0.023462
0.000000
0.000000
0.000000
0.023462
0.000000
0.000000
0.000000
0.005450
0.000000
0.000000
0.000000
Rajakumara, E.
Patel, D.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.000
90.000
90.000
42.622
42.622
183.489
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H21 N2 O2 1
189.275
n
N-TRIMETHYLLYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
C
N
234
N
C
N
235
N
C
N
236
N
N
N
237
N
C
N
238
N
O
N
239
N
O
N
240
N
C
N
241
N
C
N
242
N
C
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
N
N
265
S
C
N
266
N
C
N
267
N
O
N
268
N
C
N
269
N
C
N
270
N
S
N
271
N
C
N
272
N
O
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
N
N
285
S
C
N
286
N
C
N
287
N
O
N
288
N
C
Y
289
N
C
Y
290
N
C
Y
291
N
C
Y
292
N
C
Y
293
N
C
Y
294
N
C
N
295
N
O
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
N
C
N
312
N
C
N
313
N
C
N
314
N
O
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
N
N
325
S
C
N
326
N
C
N
327
N
O
N
328
N
C
N
329
N
O
N
330
N
O
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
N
N
339
S
C
N
340
N
C
N
341
N
O
N
342
R
C
N
343
N
O
N
344
N
C
N
345
N
O
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
N
N
356
S
C
N
357
N
C
N
358
N
O
N
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
N
Y
364
N
C
Y
365
N
C
Y
366
N
C
Y
367
N
C
Y
368
N
C
N
369
N
O
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
N
N
383
S
C
N
384
N
C
N
385
N
O
N
386
N
C
Y
387
N
C
Y
388
N
C
Y
389
N
C
Y
390
N
C
Y
391
N
C
Y
392
N
C
N
393
N
O
N
394
N
O
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
N
N
407
S
C
N
408
N
C
N
409
N
O
N
410
N
C
N
411
N
C
N
412
N
C
N
413
N
O
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
doub
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
doub
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
Y
281
N
doub
Y
282
N
sing
Y
283
N
sing
N
284
N
sing
Y
285
N
doub
N
286
N
sing
Y
287
N
doub
N
288
N
sing
Y
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
doub
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
doub
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
Y
350
N
doub
Y
351
N
sing
Y
352
N
sing
N
353
N
sing
Y
354
N
doub
Y
355
N
sing
Y
356
N
sing
N
357
N
sing
Y
358
N
sing
Y
359
N
doub
N
360
N
sing
Y
361
N
doub
N
362
N
sing
Y
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
Y
378
N
doub
Y
379
N
sing
Y
380
N
sing
N
381
N
sing
Y
382
N
doub
N
383
N
sing
Y
384
N
doub
N
385
N
sing
Y
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
doub
