0.010007
0.000000
0.000000
0.000000
0.006257
0.000000
0.000000
0.000000
0.012186
0.00000
0.00000
0.00000
van den Berg, B.
Eren, E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
99.930
159.828
82.064
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C16 H34 O5
306.438
(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
C
N
75
N
C
N
76
N
C
N
77
N
C
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
C
N
82
N
O
N
83
N
C
N
84
N
C
N
85
N
O
N
86
N
C
N
87
N
C
N
88
N
O
N
89
N
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
O
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
N
N
130
S
C
N
131
N
C
N
132
N
O
N
133
N
C
N
134
N
C
N
135
N
C
N
136
N
O
N
137
N
N
N
138
N
O
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
N
N
150
S
C
N
151
N
C
N
152
N
O
N
153
N
C
N
154
N
C
N
155
N
C
N
156
N
O
N
157
N
O
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
N
N
169
N
C
N
170
N
C
N
171
N
O
N
172
N
O
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
N
N
179
S
C
N
180
N
C
N
181
N
O
N
182
N
C
Y
183
N
C
Y
184
N
N
Y
185
N
C
Y
186
N
C
Y
187
N
N
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
O
N
200
N
H
N
201
N
H
N
202
N
N
N
203
S
C
N
204
N
C
N
205
N
O
N
206
S
C
N
207
N
C
N
208
N
C
N
209
N
C
N
210
N
O
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
N
N
225
S
C
N
226
N
C
N
227
N
O
N
228
N
C
N
229
N
C
N
230
N
C
N
231
N
C
N
232
N
O
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
N
N
247
S
C
N
248
N
C
N
249
N
O
N
250
N
C
N
251
N
C
N
252
N
C
N
253
N
C
N
254
N
N
N
255
N
O
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
N
N
272
S
C
N
273
N
C
N
274
N
O
N
275
N
C
N
276
N
C
N
277
N
S
N
278
N
C
N
279
N
O
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
N
N
292
S
C
N
293
N
C
N
294
N
O
N
295
N
C
Y
296
N
C
Y
297
N
C
Y
298
N
C
Y
299
N
C
Y
300
N
C
Y
301
N
C
N
302
N
O
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
N
N
315
S
C
N
316
N
C
N
317
N
O
N
318
N
C
N
319
N
C
N
320
N
C
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
N
N
332
S
C
N
333
N
C
N
334
N
O
N
335
N
C
N
336
N
O
N
337
N
O
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
S
N
346
N
O
N
347
N
O
N
348
N
O
N
349
N
O
N
350
N
N
N
351
S
C
N
352
N
C
N
353
N
O
N
354
R
C
N
355
N
O
N
356
N
C
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
N
N
368
S
C
N
369
N
C
N
370
N
O
N
371
N
C
Y
372
N
C
Y
373
N
C
Y
374
N
C
Y
375
N
N
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
N
N
395
S
C
N
396
N
C
N
397
N
O
N
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
N
405
N
O
N
406
N
O
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
N
N
419
S
C
N
420
N
C
N
421
N
O
N
422
N
C
N
423
N
C
N
424
N
C
N
425
N
O
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
doub
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
doub
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
Y
181
N
sing
Y
182
N
doub
Y
183
N
doub
N
184
N
sing
Y
185
N
sing
N
186
N
sing
Y
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
doub
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
Y
289
N
doub
Y
290
N
sing
Y
291
N
sing
N
292
N
sing
Y
293
N
doub
N
294
N
sing
Y
295
N
doub
N
296
N
sing
Y
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
doub
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
doub
N
332
N
doub
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
doub
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
doub
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
Y
362
N
doub
Y
363
N
sing
Y
364
N
sing
N
365
N
sing
Y
366
N
doub
Y
367
N
sing
Y
368
N
sing
N
369
N
sing
Y
370
N
sing
Y
371
N
doub
N
372
N
sing
Y
373
N
doub
N
374
N
sing
Y
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
doub
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
Y
390
N
doub
Y
391
N
sing
Y
392
N
sing
N
393
N
sing
Y
394
N
doub
N
395
N
sing
Y
396
N
doub
N
397
N
sing
Y
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
doub
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
US
Plos Biol.
1544-9173
10
e1001242
e1001242
10.1371/journal.pbio.1001242
22272184
Substrate Specificity within a Family of Outer Membrane Carboxylate Channels.
