.000000 0.000000 0.027102 0.00000 0.00000 0.00000 Joint Center for Structural Genomics (JCSG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.000 98.920 90.000 139.899 52.586 37.350 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C2 H6 O2 62.068 1,2-ETHANEDIOL ETHYLENE GLYCOL non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be published 0353 Crystal structure of a Hypothetical aminotransferase (NCgl2491) from CORYNEBACTERIUM GLUTAMICUM ATCC 13032 KITASATO at 1.60 A resolution 10.2210/pdb3sno/pdb pdb_00003sno 100 1 double crystal monochromator CCD 2009-11-06 MARMOSAIC 325 mm CCD double crystal MAD M x-ray 1 0.91837 1.0 0.97949 1.0 0.97932 1.0 BL9-2 SSRL 0.91837,0.97949,0.97932 SYNCHROTRON SSRL BEAMLINE BL9-2 34247.047 Hypothetical aminotransferase 2.6.1.42 1 man polymer 62.068 1,2-ETHANEDIOL 3 syn non-polymer 18.015 water 187 nat water Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase no yes G(MSE)ALEPQIKSAPTPVILIVEPYGGSIRQQNPNLP(MSE)VFWDDAALTRGDGIFETLLIRDGHACNVRRHGERFKA SAALLGLPEPILEDWEKATQ(MSE)GIESWYSHPNAGEASCTWTLSRGRSSTGLASGWLTITPVSSDKLAQREHGVSV (MSE)TSSRGYSIDTGLPGIGKATRGELSKVERTPAPWLTVGAKTLAYAAN(MSE)AALRYAKSNGFDDVIFTDGDRVLE GATSTVVSFKGDKIRTPSPGGDILPGTTQAALFAHATEKGWRCKEKDLSIDDLFGADSVWLVSSVRGPVRVTRLDGHKLR KPDNEKEIKALITKALG GMALEPQIKSAPTPVILIVEPYGGSIRQQNPNLPMVFWDDAALTRGDGIFETLLIRDGHACNVRRHGERFKASAALLGLP EPILEDWEKATQMGIESWYSHPNAGEASCTWTLSRGRSSTGLASGWLTITPVSSDKLAQREHGVSVMTSSRGYSIDTGLP GIGKATRGELSKVERTPAPWLTVGAKTLAYAANMAALRYAKSNGFDDVIFTDGDRVLEGATSTVVSFKGDKIRTPSPGGD ILPGTTQAALFAHATEKGWRCKEKDLSIDDLFGADSVWLVSSVRGPVRVTRLDGHKLRKPDNEKEIKALITKALG A 394391 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n ATCC 13032 KITASATO sample Cgl2580 196627 Corynebacterium glutamicum 562 Escherichia Coli HK100 Plasmid SpeedET 1 1.98 37.93 DATA WERE SCALED USING XSCALE WITH FRIEDEL PAIRS KEPT AS SEPARATE WHEN COMPUTING R MERGE, COMPLETENESS AND <I/SIGMA(I)> VAPOR DIFFUSION, SITTING DROP 3.64 10.0% 2-methyl-2,4-pentanediol, 0.1M citric acid pH 3.64, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K 277 Joint Center for Structural Genomics JCSG PSI:Biology pdbx_struct_assembly_auth_evidence software citation_author database_2 struct_conn struct_ref_seq_dif struct_site repository Initial release Structure summary Author supporting evidence Refinement description Database references Database references Derived calculations 1 0 2011-07-20 1 1 2014-12-24 1 2 2017-10-25 1 3 2018-01-24 1 4 2023-02-01 _citation_author.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y RCSB Y RCSB 2011-06-29 REL REL EDO 1,2-ETHANEDIOL HOH water THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. EDO 500 2 EDO EDO 500 A EDO 501 2 EDO EDO 501 A EDO 502 2 EDO EDO 502 A HOH 503 3 HOH HOH 503 A HOH 504 3 HOH HOH 504 A HOH 505 3 HOH HOH 505 A HOH 506 3 HOH HOH 506 A HOH 507 3 HOH HOH 507 A HOH 508 3 HOH HOH 508 A HOH 509 3 HOH HOH 509 A HOH 510 3 HOH HOH 510 A HOH 511 3 HOH HOH 511 A HOH 512 3 HOH HOH 512 A HOH 513 3 HOH HOH 513 