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
US
Mol.Cell
MOCEFL
2168
1097-2765
43
275
284
10.1016/j.molcel.2011.07.006
21777816
PHD Finger Recognition of Unmodified Histone H3R2 Links UHRF1 to Regulation of Euchromatic Gene Expression.
2011
10.2210/pdb3sow/pdb
pdb_00003sow
100
1
Mirrors
CCD
ADSC QUANTUM 315
Cryo-cooled double Si(111) double crystal
SINGLE WAVELENGTH
M
x-ray
1
0.97918
1.0
24-ID-C
APS
0.97918
SYNCHROTRON
APS BEAMLINE 24-ID-C
7920.976
E3 ubiquitin-protein ligase UHRF1
6.3.2.-
UHRF1 (UNP Residues 298-367)
2
man
polymer
1105.334
Histone H3
2
syn
polymer
65.409
ZINC ION
8
syn
non-polymer
18.015
water
47
nat
water
Inverted CCAAT box-binding protein of 90 kDa, Nuclear protein 95, Nuclear zinc finger protein Np95, HuNp95, RING finger protein 106, Transcription factor ICBP90, Ubiquitin-like PHD and RING finger domain-containing protein 1, Ubiquitin-like-containing PHD and RING finger domains protein 1
no
no
SGPSCKHCKDDVNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRNDA
SGPSCKHCKDDVNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRNDA
A,B
polypeptide(L)
no
yes
ART(M3L)QTARK
ARTKQTARK
C,D
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
PreScission protease cleavable N-terminal GST tag
sample
ICBP90, NP95, RNF106, UHRF1
9606
Homo sapiens
469008
Escherichia coli
Rosetta2 (DE3)
Plasmid
pGEX-6P-1
1
2.31
46.71
VAPOR DIFFUSION, SITTING DROP
6.5
30% w/v polyethylene glycol 8,000, 0.2 M sodium acetate trihydrate, 0.1 M sodium cacodylate trihydrate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K
291
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2011-08-03
1
1
2017-11-08
1
2
2023-09-13
_software.classification
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Structure of UHRF1 protein in complex with histone peptide
Structure of UHRF1 protein in the free form
RCSB
Y
RCSB
2011-06-30
REL
REL
ZN
ZINC ION
HOH
water
Chemically synthesized
9606
Homo sapiens
sample
3SOU
PDB entry 3SOU CHAIN A
PDB
experimental model
ZN
1
3
ZN
ZN
1
A
ZN
2
3
ZN
ZN
2
A
ZN
3
3
ZN
ZN
3
A
ZN
7
3
ZN
ZN
7
A
ZN
4
3
ZN
ZN
4
B
ZN
5
3
ZN
ZN
5
B
ZN
6
3
ZN
ZN
6
B
ZN
8
3
ZN
ZN
8
B
HOH
5
4
HOH
HOH
5
A
HOH
6
4
HOH
HOH
6
A
HOH
8
4
HOH
HOH
8
A
HOH
9
4
HOH
HOH
9
A
HOH
12
4
HOH
HOH
12
A
HOH
13
4
HOH
HOH
13
A
HOH
15
4
HOH
HOH
15
A
HOH
17
4
HOH
HOH
17
A
HOH
19
4
HOH
HOH
19
A
HOH
20
4
HOH
HOH
20
A
HOH
23
4
HOH
HOH
23
A
HOH
24
4
HOH
HOH
24
A
HOH
25
4
HOH
HOH
25
A
HOH
27
4
HOH
HOH
27
A
HOH
29
4
HOH
HOH
29
A
HOH
34
4
HOH
HOH
34
A
HOH
36
4
HOH
HOH
