0.017538
0.000000
0.000000
0.000000
0.013790
0.000000
0.000000
0.000000
0.012828
0.00000
0.00000
0.00000
Klei, H.E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
57.018
72.515
77.956
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C28 H29 Cl N4 O5 S
569.072
6-chloro-N-((3S)-2-oxo-1-(2-oxo-2-((5S)-8-oxo-5,6-dihydro-1H-1,5-methanopyrido[1,2-a][1,5]diazocin-3(2H,4H,8H)-yl)ethyl)piperidin-3-yl)naphthalene-2-sulfonamide
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CA
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
Y
89
N
C
Y
90
N
C
Y
91
N
C
Y
92
N
C
Y
93
N
C
Y
94
N
C
Y
95
N
C
Y
96
N
C
Y
97
N
C
Y
98
N
C
N
99
N
C
N
100
N
C
N
101
N
C
N
102
N
C
N
103
N
C
N
104
N
C
N
105
N
C
N
106
N
C
N
107
N
C
N
108
N
C
N
109
N
C
N
110
N
C
N
111
N
C
N
112
N
C
N
113
R
C
N
114
S
C
N
115
S
C
N
116
N
C
N
117
N
N
N
118
N
N
N
119
N
N
N
120
N
N
N
121
N
O
N
122
N
O
N
123
N
O
N
124
N
O
N
125
N
O
N
126
N
S
N
127
N
CL
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
N
N
158
S
C
N
159
N
C
N
160
N
O
N
161
N
C
N
162
N
C
N
163
N
C
N
164
N
O
N
165
N
N
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
N
N
178
S
C
N
179
N
C
N
180
N
O
N
181
N
C
N
182
N
C
N
183
N
C
N
184
N
O
N
185
N
O
N
186
N
O
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
N
N
197
N
C
N
198
N
C
N
199
N
O
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
C
N
207
N
O
N
208
N
C
N
209
N
O
N
210
N
C
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
N
N
221
S
C
N
222
N
C
N
223
N
O
N
224
N
C
Y
225
N
C
Y
226
N
N
Y
227
N
C
Y
228
N
C
Y
229
N
N
N
230
N
O
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
O
N
242
N
H
N
243
N
H
N
244
N
N
N
245
S
C
N
246
N
C
N
247
N
O
N
248
S
C
N
249
N
C
N
250
N
C
N
251
N
C
N
252
N
O
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
N
N
267
S
C
N
268
N
C
N
269
N
O
N
270
N
C
N
271
N
C
N
272
N
C
N
273
N
C
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
N
N
289
S
C
N
290
N
C
N
291
N
O
N
292
N
C
N
293
N
C
N
294
N
C
N
295
N
C
N
296
N
N
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
N
N
314
S
C
N
315
N
C
N
316
N
O
N
317
N
C
N
318
N
C
N
319
N
S
N
320
N
C
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
NA
N
334
N
N
N
335
S
C
N
336
N
C
N
337
N
O
N
338
N
C
Y
339
N
C
Y
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
C
N
345
N
O
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
N
N
358
S
C
N
359
N
C
N
360
N
O
N
361
N
C
N
362
N
C
N
363
N
C
N
364
N
O
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
N
N
375
S
C
N
376
N
C
N
377
N
O
N
378
N
C
N
379
N
O
N
380
N
O
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
N
N
389
S
C
N
390
N
C
N
391
N
O
N
392
R
C
N
393
N
O
N
394
N
C
N
395
N
O
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
N
N
406
S
C
N
407
N
C
N
408
N
O
N
409
N
C
Y
410
N
C
Y
411
N
C
Y
412
N
C
Y
413
N
N
Y
414
N
C
Y
415
N
C
Y
416
N
C
Y
417
N
C
Y
418
N
C
N
419
N
O
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
N
N
433
S
C
N
434
N
C
N
435
N
O
N
436
N
C
Y
437
N
C
Y
438
N
C
Y
439
N
C
Y
440
N
C
Y
441
N
C
Y
442
N
C
N
443
N
O
N
444
N
O
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
N
N
457
S
C
N
458
N
C
N
459
N
O
N
460
N
C
N
461
N
C
N
462
N
C
N
463
N
O
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
Y
83
N
doub
Y
84
N
sing
Y
85
N
doub
Y
86
N
sing
Y
87
N
sing
Y
88
N
sing
Y
89
N
sing
Y
90
N
doub
Y
91
N
sing
Y
92
N
doub
Y
93
N
doub
N
94
N
sing
N
95
N
sing
N
96
N
doub
N
97
N
sing
N
98
N
sing
N
99
N
doub
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
doub
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
doub
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
doub
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
doub
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
doub
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
Y
226
N
sing
Y
227
N
doub
Y
228
N
doub
N
229
N
sing
Y
230
N
sing
N
231
N
sing
Y
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
doub
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
doub
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
doub
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
Y
334
N
doub
Y
335
N
sing
Y
336
N
sing
N
337
N
sing
Y
338
N
doub
N
339
N
sing
Y
340
N
doub
N
341
N
sing
Y
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
doub
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
doub
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
doub
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
doub
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
Y
403
N
doub
Y
404
N
sing
Y
405
N
sing
N
406
N
sing
Y
407
N
doub
Y
408
N
sing
Y
409
N
sing
N
410
N
sing
Y
411
N
sing
Y
412
N
doub
N
413
N
sing
Y
414
N
doub
N
415
N
sing
Y
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
doub
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
Y
431
N
doub
Y
432
N
sing
Y
433
N
sing
N
434
N
sing
Y
435
N
doub
N
436
N
sing
Y
437
N
doub
N
438
N
sing
Y
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
doub
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
UK
Bioorg.Med.Chem.Lett.
BMCLE8
1127
0960-894X
21
7516
7521
10.1016/j.bmcl.2011.06.098
22041058
Arylsulfonamidopiperidone derivatives as a novel class of factor Xa inhibitors.