A HOH 514 3 HOH HOH 514 A HOH 515 3 HOH HOH 515 A HOH 516 3 HOH HOH 516 A HOH 517 3 HOH HOH 517 A HOH 518 3 HOH HOH 518 A HOH 519 3 HOH HOH 519 A HOH 520 3 HOH HOH 520 A HOH 521 3 HOH HOH 521 A HOH 522 3 HOH HOH 522 A HOH 523 3 HOH HOH 523 A HOH 524 3 HOH HOH 524 A HOH 525 3 HOH HOH 525 A HOH 526 3 HOH HOH 526 A HOH 527 3 HOH HOH 527 A HOH 528 3 HOH HOH 528 A HOH 529 3 HOH HOH 529 A HOH 530 3 HOH HOH 530 A HOH 531 3 HOH HOH 531 A HOH 532 3 HOH HOH 532 A HOH 533 3 HOH HOH 533 A HOH 534 3 HOH HOH 534 A HOH 535 3 HOH HOH 535 A HOH 536 3 HOH HOH 536 A HOH 537 3 HOH HOH 537 A HOH 538 3 HOH HOH 538 A HOH 539 3 HOH HOH 539 A HOH 540 3 HOH HOH 540 A HOH 541 3 HOH HOH 541 A HOH 542 3 HOH HOH 542 A HOH 543 3 HOH HOH 543 A HOH 544 3 HOH HOH 544 A HOH 545 3 HOH HOH 545 A HOH 546 3 HOH HOH 546 A HOH 547 3 HOH HOH 547 A HOH 548 3 HOH HOH 548 A HOH 549 3 HOH HOH 549 A HOH 550 3 HOH HOH 550 A HOH 551 3 HOH HOH 551 A HOH 552 3 HOH HOH 552 A HOH 553 3 HOH HOH 553 A HOH 554 3 HOH HOH 554 A HOH 555 3 HOH HOH 555 A HOH 556 3 HOH HOH 556 A HOH 557 3 HOH HOH 557 A HOH 558 3 HOH HOH 558 A HOH 559 3 HOH HOH 559 A HOH 560 3 HOH HOH 560 A HOH 561 3 HOH HOH 561 A HOH 562 3 HOH HOH 562 A HOH 563 3 HOH HOH 563 A HOH 564 3 HOH HOH 564 A HOH 565 3 HOH HOH 565 A HOH 566 3 HOH HOH 566 A HOH 567 3 HOH HOH 567 A HOH 568 3 HOH HOH 568 A HOH 569 3 HOH HOH 569 A HOH 570 3 HOH HOH 570 A HOH 571 3 HOH HOH 571 A HOH 572 3 HOH HOH 572 A HOH 573 3 HOH HOH 573 A HOH 574 3 HOH HOH 574 A HOH 575 3 HOH HOH 575 A HOH 576 3 HOH HOH 576 A HOH 577 3 HOH HOH 577 A HOH 578 3 HOH HOH 578 A HOH 579 3 HOH HOH 579 A HOH 580 3 HOH HOH 580 A HOH 581 3 HOH HOH 581 A HOH 582 3 HOH HOH 582 A HOH 583 3 HOH HOH 583 A HOH 584 3 HOH HOH 584 A HOH 585 3 HOH HOH 585 A HOH 586 3 HOH HOH 586 A HOH 587 3 HOH HOH 587 A HOH 588 3 HOH HOH 588 A HOH 589 3 HOH HOH 589 A HOH 590 3 HOH HOH 590 A HOH 591 3 HOH HOH 591 A HOH 592 3 HOH HOH 592 A HOH 593 3 HOH HOH 593 A HOH 594 3 HOH HOH 594 A HOH 595 3 HOH HOH 595 A HOH 596 3 HOH HOH 596 A HOH 597 3 HOH HOH 597 A HOH 598 3 HOH HOH 598 A HOH 599 3 HOH HOH 599 A HOH 600 3 HOH HOH 600 A HOH 601 3 HOH HOH 601 A HOH 602 3 HOH HOH 602 A HOH 603 3 HOH HOH 603 A HOH 604 3 HOH HOH 604 A HOH 605 3 HOH HOH 605 A HOH 606 3 HOH HOH 606 A HOH 607 3 HOH HOH 607 A HOH 608 3 HOH HOH 608 A HOH 609 3 HOH HOH 609 A HOH 610 3 HOH HOH 610 A HOH 611 3 HOH HOH 611 A HOH 612 3 HOH HOH 612 A HOH 613 3 HOH HOH 613 A HOH 614 3 HOH HOH 614 A HOH 615 3 HOH HOH 615 A HOH 616 3 HOH HOH 616 A HOH 617 3 HOH HOH 617 A HOH 618 3 HOH HOH 618 A HOH 619 3 HOH HOH 619 A HOH 620 3 HOH HOH 620 A HOH 621 3 HOH HOH 621 A HOH 622 3 HOH HOH 622 A HOH 623 3 HOH HOH 623 A HOH 624 3 HOH HOH 624 A HOH 625 3 HOH HOH 625 A HOH 626 3 HOH HOH 626 A HOH 627 3 HOH HOH 627 A HOH 628 3 HOH HOH 628 A HOH 629 3 HOH HOH 629 A HOH 630 3 HOH HOH 630 A HOH 631 3 HOH HOH 631 A HOH 632 3 HOH HOH 632 A HOH 633 3 HOH HOH 633 A HOH 634 3 HOH HOH 634 A HOH 635 3 HOH HOH 635 A HOH 636 3 HOH HOH 636 A HOH 637 3 