36
A
HOH
39
4
HOH
HOH
39
A
HOH
40
4
HOH
HOH
40
A
HOH
41
4
HOH
HOH
41
A
HOH
44
4
HOH
HOH
44
A
HOH
45
4
HOH
HOH
45
A
HOH
46
4
HOH
HOH
46
A
HOH
1
4
HOH
HOH
381
A
HOH
3
4
HOH
HOH
382
A
HOH
2
4
HOH
HOH
2
B
HOH
7
4
HOH
HOH
7
B
HOH
10
4
HOH
HOH
10
B
HOH
11
4
HOH
HOH
11
B
HOH
14
4
HOH
HOH
14
B
HOH
16
4
HOH
HOH
16
B
HOH
18
4
HOH
HOH
18
B
HOH
21
4
HOH
HOH
21
B
HOH
22
4
HOH
HOH
22
B
HOH
26
4
HOH
HOH
26
B
HOH
28
4
HOH
HOH
28
B
HOH
30
4
HOH
HOH
30
B
HOH
32
4
HOH
HOH
32
B
HOH
33
4
HOH
HOH
33
B
HOH
35
4
HOH
HOH
35
B
HOH
37
4
HOH
HOH
37
B
HOH
38
4
HOH
HOH
38
B
HOH
42
4
HOH
HOH
42
B
HOH
43
4
HOH
HOH
43
B
HOH
47
4
HOH
HOH
47
B
HOH
4
4
HOH
HOH
381
B
HOH
31
4
HOH
HOH
31
C
n
1
311
A
n
2
312
A
PRO
313
n
3
PRO
313
A
SER
314
n
4
SER
314
A
CYS
315
n
5
CYS
315
A
LYS
316
n
6
LYS
316
A
HIS
317
n
7
HIS
317
A
CYS
318
n
8
CYS
318
A
LYS
319
n
9
LYS
319
A
ASP
320
n
10
ASP
320
A
ASP
321
n
11
ASP
321
A
VAL
322
n
12
VAL
322
A
ASN
323
n
13
ASN
323
A
ARG
324
n
14
ARG
324
A
LEU
325
n
15
LEU
325
A
CYS
326
n
16
CYS
326
A
ARG
327
n
17
ARG
327
A
VAL
328
n
18
VAL
328
A
CYS
329
n
19
CYS
329
A
ALA
330
n
20
ALA
330
A
CYS
331
n
21
CYS
331
A
HIS
332
n
22
HIS
332
A
LEU
333
n
23
LEU
333
A
CYS
334
n
24
CYS
334
A
GLY
335
n
25
GLY
335
A
GLY
336
n
26
GLY
336
A
ARG
337
n
27
ARG
337
A
GLN
338
n
28
GLN
338
A
ASP
339
n
29
ASP
339
A
PRO
340
n
30
PRO
340
A
ASP
341
n
31
ASP
341
A
LYS
342
n
32
LYS
342
A
GLN
343
n
33
GLN
343
A
LEU
344
n
34
LEU
344
A
MET
345
n
35
MET
345
A
CYS
346
n
36
CYS
346
A
ASP
347
n
37
ASP
347
A
GLU
348
n
38
GLU
348
A
CYS
349
n
39
CYS
349
A
ASP
350
n
40
ASP
350
A
MET
351
n
41
MET
351
A
ALA
352
n
42
ALA
352
A
PHE
353
n
43
PHE
353
A
HIS
354
n
44
HIS
354
A
ILE
355
n
45
ILE
355
A
TYR
356
n
46
TYR
356
A
CYS
357
n
47
CYS
357
A
LEU
358
n
48
LEU
358
A
ASP
359
n
49
ASP
359
A
PRO
360
n
50
PRO
360
A
PRO
361
n
51
PRO
361
A
LEU
362
n
52
LEU
362
A
SER
363
n
53
SER
363
A
SER
364
n
54
SER
364
A
VAL
365
n
55
VAL
365
A
PRO
366
n
56
PRO
366
A
SER
367
n
57
SER
367
A
GLU
368
n
58
GLU
368
A
ASP
369
n
59
ASP
369
A
GLU
370
n
60
GLU
370
A
TRP
371
n
61
TRP
371
A
TYR
372
n
62
TYR
372
A
CYS
373
n
63
CYS
373
A
PRO
374
n
64
PRO
374
A
GLU
375
n
65
GLU
375
A
CYS
376
n
66
CYS
376
A
ARG
377
n
67
ARG
377
A
ASN
378
n
68
ASN
378
A
ASP
379
n
69
ASP
379
A
n
70
380
A
n
1
311
B
n
2
312
B
PRO
313
n
3
PRO
313
B
SER
314
n
4
SER
314
B
CYS
315
n
5
CYS
315
B
LYS
316
n
6
LYS
316
B
HIS
317
n
7
HIS
317
B
CYS
318
n
8
CYS
318
B
LYS
319
n
9
LYS
319
B
ASP
320
n
10
ASP
320
B
ASP
321
n
11
ASP
321
B
VAL
322
n
