0.008053 0.004650 0.000000 0.000000 0.009299 0.000000 0.000000 0.000000 0.006648 0.00000 0.00000 0.00000 Huang, L. Serganov, A. Patel, D.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 18 90.00 90.00 120.00 124.172 124.172 150.428 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C9 H13 N3 O10 P2 385.161 n CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N O N 39 N P N 40 N O N 41 N O N 42 N O N 43 N C N 44 R C N 45 N O N 46 S C N 47 N O N 48 R C N 49 N O N 50 R C N 51 N N N 52 N C N 53 N O N 54 N N N 55 N C N 56 N N N 57 N C N 58 N C N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 S P N 74 N O N 75 N O N 76 N P N 77 N O N 78 N O N 79 N O N 80 N O N 81 N C N 82 R C N 83 N O N 84 R C N 85 N O N 86 R C N 87 N O N 88 R C N 89 N N N 90 N C N 91 N O N 92 N N N 93 N C N 94 N N N 95 N C N 96 N C N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N O N 111 N P N 112 N O N 113 N O N 114 N O N 115 N C N 116 R C N 117 N O N 118 S C N 119 N O N 120 R C N 121 N O N 122 R C Y 123 N N Y 124 N C Y 125 N N Y 126 N C N 127 N C N 128 N O N 129 N N N 130 N C N 131 N N N 132 N N Y 133 N C N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N O N 149 N P N 150 N O N 151 N O N 152 N O N 153 N C N 154 R C N 155 N O N 156 S C N 157 N O N 158 R C N 159 N O N 160 R C N 161 N N N 162 N C N 163 N O N 164 N N N 165 N C N 166 N O N 167 N C N 168 N C N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing N 41 N sing N 42 N doub N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N doub N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N doub N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N doub N 106 N sing N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N doub N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing Y 139 N sing Y 140 N sing Y 141 N doub N 142 N sing Y 143 N sing N 144 N sing Y 145 N doub N 146 N doub N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N doub N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N doub N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N doub N 182 N sing N 183 N sing N 184 N sing N 185 N doub N 186 N sing N 187 N doub N 188 N sing N 189 N sing US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 108 14801 14806 10.1073/pnas.1111701108 21873197 Long-range pseudoknot interactions dictate the regulatory response in the tetrahydrofolate riboswitch. 