0.007148
0.000000
0.001122
0.000000
0.019016
0.000000
0.000000
0.000000
0.027102
0.00000
0.00000
0.00000
Joint Center for Structural Genomics (JCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
98.920
90.000
139.899
52.586
37.350
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be published
0353
Crystal structure of a Hypothetical aminotransferase (NCgl2491) from CORYNEBACTERIUM GLUTAMICUM ATCC 13032 KITASATO at 1.60 A resolution
10.2210/pdb3sno/pdb
pdb_00003sno
100
1
double crystal monochromator
CCD
2009-11-06
MARMOSAIC 325 mm CCD
double crystal
MAD
M
x-ray
1
0.91837
1.0
0.97949
1.0
0.97932
1.0
BL9-2
SSRL
0.91837,0.97949,0.97932
SYNCHROTRON
SSRL BEAMLINE BL9-2
34247.047
Hypothetical aminotransferase
2.6.1.42
1
man
polymer
62.068
1,2-ETHANEDIOL
3
syn
non-polymer
18.015
water
187
nat
water
Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase
no
yes
G(MSE)ALEPQIKSAPTPVILIVEPYGGSIRQQNPNLP(MSE)VFWDDAALTRGDGIFETLLIRDGHACNVRRHGERFKA
SAALLGLPEPILEDWEKATQ(MSE)GIESWYSHPNAGEASCTWTLSRGRSSTGLASGWLTITPVSSDKLAQREHGVSV
(MSE)TSSRGYSIDTGLPGIGKATRGELSKVERTPAPWLTVGAKTLAYAAN(MSE)AALRYAKSNGFDDVIFTDGDRVLE
GATSTVVSFKGDKIRTPSPGGDILPGTTQAALFAHATEKGWRCKEKDLSIDDLFGADSVWLVSSVRGPVRVTRLDGHKLR
KPDNEKEIKALITKALG
GMALEPQIKSAPTPVILIVEPYGGSIRQQNPNLPMVFWDDAALTRGDGIFETLLIRDGHACNVRRHGERFKASAALLGLP
EPILEDWEKATQMGIESWYSHPNAGEASCTWTLSRGRSSTGLASGWLTITPVSSDKLAQREHGVSVMTSSRGYSIDTGLP
GIGKATRGELSKVERTPAPWLTVGAKTLAYAANMAALRYAKSNGFDDVIFTDGDRVLEGATSTVVSFKGDKIRTPSPGGD
ILPGTTQAALFAHATEKGWRCKEKDLSIDDLFGADSVWLVSSVRGPVRVTRLDGHKLRKPDNEKEIKALITKALG
A
394391
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ATCC 13032 KITASATO
sample
Cgl2580
196627
Corynebacterium glutamicum
562
Escherichia Coli
HK100
Plasmid
SpeedET
1
1.98
37.93
DATA WERE SCALED USING XSCALE WITH FRIEDEL PAIRS KEPT AS SEPARATE WHEN COMPUTING R MERGE, COMPLETENESS AND <I/SIGMA(I)>
VAPOR DIFFUSION, SITTING DROP
3.64
10.0% 2-methyl-2,4-pentanediol, 0.1M citric acid pH 3.64, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
277
Joint Center for Structural Genomics
JCSG
PSI:Biology
pdbx_struct_assembly_auth_evidence
software
citation_author
database_2
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Structure summary
Author supporting evidence
Refinement description
Database references
Database references
Derived calculations
1
0
2011-07-20
1
1
2014-12-24
1
2
2017-10-25
1
3
2018-01-24
1
4
2023-02-01
_citation_author.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2011-06-29
REL
REL
EDO
1,2-ETHANEDIOL
HOH
water
THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE.
EDO
500
2
EDO
EDO
500
A
EDO
501
2
EDO
EDO
501
A
EDO
502
2
EDO
EDO
502
A
HOH
503
3
HOH
HOH
503
A
HOH
504
3
HOH
HOH
504
A
HOH
505
3
HOH
HOH
505
A
HOH
506
3
HOH
HOH
506
A
HOH
507
3
HOH
HOH
507
A
HOH
508
3
HOH
HOH
508
A
HOH
509
3
HOH
HOH
509
A
HOH
510
3
HOH
HOH
510
A
HOH
511
3
HOH
HOH
511
A
HOH
512
3
HOH
HOH
512
A
HOH
513
3
HOH
HOH
513
A
HOH
514
3
HOH
HOH
514
A
HOH
515
3
HOH
HOH
515
A
HOH
516
3
HOH
HOH
516
A
HOH
517
3
HOH
HOH
517
A
HOH
518
3
HOH
HOH
518
A
HOH
519