HOH HOH 637 A HOH 638 3 HOH HOH 638 A HOH 639 3 HOH HOH 639 A HOH 640 3 HOH HOH 640 A HOH 641 3 HOH HOH 641 A HOH 642 3 HOH HOH 642 A HOH 643 3 HOH HOH 643 A HOH 644 3 HOH HOH 644 A HOH 645 3 HOH HOH 645 A HOH 646 3 HOH HOH 646 A HOH 647 3 HOH HOH 647 A HOH 648 3 HOH HOH 648 A HOH 649 3 HOH HOH 649 A HOH 650 3 HOH HOH 650 A HOH 651 3 HOH HOH 651 A HOH 652 3 HOH HOH 652 A HOH 653 3 HOH HOH 653 A HOH 654 3 HOH HOH 654 A HOH 655 3 HOH HOH 655 A HOH 656 3 HOH HOH 656 A HOH 657 3 HOH HOH 657 A HOH 658 3 HOH HOH 658 A HOH 659 3 HOH HOH 659 A HOH 660 3 HOH HOH 660 A HOH 661 3 HOH HOH 661 A HOH 662 3 HOH HOH 662 A HOH 663 3 HOH HOH 663 A HOH 664 3 HOH HOH 664 A HOH 665 3 HOH HOH 665 A HOH 666 3 HOH HOH 666 A HOH 667 3 HOH HOH 667 A HOH 668 3 HOH HOH 668 A HOH 669 3 HOH HOH 669 A HOH 670 3 HOH HOH 670 A HOH 671 3 HOH HOH 671 A HOH 672 3 HOH HOH 672 A HOH 673 3 HOH HOH 673 A HOH 674 3 HOH HOH 674 A HOH 675 3 HOH HOH 675 A HOH 676 3 HOH HOH 676 A HOH 677 3 HOH HOH 677 A HOH 678 3 HOH HOH 678 A HOH 679 3 HOH HOH 679 A HOH 680 3 HOH HOH 680 A HOH 681 3 HOH HOH 681 A HOH 682 3 HOH HOH 682 A HOH 683 3 HOH HOH 683 A HOH 684 3 HOH HOH 684 A HOH 685 3 HOH HOH 685 A HOH 686 3 HOH HOH 686 A HOH 687 3 HOH HOH 687 A HOH 688 3 HOH HOH 688 A HOH 689 3 HOH HOH 689 A n 1 0 A n 2 1 A n 3 2 A n 4 3 A n 5 4 A n 6 5 A n 7 6 A n 8 7 A n 9 8 A n 10 9 A ALA 10 n 11 ALA 10 A PRO 11 n 12 PRO 11 A THR 12 n 13 THR 12 A PRO 13 n 14 PRO 13 A VAL 14 n 15 VAL 14 A ILE 15 n 16 ILE 15 A LEU 16 n 17 LEU 16 A ILE 17 n 18 ILE 17 A VAL 18 n 19 VAL 18 A GLU 19 n 20 GLU 19 A PRO 20 n 21 PRO 20 A TYR 21 n 22 TYR 21 A GLY 22 n 23 GLY 22 A GLY 23 n 24 GLY 23 A SER 24 n 25 SER 24 A ILE 25 n 26 ILE 25 A ARG 26 n 27 ARG 26 A GLN 27 n 28 GLN 27 A GLN 28 n 29 GLN 28 A ASN 29 n 30 ASN 29 A PRO 30 n 31 PRO 30 A ASN 31 n 32 ASN 31 A LEU 32 n 33 LEU 32 A PRO 33 n 34 PRO 33 A MSE 34 n 35 MSE 34 A VAL 35 n 36 VAL 35 A PHE 36 n 37 PHE 36 A TRP 37 n 38 TRP 37 A ASP 38 n 39 ASP 38 A ASP 39 n 40 ASP 39 A ALA 40 n 41 ALA 40 A ALA 41 n 42 ALA 41 A LEU 42 n 43 LEU 42 A THR 43 n 44 THR 43 A ARG 44 n 45 ARG 44 A GLY 45 n 46 GLY 45 A ASP 46 n 47 ASP 46 A GLY 47 n 48 GLY 47 A ILE 48 n 49 ILE 48 A PHE 49 n 50 PHE 49 A GLU 50 n 51 GLU 50 A THR 51 n 52 THR 51 A LEU 52 n 53 LEU 52 A LEU 53 n 54 LEU 53 A ILE 54 n 55 ILE 54 A ARG 55 n 56 ARG 55 A ASP 56 n 57 ASP 56 A GLY 57 n 58 GLY 57 A HIS 58 n 59 HIS 58 A ALA 59 n 60 ALA 59 A CYS 60 n 61 CYS 60 A ASN 61 n 62 ASN 61 A VAL 62 n 63 VAL 62 A ARG 63 n 64 ARG 63 A ARG 64 n 65 ARG 64 A HIS 65 n 66 HIS 65 A GLY 66 n 67 GLY 66 A GLU 67 n 68 GLU 67 A ARG 68 n 69 ARG 68 A PHE 69 n 70 PHE 69 A LYS 70 n 71 LYS 70 A ALA 71 n 72 ALA 71 A SER 72 n 73 SER 72 A ALA 73 n 74 ALA 73 A ALA 74 n 75 ALA 74 A LEU 75 n 76 LEU 75 A LEU 76 n 77 LEU 76 A GLY 77 n 78 GLY 77 A LEU 78 n 79 LEU 78 A PRO 79 n 80 PRO 79 A GLU 80 n 81 GLU 80 A PRO 81 n 82 PRO 81 A ILE 82 n 83 ILE 82 A LEU 83 n 84 LEU 83 A GLU 84 n 85 GLU 84 A ASP 85 n 86 ASP 85 A TRP 86 n 87 TRP 86 A GLU 87 