2012
10.2210/pdb3syb/pdb
pdb_00003syb
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2011-02-17
ADSC QUANTUM 270
Si(111)
SINGLE WAVELENGTH
M
x-ray
1
0.972
1.0
X6A
NSLS
0.972
SYNCHROTRON
NSLS BEAMLINE X6A
51457.297
Glycine-glutamate dipeptide porin OpdP
unp residues 26-484
1
man
polymer
96.063
SULFATE ION
2
syn
non-polymer
306.438
(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
3
syn
non-polymer
18.015
water
45
nat
water
no
no
ADEQENPPAPDNPSYAAEVQSIPSVAKPIKGQAGATGLVEGQSLTLTTRNFYSRENMKDSFTFRIPKAGGGSQRIHQRNA
WVQGTVLKYSSGYTQGTVGFGFDVAAFNEIALERGKGRIGGGGNRTLANSDGEALGEWSKLGVANIRLRASNTEFKAGRF
LVNTPVFSYIDNRALPSSFTGFAVTSEELDNLSLQAGSFRKVSPRTGSGDEDMTTEYGTRQVKGDRLNYLGGNYKPLDGL
EISLYGSHFQDVWNQYYLGVTHDIGDLENGIALRTAFNGYHTGDTGAREAGYIDNDTWSLAFTLGHRAHALTLAYQQVDG
NEYFDYVHETSAIFLANSMLADYNSPNEKSAQIRYETDWSYYGVPGLSTGVWYVKGWDIDGTHYDGDRNGAYGNYAEVRA
QDGEKHHELGLMAAYKVQNGPIKDSTFKLTYMMHKASQNQIDGSVNELRLVSTFPFNLLGGHHHHHH
ADEQENPPAPDNPSYAAEVQSIPSVAKPIKGQAGATGLVEGQSLTLTTRNFYSRENMKDSFTFRIPKAGGGSQRIHQRNA
WVQGTVLKYSSGYTQGTVGFGFDVAAFNEIALERGKGRIGGGGNRTLANSDGEALGEWSKLGVANIRLRASNTEFKAGRF
LVNTPVFSYIDNRALPSSFTGFAVTSEELDNLSLQAGSFRKVSPRTGSGDEDMTTEYGTRQVKGDRLNYLGGNYKPLDGL
EISLYGSHFQDVWNQYYLGVTHDIGDLENGIALRTAFNGYHTGDTGAREAGYIDNDTWSLAFTLGHRAHALTLAYQQVDG
NEYFDYVHETSAIFLANSMLADYNSPNEKSAQIRYETDWSYYGVPGLSTGVWYVKGWDIDGTHYDGDRNGAYGNYAEVRA
QDGEKHHELGLMAAYKVQNGPIKDSTFKLTYMMHKASQNQIDGSVNELRLVSTFPFNLLGGHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
opdP, PA4501
287
Pseudomonas aeruginosa
562
Escherichia coli
1
3.18
61.37
VAPOR DIFFUSION, SITTING DROP
4.0
25% PEG 1000
0.2 M ammonium sulphate
50 mM Na-citrate, pH 4.0, VAPOR DIFFUSION, SITTING DROP, temperature 295K
295
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
struct_site
repository
Initial release
Data collection
Database references
Derived calculations
1
0
2012-02-08
1
1
2024-02-28
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2011-07-16
REL
REL
SO4
SULFATE ION
C8E
(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
HOH
water
SO4
1
2
SO4
SO4
468
A
SO4
2
2
SO4
SO4
469
A
C8E
1
3
C8E
C8E
470
A
C8E
2
3
C8E
C8E
471
A
C8E
3
3
C8E
C8E
472
A
HOH
1
4
HOH
HOH
473
A
HOH
2
4
HOH
HOH
474
A
HOH
3
4
HOH
HOH
475
A
HOH
4
4
HOH
HOH
476
A
HOH
5
4
HOH
HOH
477
A
HOH
6
4
HOH
HOH
478
A
HOH
7
4
HOH
HOH
479
A
HOH
8
4
HOH
HOH
480
A
HOH
9
4
HOH
HOH
481
A
HOH
10
4
HOH
HOH
482
A
HOH
11
4
HOH
HOH
483
A
HOH
12
4
HOH
HOH
484
A
HOH
13
4
HOH
HOH
485
A
HOH
14
4
HOH
HOH
486
A
HOH
15
4
HOH
HOH
487
A
HOH
16
4
HOH
HOH
488
A
HOH
17
4
HOH
HOH
489
A
HOH
18
4
HOH
HOH
490
A
HOH
19
4
HOH
HOH
491
A
HOH
20
4
HOH
HOH
492
A
HOH
21
4
HOH
HOH
493
A
HOH
22
4
HOH
HOH
494
A
HOH
23
4
HOH
HOH
495
A
HOH
24
4
HOH
HOH
496
A
HOH
25
4
HOH
HOH
497
A
HOH
26
4
HOH
HOH
498
A
HOH
27
4
HOH
HOH
499
A
HOH
28
4
HOH
HOH
500
A
HOH
29
4
HOH