3
HOH
HOH
519
A
HOH
520
3
HOH
HOH
520
A
HOH
521
3
HOH
HOH
521
A
HOH
522
3
HOH
HOH
522
A
HOH
523
3
HOH
HOH
523
A
HOH
524
3
HOH
HOH
524
A
HOH
525
3
HOH
HOH
525
A
HOH
526
3
HOH
HOH
526
A
HOH
527
3
HOH
HOH
527
A
HOH
528
3
HOH
HOH
528
A
HOH
529
3
HOH
HOH
529
A
HOH
530
3
HOH
HOH
530
A
HOH
531
3
HOH
HOH
531
A
HOH
532
3
HOH
HOH
532
A
HOH
533
3
HOH
HOH
533
A
HOH
534
3
HOH
HOH
534
A
HOH
535
3
HOH
HOH
535
A
HOH
536
3
HOH
HOH
536
A
HOH
537
3
HOH
HOH
537
A
HOH
538
3
HOH
HOH
538
A
HOH
539
3
HOH
HOH
539
A
HOH
540
3
HOH
HOH
540
A
HOH
541
3
HOH
HOH
541
A
HOH
542
3
HOH
HOH
542
A
HOH
543
3
HOH
HOH
543
A
HOH
544
3
HOH
HOH
544
A
HOH
545
3
HOH
HOH
545
A
HOH
546
3
HOH
HOH
546
A
HOH
547
3
HOH
HOH
547
A
HOH
548
3
HOH
HOH
548
A
HOH
549
3
HOH
HOH
549
A
HOH
550
3
HOH
HOH
550
A
HOH
551
3
HOH
HOH
551
A
HOH
552
3
HOH
HOH
552
A
HOH
553
3
HOH
HOH
553
A
HOH
554
3
HOH
HOH
554
A
HOH
555
3
HOH
HOH
555
A
HOH
556
3
HOH
HOH
556
A
HOH
557
3
HOH
HOH
557
A
HOH
558
3
HOH
HOH
558
A
HOH
559
3
HOH
HOH
559
A
HOH
560
3
HOH
HOH
560
A
HOH
561
3
HOH
HOH
561
A
HOH
562
3
HOH
HOH
562
A
HOH
563
3
HOH
HOH
563
A
HOH
564
3
HOH
HOH
564
A
HOH
565
3
HOH
HOH
565
A
HOH
566
3
HOH
HOH
566
A
HOH
567
3
HOH
HOH
567
A
HOH
568
3
HOH
HOH
568
A
HOH
569
3
HOH
HOH
569
A
HOH
570
3
HOH
HOH
570
A
HOH
571
3
HOH
HOH
571
A
HOH
572
3
HOH
HOH
572
A
HOH
573
3
HOH
HOH
573
A
HOH
574
3
HOH
HOH
574
A
HOH
575
3
HOH
HOH
575
A
HOH
576
3
HOH
HOH
576
A
HOH
577
3
HOH
HOH
577
A
HOH
578
3
HOH
HOH
578
A
HOH
579
3
HOH
HOH
579
A
HOH
580
3
HOH
HOH
580
A
HOH
581
3
HOH
HOH
581
A
HOH
582
3
HOH
HOH
582
A
HOH
583
3
HOH
HOH
583
A
HOH
584
3
HOH
HOH
584
A
HOH
585
3
HOH
HOH
585
A
HOH
586
3
HOH
HOH
586
A
HOH
587
3
HOH
HOH
587
A
HOH
588
3
HOH
HOH
588
A
HOH
589
3
HOH
HOH
589
A
HOH
590
3
HOH
HOH
590
A
HOH
591
3
HOH
HOH
591
A
HOH
592
3
HOH
HOH
592
A
HOH
593
3
HOH
HOH
593
A
HOH
594
3
HOH
HOH
594
A
HOH
595
3
HOH
HOH
595
A
HOH
596
3
HOH
HOH
596
A
HOH
597
3
HOH
HOH
597
A
HOH
598
3
HOH
HOH
598
A
HOH
599
3
HOH
HOH
599
A
HOH
600
3
HOH
HOH
600
A
HOH
601
3
HOH
HOH
601
A
HOH
602
3
HOH
HOH
602
A
HOH
603
3
HOH
HOH
603
A
HOH
604
3
HOH
HOH
604
A
HOH
605
3
HOH
HOH
605
A
HOH
606
3
HOH
HOH
606
A
HOH
607
3
HOH
HOH
607
A
HOH
608
3
HOH
HOH
608
A
HOH
609
3
HOH
HOH
609
A
HOH
610
3
HOH
HOH
610
A
HOH
611
3
HOH
HOH
611
A
HOH
612
3
HOH
HOH
612
A
HOH
613
3
HOH
HOH
613
A
HOH
614
3
HOH
HOH
614
A
HOH
615
3
HOH
HOH
615
A
HOH
616
3
HOH
HOH
616
A
HOH
617
3
HOH
HOH
617
A
HOH
618
3
HOH
HOH
618
A
HOH
619
3
HOH
HOH
619
A
HOH
620
3
HOH
HOH
620
A
HOH
621
3
HOH
HOH
621
A
HOH
622
3
HOH
HOH
622
A
HOH
623
3
HOH
HOH
623
A
HOH
624
3
HOH
HOH
624
A
HOH
625
3
HOH
HOH
625
A
HOH
626
3
HOH
HOH
626
A
HOH
627
3
HOH
HOH
627
A
HOH
628
3
HOH
HOH
628
A
HOH
629
3
HOH
HOH
629
A
HOH
630
3
HOH
HOH
630
A
HOH
631
3
HOH
HOH
631
A
HOH
632
3
HOH
HOH
632
A
HOH
633
3
HOH
HOH
633
A
HOH
634
3
HOH
HOH
634
A
HOH
635
3
HOH
HOH
635
A
HOH
636
3
HOH
HOH
636
A
HOH
637
3
HOH
HOH
637
A
HOH
638
3
HOH
HOH
638
A
HOH
639
3
HOH
HOH
639
A
HOH
640
3
HOH
HOH
640
A
HOH
641
3
HOH
HOH
641
A
HOH
642
3
HOH
HOH
642
A
HOH
643
3
HOH
HOH
643
A
HOH
644
3
HOH
HOH