2011
10.2210/pdb3sw2/pdb
pdb_00003sw2
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2009-06-19
ADSC QUANTUM 210
SINGLE WAVELENGTH
M
x-ray
1
1.00000
1.0
17-BM
APS
1.00000
SYNCHROTRON
APS BEAMLINE 17-BM
10213.346
Coagulation factor X
3.4.21.6
Factor X light chain (UNP residues 85-178)
1
nat
polymer
26871.623
Coagulation factor X
3.4.21.6
Activated factor Xa heavy chain (UNP residues 235-472)
1
nat
polymer
569.072
6-chloro-N-((3S)-2-oxo-1-(2-oxo-2-((5S)-8-oxo-5,6-dihydro-1H-1,5-methanopyrido[1,2-a][1,5]diazocin-3(2H,4H,8H)-yl)ethyl)piperidin-3-yl)naphthalene-2-sulfonamide
1
syn
non-polymer
22.990
SODIUM ION
1
syn
non-polymer
40.078
CALCIUM ION
1
syn
non-polymer
92.094
GLYCEROL
1
syn
non-polymer
18.015
water
83
nat
water
Stuart factor, Stuart-Prower factor
Stuart factor, Stuart-Prower factor
no
no
KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC
IPTGPYPCGKQTLE
KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC
IPTGPYPCGKQTLE
A
polypeptide(L)
no
no
IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRF
TKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS
SFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMKTRGLP
IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRF
TKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS
SFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMKTRGLP
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
9606
Homo sapiens
blood
human
sample
9606
Homo sapiens
blood
1
2.17
43.39
VAPOR DIFFUSION, HANGING DROP
6.0
15-22% w/v PEG5000 MME, 0.01 M calcium acetate, 0.35 M sodium acetate, 0.1 M lithium sulfate, 0.1 M MES, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2011-11-16
1
1
2011-12-07
1
2
2023-09-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
X-ray crystal structure of human FXA in complex with methyl (2Z)-3-[(3-chloro-1H-indol-7-yl)amino]-2-cyano-3-{[(3S)-2-oxo-1-(2-oxo-2-pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
X-ray crystal structure of human FXA in complex with (S)-N-((2-methylbenzofuran-5-ylamino)(2-oxo-1-(2-oxo-2- (pyrrolidin-1-yl)ethyl)azepan-3-ylamino)methylene)nicotinamide
X-ray crystal structure of human FXA in complex with (S)-2-cyano-1-(2-methylbenzofuran-5-yl)-3-(2-oxo-1-(2-oxo-2-(pyrrolidin-1-yl)ethyl)azepan-3-yl)guanidine
RCSB
Y
RCSB
2011-07-13
REL
REL
FI1
6-chloro-N-((3S)-2-oxo-1-(2-oxo-2-((5S)-8-oxo-5,6-dihydro-1H-1,5-methanopyrido[1,2-a][1,5]diazocin-3(2H,4H,8H)-yl)ethyl)piperidin-3-yl)naphthalene-2-sulfonamide
NA
SODIUM ION
CA
CALCIUM ION
GOL
GLYCEROL
HOH
water
3ENS
PDB ENTRY 3ENS
PDB
experimental model
FI1
1
3
FI1
FI1
1
B
NA
1
4
NA
NA
249
B
CA
2
5
CA
CA
2
B
GOL
8
6
GOL
GOL
8
B
HOH
4
7
HOH
HOH
4
A
HOH
17
7
HOH
HOH
17
A
HOH
25
7
HOH
HOH
25
A
HOH
42
7
HOH
HOH
42
A
HOH
45
7
HOH
HOH
45
A
HOH
46
7
HOH
HOH
46
A
HOH
52
7
HOH
HOH
52
A
HOH
58
7
HOH
HOH
58
A
HOH
99
7
HOH
HOH
179
A
HOH
107
7
HOH
HOH
180
A
HOH
113
7
HOH
HOH
181
A
HOH
114
7
HOH
HOH
182
A
HOH
116
7
HOH
HOH
183
A
HOH
128
7
HOH
HOH
184
A
HOH
131
7
HOH
HOH
185
A
HOH
146
7
HOH
HOH
186
A
HOH
157
7
HOH
HOH
187
A
HOH
158
7
HOH
HOH
188
A
HOH
160
7
HOH
HOH
189
A
HOH
166
7
HOH
HOH
190
A
HOH
168
7
HOH
HOH
191
A
HOH
170
7
HOH
HOH
192
A
HOH
3
7
HOH
HOH
3
B
HOH
5
7
HOH
HOH
5
B
HOH
6
7
HOH
HOH
6
B
HOH
9
7
HOH
HOH
9
B
HOH
10
7
HOH
HOH
10
B
HOH
11
7
HOH
HOH
11
B
HOH
12
7
HOH
HOH
12
B
HOH
13
7
HOH
HOH
13
B
HOH
14
7
HOH
HOH
14
B
HOH
15
7
HOH
HOH
15
B
HOH
1
7
HOH