2011 10.2210/pdb3suy/pdb pdb_00003suy 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2011-04-20 ADSC QUANTUM 315 SINGLE WAVELENGTH M x-ray 1 1.0 24-ID-C APS SYNCHROTRON APS BEAMLINE 24-ID-C RNA (101-MER) 32837.461 riboswitch 1 syn polymer no yes GGACAGAGUAGGUAAACGUGCGUAAAGUGCCUGAGGGACGGGGAGUUGUCCUCAGGACGAACACCGAAAGGUGGCGGUAC GUUUACCGCAUCUCGCUGUU(CCC) GGACAGAGUAGGUAAACGUGCGUAAAGUGCCUGAGGGACGGGGAGUUGUCCUCAGGACGAACACCGAAAGGUGGCGGUAC GUUUACCGCAUCUCGCUGUUC X polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n 1 3.40 63.81 VAPOR DIFFUSION, HANGING DROP 7.0 0.1 M Tris-HCl, pH 7.0 4.2 M Na-formate, VAPOR DIFFUSION, HANGING DROP, temperature 293.15K 293.15 12.929 1 8 X 10 X 88 -21.828 X_A10:G88_X 1 0.615 -0.483 -0.068 1.540 4.893 1 19 X 11 X 87 1.742 X_G11:C87_X 2 -10.663 -0.279 0.212 0.186 -8.553 1 19 X 12 X 86 0.674 X_G12:C86_X 3 -9.788 -0.319 -0.207 -0.193 -3.001 1 20 X 13 X 85 -1.769 X_U13:A85_X 4 -14.449 -0.199 0.092 -0.172 -3.845 1 20 X 14 X 84 -0.478 X_A14:U84_X 5 -14.346 0.693 0.177 -0.190 6.158 1 20 X 15 X 83 -2.499 X_A15:U83_X 6 -9.056 -0.165 0.554 -0.448 -2.089 1 20 X 16 X 82 -1.010 X_A16:U82_X 7 -27.630 0.345 -0.170 -0.060 -3.791 1 19 X 17 X 81 1.168 X_C17:G81_X 8 -16.911 0.669 0.381 -0.267 -2.804 1 19 X 18 X 80 1.773 X_G18:C80_X 9 -6.297 -0.098 0.234 0.091 3.521 1 20 X 19 X 79 4.458 X_U19:A79_X 10 3.730 -0.287 0.297 -0.150 -3.096 1 28 X 20 X 78 2.524 X_G20:U78_X 11 -6.943 -2.223 -0.317 -0.637 0.731 1 19 X 21 X 76 1.665 X_C21:G76_X 12 -9.785 -0.245 -0.151 -0.007 -7.801 1 19 X 22 X 75 -2.989 X_G22:C75_X 13 -23.490 0.470 0.137 -0.287 -5.400 1 28 X 23 X 74 -17.146 X_U23:G74_X 14 -5.984 2.509 0.142 -0.765 0.203 1 19 X 62 X 73 6.620 X_C62:G73_X 15 3.448 0.406 0.155 -0.168 8.591 1 20 X 63 X 72 -10.709 X_A63:U72_X 16 -4.605 0.430 -0.084 -0.272 11.800 1 19 X 64 X 71 1.466 X_C64:G71_X 17 -11.452 -0.131 -0.562 -0.168 14.559 1 19 X 65 X 70 -3.244 X_C65:G70_X 18 -3.403 -0.243 -0.479 -0.190 19.881 X 66 X 69 -42.273 X_G66:A69_X 19 -6.867 7.338 1.107 -5.437 -15.649 4 5 X 26 X 60 -114.281 X_A26:A60_X 20 -11.309 -3.600 -0.695 1.947 12.237 1 X 27 X 59 -62.563 X_G27:G59_X 21 -7.411 -3.598 0.217 1.015 11.090 X 28 X 58 -52.659 X_U28:C58_X 22 -10.871 -1.007 -0.792 1.312 15.798 1 8 X 29 X 57 -4.578 X_G29:A57_X 23 -16.227 -0.389 -0.489 1.379 29.759 1 19 X 30 X 56 -5.428 X_C30:G56_X 24 -25.668 -0.783 -0.863 0.069 11.868 1 19 X 31 X 55 1.589 X_C31:G55_X 25 -9.301 0.712 -0.268 -0.480 3.306 1 20 X 32 X 54 3.786 X_U32:A54_X 26 -4.836 0.204 -0.468 -0.252 -2.558 1 19 X 33 X 53 3.251 X_G33:C53_X 27 -7.359 -1.024 -0.100 -0.227 -3.983 1 20 X 34 X 52 5.315 X_A34:U52_X 28 -9.683 -0.330 0.133 -0.010 -5.288 1 19 X 35 X 51 -2.568 X_G35:C51_X 29 -7.660 -0.410 0.118 -0.446 -7.522 1 19 X 36 X 50 -4.990 X_G36:C50_X 30 -10.014 -0.081 -0.203 -0.416 -27.150 1 28 X 37 X 49 -8.067 X_G37:U49_X 31 -22.851 -2.122 -1.009 -0.531 30.172 1 X 38 X 47 14.322 X_A38:U47_X 32 7.181 -0.560 0.552 0.432 -8.151 1 X 39 X 46 24.495 X_C39:U46_X 33 -1.122 0.798 0.129 -1.362 3.102 1 19 X 41 X 94 -0.064 X_G41:C94_X 34 -6.872 -0.610 -0.161 -0.334 -4.142 1 X 42 X 93 12.254 X_G42:U93_X 35 -12.220 -1.585 0.425 0.001 -8.702 1 19 X 43 X 92 -4.875 X_G43:C92_X 36 -7.790 -0.674 -0.394 -0.510 -27.731 1 20 X 44 X 91 -19.531 X_A44:U91_X 37 -8.625 1.248 -1.134 0.308 2.493 33.660 X X 10 11 9.660 X X 88 87 3.358 5.503 0.900 -2.912 XX_A10G11:C87G88_XX 1 -9.136 16.037 31.972 -5.853 -2.924 3.229 35.496 X X 11 12 9.799 X X 87 86 3.564 5.947 -0.042 -1.776 XX_G11G12:C86C87_XX 2 -0.226 0.373 35.009 -3.823 0.035 3.266 31.517 X X 12 13 -3.613 X X 86 85 3.162 -1.961 -0.060 -1.809 XX_G12U13:A85C86_XX 3 0.158 -0.291 31.457 -2.971 0.140 2.586 36.953 X X 13 14 19.743 X X 85 84 3.169 12.291 -0.179 -1.287 XX_U13A14:U84A85_XX 4 -0.226 0.363 34.916 -3.533 0.254 2.736 27.009 X X 14 15 4.122 X X 84 83 2.837 1.921 -0.185 -1.420 XX_A14A15:U83U84_XX 5 -2.400 5.149 26.837 -3.458 -0.126 3.271 35.747 X X 15 16 7.900 X X 83 82 3.554 4.819 -0.158 -1.486 XX_A15A16:U82U83_XX 6 5.225 -8.565 35.056 -3.153 1.052 2.751 35.929 X X 16 17 15.659 X X 82 81 3.190 9.542 0.487 -1.115 XX_A16C17:G81U82_XX 7 -2.682 4.401 34.578 -3.070 -1.145 2.469 29.089 X X 17 18 15.466 X X 81 80 3.003 7.673 0.470 -1.770 XX_C17G18:C80G81_XX 8 2.062 -4.157 28.005 -4.959 -0.551 2.842 27.867 X X 18 19 10.168 X X 80 79 3.201 4.870 0.338 -1.693 XX_G18U19:A79C80_XX 9 -1.446 3.018 27.409 -4.601 -1.024 2.710 24.725 X X 19 20 16.225 X X 79 78 3.389 6.839 1.383 -2.571 XX_U19G20:U78A79_XX 10 3.284 -7.791 23.550 -7.993 -2.274 3.319 41.077 X X 20 21 -2.807 X X 78 76 3.228 -1.967 -0.501 -1.505 XX_G20C21:G76U78_XX 11 -2.672 3.812 40.949 -1.931 0.423 2.517 42.462 X X 21 22 24.087 X X 76 75 3.401 16.990 -0.350 -1.653 XX_C21G22:C75G76_XX 12 -2.250 3.191 38.996 -3.918 0.266 2.933 45.029 X X 22 23 5.501 X X 75 74 3.053 4.207 -0.543 -1.072 XX_G22U23:G74C75_XX 13 1.025 -1.340 44.831 -1.746 0.794 2.932 33.507 X X 23 62 2.226 X X 74 73 3.034 1.283 -1.490 -2.060 XX_U23C62:G73G74_XX 14 0.536 -0.929 33.479 -3.765 2.664 2.350 29.618 X X 62 