0.023462 0.000000 0.000000 0.000000 0.023462 0.000000 0.000000 0.000000 0.005450 0.000000 0.000000 0.000000 Rajakumara, E. Patel, D.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.000 90.000 90.000 42.622 42.622 183.489 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H21 N2 O2 1 189.275 n N-TRIMETHYLLYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N C N 234 N C N 235 N C N 236 N N N 237 N C N 238 N O N 239 N O N 240 N C N 241 N C N 242 N C N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N N N 265 S C N 266 N C N 267 N O N 268 N C N 269 N C N 270 N S N 271 N C N 272 N O N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N N N 285 S C N 286 N C N 287 N O N 288 N C Y 289 N C Y 290 N C Y 291 N C Y 292 N C Y 293 N C Y 294 N C N 295 N O N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N N N 308 S C N 309 N C N 310 N O N 311 N C N 312 N C N 313 N C N 314 N O N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N N N 325 S C N 326 N C N 327 N O N 328 N C N 329 N O N 330 N O N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N N N 339 S C N 340 N C N 341 N O N 342 R C N 343 N O N 344 N C N 345 N O N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N N N 356 S C N 357 N C N 358 N O N 359 N C Y 360 N C Y 361 N C Y 362 N C Y 363 N N Y 364 N C Y 365 N C Y 366 N C Y 367 N C Y 368 N C N 369 N O N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N N N 383 S C N 384 N C N 385 N O N 386 N C Y 387 N C Y 388 N C Y 389 N C Y 390 N C Y 391 N C Y 392 N C N 393 N O N 394 N O N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N N N 407 S C N 408 N C N 409 N O N 410 N C N 411 N C N 412 N C N 413 N O N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N ZN N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N doub N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N doub N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N doub N 277 N sing N 278 N sing N 279 N sing N 280 N sing Y 281 N doub Y 282 N sing Y 283 N sing N 284 N sing Y 285 N doub N 286 N sing Y 287 N doub N 288 N sing Y 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N doub N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N doub N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N doub N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N doub N 346 N sing N 347 N sing N 348 N sing N 349 N sing Y 350 N doub Y 351 N sing Y 352 N sing N 353 N sing Y 354 N doub Y 355 N sing Y 356 N sing N 357 N sing Y 358 N sing Y 359 N doub N 360 N sing Y 361 N doub N 362 N sing Y 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N