HOH
250
B
HOH
2
7
HOH
HOH
251
B
HOH
8
7
HOH
HOH
252
B
HOH
20
7
HOH
HOH
253
B
HOH
21
7
HOH
HOH
254
B
HOH
23
7
HOH
HOH
255
B
HOH
24
7
HOH
HOH
256
B
HOH
26
7
HOH
HOH
257
B
HOH
28
7
HOH
HOH
258
B
HOH
29
7
HOH
HOH
259
B
HOH
30
7
HOH
HOH
260
B
HOH
32
7
HOH
HOH
261
B
HOH
33
7
HOH
HOH
262
B
HOH
34
7
HOH
HOH
263
B
HOH
36
7
HOH
HOH
264
B
HOH
37
7
HOH
HOH
265
B
HOH
43
7
HOH
HOH
266
B
HOH
48
7
HOH
HOH
267
B
HOH
57
7
HOH
HOH
268
B
HOH
60
7
HOH
HOH
269
B
HOH
73
7
HOH
HOH
270
B
HOH
76
7
HOH
HOH
271
B
HOH
83
7
HOH
HOH
272
B
HOH
84
7
HOH
HOH
273
B
HOH
86
7
HOH
HOH
274
B
HOH
87
7
HOH
HOH
275
B
HOH
91
7
HOH
HOH
276
B
HOH
97
7
HOH
HOH
277
B
HOH
98
7
HOH
HOH
278
B
HOH
101
7
HOH
HOH
279
B
HOH
105
7
HOH
HOH
280
B
HOH
112
7
HOH
HOH
281
B
HOH
120
7
HOH
HOH
282
B
HOH
124
7
HOH
HOH
283
B
HOH
127
7
HOH
HOH
284
B
HOH
132
7
HOH
HOH
285
B
HOH
134
7
HOH
HOH
286
B
HOH
136
7
HOH
HOH
287
B
HOH
139
7
HOH
HOH
288
B
HOH
143
7
HOH
HOH
289
B
HOH
145
7
HOH
HOH
290
B
HOH
152
7
HOH
HOH
291
B
HOH
154
7
HOH
HOH
292
B
HOH
159
7
HOH
HOH
293
B
HOH
161
7
HOH
HOH
294
B
HOH
162
7
HOH
HOH
295
B
HOH
163
7
HOH
HOH
296
B
HOH
164
7
HOH
HOH
297
B
HOH
165
7
HOH
HOH
298
B
HOH
167
7
HOH
HOH
299
B
HOH
169
7
HOH
HOH
300
B
n
1
85
A
n
2
86
A
n
3
87
A
n
4
88
A
n
5
89
A
n
6
90
A
n
7
91
A
n
8
92
A
n
9
93
A
n
10
94
A
n
11
95
A
n
12
96
A
n
13
97
A
n
14
98
A
n
15
99
A
n
16
100
A
n
17
101
A
n
18
102
A
n
19
103
A
n
20
104
A
n
21
105
A
n
22
106
A
n
23
107
A
n
24
108
A
n
25
109
A
n
26
110
A
n
27
111
A
n
28
112
A
n
29
113
A
n
30
114
A
n
31
115
A
n
32
116
A
n
33
117
A
n
34
118
A
n
35
119
A
n
36
120
A
n
37
121
A
GLU
122
n
38
GLU
122
A
LEU
123
n
39
LEU
123
A
PHE
124
n
40
PHE
124
A
THR
125
n
41
THR
125
A
ARG
126
n
42
ARG
126
A
LYS
127
n
43
LYS
127
A
LEU
128
n
44
LEU
128
A
CYS
129
n
45
CYS
129
A
SER
130
n
46
SER
130
A
LEU
131
n
47
LEU
131
A
ASP
132
n
48
ASP
132
A
ASN
133
n
49
ASN
133
A
GLY
134
n
50
GLY
134
A
ASP
135
n
51
ASP
135
A
CYS
136
n
52
CYS
136
A
ASP
137
n
53
ASP
137
A
GLN
138
n
54
GLN
138
A
PHE
139
n
55
PHE
139
A
CYS
140
n
56
CYS
140
A
HIS
141
n
57
HIS
141
A
GLU
142
n
58
GLU
142
A
GLU
143
n
59
GLU
143
A
GLN
144
n
60
GLN
144
A
ASN
145
n
61
ASN
145
A
SER
146
n
62
SER
146
A
VAL
147
n
63
VAL
147
A
VAL
148
n
64
VAL
148
A
CYS
149
n
65
CYS
149
A
SER
150
n
66
SER
150
A
CYS
151
n
67
CYS
151
A
ALA
152
n
68
ALA
152
A
ARG
153
n
69
ARG
153
A
GLY
154
n
70
GLY
154
A
TYR
155
n
71
TYR
155
A
THR
156
n
72
THR
156
A
LEU
157
n
73
LEU
157
A
ALA
158
n
74
ALA
158
A
ASP
159
n
75
ASP
159
A
ASN
160
n
76
ASN
160
A
GLY
161
n
77
GLY
161
A
LYS
162
n
78
LYS
162
A
ALA
163
n
79
ALA
163
A
CYS
164
n
80
CYS
164
A
ILE
165
n
81
ILE
165
A
PRO
166
n
82
PRO
166
A
THR
167
n
83
THR
167
A
GLY
168
n
84
GLY
168
A
PRO
169
n
85
PRO
169
A
TYR
170
n
86
TYR
170
A
PRO
171
n
87
PRO
171
A
CYS
172
n
88
CYS
172
A
GLY
173
n
89
GLY
173
A
LYS
174
n
90
LYS
174
A
GLN
175
n
91
GLN
175
A
THR
176
n
92
THR
176
A
LEU
177
n
93
LEU
177
A
n
94
178
A
ILE
16
n
1
ILE
16
B
VAL
17
n
2
VAL
17
B
GLY
18
n
3
GLY
18
B
GLY
19
n
4
GLY
19
B
GLN
20
n
5
GLN
20
B
GLU
21
n
6
GLU
21
B
CYS
22
n
7
CYS
22
B
LYS
23
n
8
LYS
23
B
ASP
24
n
9
ASP
24
B
GLY
25
n
10
GLY
25
B
GLU
26
n
11
GLU
26
B
CYS
27
n
12
CYS
27
B
PRO
28
n
13
PRO
28
B
TRP
29
n
14
TRP
29
B
GLN
30
n
15
GLN
30
B
ALA
31
n
16
ALA
31
B
LEU
32
n
17
LEU
32
B
LEU
33
n
18
LEU
33
B
ILE
34
n
19
ILE
34
B
ASN
35
n
20
ASN
35
B
GLU
36
n
21
GLU
36
B
GLU
37
n
22
GLU
37
B
ASN
38
n
23
ASN
38
B
GLU
39
n
24
GLU
39
B
GLY
40