63 17.756 X X 73 72 2.994 8.934 -1.166 -1.429 XX_C62A63:U72G73_XX 15 2.098 -4.170 28.191 -4.378 2.652 2.576 34.158 X X 63 64 23.308 X X 72 71 3.166 13.319 1.034 -1.164 XX_A63C64:G71U72_XX 16 3.726 -6.520 31.310 -3.919 -1.218 2.283 35.281 X X 64 65 27.428 X X 71 70 3.356 16.023 -0.172 -1.565 XX_C64C65:G70G71_XX 17 3.400 -5.821 31.356 -4.760 0.745 2.631 63.986 X X 65 66 23.266 X X 70 69 3.540 24.158 -2.983 -1.846 XX_C65G66:A69G70_XX 18 1.443 -1.390 59.688 -2.771 2.877 2.330 35.127 X X 26 27 -1.467 X X 60 59 2.878 -0.878 2.339 -1.958 XX_A26G27:G59A60_XX 19 -8.076 13.495 34.204 -3.138 -4.850 2.999 41.967 X X 27 28 14.885 X X 59 58 3.665 10.555 -0.022 -2.317 XX_G27U28:C58G59_XX 20 -0.924 1.303 40.666 -4.373 -0.069 2.347 30.601 X X 28 29 12.698 X X 58 57 3.173 6.625 1.937 -2.024 XX_U28G29:A57C58_XX 21 -4.665 8.940 29.533 -4.962 -4.464 2.601 32.200 X X 29 30 8.265 X X 57 56 2.735 4.567 0.582 -0.974 XX_G29C30:G56A57_XX 22 1.734 -3.138 31.837 -2.424 -0.796 3.032 45.831 X X 30 31 20.523 X X 56 55 3.830 15.673 0.267 -1.702 XX_C30C31:G55G56_XX 23 -3.936 5.154 43.032 -3.663 -0.714 2.139 33.954 X X 31 32 27.727 X X 55 54 3.313 15.607 -0.050 -1.811 XX_C31U32:A54G55_XX 24 1.896 -3.368 30.190 -5.317 0.355 2.317 24.234 X X 32 33 24.840 X X 54 53 3.346 10.099 -0.263 -1.798 XX_U32G33:C53A54_XX 25 -2.468 6.069 21.921 -7.197 -0.085 3.008 34.868 X X 33 34 9.680 X X 53 52 3.313 5.775 0.645 -1.513 XX_G33A34:U52C53_XX 26 -0.986 1.652 34.388 -3.377 -1.223 2.897 31.475 X X 34 35 9.084 X X 52 51 3.220 4.907 -0.092 -1.838 XX_A34G35:C51U52_XX 27 1.152 -2.132 31.079 -4.252 0.372 3.241 30.244 X X 35 36 5.117 X X 51 50 3.385 2.654 0.603 -2.147 XX_G35G36:C50C51_XX 28 5.128 -9.886 29.700 -4.665 -0.094 2.402 31.023 X X 36 37 28.972 X X 50 49 3.849 14.839 0.291 -2.124 XX_G36G37:U49C50_XX 29 4.113 -8.031 27.013 -6.901 0.268 1.550 50.336 X X 37 38 -10.641 X X 49 47 2.746 -8.411 1.397 -1.390 XX_G37A38:U47U49_XX 30 -31.263 39.553 39.074 -1.181 -3.329 3.531 39.033 X X 38 39 21.800 X X 47 46 4.540 14.250 0.246 -1.993 XX_A38C39:U46U47_XX 31 -1.601 2.449 36.400 -5.185 -0.616 2.347 39.640 X X 41 42 15.375 X X 94 93 3.024 10.261 0.344 -1.899 XX_G41G42:U93C94_XX 32 -7.173 10.748 37.687 -3.813 -1.215 2.678 36.415 X X 42 43 12.924 X X 93 92 3.261 7.994 -0.686 -1.874 XX_G42G43:C92U93_XX 33 4.639 -7.499 35.262 -4.024 1.693 3.009 42.083 X X 43 44 19.734 X X 92 91 3.991 13.892 -0.427 -2.192 XX_G43A44:U91C92_XX 34 5.228 -7.426 39.490 -4.645 1.194 