doub N 374 N sing N 375 N sing N 376 N sing N 377 N sing Y 378 N doub Y 379 N sing Y 380 N sing N 381 N sing Y 382 N doub N 383 N sing Y 384 N doub N 385 N sing Y 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N doub N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing US Mol.Cell MOCEFL 2168 1097-2765 43 275 284 10.1016/j.molcel.2011.07.006 21777816 PHD Finger Recognition of Unmodified Histone H3R2 Links UHRF1 to Regulation of Euchromatic Gene Expression. 2011 10.2210/pdb3sow/pdb pdb_00003sow 100 1 Mirrors CCD ADSC QUANTUM 315 Cryo-cooled double Si(111) double crystal SINGLE WAVELENGTH M x-ray 1 0.97918 1.0 24-ID-C APS 0.97918 SYNCHROTRON APS BEAMLINE 24-ID-C 7920.976 E3 ubiquitin-protein ligase UHRF1 6.3.2.- UHRF1 (UNP Residues 298-367) 2 man polymer 1105.334 Histone H3 2 syn polymer 65.409 ZINC ION 8 syn non-polymer 18.015 water 47 nat water Inverted CCAAT box-binding protein of 90 kDa, Nuclear protein 95, Nuclear zinc finger protein Np95, HuNp95, RING finger protein 106, Transcription factor ICBP90, Ubiquitin-like PHD and RING finger domain-containing protein 1, Ubiquitin-like-containing PHD and RING finger domains protein 1 no no SGPSCKHCKDDVNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRNDA SGPSCKHCKDDVNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRNDA A,B polypeptide(L) no yes ART(M3L)QTARK ARTKQTARK C,D polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human PreScission protease cleavable N-terminal GST tag sample ICBP90, NP95, RNF106, UHRF1 9606 Homo sapiens 469008 Escherichia coli Rosetta2 (DE3) Plasmid pGEX-6P-1 1 2.31 46.71 VAPOR DIFFUSION, SITTING DROP 6.5 30% w/v polyethylene glycol 8,000, 0.2 M sodium acetate trihydrate, 0.1 M sodium cacodylate trihydrate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K 291 software chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_site repository Initial release Refinement description Data collection Database references Derived calculations Refinement description 1 0 2011-08-03 1 1 2017-11-08 1 2 2023-09-13 _software.classification _software.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Structure of UHRF1 protein in complex with histone peptide Structure of UHRF1 protein in the free form RCSB Y RCSB 2011-06-30 REL REL ZN ZINC ION HOH water Chemically synthesized 9606 Homo sapiens sample 3SOU PDB entry 3SOU CHAIN A PDB experimental model ZN 1 3 ZN ZN 1 A ZN 2 3 ZN ZN 2 A ZN 3 3 ZN ZN 3 A ZN 7 3 ZN ZN 7 A ZN 4 3 ZN ZN 4 B ZN 5 3 ZN ZN 5 B ZN 6 3 ZN ZN 6 B ZN 8 3 ZN ZN 8 B HOH 5 