n
25
GLY
40
B
PHE
41
n
26
PHE
41
B
CYS
42
n
27
CYS
42
B
GLY
43
n
28
GLY
43
B
GLY
44
n
29
GLY
44
B
THR
45
n
30
THR
45
B
ILE
46
n
31
ILE
46
B
LEU
47
n
32
LEU
47
B
SER
48
n
33
SER
48
B
GLU
49
n
34
GLU
49
B
PHE
50
n
35
PHE
50
B
TYR
51
n
36
TYR
51
B
ILE
52
n
37
ILE
52
B
LEU
53
n
38
LEU
53
B
THR
54
n
39
THR
54
B
ALA
55
n
40
ALA
55
B
ALA
56
n
41
ALA
56
B
HIS
57
n
42
HIS
57
B
CYS
58
n
43
CYS
58
B
LEU
59
n
44
LEU
59
B
TYR
60
n
45
TYR
60
B
GLN
61
n
46
GLN
61
B
ALA
61
n
47
A
ALA
61
B
LYS
62
n
48
LYS
62
B
ARG
63
n
49
ARG
63
B
PHE
64
n
50
PHE
64
B
LYS
65
n
51
LYS
65
B
VAL
66
n
52
VAL
66
B
ARG
67
n
53
ARG
67
B
VAL
68
n
54
VAL
68
B
GLY
69
n
55
GLY
69
B
ASP
70
n
56
ASP
70
B
ARG
71
n
57
ARG
71
B
ASN
72
n
58
ASN
72
B
THR
73
n
59
THR
73
B
GLU
74
n
60
GLU
74
B
GLN
75
n
61
GLN
75
B
GLU
76
n
62
GLU
76
B
GLU
77
n
63
GLU
77
B
GLY
78
n
64
GLY
78
B
GLY
79
n
65
GLY
79
B
GLU
80
n
66
GLU
80
B
ALA
81
n
67
ALA
81
B
VAL
82
n
68
VAL
82
B
HIS
83
n
69
HIS
83
B
GLU
84
n
70
GLU
84
B
VAL
85
n
71
VAL
85
B
GLU
86
n
72
GLU
86
B
VAL
87
n
73
VAL
87
B
VAL
88
n
74
VAL
88
B
ILE
89
n
75
ILE
89
B
LYS
90
n
76
LYS
90
B
HIS
91
n
77
HIS
91
B
ASN
92
n
78
ASN
92
B
ARG
93
n
79
ARG
93
B
PHE
94
n
80
PHE
94
B
THR
95
n
81
THR
95
B
LYS
96
n
82
LYS
96
B
GLU
97
n
83
GLU
97
B
THR
98
n
84
THR
98
B
TYR
99
n
85
TYR
99
B
ASP
100
n
86
ASP
100
B
PHE
101
n
87
PHE
101
B
ASP
102
n
88
ASP
102
B
ILE
103
n
89
ILE
103
B
ALA
104
n
90
ALA
104
B
VAL
105
n
91
VAL
105
B
LEU
106
n
92
LEU
106
B
ARG
107
n
93
ARG
107
B
LEU
108
n
94
LEU
108
B
LYS
109
n
95
LYS
109
B
THR
110
n
96
THR
110
B
PRO
111
n
97
PRO
111
B
ILE
112
n
98
ILE
112
B
THR
113
n
99
THR
113
B
PHE
114
n
100
PHE
114
B
ARG
115
n
101
ARG
115
B
MET
116
n
102
MET
116
B
ASN
117
n
103
ASN
117
B
VAL
118
n
104
VAL
118
B
ALA
119
n
105
ALA
119
B
PRO
120
n
106
PRO
120
B
ALA
121
n
107
ALA
121
B
CYS
122
n
108
CYS
122
B
LEU
123
n
109
LEU
123
B
PRO
124
n
110
PRO
124
B
GLU
124
n
111
A
GLU
124
B
ARG
125
n
112
ARG
125
B
ASP
126
n
113
ASP
126
B
TRP
127
n
114
TRP
127
B
ALA
128
n
115
ALA
128
B
GLU
129
n
116
GLU
129
B
SER
130
n
117
SER
130
B
THR
131
n
118
THR
131
B
LEU
131
n
119
A
LEU
131
B
MET
131
n
120
B
MET
131
B
THR
132
n
121
THR
132
B
GLN
133
n
122
GLN
133
B
LYS
134
n
123
LYS
134
B
THR
135
n
124
THR
135
B
GLY
136
n
125
GLY
136
B
ILE
137
n
126
ILE
137
B
VAL
138
n
127
VAL
138
B
SER
139
n
128
SER
139
B
GLY
140
n
129
GLY
140
B
PHE
141
n
130
PHE
141
B
GLY
142
n
131
GLY
142
B
ARG
143
n
132
ARG
143
B
THR
144
n
133
THR
144
B
HIS
145
n
134
HIS
145
B
GLU
147
n
135
GLU
147
B
LYS
148
n
136
LYS
148
B
GLY
149
n
137
GLY
149
B
ARG
150
n
138
ARG
150
B
GLN
151
n
139
GLN
151
B
SER
152
n
140
SER
152
B
THR
153
n
141
THR
153
B
ARG
154
n
142
ARG
154
B
LEU
155
n
143
LEU
155
B
LYS
156
n
144
LYS
156
B
MET
157
n
145
MET
157
B
LEU
158
n
146
LEU
158
B
GLU
159
n
147
GLU
159
B
VAL
160
n
148
VAL
160
B
PRO
161
n
149
PRO
161
B
TYR
162
n
150
TYR
162
B
VAL
163
n
151
VAL
163
B
ASP
164
n
152
ASP
164
B
ARG
165
n
153
ARG
165
B
ASN
166
n
154
ASN
166
B
SER
167
n
155
SER
167
B
CYS
168
n
156
CYS
168
B
LYS
169
n
157
LYS
169
B
LEU
170
n
158
LEU
170
B
SER
171
n
159
SER
171
B
SER
172
n
160
SER
172
B
SER
173
n
161
SER
173
B
PHE
174
n
162
PHE
174
B
ILE
175
n
163
ILE
175
B
ILE
176
n
164
ILE
176
B
THR
177
n
165
THR
177
B
GLN
178
n
166
GLN
178
B
ASN
179
n
167
ASN
179
B
MET
180
n
168
MET
180
B
PHE
181
n
169
PHE
181
B
CYS
182
n
170
CYS
182
B
ALA
183
n
171
ALA
183
B
GLY
184
n
172
GLY
184
B
TYR