644
A
HOH
645
3
HOH
HOH
645
A
HOH
646
3
HOH
HOH
646
A
HOH
647
3
HOH
HOH
647
A
HOH
648
3
HOH
HOH
648
A
HOH
649
3
HOH
HOH
649
A
HOH
650
3
HOH
HOH
650
A
HOH
651
3
HOH
HOH
651
A
HOH
652
3
HOH
HOH
652
A
HOH
653
3
HOH
HOH
653
A
HOH
654
3
HOH
HOH
654
A
HOH
655
3
HOH
HOH
655
A
HOH
656
3
HOH
HOH
656
A
HOH
657
3
HOH
HOH
657
A
HOH
658
3
HOH
HOH
658
A
HOH
659
3
HOH
HOH
659
A
HOH
660
3
HOH
HOH
660
A
HOH
661
3
HOH
HOH
661
A
HOH
662
3
HOH
HOH
662
A
HOH
663
3
HOH
HOH
663
A
HOH
664
3
HOH
HOH
664
A
HOH
665
3
HOH
HOH
665
A
HOH
666
3
HOH
HOH
666
A
HOH
667
3
HOH
HOH
667
A
HOH
668
3
HOH
HOH
668
A
HOH
669
3
HOH
HOH
669
A
HOH
670
3
HOH
HOH
670
A
HOH
671
3
HOH
HOH
671
A
HOH
672
3
HOH
HOH
672
A
HOH
673
3
HOH
HOH
673
A
HOH
674
3
HOH
HOH
674
A
HOH
675
3
HOH
HOH
675
A
HOH
676
3
HOH
HOH
676
A
HOH
677
3
HOH
HOH
677
A
HOH
678
3
HOH
HOH
678
A
HOH
679
3
HOH
HOH
679
A
HOH
680
3
HOH
HOH
680
A
HOH
681
3
HOH
HOH
681
A
HOH
682
3
HOH
HOH
682
A
HOH
683
3
HOH
HOH
683
A
HOH
684
3
HOH
HOH
684
A
HOH
685
3
HOH
HOH
685
A
HOH
686
3
HOH
HOH
686
A
HOH
687
3
HOH
HOH
687
A
HOH
688
3
HOH
HOH
688
A
HOH
689
3
HOH
HOH
689
A
n
1
0
A
n
2
1
A
n
3
2
A
n
4
3
A
n
5
4
A
n
6
5
A
n
7
6
A
n
8
7
A
n
9
8
A
n
10
9
A
ALA
10
n
11
ALA
10
A
PRO
11
n
12
PRO
11
A
THR
12
n
13
THR
12
A
PRO
13
n
14
PRO
13
A
VAL
14
n
15
VAL
14
A
ILE
15
n
16
ILE
15
A
LEU
16
n
17
LEU
16
A
ILE
17
n
18
ILE
17
A
VAL
18
n
19
VAL
18
A
GLU
19
n
20
GLU
19
A
PRO
20
n
21
PRO
20
A
TYR
21
n
22
TYR
21
A
GLY
22
n
23
GLY
22
A
GLY
23
n
24
GLY
23
A
SER
24
n
25
SER
24
A
ILE
25
n
26
ILE
25
A
ARG
26
n
27
ARG
26
A
GLN
27
n
28
GLN
27
A
GLN
28
n
29
GLN
28
A
ASN
29
n
30
ASN
29
A
PRO
30
n
31
PRO
30
A
ASN
31
n
32
ASN
31
A
LEU
32
n
33
LEU
32
A
PRO
33
n
34
PRO
33
A
MSE
34
n
35
MSE
34
A
VAL
35
n
36
VAL
35
A
PHE
36
n
37
PHE
36
A
TRP
37
n
38
TRP
37
A
ASP
38
n
39
ASP
38
A
ASP
39
n
40
ASP
39
A
ALA
40
n
41
ALA
40
A
ALA
41
n
42
ALA
41
A
LEU
42
n
43
LEU
42
A
THR
43
n
44
THR
43
A
ARG
44
n
45
ARG
44
A
GLY
45
n
46
GLY
45
A
ASP
46
n
47
ASP
46
A
GLY
47
n
48
GLY
47
A
ILE
48
n
49
ILE
48
A
PHE
49
n
50
PHE
49
A
GLU
50
n
51
GLU
50
A
THR
51
n
52
THR
51
A
LEU
52
n
53
LEU
52
A
LEU
53
n
54
LEU
53
A
ILE
54
n
55
ILE
54
A
ARG
55
n
56
ARG
55
A
ASP
56
n
57
ASP
56
A
GLY
57
n
58
GLY
57
A
HIS
58
n
59
HIS
58
A
ALA
59
n
60
ALA
59
A
CYS
60
n
61
CYS
60
A
ASN
61
n
62
ASN
61
A
VAL
62
n
63
VAL
62
A
ARG
63
n
64
ARG
63
A
ARG
64
n
65
ARG
64
A
HIS
65
n
66
HIS
65
A
GLY
66
n
67
GLY
66
A
GLU
67
n
68
GLU
67
A
ARG
68
n
69
ARG
68
A
PHE
69
n
70
PHE
69
A
LYS
70
n
71
LYS
70
A
ALA
71
n
72
ALA
71
A
SER
72
n
73
SER
72
A
ALA
73
n
74
ALA
73
A
ALA
74
n
75
ALA
74
A
LEU
75
n
76
LEU
75
A
LEU
76
n
77
LEU
76
A
GLY
77
n
78
GLY
77
A
LEU
78
n
79
LEU
78
A
PRO
79
n
80
PRO
79
A
GLU
80
n
81
GLU
80
A
PRO
81
n
82
PRO
81
A
ILE
82
n
83
ILE
82
A
LEU
83
n
84
LEU
83
A
GLU
84
n
85
GLU
84
A
ASP
85
n
86
ASP
85
A
TRP
86
n
87
TRP
86
A
GLU
87
n
88
GLU
87
A
LYS
88
n
89
LYS
88
A
ALA
89
n
90
ALA
89
A
THR
90
n
91
THR
90
A
GLN
91
n
92
GLN
91
A
MSE
92
n
93
MSE
92
A
GLY
93
n
94
GLY
93
A
ILE
94
n
95
ILE
94
A
GLU
95
n
96
GLU
95
A
SER
96
n
97
SER
96
A
TRP
97
n
98
TRP