12
VAL
322
B
ASN
323
n
13
ASN
323
B
ARG
324
n
14
ARG
324
B
LEU
325
n
15
LEU
325
B
CYS
326
n
16
CYS
326
B
ARG
327
n
17
ARG
327
B
VAL
328
n
18
VAL
328
B
CYS
329
n
19
CYS
329
B
ALA
330
n
20
ALA
330
B
CYS
331
n
21
CYS
331
B
HIS
332
n
22
HIS
332
B
LEU
333
n
23
LEU
333
B
CYS
334
n
24
CYS
334
B
GLY
335
n
25
GLY
335
B
GLY
336
n
26
GLY
336
B
ARG
337
n
27
ARG
337
B
GLN
338
n
28
GLN
338
B
ASP
339
n
29
ASP
339
B
PRO
340
n
30
PRO
340
B
ASP
341
n
31
ASP
341
B
LYS
342
n
32
LYS
342
B
GLN
343
n
33
GLN
343
B
LEU
344
n
34
LEU
344
B
MET
345
n
35
MET
345
B
CYS
346
n
36
CYS
346
B
ASP
347
n
37
ASP
347
B
GLU
348
n
38
GLU
348
B
CYS
349
n
39
CYS
349
B
ASP
350
n
40
ASP
350
B
MET
351
n
41
MET
351
B
ALA
352
n
42
ALA
352
B
PHE
353
n
43
PHE
353
B
HIS
354
n
44
HIS
354
B
ILE
355
n
45
ILE
355
B
TYR
356
n
46
TYR
356
B
CYS
357
n
47
CYS
357
B
LEU
358
n
48
LEU
358
B
ASP
359
n
49
ASP
359
B
PRO
360
n
50
PRO
360
B
PRO
361
n
51
PRO
361
B
LEU
362
n
52
LEU
362
B
SER
363
n
53
SER
363
B
SER
364
n
54
SER
364
B
VAL
365
n
55
VAL
365
B
PRO
366
n
56
PRO
366
B
SER
367
n
57
SER
367
B
GLU
368
n
58
GLU
368
B
ASP
369
n
59
ASP
369
B
GLU
370
n
60
GLU
370
B
TRP
371
n
61
TRP
371
B
TYR
372
n
62
TYR
372
B
CYS
373
n
63
CYS
373
B
PRO
374
n
64
PRO
374
B
GLU
375
n
65
GLU
375
B
CYS
376
n
66
CYS
376
B
ARG
377
n
67
ARG
377
B
n
68
378
B
n
69
379
B
n
70
380
B
ALA
1
n
1
ALA
1
C
ARG
2
n
2
ARG
2
C
THR
3
n
3
THR
3
C
M3L
4
n
4
M3L
4
C
GLN
5
n
5
GLN
5
C
THR
6
n
6
THR
6
C
n
7
7
C
n
8
8
C
n
9
9
C
ALA
1
n
1
ALA
1
D
ARG
2
n
2
ARG
2
D
THR
3
n
3
THR
3
D
M3L
4
n
4
M3L
4
D
GLN
5
n
5
GLN
5
D
THR
6
n
6
THR
6
D
n
7
7
D
n
8
8
D
n
9
9
D
author_and_software_defined_assembly
PISA
2
dimeric
author_and_software_defined_assembly
PISA
2
dimeric
software_defined_assembly
PISA
4
tetrameric
1020
-34
5060
980
-32
4920
2780
-96
9190
A
CYS
315
A
SG
CYS
5
1_555
A
ZN
1
E
ZN
ZN
1_555
A
CYS
318
A
SG
CYS
8
1_555
110.6
A
CYS
315
A
SG
CYS
5
1_555
A
ZN
1
E
ZN
ZN
1_555
A
CYS
326
A
SG
CYS
16
1_555
111.6
A
CYS
318
A
SG
CYS
8
1_555
A
ZN
1
E
ZN
ZN
1_555
A
CYS
326
A
SG
CYS
16
1_555
112.6
A
CYS
315
A
SG
CYS
5
1_555
A
ZN
1
E
ZN
ZN
1_555
A
CYS
329
A
SG
CYS
19
1_555
108.0
A
CYS
318
A
SG
CYS
8
1_555
A
ZN
1
E
ZN
ZN
1_555
A
CYS
329
A
SG
CYS
19
1_555
100.3
A
CYS
326
A
SG
CYS
16
1_555
A
ZN
1
E
ZN
ZN
1_555
A
CYS
329
A
SG
CYS
19
1_555
113.2
A
CYS
331
A
SG
CYS
21
1_555
A
ZN
2
F
ZN
ZN
1_555
A
CYS
334
A
SG
CYS
24
1_555
109.7
A
CYS
331
A
SG
CYS
21
1_555
A
ZN
2
F
ZN
ZN
1_555
A
HIS
354
A
ND1
HIS
44
1_555
100.9
A
CYS
334
A
SG
CYS
24
1_555
A
ZN
2
F