4 HOH HOH 5 A HOH 6 4 HOH HOH 6 A HOH 8 4 HOH HOH 8 A HOH 9 4 HOH HOH 9 A HOH 12 4 HOH HOH 12 A HOH 13 4 HOH HOH 13 A HOH 15 4 HOH HOH 15 A HOH 17 4 HOH HOH 17 A HOH 19 4 HOH HOH 19 A HOH 20 4 HOH HOH 20 A HOH 23 4 HOH HOH 23 A HOH 24 4 HOH HOH 24 A HOH 25 4 HOH HOH 25 A HOH 27 4 HOH HOH 27 A HOH 29 4 HOH HOH 29 A HOH 34 4 HOH HOH 34 A HOH 36 4 HOH HOH 36 A HOH 39 4 HOH HOH 39 A HOH 40 4 HOH HOH 40 A HOH 41 4 HOH HOH 41 A HOH 44 4 HOH HOH 44 A HOH 45 4 HOH HOH 45 A HOH 46 4 HOH HOH 46 A HOH 1 4 HOH HOH 381 A HOH 3 4 HOH HOH 382 A HOH 2 4 HOH HOH 2 B HOH 7 4 HOH HOH 7 B HOH 10 4 HOH HOH 10 B HOH 11 4 HOH HOH 11 B HOH 14 4 HOH HOH 14 B HOH 16 4 HOH HOH 16 B HOH 18 4 HOH HOH 18 B HOH 21 4 HOH HOH 21 B HOH 22 4 HOH HOH 22 B HOH 26 4 HOH HOH 26 B HOH 28 4 HOH HOH 28 B HOH 30 4 HOH HOH 30 B HOH 32 4 HOH HOH 32 B HOH 33 4 HOH HOH 33 B HOH 35 4 HOH HOH 35 B HOH 37 4 HOH HOH 37 B HOH 38 4 HOH HOH 38 B HOH 42 4 HOH HOH 42 B HOH 43 4 HOH HOH 43 B HOH 47 4 HOH HOH 47 B HOH 4 4 HOH HOH 381 B HOH 31 4 HOH HOH 31 C n 1 311 A n 2 312 A PRO 313 n 3 PRO 313 A SER 314 n 4 SER 314 A CYS 315 n 5 CYS 315 A LYS 316 n 6 LYS 316 A HIS 317 n 7 HIS 317 A CYS 318 n 8 CYS 318 A LYS 319 n 9 LYS 319 A ASP 320 n 10 ASP 320 A ASP 321 n 11 ASP 321 A VAL 322 n 12 VAL 322 A ASN 323 n 13 ASN 323 A ARG 324 n 14 ARG 324 A LEU 325 n 15 LEU 325 A CYS 326 n 16 CYS 326 A ARG 327 n 17 ARG 327 A VAL 328 n 18 VAL 328 A CYS 329 n 19 CYS 329 A ALA 330 n 20 ALA 330 A CYS 331 n 21 CYS 331 A HIS 332 n 22 HIS 332 A LEU 333 n 23 LEU 333 A CYS 334 n 24 CYS 334 A GLY 335 n 25 GLY 335 A GLY 336 n 26 GLY 336 A ARG 337 n 27 ARG 337 A GLN 338 n 28 GLN 338 A ASP 339 n 29 ASP 339 A PRO 340 n 30 PRO 340 A ASP 341 n 31 ASP 341 A LYS 342 n 32 LYS 342 A GLN 343 n 33 GLN 343 A LEU 344 n 34 LEU 344 A MET 345 n 35 MET 345 A CYS 346 n 36 CYS 346 A ASP 347 n 37 ASP 347 A GLU 348 n 38 GLU 348 A CYS 349 n 39 CYS 349 A ASP 350 n 40 ASP 350 A MET 351 n 41 MET 351 A ALA 352 n 42 ALA 352 A PHE 353 n 43 PHE 353 A HIS 354 n 44 HIS 354 A ILE 355 n 45 ILE 355 A TYR 356 n 46 TYR 356 A CYS 357 n 47 CYS 357 A LEU 358 n 48 LEU 358 A ASP 359 n 49 ASP 359 A PRO 360 n 50 PRO 360 A PRO 361 n 51 PRO 361 A LEU 362 n 52 LEU 362 A SER 363 n 53 SER 363 A SER 364 n 54 SER 364 A VAL 365 n 55 VAL 365 A PRO 366 n 56 PRO 366 A SER 367 n 57 SER 367 A GLU 368 n 58 GLU 368 A ASP 369 n 59 ASP 369 A GLU 370 n 60 GLU 370 A TRP 371 n 61 TRP 371 A TYR 372 n 62 TYR 372 A CYS 373 n 63 CYS 373 A PRO 374 n 64 PRO 374 A GLU 375 n 65 GLU 375 A CYS 376 n 66 CYS 376 A ARG 377 n 67 ARG 377 A ASN 378 n 68 ASN 378 