97
A
TYR
98
n
99
TYR
98
A
SER
99
n
100
SER
99
A
HIS
100
n
101
HIS
100
A
PRO
101
n
102
PRO
101
A
n
103
102
A
ALA
103
n
104
ALA
103
A
GLY
104
n
105
GLY
104
A
GLU
105
n
106
GLU
105
A
ALA
106
n
107
ALA
106
A
SER
107
n
108
SER
107
A
CYS
108
n
109
CYS
108
A
THR
109
n
110
THR
109
A
TRP
110
n
111
TRP
110
A
THR
111
n
112
THR
111
A
LEU
112
n
113
LEU
112
A
SER
113
n
114
SER
113
A
ARG
114
n
115
ARG
114
A
GLY
115
n
116
GLY
115
A
ARG
116
n
117
ARG
116
A
SER
117
n
118
SER
117
A
SER
118
n
119
SER
118
A
THR
119
n
120
THR
119
A
GLY
120
n
121
GLY
120
A
LEU
121
n
122
LEU
121
A
ALA
122
n
123
ALA
122
A
SER
123
n
124
SER
123
A
GLY
124
n
125
GLY
124
A
TRP
125
n
126
TRP
125
A
LEU
126
n
127
LEU
126
A
THR
127
n
128
THR
127
A
ILE
128
n
129
ILE
128
A
THR
129
n
130
THR
129
A
PRO
130
n
131
PRO
130
A
VAL
131
n
132
VAL
131
A
SER
132
n
133
SER
132
A
SER
133
n
134
SER
133
A
ASP
134
n
135
ASP
134
A
LYS
135
n
136
LYS
135
A
LEU
136
n
137
LEU
136
A
ALA
137
n
138
ALA
137
A
GLN
138
n
139
GLN
138
A
ARG
139
n
140
ARG
139
A
GLU
140
n
141
GLU
140
A
HIS
141
n
142
HIS
141
A
GLY
142
n
143
GLY
142
A
VAL
143
n
144
VAL
143
A
SER
144
n
145
SER
144
A
VAL
145
n
146
VAL
145
A
MSE
146
n
147
MSE
146
A
THR
147
n
148
THR
147
A
SER
148
n
149
SER
148
A
SER
149
n
150
SER
149
A
ARG
150
n
151
ARG
150
A
n
152
151
A
n
153
152
A
n
154
153
A
n
155
154
A
n
156
155
A
n
157
156
A
n
158
157
A
n
159
158
A
n
160
159
A
n
161
160
A
n
162
161
A
n
163
162
A
n
164
163
A
n
165
164
A
n
166
165
A
n
167
166
A
n
168
167
A
n
169
168
A
n
170
169
A
n
171
170
A
n
172
171
A
n
173
172
A
n
174
173
A
n
175
174
A
n
176
175
A
n
177
176
A
n
178
177
A
n
179
178
A
n
180
179
A
n
181
180
A
n
182
181
A
n
183
182
A
n
184
183
A
n
185
184
A
n
186
185
A
n
187
186
A
n
188
187
A
n
189
188
A
n
190
189
A
n
191
190
A
n
192
191
A
n
193
192
A
n
194
193
A
n
195
194
A
n
196
195
A
n
197
196
A
n
198
197
A
n
199
198
A
n
200
199
A
n
201
200
A
n
202
201
A
n
203
202
A
n
204
203
A
PHE
204
n
205
PHE
204
A
ASP
205
n
206
ASP
205
A
ASP
206
n
207
ASP
206
A
VAL
207
n
208
VAL
207
A
ILE
208
n
209
ILE
208
A
PHE
209
n
210
PHE
209
A
THR
210
n
211
THR
210
A
ASP
211
n
212
ASP
211
A
GLY
212
n
213
GLY
212
A
ASP
213
n
214
ASP
213
A
ARG
214
n
215
ARG
214
A
VAL
215
n
216
VAL
215
A
LEU
216
n
217
LEU
216
A
GLU
217
n
218
GLU
217
A
GLY
218
n
219
GLY
218
A
ALA
219
n
220
ALA
219
A
THR
220
n
221
THR
220
A
SER
221
n
222
SER
221
A
THR
222
n
223
THR
222
A
VAL
223
n
224
VAL
223
A
VAL
224
n
225
VAL
224
A
SER
225
n
226
SER
225
A
PHE
226
n
227
PHE
226
A
LYS
227
n
228
LYS
227
A
GLY
228
n
229
GLY
228
A
ASP
229
n
230
ASP
229
A
LYS
230
n
231
LYS
230
A
ILE
231
n
232
ILE
231
A
ARG
232
n
233
ARG
232
A
THR
233
n
234
THR
233
A
PRO
234
n
235
PRO
234
A
SER
235
n
236
SER
235
A
PRO
236
n
237
PRO
236
A
n
238
237
A
n
239
238
A
n
240
239
A
n
241
240
A
n
242
241
A
n
243
242
A
GLY
243
n
244
GLY
243
A
THR
244
n
245
THR
244
A
THR
245
n
246
THR
245
A
GLN
246
n
247
GLN
246
A
ALA
247
n
248
ALA
247
A
ALA
248
n
249
ALA
248
A
LEU
249
n
250
LEU
249
A
PHE
250
n
251
PHE
250
A
ALA
251
n
252
ALA
251
A
HIS
252
n
253
HIS
252
A
ALA
253
n