n 88 GLU 87 A LYS 88 n 89 LYS 88 A ALA 89 n 90 ALA 89 A THR 90 n 91 THR 90 A GLN 91 n 92 GLN 91 A MSE 92 n 93 MSE 92 A GLY 93 n 94 GLY 93 A ILE 94 n 95 ILE 94 A GLU 95 n 96 GLU 95 A SER 96 n 97 SER 96 A TRP 97 n 98 TRP 97 A TYR 98 n 99 TYR 98 A SER 99 n 100 SER 99 A HIS 100 n 101 HIS 100 A PRO 101 n 102 PRO 101 A n 103 102 A ALA 103 n 104 ALA 103 A GLY 104 n 105 GLY 104 A GLU 105 n 106 GLU 105 A ALA 106 n 107 ALA 106 A SER 107 n 108 SER 107 A CYS 108 n 109 CYS 108 A THR 109 n 110 THR 109 A TRP 110 n 111 TRP 110 A THR 111 n 112 THR 111 A LEU 112 n 113 LEU 112 A SER 113 n 114 SER 113 A ARG 114 n 115 ARG 114 A GLY 115 n 116 GLY 115 A ARG 116 n 117 ARG 116 A SER 117 n 118 SER 117 A SER 118 n 119 SER 118 A THR 119 n 120 THR 119 A GLY 120 n 121 GLY 120 A LEU 121 n 122 LEU 121 A ALA 122 n 123 ALA 122 A SER 123 n 124 SER 123 A GLY 124 n 125 GLY 124 A TRP 125 n 126 TRP 125 A LEU 126 n 127 LEU 126 A THR 127 n 128 THR 127 A ILE 128 n 129 ILE 128 A THR 129 n 130 THR 129 A PRO 130 n 131 PRO 130 A VAL 131 n 132 VAL 131 A SER 132 n 133 SER 132 A SER 133 n 134 SER 133 A ASP 134 n 135 ASP 134 A LYS 135 n 136 LYS 135 A LEU 136 n 137 LEU 136 A ALA 137 n 138 ALA 137 A GLN 138 n 139 GLN 138 A ARG 139 n 140 ARG 139 A GLU 140 n 141 GLU 140 A HIS 141 n 142 HIS 141 A GLY 142 n 143 GLY 142 A VAL 143 n 144 VAL 143 A SER 144 n 145 SER 144 A VAL 145 n 146 VAL 145 A MSE 146 n 147 MSE 146 A THR 147 n 148 THR 147 A SER 148 n 149 SER 148 A SER 149 n 150 SER 149 A ARG 150 n 151 ARG 150 A n 152 151 A n 153 152 A n 154 153 A n 155 154 A n 156 155 A n 157 156 A n 158 157 A n 159 158 A n 160 159 A n 161 160 A n 162 161 A n 163 162 A n 164 163 A n 165 164 A n 166 165 A n 167 166 A n 168 167 A n 169 168 A n 170 169 A n 171 170 A n 172 171 A n 173 172 A n 174 173 A n 175 174 A n 176 175 A n 177 176 A n 178 177 A n 179 178 A n 180 179 A n 181 180 A n 182 181 A n 183 182 A n 184 183 A n 185 184 A n 186 185 A n 187 186 A n 188 187 A n 189 188 A n 190 189 A n 191 190 A n 192 191 A n 193 192 A n 194 193 A n 195 194 A n 196 195 A n 197 196 A n 198 197 A n 199 198 A n 200 199 A n 201 200 A n 202 201 A n 203 202 A n 204 203 A PHE 204 n 205 PHE 204 A ASP 205 n 206 ASP 205 A ASP 206 n 207 ASP 206 A VAL 207 n 208 VAL 207 A ILE 208 n 209 ILE 208 A PHE 209 n 210 PHE 209 A THR 210 n 211 THR 210 A ASP 211 n 212 ASP 211 A GLY 212 n 213 GLY 212 A ASP 213 n 214 ASP 213 A ARG 214 n 215 ARG 214 A VAL 215 n 216 VAL 215 A LEU 216 n 217 LEU 216 A GLU 217 n 218 GLU 217 A GLY 218 n 219 GLY 218 A ALA 219 n 220 ALA 219 A THR 220 n 221 THR 220 A SER 221 n 222 SER 221 A THR 222 n 223 THR 222 A VAL 223 n 224 VAL 223 A VAL 224 n 225 VAL 224 A SER 225 n 226 SER 225 A PHE 226 n 227 PHE 226 A LYS 227 n 228 LYS 227 A GLY 228 n 229 GLY 228 A ASP 229 n 230 ASP 229 A LYS 230 n 231 LYS 230 A ILE 231 n 232 ILE 231 A ARG 232 n 233 ARG 232 A THR 233 n 234 THR 233 A PRO 234 n 235 PRO 234 A SER 235 n 236 SER 235 A PRO 236 n 237 PRO 236 A n 238 237 A n 239 238 A n 240 239 A n 241 240 A n 242 241 A