A ASP 379 n 69 ASP 379 A n 70 380 A n 1 311 B n 2 312 B PRO 313 n 3 PRO 313 B SER 314 n 4 SER 314 B CYS 315 n 5 CYS 315 B LYS 316 n 6 LYS 316 B HIS 317 n 7 HIS 317 B CYS 318 n 8 CYS 318 B LYS 319 n 9 LYS 319 B ASP 320 n 10 ASP 320 B ASP 321 n 11 ASP 321 B VAL 322 n 12 VAL 322 B ASN 323 n 13 ASN 323 B ARG 324 n 14 ARG 324 B LEU 325 n 15 LEU 325 B CYS 326 n 16 CYS 326 B ARG 327 n 17 ARG 327 B VAL 328 n 18 VAL 328 B CYS 329 n 19 CYS 329 B ALA 330 n 20 ALA 330 B CYS 331 n 21 CYS 331 B HIS 332 n 22 HIS 332 B LEU 333 n 23 LEU 333 B CYS 334 n 24 CYS 334 B GLY 335 n 25 GLY 335 B GLY 336 n 26 GLY 336 B ARG 337 n 27 ARG 337 B GLN 338 n 28 GLN 338 B ASP 339 n 29 ASP 339 B PRO 340 n 30 PRO 340 B ASP 341 n 31 ASP 341 B LYS 342 n 32 LYS 342 B GLN 343 n 33 GLN 343 B LEU 344 n 34 LEU 344 B MET 345 n 35 MET 345 B CYS 346 n 36 CYS 346 B ASP 347 n 37 ASP 347 B GLU 348 n 38 GLU 348 B CYS 349 n 39 CYS 349 B ASP 350 n 40 ASP 350 B MET 351 n 41 MET 351 B ALA 352 n 42 ALA 352 B PHE 353 n 43 PHE 353 B HIS 354 n 44 HIS 354 B ILE 355 n 45 ILE 355 B TYR 356 n 46 TYR 356 B CYS 357 n 47 CYS 357 B LEU 358 n 48 LEU 358 B ASP 359 n 49 ASP 359 B PRO 360 n 50 PRO 360 B PRO 361 n 51 PRO 361 B LEU 362 n 52 LEU 362 B SER 363 n 53 SER 363 B SER 364 n 54 SER 364 B VAL 365 n 55 VAL 365 B PRO 366 n 56 PRO 366 B SER 367 n 57 SER 367 B GLU 368 n 58 GLU 368 B ASP 369 n 59 ASP 369 B GLU 370 n 60 GLU 370 B TRP 371 n 61 TRP 371 B TYR 372 n 62 TYR 372 B CYS 373 n 63 CYS 373 B PRO 374 n 64 PRO 374 B GLU 375 n 65 GLU 375 B CYS 376 n 66 CYS 376 B ARG 377 n 67 ARG 377 B n 68 378 B n 69 379 B n 70 380 B ALA 1 n 1 ALA 1 C ARG 2 n 2 ARG 2 C THR 3 n 3 THR 3 C M3L 4 n 4 M3L 4 C GLN 5 n 5 GLN 5 C THR 6 n 6 THR 6 C n 7 7 C n 8 8 C n 9 9 C ALA 1 n 1 ALA 1 D ARG 2 n 2 ARG 2 D THR 3 n 3 THR 3 D M3L 4 n 4 M3L 4 D GLN 5 n 5 GLN 5 D THR 6 n 6 THR 6 D n 7 7 D n 8 8 D n 9 9 D author_and_software_defined_assembly PISA 2 dimeric author_and_software_defined_assembly PISA 2 dimeric software_defined_assembly PISA 4 tetrameric 1020 -34 5060 980 -32 4920 2780 -96 9190 A CYS 315 A SG CYS 5 1_555 A ZN 1 E ZN ZN 1_555 A CYS 318 A SG CYS 8 1_555 110.6 A CYS 315 A SG CYS 5 1_555 A ZN 1 E ZN ZN 1_555 A CYS 326 A SG CYS 16 1_555 111.6 A CYS 318 A SG CYS 8 1_555 A ZN 1 E ZN ZN 1_555 A CYS 326 A SG CYS 16 1_555 112.6 A CYS 315 A SG CYS 5 1_555 A ZN 1 E ZN ZN 1_555 A CYS 329 A SG CYS 19 1_555 108.0 A CYS 318 A SG CYS 8 1_555 A ZN 1 E ZN ZN 1_555 A CYS 329 A SG CYS 19 1_555 100.3 A CYS 326 A SG CYS 16 1_555 A ZN 1 E ZN ZN 1_555 A CYS 329 A SG CYS 19 1_555 113.2 A CYS 331 A SG CYS 