254
ALA
253
A
THR
254
n
255
THR
254
A
GLU
255
n
256
GLU
255
A
LYS
256
n
257
LYS
256
A
GLY
257
n
258
GLY
257
A
TRP
258
n
259
TRP
258
A
ARG
259
n
260
ARG
259
A
CYS
260
n
261
CYS
260
A
LYS
261
n
262
LYS
261
A
GLU
262
n
263
GLU
262
A
LYS
263
n
264
LYS
263
A
ASP
264
n
265
ASP
264
A
LEU
265
n
266
LEU
265
A
SER
266
n
267
SER
266
A
ILE
267
n
268
ILE
267
A
ASP
268
n
269
ASP
268
A
ASP
269
n
270
ASP
269
A
LEU
270
n
271
LEU
270
A
PHE
271
n
272
PHE
271
A
GLY
272
n
273
GLY
272
A
ALA
273
n
274
ALA
273
A
ASP
274
n
275
ASP
274
A
SER
275
n
276
SER
275
A
VAL
276
n
277
VAL
276
A
TRP
277
n
278
TRP
277
A
LEU
278
n
279
LEU
278
A
VAL
279
n
280
VAL
279
A
SER
280
n
281
SER
280
A
SER
281
n
282
SER
281
A
VAL
282
n
283
VAL
282
A
ARG
283
n
284
ARG
283
A
GLY
284
n
285
GLY
284
A
PRO
285
n
286
PRO
285
A
VAL
286
n
287
VAL
286
A
ARG
287
n
288
ARG
287
A
VAL
288
n
289
VAL
288
A
THR
289
n
290
THR
289
A
ARG
290
n
291
ARG
290
A
LEU
291
n
292
LEU
291
A
ASP
292
n
293
ASP
292
A
GLY
293
n
294
GLY
293
A
HIS
294
n
295
HIS
294
A
LYS
295
n
296
LYS
295
A
LEU
296
n
297
LEU
296
A
ARG
297
n
298
ARG
297
A
LYS
298
n
299
LYS
298
A
PRO
299
n
300
PRO
299
A
ASP
300
n
301
ASP
300
A
ASN
301
n
302
ASN
301
A
GLU
302
n
303
GLU
302
A
LYS
303
n
304
LYS
303
A
GLU
304
n
305
GLU
304
A
ILE
305
n
306
ILE
305
A
LYS
306
n
307
LYS
306
A
ALA
307
n
308
ALA
307
A
LEU
308
n
309
LEU
308
A
ILE
309
n
310
ILE
309
A
THR
310
n
311
THR
310
A
LYS
311
n
312
LYS
311
A
ALA
312
n
313
ALA
312
A
LEU
313
n
314
LEU
313
A
GLY
314
n
315
GLY
314
A
1.7657
1.0792
-0.1063
1.6581
-0.0924
0.5035
-0.1551
0.0186
-0.1213
-0.2014
0.0473
-0.0408
0.0754
-0.0052
0.1078
-0.1001
0.0040
0.0097
-0.0982
0.0178
-0.0445
refined
51.3026
35.0874
-3.3230
X-RAY DIFFRACTION
A
10
A
314
X-RAY DIFFRACTION
1
{ A|10 - A|314 }
author_and_software_defined_assembly
PISA
2
dimeric
gel filtration
light scattering
2170
-8
24170
A
MSE
34
SELENOMETHIONINE
A
MSE
35
MET
A
MSE
92
SELENOMETHIONINE
A
MSE
93
MET
A
MSE
146
SELENOMETHIONINE
A
MSE
147
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
2_655
-x+1,y,-z
crystal symmetry operation
139.8990000000
0.0000000000
0.0000000000
A
O
ARG
26
A
O
ARG
27
A
N
ILE
17
A
N
ILE
18
A
N
VAL
14
A
N
VAL
15
A
O
ILE
128
A
O
ILE
129
A
O
THR
129
A
O
THR
130
A
N
SER
107
A
N
SER
108
A
O
CYS
108
A
O
CYS
109
A
N
LEU
52
A
N
LEU
53
A
N
ARG
55
A
N
ARG
56
A
O
HIS
58
A
O
HIS
59
A
O
LEU
216
A
O
LEU
217
A
N
PHE
209
A
N
PHE
210
A
O
ILE
208
A
O
ILE
209
A
N
MSE
146
A
N
MSE
147
A
N
VAL
145
A
N
VAL
146
A
O
ARG
290
A
O
ARG
291
A
O
VAL
288
A
O
VAL
289
A
N
VAL
276
A
N
VAL
277
A
O
TRP
277
A
O
TRP
278
A
N
VAL
224
A
N
VAL
225
A
N
SER
225
A
N
SER
226
A
O
ARG
232
A
O
ARG
233
A
N
THR
233
A
N
THR
234
A
O
LYS
263
A
O
LYS
264
1
A
C
PRO
101
A
C
PRO
102
1
Y
1
A
O
PRO
101
A
O
PRO
102
1
Y
1
A
OG
SER
144
A
OG
SER
145
1
Y
1
A
CG1
VAL
145
A
CG1
VAL
146
1
Y
1
A
CG2
VAL
145
A
CG2
VAL
146
1
Y
1
A
CG
ARG
150
A
CG
ARG
151
1
Y
1
A
CD
ARG
150
A
CD
ARG
151
1
Y
1
A
NE
ARG
150
A
NE
ARG
151
1
Y
1
A
CZ
ARG
150
A
CZ
ARG
151
1
Y
1
A
NH1
ARG
150
A
NH1
ARG
151
1
Y
1
A
NH2
ARG
150
A
NH2
ARG
151
1
Y
1
A
CG