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn repository Initial release Database references Data collection Database references Derived calculations Refinement description 1 0 2011-09-14 1 1 2012-03-14 1 2 2023-09-13 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag same RNA same RNA RCSB Y RCSB 2011-07-11 REL REL 717961 Eubacterium siraeum V10Sc8a sample THE DATABASE REFERENCE CLOSEST TO THE CRYSTALLIZED SEQUENCE IS GB 291556121 (NUCLEOTIDES RANGE: 95183-95281). TO FACILITATE CRYSTALLIZATION, NONCANONICAL BASE PAIRS WERE CONVERTED TO THEIR WATSON CRICK COUNTERPARTS BY U14A, U65C, AND U85A MUTATIONS. 3SUX pdb entry 3SUX PDB experimental model G 1 n 1 G 1 X G 2 n 2 G 2 X A 3 n 3 A 3 X C 4 n 4 C 4 X A 5 n 5 A 5 X G 6 n 6 G 6 X A 7 n 7 A 7 X G 8 n 8 G 8 X U 9 n 9 U 9 X A 10 n 10 A 10 X G 11 n 11 G 11 X G 12 n 12 G 12 X U 13 n 13 U 13 X A 14 n 14 A 14 X A 15 n 15 A 15 X A 16 n 16 A 16 X C 17 n 17 C 17 X G 18 n 18 G 18 X U 19 n 19 U 19 X G 20 n 20 G 20 X C 21 n 21 C 21 X G 22 n 22 G 22 X U 23 n 23 U 23 X A 24 n 24 A 24 X A 25 n 25 A 25 X A 26 n 26 A 26 X G 27 n 27 G 27 X U 28 n 28 U 28 X G 29 n 29 G 29 X C 30 n 30 C 30 X C 31 n 31 C 31 X U 32 n 32 U 32 X G 33 n 33 G 33 X A 34 n 34 A 34 X G 35 n 35 G 35 X G 36 n 36 G 36 X G 37 n 37 G 37 X A 38 n 38 A 38 X C 39 n 39 C 39 X G 40 n 40 G 40 X G 41 n 41 G 41 X G 42 n 42 G 42 X G 43 n 43 G 43 X A 44 n 44 A 44 X G 45 n 45 G 45 X U 46 n 46 U 46 X U 47 n 47 U 47 X G 48 n 48 G 48 X U 49 n 49 U 49 X C 50 n 50 C 50 X C 51 n 51 C 51 X U 52 n 52 U 52 X C 53 n 53 C 53 X A 54 n 54 A 54 X G 55 n 55 G 55 X G 56 n 56 G 56 X A 57 n 57 A 57 X C 58 n 58 C 58 X G 59 n 59 G 59 X A 60 n 60 A 60 X A 61 n 61 A 61 X C 62 n 62 C 62 X A 63 n 63 A 63 X C 64 n 64 C 64 X C 65 n 65 C 65 X G 66 n 66 G 66 X A 67 n 67 A 67 X A 68 n 68 A 68 X A 69 n 69 A 69 X G 70 n 70 G 70 X G 71 n 71 G 71 X U 72 n 72 U 72 X G 73 n 73 G 73 X G 74 n 74 G 74 X C 75 n 75 C 75 X G 76 n 76 G 76 X G 77 n 77 G 77 X U 78 n 78 U 78 X A 79 n 79 A 79 X C 80 n 80 C 80 X G 81 n 81 G 81 X U 82 n 82 U 82 X U 83 n 83 U 83 X U 84 n 84 U 84 X A 85 n 85 A 85 X C 86 n 86 C 86 X C 87 n 87 C 87 X G 88 n 88 G 88 X C 89 n 89 C 89 X A 90 n 90 A 90 X U 91 n 91 U 91 X C 92 n 92 C 92 X U 93 n 93 U 93 X C 94 n 94 C 94 X G 95 n 95 G 95 X C 96 n 96 C 96 X U 97 n 97 U 97 X G 98 n 98 G 98 X U 99 n 99 U 99 X U 100 n 100 U 100 X CCC 101 n 101 CCC 101 X author_defined_assembly 1 monomeric software_defined_assembly PISA 2 dimeric 3820 -27.4 31840 