185
n
173
TYR
185
B
ASP
185
n
174
A
ASP
185
B
THR
185
n
175
B
THR
185
B
LYS
186
n
176
LYS
186
B
GLN
187
n
177
GLN
187
B
GLU
188
n
178
GLU
188
B
ASP
189
n
179
ASP
189
B
ALA
190
n
180
ALA
190
B
CYS
191
n
181
CYS
191
B
GLN
192
n
182
GLN
192
B
GLY
193
n
183
GLY
193
B
ASP
194
n
184
ASP
194
B
SER
195
n
185
SER
195
B
GLY
196
n
186
GLY
196
B
GLY
197
n
187
GLY
197
B
PRO
198
n
188
PRO
198
B
HIS
199
n
189
HIS
199
B
VAL
200
n
190
VAL
200
B
THR
201
n
191
THR
201
B
ARG
202
n
192
ARG
202
B
PHE
203
n
193
PHE
203
B
LYS
204
n
194
LYS
204
B
ASP
205
n
195
ASP
205
B
THR
206
n
196
THR
206
B
TYR
207
n
197
TYR
207
B
PHE
208
n
198
PHE
208
B
VAL
209
n
199
VAL
209
B
THR
210
n
200
THR
210
B
GLY
211
n
201
GLY
211
B
ILE
212
n
202
ILE
212
B
VAL
213
n
203
VAL
213
B
SER
214
n
204
SER
214
B
TRP
215
n
205
TRP
215
B
GLY
216
n
206
GLY
216
B
GLU
217
n
207
GLU
217
B
GLY
218
n
208
GLY
218
B
CYS
220
n
209
CYS
220
B
ALA
221
n
210
ALA
221
B
ARG
222
n
211
ARG
222
B
LYS
223
n
212
LYS
223
B
GLY
223
n
213
A
GLY
223
B
LYS
224
n
214
LYS
224
B
TYR
225
n
215
TYR
225
B
GLY
226
n
216
GLY
226
B
ILE
227
n
217
ILE
227
B
TYR
228
n
218
TYR
228
B
THR
229
n
219
THR
229
B
LYS
230
n
220
LYS
230
B
VAL
231
n
221
VAL
231
B
THR
232
n
222
THR
232
B
ALA
233
n
223
ALA
233
B
PHE
234
n
224
PHE
234
B
LEU
235
n
225
LEU
235
B
LYS
236
n
226
LYS
236
B
TRP
237
n
227
TRP
237
B
ILE
238
n
228
ILE
238
B
ASP
239
n
229
ASP
239
B
ARG
240
n
230
ARG
240
B
SER
241
n
231
SER
241
B
MET
242
n
232
MET
242
B
LYS
243
n
233
LYS
243
B
n
234
244
B
n
235
245
B
n
236
246
B
n
237
247
B
n
238
248
B
author_and_software_defined_assembly
PISA
2
dimeric
2160
-35
12620
B
ASP
70
B
OD1
ASP
56
1_555
B
CA
2
E
CA
CA
1_555
B
ASN
72
B
O
ASN
58
1_555
95.1
B
ASP
70
B
OD1
ASP
56
1_555
B
CA
2
E
CA
CA
1_555
B
GLN
75
B
O
GLN
61
1_555
136.2
B
ASN
72
B
O
ASN
58
1_555
B
CA
2
E
CA
CA
1_555
B
GLN
75
B
O
GLN
61
1_555
75.7
B
ASP
70
B
OD1
ASP
56
1_555
B
CA
2
E
CA
CA
1_555
B
GLU
80
B
OE1
GLU
66
1_555
72.7
B
ASN
72
B
O
ASN
58
1_555
B
CA
2
E
CA
CA
1_555
B
GLU
80
B
OE1
GLU
66
1_555
154.2
B
GLN
75
B
O
GLN
61
1_555
B
CA
2
E
CA
CA
1_555
B
GLU
80
B
OE1
GLU
66
1_555
97.1
B
TYR
185
B
O
TYR
173
1_555
B
NA
249
D
NA
NA
1_555
A
B
ASP
185
B
O
ASP
174
1_555
74.1
B
TYR
185
B
O
TYR
173
1_555
B
NA
249
D
NA
NA
1_555
B
ARG
222
B
O
ARG
211
1_555
148.5
A
B
ASP
185
B
O
ASP
174
1_555
B
NA
249
D
NA
NA
1_555
B
ARG
222
B
O
ARG
211
1_555
75.4
B
TYR
185
B
O
TYR
173
1_555
B
NA
249
D
NA
NA
1_555
B
LYS
224
B
O
LYS
214
1_555
92.0
A
B
ASP
185
B
O
ASP
174
1_555
B
NA
249
D
NA
NA
1_555
B
LYS
224
B
O
LYS
214
1_555
101.6
B
ARG
222
B
O
ARG
211
1_555
B
NA
249
D
NA
NA
1_555
B
LYS
224
B
O
LYS
214
1_555
86.5
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
HIS
141
A
N
HIS
57
A
O
VAL
148
A
O
VAL
64
A
N
THR
156
A
N
THR
72
A
O
ILE
165
A
O
ILE
81
B
N
GLN
20
B
N
GLN
5
B
O
MET
157
B
O
MET
145
B
O
VAL
160
B
O
VAL
148
B
N
GLY
136
B
N
GLY
125
B
N
ILE
137
B
N
ILE
126
B
O
VAL
200
B
O
VAL
190
B
N
PHE
203
B
N
PHE
193
B
O
THR
206
B
O
THR
196
B
N
TRP
215
B
N
TRP
205
B
O
ILE
227
B
O
ILE
217
B
O
TYR
228
B
O
TYR
218
B
N
PHE
181
B
N
PHE
169
B
N
LEU
33
B
N
LEU
18
B
O
CYS
42
B
O
CYS
27
B
N
THR
45
B
N
THR
30
B
O
LEU
53
B
O
LEU
38
B
N
ILE
52
B
N
ILE
37
B
O
LEU
106
B
O
LEU
92
B
O
ARG
107
B
O
ARG
93
B
N
GLU
86
B
N
GLU
72
B
O
HIS
83
B
O
HIS
69
B
N
VAL
66
B
N
VAL
52
B
O
ARG
67
B
O
ARG
53
B
N
LEU
32
B
N
LEU
17
1
A
CG
GLU
122
A
CG
GLU
38
1
Y
1
A
CD
GLU
122
A
CD
GLU
38
1
Y
1
A
OE1
GLU
122
A