PHE
204
A
CG
PHE
205
1
Y
1
A
CD1
PHE
204
A
CD1
PHE
205
1
Y
1
A
CD2
PHE
204
A
CD2
PHE
205
1
Y
1
A
CE1
PHE
204
A
CE1
PHE
205
1
Y
1
A
CE2
PHE
204
A
CE2
PHE
205
1
Y
1
A
CZ
PHE
204
A
CZ
PHE
205
1
Y
1
A
CG
ASP
205
A
CG
ASP
206
1
Y
1
A
OD1
ASP
205
A
OD1
ASP
206
1
Y
1
A
OD2
ASP
205
A
OD2
ASP
206
1
Y
1
A
CG
PHE
209
A
CG
PHE
210
1
Y
1
A
CD1
PHE
209
A
CD1
PHE
210
1
Y
1
A
CD2
PHE
209
A
CD2
PHE
210
1
Y
1
A
CE1
PHE
209
A
CE1
PHE
210
1
Y
1
A
CE2
PHE
209
A
CE2
PHE
210
1
Y
1
A
CZ
PHE
209
A
CZ
PHE
210
1
Y
1
A
CG
ASP
213
A
CG
ASP
214
1
Y
1
A
OD1
ASP
213
A
OD1
ASP
214
1
Y
1
A
OD2
ASP
213
A
OD2
ASP
214
1
Y
1
A
CG
GLU
217
A
CG
GLU
218
1
Y
1
A
CD
GLU
217
A
CD
GLU
218
1
Y
1
A
OE1
GLU
217
A
OE1
GLU
218
1
Y
1
A
OE2
GLU
217
A
OE2
GLU
218
1
Y
1
A
CG
HIS
294
A
CG
HIS
295
1
Y
1
A
ND1
HIS
294
A
ND1
HIS
295
1
Y
1
A
CD2
HIS
294
A
CD2
HIS
295
1
Y
1
A
CE1
HIS
294
A
CE1
HIS
295
1
Y
1
A
NE2
HIS
294
A
NE2
HIS
295
1
Y
1
A
CG
LYS
295
A
CG
LYS
296
1
Y
1
A
CD
LYS
295
A
CD
LYS
296
1
Y
1
A
CE
LYS
295
A
CE
LYS
296
1
Y
1
A
NZ
LYS
295
A
NZ
LYS
296
1
Y
1
A
CG
ARG
297
A
CG
ARG
298
1
Y
1
A
CD
ARG
297
A
CD
ARG
298
1
Y
1
A
NE
ARG
297
A
NE
ARG
298
1
Y
1
A
CZ
ARG
297
A
CZ
ARG
298
1
Y
1
A
NH1
ARG
297
A
NH1
ARG
298
1
Y
1
A
NH2
ARG
297
A
NH2
ARG
298
1
Y
1
A
CG
LYS
303
A
CG
LYS
304
1
Y
1
A
CD
LYS
303
A
CD
LYS
304
1
Y
1
A
CE
LYS
303
A
CE
LYS
304
1
Y
1
A
NZ
LYS
303
A
NZ
LYS
304
1
Y
1
A
GLY
0
A
GLY
1
1
Y
1
A
MSE
1
A
MSE
2
1
Y
1
A
ALA
2
A
ALA
3
1
Y
1
A
LEU
3
A
LEU
4
1
Y
1
A
GLU
4
A
GLU
5
1
Y
1
A
PRO
5
A
PRO
6
1
Y
1
A
GLN
6
A
GLN
7
1
Y
1
A
ILE
7
A
ILE
8
1
Y
1
A
LYS
8
A
LYS
9
1
Y
1
A
SER
9
A
SER
10
1
Y
1
A
ASN
102
A
ASN
103
1
Y
1
A
GLY
151
A
GLY
152
1
Y
1
A
TYR
152
A
TYR
153
1
Y
1
A
SER
153
A
SER
154
1
Y
1
A
ILE
154
A
ILE
155
1
Y
1
A
ASP
155
A
ASP
156
1
Y
1
A
THR
156
A
THR
157
1
Y
1
A
GLY
157
A
GLY
158
1
Y
1
A
LEU
158
A
LEU
159
1
Y
1
A
PRO
159
A
PRO
160
1
Y
1
A
GLY
160
A
GLY
161
1
Y
1
A
ILE
161
A
ILE
162
1
Y
1
A
GLY
162
A
GLY
163
1
Y
1
A
LYS
163
A
LYS
164
1
Y
1
A
ALA
164
A
ALA
165
1
Y
1
A
THR
165
A
THR
166
1
Y
1
A
ARG
166
A
ARG
167
1
Y
1
A
GLY
167
A
GLY
168
1
Y
1
A
GLU
168
A
GLU
169
1
Y
1
A
LEU
169
A
LEU
170
1
Y
1
A
SER
170
A
SER
171
1
Y
1
A
LYS
171
A
LYS
172
1
Y
1
A
VAL
172
A
VAL
173
1
Y
1
A
GLU
173
A
GLU
174
1
Y
1
A
ARG
174
A
ARG
175
1
Y
1
A
THR
175
A
THR
176
1
Y
1
A
PRO
176
A
PRO
177
1
Y
1
A
ALA
177
A
ALA
178
1
Y
1
A
PRO
178
A
PRO
179
1
Y
1
A
TRP
179
A
TRP
180
1
Y
1
A
LEU
180
A
LEU
181
1
Y
1
A
THR
181
A
THR
182
1
Y
1
A
VAL
182
A
VAL
183
1
Y
1
A
GLY
183
A
GLY
184
1
Y
1
A
ALA
184
A
ALA
185
1
Y
1
A
LYS
185
A
LYS
186
1
Y
1
A
THR
186
A
THR
187
1
Y
1
A
LEU
187
A
LEU
188
1
Y
1
A
ALA
188
A
ALA
189
1
Y
1
A
TYR
189
A
TYR
190
1
Y
1
A
ALA
190
A
ALA
191
1
Y
1
A
ALA
191
A
ALA
192
1
Y
1
A
ASN
192
A
ASN
193
1
Y
1
A
MSE
193
A
MSE
194
1
Y
1
A
ALA
194
A
ALA
195
1
Y
1
A
ALA
195
A
ALA
196
1
Y
1
A
LEU
196
A
LEU
197
1
Y
1
A
ARG
197
A
ARG
198
1
Y
1
A
TYR
198
A
TYR
199
1
Y
1
A
ALA
199
A
ALA
200
1
Y
1
A
LYS
200
A
LYS
201
1
Y
1
A
SER
201
A
SER
202
1
Y
1
A
ASN
202
A
ASN
203
1
Y
1
A
GLY
203
A
GLY
204
1
Y
1
A
GLY
237
A
GLY
238
1
Y
1
A
GLY
238
A