n 243 242 A GLY 243 n 244 GLY 243 A THR 244 n 245 THR 244 A THR 245 n 246 THR 245 A GLN 246 n 247 GLN 246 A ALA 247 n 248 ALA 247 A ALA 248 n 249 ALA 248 A LEU 249 n 250 LEU 249 A PHE 250 n 251 PHE 250 A ALA 251 n 252 ALA 251 A HIS 252 n 253 HIS 252 A ALA 253 n 254 ALA 253 A THR 254 n 255 THR 254 A GLU 255 n 256 GLU 255 A LYS 256 n 257 LYS 256 A GLY 257 n 258 GLY 257 A TRP 258 n 259 TRP 258 A ARG 259 n 260 ARG 259 A CYS 260 n 261 CYS 260 A LYS 261 n 262 LYS 261 A GLU 262 n 263 GLU 262 A LYS 263 n 264 LYS 263 A ASP 264 n 265 ASP 264 A LEU 265 n 266 LEU 265 A SER 266 n 267 SER 266 A ILE 267 n 268 ILE 267 A ASP 268 n 269 ASP 268 A ASP 269 n 270 ASP 269 A LEU 270 n 271 LEU 270 A PHE 271 n 272 PHE 271 A GLY 272 n 273 GLY 272 A ALA 273 n 274 ALA 273 A ASP 274 n 275 ASP 274 A SER 275 n 276 SER 275 A VAL 276 n 277 VAL 276 A TRP 277 n 278 TRP 277 A LEU 278 n 279 LEU 278 A VAL 279 n 280 VAL 279 A SER 280 n 281 SER 280 A SER 281 n 282 SER 281 A VAL 282 n 283 VAL 282 A ARG 283 n 284 ARG 283 A GLY 284 n 285 GLY 284 A PRO 285 n 286 PRO 285 A VAL 286 n 287 VAL 286 A ARG 287 n 288 ARG 287 A VAL 288 n 289 VAL 288 A THR 289 n 290 THR 289 A ARG 290 n 291 ARG 290 A LEU 291 n 292 LEU 291 A ASP 292 n 293 ASP 292 A GLY 293 n 294 GLY 293 A HIS 294 n 295 HIS 294 A LYS 295 n 296 LYS 295 A LEU 296 n 297 LEU 296 A ARG 297 n 298 ARG 297 A LYS 298 n 299 LYS 298 A PRO 299 n 300 PRO 299 A ASP 300 n 301 ASP 300 A ASN 301 n 302 ASN 301 A GLU 302 n 303 GLU 302 A LYS 303 n 304 LYS 303 A GLU 304 n 305 GLU 304 A ILE 305 n 306 ILE 305 A LYS 306 n 307 LYS 306 A ALA 307 n 308 ALA 307 A LEU 308 n 309 LEU 308 A ILE 309 n 310 ILE 309 A THR 310 n 311 THR 310 A LYS 311 n 312 LYS 311 A ALA 312 n 313 ALA 312 A LEU 313 n 314 LEU 313 A GLY 314 n 315 GLY 314 A 1.7657 1.0792 -0.1063 1.6581 -0.0924 0.5035 -0.1551 0.0186 -0.1213 -0.2014 0.0473 -0.0408 0.0754 -0.0052 0.1078 -0.1001 0.0040 0.0097 -0.0982 0.0178 -0.0445 refined 51.3026 35.0874 -3.3230 X-RAY DIFFRACTION A 10 A 314 X-RAY DIFFRACTION 1 { A|10 - A|314 } author_and_software_defined_assembly PISA 2 dimeric gel filtration light scattering 2170 -8 24170 A MSE 34 SELENOMETHIONINE A MSE 35 MET A MSE 92 SELENOMETHIONINE A MSE 93 MET A MSE 146 SELENOMETHIONINE A MSE 147 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 2_655 -x+1,y,-z crystal symmetry operation 139.8990000000 0.0000000000 0.0000000000 A O ARG 26 A O ARG 27 A N ILE 17 A N ILE 18 A N VAL 14 A N VAL 15 A O ILE 128 A O ILE 129 A O THR 129 A O THR 130 A N SER 107 A N SER 108 A O CYS 108 A O CYS 109 A N LEU 52 A N LEU 53 A N ARG 55 A N ARG 56 A O HIS 58 A O HIS 59 A O LEU 216 A O LEU 217 A N PHE 209 A N PHE 210 A O ILE 208 A O ILE 209 A N MSE 146 A N MSE 147 A N VAL 145 A N VAL 146 A O ARG 290 A O ARG 291 A O VAL 288 A O VAL 289 A N VAL 276 A N VAL 277 A O TRP 277 A O TRP 278 A N VAL 224 A N VAL 225 A N SER 225 A N SER 226 A O ARG 232 A O ARG 233 A N THR 233 A N THR 234 A O LYS 263 A O LYS 264 1 A C PRO 101 A C PRO 102 1 Y 1 A O PRO 101 A O PRO 102 