ZN
ZN
1_555
A
HIS
354
A
ND1
HIS
44
1_555
98.1
A
CYS
331
A
SG
CYS
21
1_555
A
ZN
2
F
ZN
ZN
1_555
A
CYS
357
A
SG
CYS
47
1_555
124.3
A
CYS
334
A
SG
CYS
24
1_555
A
ZN
2
F
ZN
ZN
1_555
A
CYS
357
A
SG
CYS
47
1_555
107.5
A
HIS
354
A
ND1
HIS
44
1_555
A
ZN
2
F
ZN
ZN
1_555
A
CYS
357
A
SG
CYS
47
1_555
113.2
A
CYS
346
A
SG
CYS
36
1_555
A
ZN
3
G
ZN
ZN
1_555
A
CYS
349
A
SG
CYS
39
1_555
105.9
A
CYS
346
A
SG
CYS
36
1_555
A
ZN
3
G
ZN
ZN
1_555
A
CYS
373
A
SG
CYS
63
1_555
109.0
A
CYS
349
A
SG
CYS
39
1_555
A
ZN
3
G
ZN
ZN
1_555
A
CYS
373
A
SG
CYS
63
1_555
114.3
A
CYS
346
A
SG
CYS
36
1_555
A
ZN
3
G
ZN
ZN
1_555
A
CYS
376
A
SG
CYS
66
1_555
109.1
A
CYS
349
A
SG
CYS
39
1_555
A
ZN
3
G
ZN
ZN
1_555
A
CYS
376
A
SG
CYS
66
1_555
111.9
A
CYS
373
A
SG
CYS
63
1_555
A
ZN
3
G
ZN
ZN
1_555
A
CYS
376
A
SG
CYS
66
1_555
106.6
A
HIS
332
A
NE2
HIS
22
1_555
A
ZN
7
H
ZN
ZN
1_555
A
GLU
375
A
OE2
GLU
65
1_555
105.9
A
HIS
332
A
NE2
HIS
22
1_555
A
ZN
7
H
ZN
ZN
1_555
B
HIS
317
B
ND1
HIS
7
1_555
109.1
A
GLU
375
A
OE2
GLU
65
1_555
A
ZN
7
H
ZN
ZN
1_555
B
HIS
317
B
ND1
HIS
7
1_555
124.2
A
HIS
317
A
ND1
HIS
7
1_555
B
ZN
8
L
ZN
ZN
1_555
B
HIS
332
B
NE2
HIS
22
1_555
111.4
A
HIS
317
A
ND1
HIS
7
1_555
B
ZN
8
L
ZN
ZN
1_555
B
GLU
375
B
OE2
GLU
65
1_555
117.0
B
HIS
332
B
NE2
HIS
22
1_555
B
ZN
8
L
ZN
ZN
1_555
B
GLU
375
B
OE2
GLU
65
1_555
108.6
B
CYS
331
B
SG
CYS
21
1_555
B
ZN
4
I
ZN
ZN
1_555
B
CYS
334
B
SG
CYS
24
1_555
109.6
B
CYS
331
B
SG
CYS
21
1_555
B
ZN
4
I
ZN
ZN
1_555
B
HIS
354
B
ND1
HIS
44
1_555
100.1
B
CYS
334
B
SG
CYS
24
1_555
B
ZN
4
I
ZN
ZN
1_555
B
HIS
354
B
ND1
HIS
44
1_555
97.1
B
CYS
331
B
SG
CYS
21
1_555
B
ZN
4
I
ZN
ZN
1_555
B
CYS
357
B
SG
CYS
47
1_555
122.7
B
CYS
334
B
SG
CYS
24
1_555
B
ZN
4
I
ZN
ZN
1_555
B
CYS
357
B
SG
CYS
47
1_555
110.1
B
HIS
354
B
ND1
HIS
44
1_555
B
ZN
4
I
ZN
ZN
1_555
B
CYS
357
B
SG
CYS
47
1_555
114.0
B
CYS
315
B
SG
CYS
5
1_555
B
ZN
5
J
ZN
ZN
1_555
B
CYS
318
B
SG
CYS
8
1_555
110.5
B
CYS
315
B
SG
CYS
5
1_555
B
ZN
5
J
ZN
ZN
1_555
B
CYS
326
B
SG
CYS
16
1_555
114.2
B
CYS
318
B
SG
CYS
8
1_555
B
ZN
5
J
ZN
ZN
1_555
B
CYS
326
B
SG
CYS
16
1_555
112.2
B
CYS
315
B
SG
CYS
5
1_555
B
ZN
5
J
ZN
ZN
1_555
B
CYS
329
B
SG
CYS
19
1_555
107.6
B
CYS
318
B
SG
CYS
8
1_555
B
ZN
5
J
ZN
ZN
1_555
B
CYS
329
B
SG
CYS
19
1_555
99.9
B
CYS
326
B
SG
CYS
16
1_555
B
ZN
5
J
ZN
ZN
1_555
B
CYS
329
B
SG
CYS
19
1_555
111.3
B
CYS
346
B
SG
CYS
36
1_555
B
ZN
6
K
ZN
ZN
1_555
B
CYS
349
B
SG
CYS
39
1_555
103.2
B
CYS
346
B
SG
CYS
36
1_555
B
ZN
6
K
ZN
ZN
1_555
B
CYS
373
B
SG
CYS
63
1_555
109.9