GLY
239
1
Y
1
A
ASP
239
A
ASP
240
1
Y
1
A
ILE
240
A
ILE
241
1
Y
1
A
LEU
241
A
LEU
242
1
Y
1
A
PRO
242
A
PRO
243
1
Y
1
A
MSE
34
-130.55
-36.97
1
A
ASP
56
39.68
59.42
1
A
ASP
205
-157.13
82.49
1
A
LEU
216
-103.44
-82.81
1
A
THR
220
-143.09
31.82
1
A
ASP
292
66.93
-17.56
1
A
HIS
294
61.67
137.01
1
A
LEU
296
-85.39
39.90
1
A
ARG
297
56.03
-159.56
1
A
LYS
298
-160.32
116.63
111.640
38.1043
16.990
6.6766
0.0000
-0.3661
-7.1797
0.0000
0.5031
0.9300
0.9227
1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 3. 1,2 ETHANEDIOL (EDO) FROM THE CRYOPROTECTANT HAS BEEN MODELED IN THE SOLVENT STRUCTURE. 4. RAMACHANDRAN OUTLIER AT RESIDUE 294 IS IN A REGION OF SUB-OPTIMAL ELECTRON DENSITY. 5. THE STRUCTURE HAS SEVERAL UNMODELED REGIONS WHICH HAVE ELECTRON DENSITY THAT COULD NOT BE RELIABLY INTERPRETED. IN ADDITION, THERE ARE THREE REGIONS OF SUB-OPTIMAL MODEL FIT IN WHICH THE MOST STRUCTURALLY SIMILAR PROTEIN (AS DETERMINED BY THE PROGRAM SSM), PDB ID 5DAA, WAS USED TO GUIDE THE MODELING. THESE INCLUDE RESIDUES 143-150, 204-221 AND 291-295. 6. THE REFINEMENT WAS RESTRAINED WITH THE MAD PHASES.
0.2529
0.2309
0.2320
1.6000
28.757
1737
34490
5.0400
1.000
0.370
RANDOM
1
THROUGHOUT
0.000
MAD
1.6000
28.757
187
2033
12
0
1834
956
SINUSOIDAL
2.000
41
HARMONIC
2.000
315
HARMONIC
5.000
1996
HARMONIC
20.000
274
SEMIHARMONIC
5.000
2391
SEMIHARMONIC
4.000
0.010
1996
HARMONIC
2.000
1.030
2729
HARMONIC
2.000
3.330
2.520
0.2314
0.2342
0.2340
1.6500
111
2535
2646
17
4.2000
26.711
1.60
28.757
3SNO
34491
-3.000
0.027
1
12.530
92.400
0.456
1.600
1.660
1.7
7588
5736
1
79.500
0.377
1.660
1.720
2.0
7739
5743
1
91.500
0.233
1.720
1.800
3.0
8879
6601
1
92.200
0.145
1.800
1.900
4.6
9136
6797
1
93.300
0.076
1.900
2.020
7.7
8778
6568
1
93.500
0.050
2.020
2.170
11.2
8305
6240
1
94.400
0.035
2.170
2.390
15.0
8870
6684
1
95.300
0.027
2.390
2.730
19.7
8591
6497
1
95.200
0.019
2.730
3.440
26.4
8912
6743
1
96.200
0.018
3.440
31.3
8533
6515
1
93.000
model building
D.C. & J.S. Richardson lab
molprobity@kinemage.biochem.duke.edu
http://kinemage.biochem.duke.edu/molprobity/
MolProbity
package
3beta29
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
phasing
George M. Sheldrick
gsheldr@shelx.uni-ac.gwdg.de
Fortran_77
http://shelx.uni-ac.gwdg.de/SHELX/
SHELX
package
phasing
Eric de La Fortelle
sharp-develop@globalphasing.com
http://www.globalphasing.com/sharp/
SHARP
package
data scaling
Wolfgang Kabsch
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html
XSCALE
package
January 30, 2009
refinement
Gerard Bricogne
buster-develop@GlobalPhasing.com
http://www.globalphasing.com/buster/
BUSTER-TNT
program
2.8.0
data reduction
XDS
phasing
SHELXD
refinement
BUSTER
2.8.0
Crystal structure of a putative aminotransferase (NCgl2491) from Corynebacterium glutamicum ATCC 13032 at 1.60 A resolution
1
N
N
2
N
N
2
N
N
2
N
N
3
N
N
CRYSTAL PACKING ANALYSIS AND SIZE-EXCLUSION CHROMATOGRAPHY IN COMBINATION WITH STATIC LIGHT SCATTERING SUPPORT THE ASSIGNMENT OF A DIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION.