X CCC 101 A CCC 101 C 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 17_555 x-y+1/3,-y+2/3,-z+2/3 crystal symmetry operation 0.0000000000 71.6907376258 100.2853333333 1 4.30 0.70 108.50 112.80 X X X O4' C1' N9 A A A 7 7 7 N 1 -5.83 0.70 109.70 103.87 X X X C1' O4' C4' A A A 25 25 25 N 1 4.90 0.70 108.50 113.40 X X X O4' C1' N1 C C C 58 58 58 N 1 -7.91 1.00 102.60 94.69 X X X C4' C3' C2' G G G 59 59 59 N 1 4.23 0.70 108.50 112.73 X X X O4' C1' N9 G G G 59 59 59 N 1 4.67 0.70 108.50 113.17 X X X O4' C1' N9 A A A 60 60 60 N 1 9.29 1.20 119.70 128.99 X X X C3' O3' P A A U 90 90 91 Y 1 4.49 0.70 108.50 112.99 X X X O4' C1' N1 U U U 93 93 93 N 103.080 1.00 0.50 0.00 1.00 0.00 -1.50 0.930 0.908 0.26906 0.22281 0.22499 0.22499 3.21 20.00 341 7105 7084 4.6 99.70 21.152 0.373 RANDOM 1 THROUGHOUT 0 MOLECULAR REPLACEMENT 0.487 0.80 0.80 1.20 pdb entry 3SUX MAXIMUM LIKELIHOOD MASK 3.21 20.00 0 2176 0 2176 0 0.007 0.021 2437 1.361 3.000 3803 0.057 0.200 504 0.003 0.020 1066 0.162 0.200 828 0.276 0.200 1488 0.184 0.200 65 0.146 0.200 54 0.148 0.200 20 0.795 3.000 3504 1.525 4.500 3803 0.362 0.298 3.292 495 20 98.29 3.20 30.0 3SUY 7473 7451 3.0 0.103 1 26.1 6.7 99.7 0.74 3.20 3.31 2.1 738 1 6.9 99.6 data collection CBASS refinement REFMAC data reduction HKL-2000 data scaling HKL-2000 phasing REFMAC Crystal structure of THF riboswitch, unbound status 1 N N covale 1.604 both X U 100 A O3' U 100 1_555 X CCC 101 A P CCC 101 1_555 hydrog TYPE_8_PAIR X A 10 A N1 A 10 1_555 X G 88 A N1 G 88 1_555 hydrog TYPE_8_PAIR X A 10 A N6 A 10 1_555 X G 88 A O6 G 88 1_555 hydrog WATSON-CRICK X G 11 A N1 G 11 1_555 X C 87 A N3 C 87 1_555 hydrog WATSON-CRICK X G 11 A N2 G 11 1_555 X C 87 A O2 C 87 1_555 hydrog WATSON-CRICK X G 11 A O6 G 11 1_555 X C 87 A N4 C 87 1_555 hydrog WATSON-CRICK X G 12 A N1 G 12 1_555 X C 86 A N3 C 86 1_555 hydrog WATSON-CRICK X G 12 A N2 G 12 1_555 X C 86 A O2 C 86 1_555 hydrog WATSON-CRICK X G 12 A O6 G 12 1_555 X C 86 A N4 C 86 1_555 hydrog WATSON-CRICK X U 13 A N3 U 13 1_555 X A 85 A N1 A 85 1_555 hydrog WATSON-CRICK X U 13 A O4 U 13 1_555 X A 85 A N6 A 85 1_555 hydrog WATSON-CRICK X A 14 A N1 A 14 1_555 X U 84 A N3 U 84 1_555 hydrog WATSON-CRICK X A 14 A N6 A 14 1_555 X U 84 A O4 U 84 1_555 hydrog WATSON-CRICK X A 15 A N1 A 15 1_555 X U 83 A N3 U 83 1_555 hydrog WATSON-CRICK X A 15 A N6 A 15 1_555 X U 83 A O4 U 83 1_555 hydrog WATSON-CRICK X A 16 A N1 A 16 1_555 X U 82 A N3 U 82 1_555 hydrog WATSON-CRICK