B
CYS
349
B
SG
CYS
39
1_555
B
ZN
6
K
ZN
ZN
1_555
B
CYS
373
B
SG
CYS
63
1_555
113.9
B
CYS
346
B
SG
CYS
36
1_555
B
ZN
6
K
ZN
ZN
1_555
B
CYS
376
B
SG
CYS
66
1_555
111.3
B
CYS
349
B
SG
CYS
39
1_555
B
ZN
6
K
ZN
ZN
1_555
B
CYS
376
B
SG
CYS
66
1_555
109.3
B
CYS
373
B
SG
CYS
63
1_555
B
ZN
6
K
ZN
ZN
1_555
B
CYS
376
B
SG
CYS
66
1_555
109.1
C
M3L
4
N-TRIMETHYLLYSINE
C
M3L
4
LYS
D
M3L
4
N-TRIMETHYLLYSINE
D
M3L
4
LYS
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
344
A
N
LEU
34
A
O
PHE
353
A
O
PHE
43
B
N
LEU
344
B
N
LEU
34
B
O
PHE
353
B
O
PHE
43
1
A
CG
ASN
378
A
CG
ASN
68
1
Y
1
A
OD1
ASN
378
A
OD1
ASN
68
1
Y
1
A
ND2
ASN
378
A
ND2
ASN
68
1
Y
1
D
CG
GLN
5
D
CG
GLN
5
1
Y
1
D
CD
GLN
5
D
CD
GLN
5
1
Y
1
D
OE1
GLN
5
D
OE1
GLN
5
1
Y
1
D
NE2
GLN
5
D
NE2
GLN
5
1
Y
1
A
SER
311
A
SER
1
1
Y
1
A
GLY
312
A
GLY
2
1
Y
1
A
ALA
380
A
ALA
70
1
Y
1
B
SER
311
B
SER
1
1
Y
1
B
GLY
312
B
GLY
2
1
Y
1
B
ASN
378
B
ASN
68
1
Y
1
B
ASP
379
B
ASP
69
1
Y
1
B
ALA
380
B
ALA
70
1
Y
1
C
ALA
7
C
ALA
7
1
Y
1
C
ARG
8
C
ARG
8
1
Y
1
C
LYS
9
C
LYS
9
1
Y
1
D
ALA
7
D
ALA
7
1
Y
1
D
ARG
8
D
ARG
8
1
Y
1
D
LYS
9
D
LYS
9
1
Y
1
A
ALA
330
-121.45
-155.62
1
A
GLU
348
-104.04
-61.38
1
B
ALA
330
-116.95
-154.95
71.460
29.5322
15.080
5.7793
0.0000
-0.0000
5.7793
-0.0000
-11.5585
0.2467
0.2030
0.2052
1.9501
19.7780
605
12220
4.9500
92.7900
1.000
1.000
0.8331
0.2200
RANDOM
1
THROUGHOUT
0.090
2
MOLECULAR REPLACEMENT
22.4100
0.9000
1.1100
PDB entry 3SOU CHAIN A
ML
FLAT BULK SOLVENT MODEL
40.8420
0.3840
1.9501
19.7780
47
1188
8
0
1133
0.008
1157
1.115
1563
0.073
162
0.004
206
19.233
451
0.2927
0.2074
2.1461
137
2517
2654
4
83.0000
0.2298
0.1988
2.4561
163
2759
2922
4
91.0000
0.2527
0.2036
3.0926
151
3030
3181
4
97.0000
0.2382
0.2022
19.7795
154
3309
3463
4
99.0000
1.950
50.000
3SOW
13122
2
0.120
2.338
1
11.200
13.300
98.700
0.781
1.950
1.980
3.23
591
1.173
1
13.700
96.100
0.730
1.980
2.020
638
1.176
1
13.200
95.800
0.603
2.020
2.060
602
1.179
1
13.800
98.000
0.480
2.060
2.100
635
1.364
1
13.800
98.100
0.414
2.100
2.150
650
1.375
1
13.200
98.200
0.355
2.150
2.200
618
1.490
1
14.000
97.600
0.311
2.200
2.250
659
1.548
1
13.200
98.400
0.282
2.250
2.310
616
1.648
1
13.400
99.000
0.231
2.310
2.380
651
1.664
1
13.400
97.900
0.217
2.380
2.460
630
1.744
1
13.300
99.100
0.186
2.460
2.540
663
1.878
1
13.000
99.300
0.163
2.540
2.650
654
2.101
1
13.000
98.600
0.143
2.650
2.770
638
2.240
1
13.300
99.100
0.117
2.770
2.910
661
2.700
1
13.000
99.800
0.105
2.910
3.100
675
3.203
1
12.800
100.000
0.087