1 Y 1 A OG SER 144 A OG SER 145 1 Y 1 A CG1 VAL 145 A CG1 VAL 146 1 Y 1 A CG2 VAL 145 A CG2 VAL 146 1 Y 1 A CG ARG 150 A CG ARG 151 1 Y 1 A CD ARG 150 A CD ARG 151 1 Y 1 A NE ARG 150 A NE ARG 151 1 Y 1 A CZ ARG 150 A CZ ARG 151 1 Y 1 A NH1 ARG 150 A NH1 ARG 151 1 Y 1 A NH2 ARG 150 A NH2 ARG 151 1 Y 1 A CG PHE 204 A CG PHE 205 1 Y 1 A CD1 PHE 204 A CD1 PHE 205 1 Y 1 A CD2 PHE 204 A CD2 PHE 205 1 Y 1 A CE1 PHE 204 A CE1 PHE 205 1 Y 1 A CE2 PHE 204 A CE2 PHE 205 1 Y 1 A CZ PHE 204 A CZ PHE 205 1 Y 1 A CG ASP 205 A CG ASP 206 1 Y 1 A OD1 ASP 205 A OD1 ASP 206 1 Y 1 A OD2 ASP 205 A OD2 ASP 206 1 Y 1 A CG PHE 209 A CG PHE 210 1 Y 1 A CD1 PHE 209 A CD1 PHE 210 1 Y 1 A CD2 PHE 209 A CD2 PHE 210 1 Y 1 A CE1 PHE 209 A CE1 PHE 210 1 Y 1 A CE2 PHE 209 A CE2 PHE 210 1 Y 1 A CZ PHE 209 A CZ PHE 210 1 Y 1 A CG ASP 213 A CG ASP 214 1 Y 1 A OD1 ASP 213 A OD1 ASP 214 1 Y 1 A OD2 ASP 213 A OD2 ASP 214 1 Y 1 A CG GLU 217 A CG GLU 218 1 Y 1 A CD GLU 217 A CD GLU 218 1 Y 1 A OE1 GLU 217 A OE1 GLU 218 1 Y 1 A OE2 GLU 217 A OE2 GLU 218 1 Y 1 A CG HIS 294 A CG HIS 295 1 Y 1 A ND1 HIS 294 A ND1 HIS 295 1 Y 1 A CD2 HIS 294 A CD2 HIS 295 1 Y 1 A CE1 HIS 294 A CE1 HIS 295 1 Y 1 A NE2 HIS 294 A NE2 HIS 295 1 Y 1 A CG LYS 295 A CG LYS 296 1 Y 1 A CD LYS 295 A CD LYS 296 1 Y 1 A CE LYS 295 A CE LYS 296 1 Y 1 A NZ LYS 295 A NZ LYS 296 1 Y 1 A CG ARG 297 A CG ARG 298 1 Y 1 A CD ARG 297 A CD ARG 298 1 Y 1 A NE ARG 297 A NE ARG 298 1 Y 1 A CZ ARG 297 A CZ ARG 298 1 Y 1 A NH1 ARG 297 A NH1 ARG 298 1 Y 1 A NH2 ARG 297 A NH2 ARG 298 1 Y 1 A CG LYS 303 A CG LYS 304 1 Y 1 A CD LYS 303 A CD LYS 304 1 Y 1 A CE LYS 303 A CE LYS 304 1 Y 1 A NZ LYS 303 A NZ LYS 304 1 Y 1 A GLY 0 A GLY 1 1 Y 1 A MSE 1 A MSE 2 1 Y 1 A ALA 2 A ALA 3 1 Y 1 A LEU 3 A LEU 4 1 Y 1 A GLU 4 A GLU 5 1 Y 1 A PRO 5 A PRO 6 1 Y 1 A GLN 6 A GLN 7 1 Y 1 A ILE 7 A ILE 8 1 Y 1 A LYS 8 A LYS 9 1 Y 1 A SER 9 A SER 10 1 Y 1 A ASN 102 A ASN 103 1 Y 1 A GLY 151 A GLY 152 1 Y 1 A TYR 152 A TYR 153 1 Y 1 A SER 153 A SER 154 1 Y 1 A ILE 154 A ILE 155 1 Y 1 A ASP 155 A ASP 156 1 Y 1 A THR 156 A THR 157 1 Y 1 A GLY 157 A GLY 158 1 Y 1 A LEU 158 A LEU 159 1 Y 1 A PRO 159 A PRO 160 1 Y 1 A GLY 160 A GLY 161 1 Y 1 A ILE 161 A ILE 162 1 Y 1 A GLY 162 A GLY 163 1 Y 1 A LYS 163 A LYS 164 1 Y 1 A ALA 164 A ALA 165 1 Y 1 A THR 165 A THR 166 1 Y 1 A ARG 166 A ARG 167 1 Y 1 A GLY 167 A GLY 168 1 Y 1 A GLU 168 A GLU 169 1 Y 1 A LEU 169 A LEU 170 1 Y 1 A SER 170 A SER 171 1 Y 1 A LYS 171 A LYS 172 1 Y 1 A VAL 172 A VAL 173 1 Y 1 A GLU 173 A GLU 174 1 Y 1 A ARG 174 A ARG 175 1 Y 1 A THR 175 A THR 176 1 Y 1 A PRO 176 A PRO 177 1 Y 1 A ALA 177 A ALA 178 1 Y 1 A PRO 178 A PRO 179 1 Y 1 A TRP 179 A TRP 180 1 Y 1 A LEU 180 A LEU 181 1 Y 1 A THR 181 A THR 182 1 Y 1 A VAL 182 A VAL 183 1 Y 1 A GLY 183 A GLY 184 1 Y 1 A ALA 184 A ALA 185 1 Y 1 A LYS 185 A LYS 186 1 Y 1 A THR 186 A THR 187 1 Y 1 A LEU 187 A LEU 188 1 Y 1 A ALA 188 A ALA 189 1 Y 1 A TYR 189 A TYR 190 1 Y 1 A ALA 190 A ALA 191 1 Y 1 A ALA 191 A ALA 192 1 Y 