X A 16 A N6 A 16 1_555 X U 82 A O4 U 82 1_555 hydrog WATSON-CRICK X C 17 A N3 C 17 1_555 X G 81 A N1 G 81 1_555 hydrog WATSON-CRICK X C 17 A N4 C 17 1_555 X G 81 A O6 G 81 1_555 hydrog WATSON-CRICK X C 17 A O2 C 17 1_555 X G 81 A N2 G 81 1_555 hydrog WATSON-CRICK X G 18 A N1 G 18 1_555 X C 80 A N3 C 80 1_555 hydrog WATSON-CRICK X G 18 A N2 G 18 1_555 X C 80 A O2 C 80 1_555 hydrog WATSON-CRICK X G 18 A O6 G 18 1_555 X C 80 A N4 C 80 1_555 hydrog WATSON-CRICK X U 19 A N3 U 19 1_555 X A 79 A N1 A 79 1_555 hydrog WATSON-CRICK X U 19 A O4 U 19 1_555 X A 79 A N6 A 79 1_555 hydrog TYPE_28_PAIR X G 20 A N1 G 20 1_555 X U 78 A O2 U 78 1_555 hydrog TYPE_28_PAIR X G 20 A O6 G 20 1_555 X U 78 A N3 U 78 1_555 hydrog WATSON-CRICK X C 21 A N3 C 21 1_555 X G 76 A N1 G 76 1_555 hydrog WATSON-CRICK X C 21 A N4 C 21 1_555 X G 76 A O6 G 76 1_555 hydrog WATSON-CRICK X C 21 A O2 C 21 1_555 X G 76 A N2 G 76 1_555 hydrog G-A MISPAIR X G 22 A N2 G 22 1_555 X A 25 A N1 A 25 1_555 hydrog WATSON-CRICK X G 22 A N1 G 22 1_555 X C 75 A N3 C 75 1_555 hydrog WATSON-CRICK X G 22 A N2 G 22 1_555 X C 75 A O2 C 75 1_555 hydrog WATSON-CRICK X G 22 A O6 G 22 1_555 X C 75 A N4 C 75 1_555 hydrog TYPE_28_PAIR X U 23 A N3 U 23 1_555 X G 74 A O6 G 74 1_555 hydrog TYPE_28_PAIR X U 23 A O2 U 23 1_555 X G 74 A N1 G 74 1_555 hydrog TYPE_5_PAIR X A 26 A N6 A 26 1_555 X A 60 A N1 A 60 1_555 hydrog TYPE_5_PAIR X A 26 A N7 A 26 1_555 X A 60 A N6 A 60 1_555 hydrog A-G MISPAIR X A 26 A N1 A 26 1_555 X G 76 A N2 G 76 1_555 hydrog G-G MISPAIR X G 27 A O6 G 27 1_555 X G 59 A N1 G 59 1_555 hydrog U-C MISPAIR X U 28 A O4 U 28 1_555 X C 58 A N4 C 58 1_555 hydrog TYPE_8_PAIR X G 29 A N1 G 29 1_555 X A 57 A N1 A 57 1_555 hydrog TYPE_8_PAIR X G 29 A O6 G 29 1_555 X A 57 A N6 A 57 1_555 hydrog WATSON-CRICK X C 30 A N3 C 30 1_555 X G 56 A N1 G 56 1_555 hydrog WATSON-CRICK X C 30 A N4 C 30 1_555 X G 56 A O6 G 56 1_555 hydrog WATSON-CRICK X C 30 A O2 C 30 1_555 X G 56 A N2 G 56 1_555 hydrog WATSON-CRICK X C 31 A N3 C 31 1_555 X G 55 A N1 G 55 1_555 hydrog WATSON-CRICK X C 31 A N4 C 31 1_555 X G 55 A O6 G 55 1_555 hydrog WATSON-CRICK X C 31 A O2 C 31 1_555 X G 55 A N2 G 55 1_555 hydrog WATSON-CRICK X U 32 A N3 U 32 1_555 X A 54 A N1 A 54 1_555 hydrog WATSON-CRICK X U 32 A O4 U 32 1_555 X A 54 A N6 A 54 1_555 hydrog WATSON-CRICK X G 33 A N1 G 33 1_555 X C 53 A N3 C 53 1_555 hydrog WATSON-CRICK X G 33 A N2 G 33 1_555 X C 53 A O2 C 53 1_555 hydrog WATSON-CRICK X G 33 A O6 