OE1
GLU
38
1
Y
1
A
OE2
GLU
122
A
OE2
GLU
38
1
Y
1
A
CG
LEU
123
A
CG
LEU
39
1
Y
1
A
CD1
LEU
123
A
CD1
LEU
39
1
Y
1
A
CD2
LEU
123
A
CD2
LEU
39
1
Y
1
A
OG1
THR
125
A
OG1
THR
41
1
Y
1
A
CG2
THR
125
A
CG2
THR
41
1
Y
1
A
CG
ARG
126
A
CG
ARG
42
1
Y
1
A
CD
ARG
126
A
CD
ARG
42
1
Y
1
A
NE
ARG
126
A
NE
ARG
42
1
Y
1
A
CZ
ARG
126
A
CZ
ARG
42
1
Y
1
A
NH1
ARG
126
A
NH1
ARG
42
1
Y
1
A
NH2
ARG
126
A
NH2
ARG
42
1
Y
1
A
CD
LYS
127
A
CD
LYS
43
1
Y
1
A
CE
LYS
127
A
CE
LYS
43
1
Y
1
A
NZ
LYS
127
A
NZ
LYS
43
1
Y
1
A
CD1
LEU
131
A
CD1
LEU
47
1
Y
1
A
CD2
LEU
131
A
CD2
LEU
47
1
Y
1
A
CG
GLU
143
A
CG
GLU
59
1
Y
1
A
CD
GLU
143
A
CD
GLU
59
1
Y
1
A
OE1
GLU
143
A
OE1
GLU
59
1
Y
1
A
OE2
GLU
143
A
OE2
GLU
59
1
Y
1
A
CG
GLN
144
A
CG
GLN
60
1
Y
1
A
CD
GLN
144
A
CD
GLN
60
1
Y
1
A
OE1
GLN
144
A
OE1
GLN
60
1
Y
1
A
NE2
GLN
144
A
NE2
GLN
60
1
Y
1
A
CG
ASN
145
A
CG
ASN
61
1
Y
1
A
OD1
ASN
145
A
OD1
ASN
61
1
Y
1
A
ND2
ASN
145
A
ND2
ASN
61
1
Y
1
A
CD
ARG
153
A
CD
ARG
69
1
Y
1
A
NE
ARG
153
A
NE
ARG
69
1
Y
1
A
CZ
ARG
153
A
CZ
ARG
69
1
Y
1
A
NH1
ARG
153
A
NH1
ARG
69
1
Y
1
A
NH2
ARG
153
A
NH2
ARG
69
1
Y
1
B
CD
GLN
20
B
CD
GLN
5
1
Y
1
B
OE1
GLN
20
B
OE1
GLN
5
1
Y
1
B
NE2
GLN
20
B
NE2
GLN
5
1
Y
1
B
CD
GLU
36
B
CD
GLU
21
1
Y
1
B
OE1
GLU
36
B
OE1
GLU
21
1
Y
1
B
OE2
GLU
36
B
OE2
GLU
21
1
Y
1
B
CG
GLU
37
B
CG
GLU
22
1
Y
1
B
CD
GLU
37
B
CD
GLU
22
1
Y
1
B
OE1
GLU
37
B
OE1
GLU
22
1
Y
1
B
OE2
GLU
37
B
OE2
GLU
22
1
Y
1
B
OD1
ASN
38
B
OD1
ASN
23
1
Y
1
B
ND2
ASN
38
B
ND2
ASN
23
1
Y
1
B
CG
GLU
39
B
CG
GLU
24
1
Y
1
B
CD
GLU
39
B
CD
GLU
24
1
Y
1
B
OE1
GLU
39
B
OE1
GLU
24
1
Y
1
B
OE2
GLU
39
B
OE2
GLU
24
1
Y
1
B
CG
LYS
62
B
CG
LYS
48
1
Y
1
B
CD
LYS
62
B
CD
LYS
48
1
Y
1
B
CE
LYS
62
B
CE
LYS
48
1
Y
1
B
NZ
LYS
62
B
NZ
LYS
48
1
Y
1
B
CG
ARG
63
B
CG
ARG
49
1
Y
1
B
CD
ARG
63
B
CD
ARG
49
1
Y
1
B
NE
ARG
63
B
NE
ARG
49
1
Y
1
B
CZ
ARG
63
B
CZ
ARG
49
1
Y
1
B
NH1
ARG
63
B
NH1
ARG
49
1
Y
1
B
NH2
ARG
63
B
NH2
ARG
49
1
Y
1
B
CG
GLN
75
B
CG
GLN
61
1
Y
1
B
CD
GLN
75
B
CD
GLN
61
1
Y
1
B
OE1
GLN
75
B
OE1
GLN
61
1
Y
1
B
NE2
GLN
75
B
NE2
GLN
61
1
Y
1
B
CG
GLU
77
B
CG
GLU
63
1
Y
1
B
CD
GLU
77
B
CD
GLU
63
1
Y
1
B
OE1
GLU
77
B
OE1
GLU
63
1
Y
1
B
OE2
GLU
77
B
OE2
GLU
63
1
Y
1
B
CD
LYS
90
B
CD
LYS
76
1
Y
1
B
CE
LYS
90
B
CE
LYS
76
1
Y
1
B
NZ
LYS
90
B
NZ
LYS
76
1
Y
1
B
CD
ARG
93
B
CD
ARG
79
1
Y
1
B
NE
ARG
93
B
NE
ARG
79
1
Y
1
B
CZ
ARG
93
B
CZ
ARG
79
1
Y
1
B
NH1
ARG
93
B
NH1
ARG
79
1
Y
1
B
NH2
ARG
93
B
NH2
ARG
79
1
Y
1
B
CD
LYS
96
B
CD
LYS
82
1
Y
1
B
CE
LYS
96
B
CE
LYS
82
1
Y
1
B
NZ
LYS
96
B
NZ
LYS
82
1
Y
1
B
CD
GLU
97
B
CD
GLU
83
1
Y
1
B
OE1
GLU
97
B
OE1
GLU
83
1
Y
1
B
OE2
GLU
97
B
OE2
GLU
83
1
Y
1
B
CD1
ILE
112
B
CD1
ILE
98
1
Y
1
B
NE
ARG
115
B
NE
ARG
101
1
Y
1
B
CZ
ARG
115
B
CZ
ARG
101
1
Y
1
B
NH1
ARG
115
B
NH1
ARG
101
1
Y
1
B
NH2
ARG
115
B
NH2
ARG
101
1
Y
1
B
CD
LYS
134
B
CD
LYS
123
1
Y
1
B
CE
LYS
134
B
CE
LYS
123
1
Y
1
B
NZ
LYS
134
B
NZ
LYS
123
1
Y
1
B
CG
LYS
148
B
CG
LYS
136
1
Y
1
B
CD
LYS
148
B
CD
LYS
136
1
Y
1
B
CE
LYS
148
B
CE
LYS
136
1
Y
1
B
NZ
LYS
148
B
NZ
LYS
136
1
Y
1
B
CG
ARG
150
B
CG
ARG
138
1
Y
1
B
CD
ARG
150
B
CD
ARG
138
1
Y
1
B
NE
ARG
150
B
NE
ARG
138
1
Y
1
B
CZ
ARG
150
B
CZ
ARG
138
1
Y
1
B
NH1
ARG
150
B
NH1
ARG
138
1
Y
1
B
NH2
ARG
150
B
NH2
ARG
138
1
Y
1
B
CG
ASN
166
B
CG
ASN
154
1
Y
1
B
OD1
ASN
166
B
OD1
ASN
154
1
Y
1
B
ND2
ASN
166
B
ND2
ASN
154
1
Y
1
B
CE
LYS
169
B
CE
LYS
157
1
Y
1
B
NZ
LYS
169
B
NZ
LYS
157
1
Y
1
B
CD1
ILE
175
B
CD1
ILE
163
1
Y
1
B
CG
GLN
187
B
CG
GLN
177
1
Y