21 1_555 A ZN 2 F ZN ZN 1_555 A CYS 334 A SG CYS 24 1_555 109.7 A CYS 331 A SG CYS 21 1_555 A ZN 2 F ZN ZN 1_555 A HIS 354 A ND1 HIS 44 1_555 100.9 A CYS 334 A SG CYS 24 1_555 A ZN 2 F ZN ZN 1_555 A HIS 354 A ND1 HIS 44 1_555 98.1 A CYS 331 A SG CYS 21 1_555 A ZN 2 F ZN ZN 1_555 A CYS 357 A SG CYS 47 1_555 124.3 A CYS 334 A SG CYS 24 1_555 A ZN 2 F ZN ZN 1_555 A CYS 357 A SG CYS 47 1_555 107.5 A HIS 354 A ND1 HIS 44 1_555 A ZN 2 F ZN ZN 1_555 A CYS 357 A SG CYS 47 1_555 113.2 A CYS 346 A SG CYS 36 1_555 A ZN 3 G ZN ZN 1_555 A CYS 349 A SG CYS 39 1_555 105.9 A CYS 346 A SG CYS 36 1_555 A ZN 3 G ZN ZN 1_555 A CYS 373 A SG CYS 63 1_555 109.0 A CYS 349 A SG CYS 39 1_555 A ZN 3 G ZN ZN 1_555 A CYS 373 A SG CYS 63 1_555 114.3 A CYS 346 A SG CYS 36 1_555 A ZN 3 G ZN ZN 1_555 A CYS 376 A SG CYS 66 1_555 109.1 A CYS 349 A SG CYS 39 1_555 A ZN 3 G ZN ZN 1_555 A CYS 376 A SG CYS 66 1_555 111.9 A CYS 373 A SG CYS 63 1_555 A ZN 3 G ZN ZN 1_555 A CYS 376 A SG CYS 66 1_555 106.6 A HIS 332 A NE2 HIS 22 1_555 A ZN 7 H ZN ZN 1_555 A GLU 375 A OE2 GLU 65 1_555 105.9 A HIS 332 A NE2 HIS 22 1_555 A ZN 7 H ZN ZN 1_555 B HIS 317 B ND1 HIS 7 1_555 109.1 A GLU 375 A OE2 GLU 65 1_555 A ZN 7 H ZN ZN 1_555 B HIS 317 B ND1 HIS 7 1_555 124.2 A HIS 317 A ND1 HIS 7 1_555 B ZN 8 L ZN ZN 1_555 B HIS 332 B NE2 HIS 22 1_555 111.4 A HIS 317 A ND1 HIS 7 1_555 B ZN 8 L ZN ZN 1_555 B GLU 375 B OE2 GLU 65 1_555 117.0 B HIS 332 B NE2 HIS 22 1_555 B ZN 8 L ZN ZN 1_555 B GLU 375 B OE2 GLU 65 1_555 108.6 B CYS 331 B SG CYS 21 1_555 B ZN 4 I ZN ZN 1_555 B CYS 334 B SG CYS 24 1_555 109.6 B CYS 331 B SG CYS 21 1_555 B ZN 4 I ZN ZN 1_555 B HIS 354 B ND1 HIS 44 1_555 100.1 B CYS 334 B SG CYS 24 1_555 B ZN 4 I ZN ZN 1_555 B HIS 354 B ND1 HIS 44 1_555 97.1 B CYS 331 B SG CYS 21 1_555 B ZN 4 I ZN ZN 1_555 B CYS 357 B SG CYS 47 1_555 122.7 B CYS 334 B SG CYS 24 1_555 B ZN 4 I ZN ZN 1_555 B CYS 357 B SG CYS 47 1_555 110.1 B HIS 354 B ND1 HIS 44 1_555 B ZN 4 I ZN ZN 1_555 B CYS 357 B SG CYS 47 1_555 114.0 B CYS 315 B SG CYS 5 1_555 B ZN 5 J ZN ZN 1_555 B CYS 318 B SG CYS 8 1_555 110.5 B CYS 315 B SG CYS 5 1_555 B ZN 5 J ZN ZN 1_555 B CYS 326 B SG CYS 16 1_555 114.2 B CYS 318 B SG CYS 8 1_555 B ZN 5 J ZN ZN 1_555 B CYS 326 B SG CYS 16 1_555 112.2 B CYS 315 B SG CYS 5 1_555 B ZN 5 J ZN ZN 1_555 B CYS 329 B SG CYS 19 1_555 107.6 B CYS 318 B SG CYS 8 1_555 B ZN 5 J ZN ZN 1_555 B CYS 329 B SG CYS 19 1_555 99.9 B CYS 326 B SG CYS 16 1_555 B ZN 5 J ZN ZN 1_555 B CYS 329 B SG CYS 19 1_555 111.3 B CYS 346 B SG CYS 36 1_555 B ZN 6 K ZN ZN 1_555 B CYS 349 B SG CYS 