G 33 1_555 X C 53 A N4 C 53 1_555 hydrog WATSON-CRICK X A 34 A N1 A 34 1_555 X U 52 A N3 U 52 1_555 hydrog WATSON-CRICK X A 34 A N6 A 34 1_555 X U 52 A O4 U 52 1_555 hydrog WATSON-CRICK X G 35 A N1 G 35 1_555 X C 51 A N3 C 51 1_555 hydrog WATSON-CRICK X G 35 A N2 G 35 1_555 X C 51 A O2 C 51 1_555 hydrog WATSON-CRICK X G 35 A O6 G 35 1_555 X C 51 A N4 C 51 1_555 hydrog WATSON-CRICK X G 36 A N1 G 36 1_555 X C 50 A N3 C 50 1_555 hydrog WATSON-CRICK X G 36 A N2 G 36 1_555 X C 50 A O2 C 50 1_555 hydrog WATSON-CRICK X G 36 A O6 G 36 1_555 X C 50 A N4 C 50 1_555 hydrog TYPE_28_PAIR X G 37 A N1 G 37 1_555 X U 49 A O2 U 49 1_555 hydrog TYPE_28_PAIR X G 37 A O6 G 37 1_555 X U 49 A N3 U 49 1_555 hydrog A-U PAIR X A 38 A N1 A 38 1_555 X U 47 A N3 U 47 1_555 hydrog C-U MISPAIR X C 39 A O2 C 39 1_555 X U 46 A N3 U 46 1_555 hydrog WATSON-CRICK X G 41 A N1 G 41 1_555 X C 94 A N3 C 94 1_555 hydrog WATSON-CRICK X G 41 A N2 G 41 1_555 X C 94 A O2 C 94 1_555 hydrog WATSON-CRICK X G 41 A O6 G 41 1_555 X C 94 A N4 C 94 1_555 hydrog G-U MISPAIR X G 42 A N1 G 42 1_555 X U 93 A O2 U 93 1_555 hydrog WATSON-CRICK X G 43 A N1 G 43 1_555 X C 92 A N3 C 92 1_555 hydrog WATSON-CRICK X G 43 A N2 G 43 1_555 X C 92 A O2 C 92 1_555 hydrog WATSON-CRICK X G 43 A O6 G 43 1_555 X C 92 A N4 C 92 1_555 hydrog WATSON-CRICK X A 44 A N1 A 44 1_555 X U 91 A N3 U 91 1_555 hydrog WATSON-CRICK X A 44 A N6 A 44 1_555 X U 91 A O4 U 91 1_555 hydrog G-U MISPAIR X G 45 A N2 G 45 1_555 X U 91 A O4 U 91 1_555 hydrog A-G MISPAIR X A 61 A N3 A 61 1_555 X G 74 A N2 G 74 1_555 hydrog WATSON-CRICK X C 62 A N3 C 62 1_555 X G 73 A N1 G 73 1_555 hydrog WATSON-CRICK X C 62 A N4 C 62 1_555 X G 73 A O6 G 73 1_555 hydrog WATSON-CRICK X C 62 A O2 C 62 1_555 X G 73 A N2 G 73 1_555 hydrog WATSON-CRICK X A 63 A N1 A 63 1_555 X U 72 A N3 U 72 1_555 hydrog WATSON-CRICK X A 63 A N6 A 63 1_555 X U 72 A O4 U 72 1_555 hydrog WATSON-CRICK X C 64 A N3 C 64 1_555 X G 71 A N1 G 71 1_555 hydrog WATSON-CRICK X C 64 A N4 C 64 1_555 X G 71 A O6 G 71 1_555 hydrog WATSON-CRICK X C 64 A O2 C 64 1_555 X G 71 A N2 G 71 1_555 hydrog WATSON-CRICK X C 65 A N3 C 65 1_555 X G 70 A N1 G 70 1_555 hydrog WATSON-CRICK X C 65 A N4 C 65 1_555 X G 70 A O6 G 70 1_555 hydrog WATSON-CRICK X C 65 A O2 C 65 1_555 X G 70 A N2 G 70 1_555 hydrog G-A MISPAIR X G 66 A N2 G 66 1_555 X A 69 A N7 A 69 1_555 RNA three-way junction, pseudoknot, gene regulator, RNA 3SUY PDB 1 3SUY 1 101 3SUY 1 101 3SUY X 1 1 101 155 H 3 2