3.100
3.330
675
3.457
1
12.800
99.900
0.079
3.330
3.670
671
4.028
1
12.500
99.900
0.065
3.670
4.200
695
4.094
1
12.500
100.000
0.060
4.200
5.290
715
4.064
1
13.200
99.900
0.055
5.290
50.000
785
3.894
1
14.300
98.200
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
program
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
phasing
Alexei Vaguine
alexei@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/molrep.html
MOLREP
program
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.5_2
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
data scaling
HKL-2000
Structure of UHRF1 PHD finger in complex with histone H3K4me3 1-9 peptide
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
4
N
N
4
N
N
Half of the content in the asymmetric unit that contains protein-peptide complex
A
ASP
339
A
ASP
29
HELX_P
A
ASP
341
A
ASP
31
5
1
3
A
TYR
356
A
TYR
46
HELX_P
A
LEU
358
A
LEU
48
5
2
3
B
ASP
339
B
ASP
29
HELX_P
B
ASP
341
B
ASP
31
5
3
3
covale
1.329
both
C
THR
3
C
C
THR
3
1_555
C
M3L
4
C
N
M3L
4
1_555
covale
1.329
both
C
M3L
4
C
C
M3L
4
1_555
C
GLN
5
C
N
GLN
5
1_555
covale
1.332
both
D
THR
3
D
C
THR
3
1_555
D
M3L
4
D
N
M3L
4
1_555
covale
1.326
both
D
M3L
4
D
C
M3L
4
1_555
D
GLN
5
D
N
GLN
5
1_555
metalc
2.379
A
ZN
1
E
ZN
ZN
1_555
A
CYS
315
A
SG
CYS
5
1_555
metalc
2.451
A
ZN
1
E
ZN
ZN
1_555
A
CYS
318
A
SG
CYS
8
1_555
metalc
2.305
A
ZN
1
E
ZN
ZN
1_555
A
CYS
326
A
SG
CYS
16
1_555
metalc
2.335
A
ZN
1
E
ZN
ZN
1_555
A
CYS
329
A
SG
CYS
19
1_555
metalc
2.278
A
ZN
2
F
ZN
ZN
1_555
A
CYS
331
A
SG
CYS
21
1_555
metalc
2.435
A
ZN
2
F
ZN
ZN
1_555
A
CYS
334
A
SG
CYS
24
1_555
metalc
2.142
A
ZN
2
F
ZN
ZN
1_555
A
HIS
354
A
ND1
HIS
44
1_555
metalc
2.333
A
ZN
2
F
ZN
ZN
1_555
A
CYS
357
A
SG
CYS
47
1_555
metalc
2.468
A
ZN
3
G
ZN
ZN
1_555
A
CYS
346
A
SG
CYS
36
1_555
metalc
2.404
A
ZN
3
G
ZN
ZN
1_555
A
CYS
349
A
SG
CYS
39
1_555
metalc
2.389
A
ZN
3
G
ZN
ZN
1_555
A
CYS
373
A
SG
CYS
63
1_555
metalc
2.404
A
ZN
3
G
ZN
ZN
1_555
A
CYS
376
A
SG
CYS
66
1_555
metalc
2.082
A
ZN
7
H
ZN
ZN
1_555
A
HIS
332
A
NE2
HIS
22
1_555
metalc
2.012
A
ZN
7
H
ZN
ZN
1_555
A
GLU
375
A
OE2
GLU
65
1_555
metalc
1.933
A
ZN
7
H
ZN
ZN
1_555
B
HIS
317
B
ND1
HIS
7
1_555
metalc
1.984
A
HIS
317
A
ND1
HIS
7
1_555
B
ZN
8
L
ZN
ZN
1_555
metalc
2.365
B
ZN
4
I
ZN
ZN
1_555
B
CYS
331
B
SG
CYS
21
1_555
metalc
2.407
B
ZN
4
I
ZN
ZN
1_555
B
CYS
334
B
SG
CYS
24
1_555
metalc
2.112
B
ZN
4
I
ZN
ZN
1_555
B
HIS
354
B
ND1
HIS
44
1_555
metalc
2.285
B
ZN
4
I
ZN
ZN
1_555
B
CYS
357
B
SG
CYS
47
1_555