39 1_555 103.2 B CYS 346 B SG CYS 36 1_555 B ZN 6 K ZN ZN 1_555 B CYS 373 B SG CYS 63 1_555 109.9 B CYS 349 B SG CYS 39 1_555 B ZN 6 K ZN ZN 1_555 B CYS 373 B SG CYS 63 1_555 113.9 B CYS 346 B SG CYS 36 1_555 B ZN 6 K ZN ZN 1_555 B CYS 376 B SG CYS 66 1_555 111.3 B CYS 349 B SG CYS 39 1_555 B ZN 6 K ZN ZN 1_555 B CYS 376 B SG CYS 66 1_555 109.3 B CYS 373 B SG CYS 63 1_555 B ZN 6 K ZN ZN 1_555 B CYS 376 B SG CYS 66 1_555 109.1 C M3L 4 N-TRIMETHYLLYSINE C M3L 4 LYS D M3L 4 N-TRIMETHYLLYSINE D M3L 4 LYS 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 344 A N LEU 34 A O PHE 353 A O PHE 43 B N LEU 344 B N LEU 34 B O PHE 353 B O PHE 43 1 A CG ASN 378 A CG ASN 68 1 Y 1 A OD1 ASN 378 A OD1 ASN 68 1 Y 1 A ND2 ASN 378 A ND2 ASN 68 1 Y 1 D CG GLN 5 D CG GLN 5 1 Y 1 D CD GLN 5 D CD GLN 5 1 Y 1 D OE1 GLN 5 D OE1 GLN 5 1 Y 1 D NE2 GLN 5 D NE2 GLN 5 1 Y 1 A SER 311 A SER 1 1 Y 1 A GLY 312 A GLY 2 1 Y 1 A ALA 380 A ALA 70 1 Y 1 B SER 311 B SER 1 1 Y 1 B GLY 312 B GLY 2 1 Y 1 B ASN 378 B ASN 68 1 Y 1 B ASP 379 B ASP 69 1 Y 1 B ALA 380 B ALA 70 1 Y 1 C ALA 7 C ALA 7 1 Y 1 C ARG 8 C ARG 8 1 Y 1 C LYS 9 C LYS 9 1 Y 1 D ALA 7 D ALA 7 1 Y 1 D ARG 8 D ARG 8 1 Y 1 D LYS 9 D LYS 9 1 Y 1 A ALA 330 -121.45 -155.62 1 A GLU 348 -104.04 -61.38 1 B ALA 330 -116.95 -154.95 71.460 29.5322 15.080 5.7793 0.0000 -0.0000 5.7793 -0.0000 -11.5585 0.2467 0.2030 0.2052 1.9501 19.7780 605 12220 4.9500 92.7900 1.000 1.000 0.8331 0.2200 RANDOM 1 THROUGHOUT 0.090 2 MOLECULAR REPLACEMENT 22.4100 0.9000 1.1100 PDB entry 3SOU CHAIN A ML FLAT BULK SOLVENT MODEL 40.8420 0.3840 1.9501 19.7780 47 1188 8 0 1133 0.008 1157 1.115 1563 0.073 162 0.004 206 19.233 451 0.2927 0.2074 2.1461 137 2517 2654 4 83.0000 0.2298 0.1988 2.4561 163 2759 2922 4 91.0000 0.2527 0.2036 3.0926 151 3030 3181 4 97.0000 0.2382 0.2022 19.7795 154 3309 3463 4 99.0000 1.950 50.000 3SOW 13122 2 0.120 2.338 1 11.200 13.300 98.700 0.781 1.950 1.980 3.23 591 1.173 1 13.700 96.100 0.730 1.980 2.020 638 1.176 1 13.200 95.800 0.603 2.020 2.060 602 1.179 1 13.800 98.000 0.480 2.060 2.100 635 1.364 1 13.800 98.100 0.414 2.100 2.150 650 1.375 1 13.200 98.200 0.355 2.150 2.200 618 1.490 1 14.000 97.600 0.311 2.200 2.250 659 1.548 1 13.200 98.400 0.282 2.250 2.310 616 1.648 1 13.400 99.000 0.231 2.310 2.380 651 1.664 1 13.400 97.900 0.217 2.380 2.460 630 1.744 1 13.300 99.100 0.186 2.460 2.540 663 1.878 1 13.000 99.300 0.163 2.540 2.650 654 2.101 1 13.000 98.600 0.143 2.650 2.770 638 2.240 1 13.300 99.100 0.117 2.770 2.910 661 2.700 1 13.000 99.800 0.105 2.910 3.100 675 3.203 1 12.800 