A
ASN
61
A
ASN
62
HELX_P
A
GLY
77
A
GLY
78
1
1
17
A
ILE
82
A
ILE
83
HELX_P
A
SER
99
A
SER
100
1
2
18
A
SER
132
A
SER
133
HELX_P
A
GLY
142
A
GLY
143
1
3
11
A
GLY
243
A
GLY
244
HELX_P
A
LYS
256
A
LYS
257
1
4
14
A
SER
266
A
SER
267
HELX_P
A
ALA
273
A
ALA
274
1
5
8
A
ASN
301
A
ASN
302
HELX_P
A
LEU
313
A
LEU
314
1
6
13
covale
1.320
both
A
PRO
33
A
C
PRO
34
1_555
A
MSE
34
A
N
MSE
35
1_555
covale
1.344
both
A
MSE
34
A
C
MSE
35
1_555
A
VAL
35
A
N
VAL
36
1_555
covale
1.343
both
A
GLN
91
A
C
GLN
92
1_555
A
MSE
92
A
N
MSE
93
1_555
covale
1.344
both
A
MSE
92
A
C
MSE
93
1_555
A
GLY
93
A
N
GLY
94
1_555
covale
1.347
both
A
VAL
145
A
C
VAL
146
1_555
A
MSE
146
A
N
MSE
147
1_555
covale
1.329
both
A
MSE
146
A
C
MSE
147
1_555
A
THR
147
A
N
THR
148
1_555
TRANSFERASE
D-aminoacid aminotransferase-like PLP-dependent enzymes, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, TRANSFERASE
A
PHE
204
A
PHE
205
1
A
ASP
205
A
ASP
206
-0.72
Q8NMJ3_CORGL
UNP
1
1
Q8NMJ3
MALEPQIKSAPTPVILIVEPYGGSIRQQNPNLPMVFWDDAALTRGDGIFETLLIRDGHACNVRRHGERFKASAALLGLPE
PILEDWEKATQMGIESWYSHPNAGEASCTWTLSRGRSSTGLASGWLTITPVSSDKLAQREHGVSVMTSSRGYSIDTGLPG
IGKATRGELSKVERTPAPWLTVGAKTLAYAANMAALRYAKSNGFDDVIFTDGDRVLEGATSTVVSFKGDKIRTPSPGGDI
LPGTTQAALFAHATEKGWRCKEKDLSIDDLFGADSVWLVSSVRGPVRVTRLDGHKLRKPDNEKEIKALITKALG
1
314
3SNO
1
314
Q8NMJ3
A
1
2
315
1
expression tag
GLY
0
3SNO
A
Q8NMJ3
UNP
1
6
8
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
A
ILE
25
A
ILE
26
A
GLN
28
A
GLN
29
A
VAL
14
A
VAL
15
A
VAL
18
A
VAL
19
A
SER
123
A
SER
124
A
PRO
130
A
PRO
131
A
ALA
106
A
ALA
107
A
SER
113
A
SER
114
A
GLY
47
A
GLY
48
A
ARG
55
A
ARG
56
A
HIS
58
A
HIS
59
A
ALA
59
A
ALA
60
A
ARG
214
A
ARG
215
A
GLY
218
A
GLY
219
A
ASP
205
A
ASP
206
A
ASP
211
A
ASP
212
A
VAL
143
A
VAL
144
A
SER
149
A
SER
150
A
GLY
284
A
GLY
285
A
LEU
291
A
LEU
292
A
SER
275
A
SER
276
A
SER
280
A
SER
281
A
THR
222
A
THR
223
A
LYS
227
A
LYS
228
A
LYS
230
A
LYS
231
A
PRO
234
A
PRO
235
A
ARG
259
A
ARG
260
A
LYS
263
A
LYS
264
BINDING SITE FOR RESIDUE EDO A 500
A
EDO
500
Software
6
BINDING SITE FOR RESIDUE EDO A 501
A
EDO
501
Software
4
BINDING SITE FOR RESIDUE EDO A 502
A
EDO
502
Software
2
A
ASP
229
A
ASP
230
6
1_555
A
LYS
256
A
LYS
257
6
1_555
A
GLY
257
A
GLY
258
6
1_555
A
TRP
258
A
TRP
259
6
1_555
A
EDO
501
C
EDO
6
4_545
A
HOH
669
E
HOH
6
1_555
A
GLU
87
A
GLU
88
4
1_555
A
LYS
88
A
LYS
89
4
1_555
A
GLN
91
A
GLN
92
4
1_555
A
EDO
500
B
EDO
4
4_555
A
MSE
34
A
MSE
35
2
1_555
A
HOH
516
E
HOH
2
1_555
5
C 1 2 1