1 A ASN 192 A ASN 193 1 Y 1 A MSE 193 A MSE 194 1 Y 1 A ALA 194 A ALA 195 1 Y 1 A ALA 195 A ALA 196 1 Y 1 A LEU 196 A LEU 197 1 Y 1 A ARG 197 A ARG 198 1 Y 1 A TYR 198 A TYR 199 1 Y 1 A ALA 199 A ALA 200 1 Y 1 A LYS 200 A LYS 201 1 Y 1 A SER 201 A SER 202 1 Y 1 A ASN 202 A ASN 203 1 Y 1 A GLY 203 A GLY 204 1 Y 1 A GLY 237 A GLY 238 1 Y 1 A GLY 238 A GLY 239 1 Y 1 A ASP 239 A ASP 240 1 Y 1 A ILE 240 A ILE 241 1 Y 1 A LEU 241 A LEU 242 1 Y 1 A PRO 242 A PRO 243 1 Y 1 A MSE 34 -130.55 -36.97 1 A ASP 56 39.68 59.42 1 A ASP 205 -157.13 82.49 1 A LEU 216 -103.44 -82.81 1 A THR 220 -143.09 31.82 1 A ASP 292 66.93 -17.56 1 A HIS 294 61.67 137.01 1 A LEU 296 -85.39 39.90 1 A ARG 297 56.03 -159.56 1 A LYS 298 -160.32 116.63 111.640 38.1043 16.990 6.6766 0.0000 -0.3661 -7.1797 0.0000 0.5031 0.9300 0.9227 1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 3. 1,2 ETHANEDIOL (EDO) FROM THE CRYOPROTECTANT HAS BEEN MODELED IN THE SOLVENT STRUCTURE. 4. RAMACHANDRAN OUTLIER AT RESIDUE 294 IS IN A REGION OF SUB-OPTIMAL ELECTRON DENSITY. 5. THE STRUCTURE HAS SEVERAL UNMODELED REGIONS WHICH HAVE ELECTRON DENSITY THAT COULD NOT BE RELIABLY INTERPRETED. IN ADDITION, THERE ARE THREE REGIONS OF SUB-OPTIMAL MODEL FIT IN WHICH THE MOST STRUCTURALLY SIMILAR PROTEIN (AS DETERMINED BY THE PROGRAM SSM), PDB ID 5DAA, WAS USED TO GUIDE THE MODELING. THESE INCLUDE RESIDUES 143-150, 204-221 AND 291-295. 6. THE REFINEMENT WAS RESTRAINED WITH THE MAD PHASES. 0.2529 0.2309 0.2320 1.6000 28.757 1737 34490 5.0400 1.000 0.370 RANDOM 1 THROUGHOUT 0.000 MAD 1.6000 28.757 187 2033 12 0 1834 956 SINUSOIDAL 2.000 41 HARMONIC 2.000 315 HARMONIC 5.000 1996 HARMONIC 20.000 274 SEMIHARMONIC 5.000 2391 SEMIHARMONIC 4.000 0.010 1996 HARMONIC 2.000 1.030 2729 HARMONIC 2.000 3.330 2.520 0.2314 0.2342 0.2340 1.6500 111 2535 2646 17 4.2000 26.711 1.60 28.757 3SNO 34491 -3.000 0.027 1 12.530 92.400 0.456 1.600 1.660 1.7 7588 5736 1 79.500 0.377 1.660 1.720 2.0 7739 5743 1 91.500 0.233 1.720 1.800 3.0 8879 6601 1 92.200 0.145 1.800 1.900 4.6 9136 6797 1 93.300 0.076 1.900 2.020 7.7 8778 6568 1 93.500 0.050 2.020 2.170 11.2 8305 6240 1 94.400 0.035 2.170 2.390 15.0 8870 6684 1 95.300 0.027 2.390 2.730 19.7 8591 6497 1 95.200 0.019 2.730 3.440 26.4 8912 6743 1 96.200 0.018 3.440 31.3 8533 6515 1 93.000 model building D.C. & J.S. Richardson lab molprobity@kinemage.biochem.duke.edu http://kinemage.biochem.duke.edu/molprobity/ MolProbity package 3beta29 data extraction PDB deposit@deposit.rcsb.org June 10, 2010 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.10 phasing George M. Sheldrick gsheldr@shelx.uni-ac.gwdg.de Fortran_77 http://shelx.uni-ac.gwdg.de/SHELX/ SHELX package phasing Eric de La Fortelle sharp-develop@globalphasing.com http://www.globalphasing.com/sharp/ SHARP package data scaling Wolfgang Kabsch http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html XSCALE package January 30, 2009 refinement Gerard Bricogne buster-develop@GlobalPhasing.com