100.000 0.087 3.100 3.330 675 3.457 1 12.800 99.900 0.079 3.330 3.670 671 4.028 1 12.500 99.900 0.065 3.670 4.200 695 4.094 1 12.500 100.000 0.060 4.200 5.290 715 4.064 1 13.200 99.900 0.055 5.290 50.000 785 3.894 1 14.300 98.200 data reduction Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ DENZO program data scaling Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ SCALEPACK package phasing Alexei Vaguine alexei@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/molrep.html MOLREP program refinement Paul D. Adams PDAdams@lbl.gov C++ http://www.phenix-online.org/ PHENIX package 1.5_2 data extraction PDB deposit@deposit.rcsb.org June 10, 2010 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.10 data scaling HKL-2000 Structure of UHRF1 PHD finger in complex with histone H3K4me3 1-9 peptide 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 4 N N 4 N N 4 N N Half of the content in the asymmetric unit that contains protein-peptide complex A ASP 339 A ASP 29 HELX_P A ASP 341 A ASP 31 5 1 3 A TYR 356 A TYR 46 HELX_P A LEU 358 A LEU 48 5 2 3 B ASP 339 B ASP 29 HELX_P B ASP 341 B ASP 31 5 3 3 covale 1.329 both C THR 3 C C THR 3 1_555 C M3L 4 C N M3L 4 1_555 covale 1.329 both C M3L 4 C C M3L 4 1_555 C GLN 5 C N GLN 5 1_555 covale 1.332 both D THR 3 D C THR 3 1_555 D M3L 4 D N M3L 4 1_555 covale 1.326 both D M3L 4 D C M3L 4 1_555 D GLN 5 D N GLN 5 1_555 metalc 2.379 A ZN 1 E ZN ZN 1_555 A CYS 315 A SG CYS 5 1_555 metalc 2.451 A ZN 1 E ZN ZN 1_555 A CYS 318 A SG CYS 8 1_555 metalc 2.305 A ZN 1 E ZN ZN 1_555 A CYS 326 A SG CYS 16 1_555 metalc 2.335 A ZN 1 E ZN ZN 1_555 A CYS 329 A SG CYS 19 1_555 metalc 2.278 A ZN 2 F ZN ZN 1_555 A CYS 331 A SG CYS 21 1_555 metalc 2.435 A ZN 2 F ZN ZN 1_555 A CYS 334 A SG CYS 24 1_555 metalc 2.142 A ZN 2 F ZN ZN 1_555 A HIS 354 A ND1 HIS 44 1_555 metalc 2.333 A ZN 2 F ZN ZN 1_555 A CYS 357 A SG CYS 47 1_555 metalc 2.468 A ZN 3 G ZN ZN 1_555 A CYS 346 A SG CYS 36 1_555 metalc 2.404 A ZN 3 G ZN ZN 1_555 A CYS 349 A SG CYS 39 1_555 metalc 2.389 A ZN 3 G ZN ZN 1_555 A CYS 373 A SG CYS 63 1_555 metalc 2.404 A ZN 3 G ZN ZN 1_555 A CYS 376 A SG CYS 66 1_555 metalc 2.082 A ZN 7 H ZN ZN 1_555 A HIS 332 A NE2 HIS 22 1_555 metalc 2.012 A ZN 7 H ZN ZN 1_555 A GLU 375 A OE2 GLU 65 1_555 metalc 1.933 A ZN 7 H ZN ZN 1_555 B HIS 317 B ND1 HIS 7 1_555 metalc 1.984 A HIS 317 A ND1 HIS 7 1_555 B ZN 8 L ZN ZN 1_555 metalc 2.365 B ZN 4 I ZN ZN 1_555 B CYS 331 B SG CYS 21 1_555 metalc 2.407 B ZN 4 I ZN ZN 1_555 B CYS 334 B SG CYS 24 1_555 metalc 2.112 B ZN 4 I ZN ZN 1_555 B HIS 