1
B
CD
GLN
187
B
CD
GLN
177
1
Y
1
B
OE1
GLN
187
B
OE1
GLN
177
1
Y
1
B
NE2
GLN
187
B
NE2
GLN
177
1
Y
1
B
CZ
ARG
202
B
CZ
ARG
192
1
Y
1
B
NH1
ARG
202
B
NH1
ARG
192
1
Y
1
B
NH2
ARG
202
B
NH2
ARG
192
1
Y
1
B
CG
LYS
223
B
CG
LYS
212
1
Y
1
B
CD
LYS
223
B
CD
LYS
212
1
Y
1
B
CE
LYS
223
B
CE
LYS
212
1
Y
1
B
NZ
LYS
223
B
NZ
LYS
212
1
Y
1
B
CG
LYS
236
B
CG
LYS
226
1
Y
1
B
CD
LYS
236
B
CD
LYS
226
1
Y
1
B
CE
LYS
236
B
CE
LYS
226
1
Y
1
B
NZ
LYS
236
B
NZ
LYS
226
1
Y
1
B
CG
ARG
240
B
CG
ARG
230
1
Y
1
B
CD
ARG
240
B
CD
ARG
230
1
Y
1
B
NE
ARG
240
B
NE
ARG
230
1
Y
1
B
CZ
ARG
240
B
CZ
ARG
230
1
Y
1
B
NH1
ARG
240
B
NH1
ARG
230
1
Y
1
B
NH2
ARG
240
B
NH2
ARG
230
1
Y
1
B
CD
LYS
243
B
CD
LYS
233
1
Y
1
B
CE
LYS
243
B
CE
LYS
233
1
Y
1
B
NZ
LYS
243
B
NZ
LYS
233
1
Y
1
A
LYS
85
A
LYS
1
1
Y
1
A
ASP
86
A
ASP
2
1
Y
1
A
GLY
87
A
GLY
3
1
Y
1
A
ASP
88
A
ASP
4
1
Y
1
A
GLN
89
A
GLN
5
1
Y
1
A
CYS
90
A
CYS
6
1
Y
1
A
GLU
91
A
GLU
7
1
Y
1
A
THR
92
A
THR
8
1
Y
1
A
SER
93
A
SER
9
1
Y
1
A
PRO
94
A
PRO
10
1
Y
1
A
CYS
95
A
CYS
11
1
Y
1
A
GLN
96
A
GLN
12
1
Y
1
A
ASN
97
A
ASN
13
1
Y
1
A
GLN
98
A
GLN
14
1
Y
1
A
GLY
99
A
GLY
15
1
Y
1
A
LYS
100
A
LYS
16
1
Y
1
A
CYS
101
A
CYS
17
1
Y
1
A
LYS
102
A
LYS
18
1
Y
1
A
ASP
103
A
ASP
19
1
Y
1
A
GLY
104
A
GLY
20
1
Y
1
A
LEU
105
A
LEU
21
1
Y
1
A
GLY
106
A
GLY
22
1
Y
1
A
GLU
107
A
GLU
23
1
Y
1
A
TYR
108
A
TYR
24
1
Y
1
A
THR
109
A
THR
25
1
Y
1
A
CYS
110
A
CYS
26
1
Y
1
A
THR
111
A
THR
27
1
Y
1
A
CYS
112
A
CYS
28
1
Y
1
A
LEU
113
A
LEU
29
1
Y
1
A
GLU
114
A
GLU
30
1
Y
1
A
GLY
115
A
GLY
31
1
Y
1
A
PHE
116
A
PHE
32
1
Y
1
A
GLU
117
A
GLU
33
1
Y
1
A
GLY
118
A
GLY
34
1
Y
1
A
LYS
119
A
LYS
35
1
Y
1
A
ASN
120
A
ASN
36
1
Y
1
A
CYS
121
A
CYS
37
1
Y
1
A
GLU
178
A
GLU
94
1
Y
1
B
THR
244
B
THR
234
1
Y
1
B
ARG
245
B
ARG
235
1
Y
1
B
GLY
246
B
GLY
236
1
Y
1
B
LEU
247
B
LEU
237
1
Y
1
B
PRO
248
B
PRO
238
1
Y
1
A
LEU
128
50.17
-134.99
1
A
ASP
132
32.54
61.65
1
A
ASN
133
45.61
25.72
1
A
GLN
138
-126.94
-109.32
1
A
LYS
162
-123.76
-55.22
1
B
ASN
117
72.67
-0.60
1
B
LYS
148
-107.37
74.24
16.8290
-0.0000
0.0000
-1.7680
0.0000
22.1384
0.2623
0.1934
0.1992
2.420
32.876
1126
12724
8.85
99.32
0.39
1
1.36
MOLECULAR REPLACEMENT
25.88
0.90
1.11
PDB ENTRY 3ENS
ML
FLAT BULK SOLVENT MODEL
60.000
0.382
2.420
32.876
83
2264
47
0
2134
0.009
2264
1.085
3068
14.635
794
0.072
337
0.004
394
0.4004
0.2984
2.5303
133
1363
97.00
0.4053
0.2689
2.6636
138
1425
100.00
0.3276
0.2358
2.8304
140
1435
100.00
0.3335
0.2240
3.0488
141
1440
100.00
0.2855
0.1825
3.3554
141
1467
100.00
0.2370
0.1760
3.8403
140
1451
100.00
0.2173
0.1601
4.8359
145
1480
99.00
0.2302
0.1941
32.8786
148
1537
99.00
2.42
77.96
3SW2
12780
0
0.059
1
16.3
5.5
99.6
0.381
2.42
2.55
2.7
1
3.8
97.8
data collection
ADSC
Quantum
phasing
AMoRE
refinement
PHENIX
(PHENIX.REFINE: DEV_501)
data reduction
XDS
data scaling
SCALA
X-ray crystal structure of human FXA in complex with 6-chloro-N-((3S)-2-oxo-1-(2-oxo-2-((5S)-8-oxo-5,6-dihydro-1H-1,5-methanopyrido[1,2-a][1,5]diazocin-3(2H,4H,8H)-yl)ethyl)piperidin-3-yl)naphthalene-2-sulfonamide
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
7
N
N
7
N
N
A
LYS
127
A
LYS
43
HELX_P
A
CYS
136
A
CYS
52
5
1
10
B
ALA
55
B
ALA
40
HELX_P
B
TYR
60
B
TYR
45
1
2
6
B
GLU
124
B
GLU
111
HELX_P
B
THR
131
B
THR
118
1
3
8
A
B
ASP
164
B
ASP
152
HELX_P
B
SER
171
B
SER
159
1
4
8
B
PHE
234
B
PHE
224
HELX_P
B
MET
242
B
MET
232
1
5
9
disulf
2.039
A
CYS
129
A
SG
CYS
45
1_555
A
CYS
140