metalc
2.429
B
ZN
5
J
ZN
ZN
1_555
B
CYS
315
B
SG
CYS
5
1_555
metalc
2.342
B
ZN
5
J
ZN
ZN
1_555
B
CYS
318
B
SG
CYS
8
1_555
metalc
2.371
B
ZN
5
J
ZN
ZN
1_555
B
CYS
326
B
SG
CYS
16
1_555
metalc
2.347
B
ZN
5
J
ZN
ZN
1_555
B
CYS
329
B
SG
CYS
19
1_555
metalc
2.444
B
ZN
6
K
ZN
ZN
1_555
B
CYS
346
B
SG
CYS
36
1_555
metalc
2.423
B
ZN
6
K
ZN
ZN
1_555
B
CYS
349
B
SG
CYS
39
1_555
metalc
2.271
B
ZN
6
K
ZN
ZN
1_555
B
CYS
373
B
SG
CYS
63
1_555
metalc
2.372
B
ZN
6
K
ZN
ZN
1_555
B
CYS
376
B
SG
CYS
66
1_555
metalc
2.090
B
ZN
8
L
ZN
ZN
1_555
B
HIS
332
B
NE2
HIS
22
1_555
metalc
2.050
B
ZN
8
L
ZN
ZN
1_555
B
GLU
375
B
OE2
GLU
65
1_555
LIGASE
Zn coordinated PHD finger, Histone binding, Histone H3, ligase
A
ASP
359
A
ASP
49
1
A
PRO
360
A
PRO
50
0.80
B
ASP
359
B
ASP
49
1
B
PRO
360
B
PRO
50
7.09
UHRF1_HUMAN
UNP
1
298
Q96T88
SGPSCKHCKDDVNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRNDA
3SOW
PDB
2
1
3SOW
ARTKQTARK
298
367
3SOW
311
380
Q96T88
A
1
1
70
298
367
3SOW
311
380
Q96T88
B
1
1
70
1
9
3SOW
1
9
3SOW
C
2
1
9
1
9
3SOW
1
9
3SOW
D
2
1
9
2
2
anti-parallel
anti-parallel
A
GLN
343
A
GLN
33
A
MET
345
A
MET
35
A
ALA
352
A
ALA
42
A
HIS
354
A
HIS
44
B
GLN
343
B
GLN
33
B
MET
345
B
MET
35
B
ALA
352
B
ALA
42
B
HIS
354
B
HIS
44
BINDING SITE FOR RESIDUE ZN A 1
A
ZN
1
Software
4
BINDING SITE FOR RESIDUE ZN A 2
A
ZN
2
Software
4
BINDING SITE FOR RESIDUE ZN A 3
A
ZN
3
Software
4
BINDING SITE FOR RESIDUE ZN A 7
A
ZN
7
Software
3
BINDING SITE FOR RESIDUE ZN B 4
B
ZN
4
Software
4
BINDING SITE FOR RESIDUE ZN B 5
B
ZN
5
Software
4
BINDING SITE FOR RESIDUE ZN B 6
B
ZN
6
Software
4
BINDING SITE FOR RESIDUE ZN B 8
B
ZN
8
Software
4
A
CYS
315
A
CYS
5
4
1_555
A
CYS
318
A
CYS
8
4
1_555
A
CYS
326
A
CYS
16
4
1_555
A
CYS
329
A
CYS
19
4
1_555
A
CYS
331
A
CYS
21
4
1_555
A
CYS
334
A
CYS
24
4
1_555
A
HIS
354
A
HIS
44
4
1_555
A
CYS
357
A
CYS
47
4
1_555
A
CYS
346
A
CYS
36
4
1_555
A
CYS
349
A
CYS
39
4
1_555
A
CYS
373
A
CYS
63
4
1_555
A
CYS
376
A
CYS
66
4
1_555
A
HIS
332
A
HIS
22
3
1_555
A
GLU
375
A
GLU
65
3
1_555
B
HIS
317
B
HIS
7
3
1_555
B
CYS
331
B
CYS
21
4
1_555
B
CYS
334
B
CYS
24
4
1_555
B
HIS
354
B
HIS
44
4
1_555
B
CYS
357
B
CYS
47
4
1_555
B
CYS
315
B
CYS
5
4
1_555
B
CYS
318
B
CYS
8
4
1_555
B
CYS
326
B
CYS
16
4
1_555
B
CYS
329
B
CYS
19
4
1_555
B
CYS
346
B
CYS
36
4
1_555
B
CYS
349
B
CYS
39
4
1_555
B
CYS
373
B
CYS
63
4
1_555
B
CYS
376
B
CYS
66
4
1_555
A
HIS
317
A
HIS
7
4
1_555
B
HOH
43
N
HOH
4
1_555
B
HIS
332
B
HIS
22
4
1_555
B
GLU
375
B
GLU
65
4
1_555
96
P 43 21 2