354 B ND1 HIS 44 1_555 metalc 2.285 B ZN 4 I ZN ZN 1_555 B CYS 357 B SG CYS 47 1_555 metalc 2.429 B ZN 5 J ZN ZN 1_555 B CYS 315 B SG CYS 5 1_555 metalc 2.342 B ZN 5 J ZN ZN 1_555 B CYS 318 B SG CYS 8 1_555 metalc 2.371 B ZN 5 J ZN ZN 1_555 B CYS 326 B SG CYS 16 1_555 metalc 2.347 B ZN 5 J ZN ZN 1_555 B CYS 329 B SG CYS 19 1_555 metalc 2.444 B ZN 6 K ZN ZN 1_555 B CYS 346 B SG CYS 36 1_555 metalc 2.423 B ZN 6 K ZN ZN 1_555 B CYS 349 B SG CYS 39 1_555 metalc 2.271 B ZN 6 K ZN ZN 1_555 B CYS 373 B SG CYS 63 1_555 metalc 2.372 B ZN 6 K ZN ZN 1_555 B CYS 376 B SG CYS 66 1_555 metalc 2.090 B ZN 8 L ZN ZN 1_555 B HIS 332 B NE2 HIS 22 1_555 metalc 2.050 B ZN 8 L ZN ZN 1_555 B GLU 375 B OE2 GLU 65 1_555 LIGASE Zn coordinated PHD finger, Histone binding, Histone H3, ligase A ASP 359 A ASP 49 1 A PRO 360 A PRO 50 0.80 B ASP 359 B ASP 49 1 B PRO 360 B PRO 50 7.09 UHRF1_HUMAN UNP 1 298 Q96T88 SGPSCKHCKDDVNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRNDA 3SOW PDB 2 1 3SOW ARTKQTARK 298 367 3SOW 311 380 Q96T88 A 1 1 70 298 367 3SOW 311 380 Q96T88 B 1 1 70 1 9 3SOW 1 9 3SOW C 2 1 9 1 9 3SOW 1 9 3SOW D 2 1 9 2 2 anti-parallel anti-parallel A GLN 343 A GLN 33 A MET 345 A MET 35 A ALA 352 A ALA 42 A HIS 354 A HIS 44 B GLN 343 B GLN 33 B MET 345 B MET 35 B ALA 352 B ALA 42 B HIS 354 B HIS 44 BINDING SITE FOR RESIDUE ZN A 1 A ZN 1 Software 4 BINDING SITE FOR RESIDUE ZN A 2 A ZN 2 Software 4 BINDING SITE FOR RESIDUE ZN A 3 A ZN 3 Software 4 BINDING SITE FOR RESIDUE ZN A 7 A ZN 7 Software 3 BINDING SITE FOR RESIDUE ZN B 4 B ZN 4 Software 4 BINDING SITE FOR RESIDUE ZN B 5 B ZN 5 Software 4 BINDING SITE FOR RESIDUE ZN B 6 B ZN 6 Software 4 BINDING SITE FOR RESIDUE ZN B 8 B ZN 8 Software 4 A CYS 315 A CYS 5 4 1_555 A CYS 318 A CYS 8 4 1_555 A CYS 326 A CYS 16 4 1_555 A CYS 329 A CYS 19 4 1_555 A CYS 331 A CYS 21 4 1_555 A CYS 334 A CYS 24 4 1_555 A HIS 354 A HIS 44 4 1_555 A CYS 357 A CYS 47 4 1_555 A CYS 346 A CYS 36 4 1_555 A CYS 349 A CYS 39 4 1_555 A CYS 373 A CYS 63 4 1_555 A CYS 376 A CYS 66 4 1_555 A HIS 332 A HIS 22 3 1_555 A GLU 375 A GLU 65 3 1_555 B HIS 317 B HIS 7 3 1_555 B CYS 331 B CYS 21 4 1_555 B CYS 334 B CYS 24 4 1_555 B HIS 354 B HIS 44 4 1_555 B CYS 357 B CYS 47 4 1_555 B CYS 315 B CYS 5 4 1_555 B CYS 318 B CYS 8 4 1_555 B CYS 326 B CYS 16 4 1_555 B CYS 329 B CYS 19 4 1_555 B CYS 346 B CYS 36 4 1_555 B CYS 349 B CYS 39 4 1_555 B CYS 373 B CYS 63 4 1_555 B CYS 376 B CYS 66 4 1_555 A HIS 317 A HIS 7 4 1_555 B HOH 43 N HOH 4 1_555 B HIS 332 B HIS 22 4 1_555 B GLU 375 B GLU 65 4 1_555 96 P 43 21 2