http://www.globalphasing.com/buster/ BUSTER-TNT program 2.8.0 data reduction XDS phasing SHELXD refinement BUSTER 2.8.0 Crystal structure of a putative aminotransferase (NCgl2491) from Corynebacterium glutamicum ATCC 13032 at 1.60 A resolution 1 N N 2 N N 2 N N 2 N N 3 N N CRYSTAL PACKING ANALYSIS AND SIZE-EXCLUSION CHROMATOGRAPHY IN COMBINATION WITH STATIC LIGHT SCATTERING SUPPORT THE ASSIGNMENT OF A DIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION. A ASN 61 A ASN 62 HELX_P A GLY 77 A GLY 78 1 1 17 A ILE 82 A ILE 83 HELX_P A SER 99 A SER 100 1 2 18 A SER 132 A SER 133 HELX_P A GLY 142 A GLY 143 1 3 11 A GLY 243 A GLY 244 HELX_P A LYS 256 A LYS 257 1 4 14 A SER 266 A SER 267 HELX_P A ALA 273 A ALA 274 1 5 8 A ASN 301 A ASN 302 HELX_P A LEU 313 A LEU 314 1 6 13 covale 1.320 both A PRO 33 A C PRO 34 1_555 A MSE 34 A N MSE 35 1_555 covale 1.344 both A MSE 34 A C MSE 35 1_555 A VAL 35 A N VAL 36 1_555 covale 1.343 both A GLN 91 A C GLN 92 1_555 A MSE 92 A N MSE 93 1_555 covale 1.344 both A MSE 92 A C MSE 93 1_555 A GLY 93 A N GLY 94 1_555 covale 1.347 both A VAL 145 A C VAL 146 1_555 A MSE 146 A N MSE 147 1_555 covale 1.329 both A MSE 146 A C MSE 147 1_555 A THR 147 A N THR 148 1_555 TRANSFERASE D-aminoacid aminotransferase-like PLP-dependent enzymes, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, TRANSFERASE A PHE 204 A PHE 205 1 A ASP 205 A ASP 206 -0.72 Q8NMJ3_CORGL UNP 1 1 Q8NMJ3 MALEPQIKSAPTPVILIVEPYGGSIRQQNPNLPMVFWDDAALTRGDGIFETLLIRDGHACNVRRHGERFKASAALLGLPE PILEDWEKATQMGIESWYSHPNAGEASCTWTLSRGRSSTGLASGWLTITPVSSDKLAQREHGVSVMTSSRGYSIDTGLPG IGKATRGELSKVERTPAPWLTVGAKTLAYAANMAALRYAKSNGFDDVIFTDGDRVLEGATSTVVSFKGDKIRTPSPGGDI LPGTTQAALFAHATEKGWRCKEKDLSIDDLFGADSVWLVSSVRGPVRVTRLDGHKLRKPDNEKEIKALITKALG 1 314 3SNO 1 314 Q8NMJ3 A 1 2 315 1 expression tag GLY 0 3SNO A Q8NMJ3 UNP 1 6 8 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel parallel anti-parallel anti-parallel anti-parallel parallel A ILE 25 A ILE 26 A GLN 28 A GLN 29 A VAL 14 A VAL 15 A VAL 18 A VAL 19 A SER 123 A SER 124 A PRO 130 A PRO 131 A ALA 106 A ALA 107 A SER 113 A SER 114 A GLY 47 A GLY 48 A ARG 55 A ARG 56 A HIS 58 A HIS 59 A ALA 59 A ALA 60 A ARG 214 A ARG 215 A GLY 218 A GLY 219 A ASP 205 A ASP 206 A ASP 211 A ASP 212 A VAL 143 A VAL 144 A SER 149 A SER 150 A GLY 284 A GLY 285 A LEU 291 A LEU 292 A SER 275 A SER 276 A SER 280 A SER 281 A THR 222 A THR 223 A LYS 227 A LYS 228 A LYS 230 A LYS 231 A PRO 234 A PRO 235 A ARG 259 A ARG 260 A LYS 263 A LYS 264 BINDING SITE FOR RESIDUE EDO A 500 A EDO 500 Software 6 BINDING SITE FOR RESIDUE EDO A 501 A EDO 501 Software 4 BINDING SITE FOR RESIDUE EDO A 502 A EDO 502 Software 2 A ASP 229 A ASP 230 6 1_555 A LYS 256 A LYS 257 6 1_555 A GLY 257 A GLY 258 6 1_555 A TRP 258 A TRP 259 6 1_555 A EDO 501 C EDO 6 4_545 A HOH 669 E HOH 6 1_555 A GLU 87 A GLU 88 4 1_555 A LYS 88 A LYS 89 4 1_555 A GLN 91 A GLN 92 4 1_555 A EDO 500 B EDO 4 4_555 A MSE 34 A MSE 35 2 1_555 A HOH 516 E HOH 2 1_555 5 C 1 2 1