A
SG
CYS
56
1_555
disulf
2.023
A
CYS
136
A
SG
CYS
52
1_555
A
CYS
149
A
SG
CYS
65
1_555
disulf
2.076
A
CYS
151
A
SG
CYS
67
1_555
A
CYS
164
A
SG
CYS
80
1_555
disulf
2.058
A
CYS
172
A
SG
CYS
88
1_555
B
CYS
122
B
SG
CYS
108
1_555
disulf
2.053
B
CYS
22
B
SG
CYS
7
1_555
B
CYS
27
B
SG
CYS
12
1_555
disulf
2.060
B
CYS
42
B
SG
CYS
27
1_555
B
CYS
58
B
SG
CYS
43
1_555
disulf
2.038
B
CYS
168
B
SG
CYS
156
1_555
B
CYS
182
B
SG
CYS
170
1_555
disulf
2.028
B
CYS
191
B
SG
CYS
181
1_555
B
CYS
220
B
SG
CYS
209
1_555
metalc
2.460
B
CA
2
E
CA
CA
1_555
B
ASP
70
B
OD1
ASP
56
1_555
metalc
2.412
B
CA
2
E
CA
CA
1_555
B
ASN
72
B
O
ASN
58
1_555
metalc
2.515
B
CA
2
E
CA
CA
1_555
B
GLN
75
B
O
GLN
61
1_555
metalc
2.527
B
CA
2
E
CA
CA
1_555
B
GLU
80
B
OE1
GLU
66
1_555
metalc
1.948
B
TYR
185
B
O
TYR
173
1_555
B
NA
249
D
NA
NA
1_555
metalc
3.194
A
B
ASP
185
B
O
ASP
174
1_555
B
NA
249
D
NA
NA
1_555
metalc
2.897
B
ARG
222
B
O
ARG
211
1_555
B
NA
249
D
NA
NA
1_555
metalc
2.417
B
LYS
224
B
O
LYS
214
1_555
B
NA
249
D
NA
NA
1_555
HYDROLASE/HYDROLASE INHIBITOR
serine protease, epidermal growth factor-like domain, blood coagulation factor, cleavage on pair of basic residues, EGF-like domain, gamma-carboxyglutamic acid, glycoprotein, hydroxylation, zymogen, HYDROLASE, BLOOD CLOTTING, HYDROLASE-HYDROLASE INHIBITOR complex
FA10_HUMAN
UNP
1
85
P00742
KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC
IPTGPYPCGKQTLE
FA10_HUMAN
UNP
2
235
P00742
IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRF
TKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS
SFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMKTRGLP
85
178
3SW2
85
178
P00742
A
1
1
94
235
472
3SW2
16
248
P00742
B
2
1
238
2
2
7
7
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
PHE
139
A
PHE
55
A
GLU
143
A
GLU
59
A
SER
146
A
SER
62
A
SER
150
A
SER
66
A
TYR
155
A
TYR
71
A
LEU
157
A
LEU
73
A
CYS
164
A
CYS
80
A
PRO
166
A
PRO
82
B
GLN
20
B
GLN
5
B
GLU
21
B
GLU
6
B
LYS
156
B
LYS
144
B
PRO
161
B
PRO
149
B
THR
135
B
THR
124
B
GLY
140
B
GLY
129
B
PRO
198
B
PRO
188
B
PHE
203
B
PHE
193
B
THR
206
B
THR
196
B
GLY
216
B
GLY
206
B
GLY
226
B
GLY
216
B
LYS
230
B
LYS
220
B
MET
180
B
MET
168
B
ALA
183
B
ALA
171
B
GLN
30
B
GLN
15
B
ILE
34
B
ILE
19
B
GLY
40
B
GLY
25
B
ILE
46
B
ILE
31
B
TYR
51
B
TYR
36
B
THR
54
B
THR
39
B
ALA
104
B
ALA
90
B
LEU
108
B
LEU
94
B
ALA
81
B
ALA
67
B
LYS
90
B
LYS
76
B
LYS
65
B
LYS
51
B
VAL
68
B
VAL
54
B
GLN
30
B
GLN
15
B
ILE
34
B
ILE
19
BINDING SITE FOR RESIDUE FI1 B 1
B
FI1
1
Software
14
BINDING SITE FOR RESIDUE NA B 249
B
NA
249
Software
4
BINDING SITE FOR RESIDUE CA B 2
B
CA
2
Software
5
BINDING SITE FOR RESIDUE GOL B 8
B
GOL
8
Software
3
B
GLU
97
B
GLU
83
14
1_555
B
TYR
99
B
TYR
85
14
1_555
B
PHE
174
B
PHE
162
14
1_555
B
ALA
190
B
ALA
180
14
1_555
B
GLN
192
B
GLN
182
14
1_555
B
SER
195
B
SER
185
14
1_555
B
VAL
213
B
VAL
203
14
1_555
B
TRP
215
B
TRP
205
14
1_555
B
GLY
216
B
GLY
206
14
1_555
B
GLY
218
B
GLY
208
14
1_555
B
GLY
226
B
GLY
216
14
1_555
B
ILE
227
B
ILE
217
14
1_555
B
TYR
228
B
TYR
218
14
1_555
B
HOH
259
H
HOH
14
1_555
B
TYR
185
B
TYR
173
4
1_555
B
ASP
185
B
ASP
174
A
4
1_555
B
ARG
222
B
ARG
211
4
1_555
B
LYS
224
B
LYS
214
4
1_555
B
ASP
70
B
ASP
56
5
1_555
B
ASN
72
B
ASN
58
5
1_555
B
GLN
75
B
GLN
61
5
1_555
B
GLU
77
B
GLU
63
5
1_555
B
GLU
80
B
GLU
66
5
1_555
B
LEU
123
B
LEU
109
3
1_555
B
PRO
124
B
PRO
110
3
1_555
B
LEU
235
B
LEU
225
3
1_555
19
P 21 21 21