HOH
501
A
HOH
30
4
HOH
HOH
502
A
HOH
31
4
HOH
HOH
503
A
HOH
32
4
HOH
HOH
504
A
HOH
33
4
HOH
HOH
505
A
HOH
34
4
HOH
HOH
506
A
HOH
35
4
HOH
HOH
507
A
HOH
36
4
HOH
HOH
508
A
HOH
37
4
HOH
HOH
509
A
HOH
38
4
HOH
HOH
510
A
HOH
39
4
HOH
HOH
511
A
HOH
40
4
HOH
HOH
512
A
HOH
41
4
HOH
HOH
513
A
HOH
42
4
HOH
HOH
514
A
HOH
43
4
HOH
HOH
515
A
HOH
44
4
HOH
HOH
516
A
HOH
45
4
HOH
HOH
517
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
PRO
8
n
8
PRO
8
A
ALA
9
n
9
ALA
9
A
PRO
10
n
10
PRO
10
A
ASP
11
n
11
ASP
11
A
ASN
12
n
12
ASN
12
A
PRO
13
n
13
PRO
13
A
SER
14
n
14
SER
14
A
TYR
15
n
15
TYR
15
A
ALA
16
n
16
ALA
16
A
ALA
17
n
17
ALA
17
A
GLU
18
n
18
GLU
18
A
VAL
19
n
19
VAL
19
A
GLN
20
n
20
GLN
20
A
SER
21
n
21
SER
21
A
ILE
22
n
22
ILE
22
A
PRO
23
n
23
PRO
23
A
SER
24
n
24
SER
24
A
VAL
25
n
25
VAL
25
A
ALA
26
n
26
ALA
26
A
LYS
27
n
27
LYS
27
A
PRO
28
n
28
PRO
28
A
ILE
29
n
29
ILE
29
A
LYS
30
n
30
LYS
30
A
GLY
31
n
31
GLY
31
A
GLN
32
n
32
GLN
32
A
ALA
33
n
33
ALA
33
A
GLY
34
n
34
GLY
34
A
ALA
35
n
35
ALA
35
A
THR
36
n
36
THR
36
A
GLY
37
n
37
GLY
37
A
LEU
38
n
38
LEU
38
A
VAL
39
n
39
VAL
39
A
GLU
40
n
40
GLU
40
A
GLY
41
n
41
GLY
41
A
GLN
42
n
42
GLN
42
A
SER
43
n
43
SER
43
A
LEU
44
n
44
LEU
44
A
THR
45
n
45
THR
45
A
LEU
46
n
46
LEU
46
A
THR
47
n
47
THR
47
A
THR
48
n
48
THR
48
A
ARG
49
n
49
ARG
49
A
ASN
50
n
50
ASN
50
A
PHE
51
n
51
PHE
51
A
TYR
52
n
52
TYR
52
A
SER
53
n
53
SER
53
A
ARG
54
n
54
ARG
54
A
GLU
55
n
55
GLU
55
A
ASN
56
n
56
ASN
56
A
n
57
57
A
n
58
58
A
n
59
59
A
n
60
60
A
n
61
61
A
n
62
62
A
n
63
63
A
n
64
64
A
n
65
65
A
n
66
66
A
n
67
67
A
n
68
68
A
n
69
69
A
n
70
70
A
n
71
71
A
n
72
72
A
n
73
73
A
n
74
74
A
n
75
75
A
n
76
76
A
GLN
77
n
77
GLN
77
A
ARG
78
n
78
ARG
78
A
ASN
79
n
79
ASN
79
A
ALA
80
n
80
ALA
80
A
TRP
81
n
81
TRP
81
A
VAL
82
n
82
VAL
82
A
GLN
83
n
83
GLN
83
A
GLY
84
n
84
GLY
84
A
THR
85
n
85
THR
85
A
VAL
86
n
86
VAL
86
A
LEU
87
n
87
LEU
87
A
LYS
88
n
88
LYS
88
A
TYR
89
n
89
TYR
89
A
SER
90
n
90
SER
90
A
SER
91
n
91
SER
91
A
GLY
92
n
92
GLY
92
A
TYR
93
n
93
TYR
93
A
THR
94
n
94
THR
94
A
GLN
95
n
95
GLN
95
A
GLY
96
n
96
GLY
96
A
THR
97
n
97
THR
97
A
VAL
98
n
98
VAL
98
A
GLY
99
n
99
GLY
99
A
PHE
100
n
100
PHE
100
A
GLY
101
n
101
GLY
101
A
PHE
102
n
102
PHE
102
A
ASP
103
n
103
ASP
103
A
VAL
104
n
104
VAL
104
A
ALA
105
n
105
ALA
105
A
ALA
106
n
106
ALA
106
A
PHE
107
n
107
PHE
107
A
ASN
108
n
108
ASN
108
A
GLU
109
n
109
GLU
109
A
ILE
110
n
110
ILE
110
A
ALA
111
n
111
ALA
111
A
LEU
112
n
112
LEU
112
A
n
113
113
A
n
114
114
A
n
115
115
A
n
116
116
A
n
117
117
A
n
118
118
A
n
119
119
A
n
120
120
A
n
121
121
A
n
122
122
A
n
123
123
A
n
124
124
A
n
125
125
A
n
126
126
A
n
127
127
A
n
128
128
A
n
129
129
A
n
130
130
A
n
131
131
A
n
132
132
A
n
133
133
A
n
134
134
A
n
135
135
A
GLY
136
n
136
GLY
136
A
GLU
137
n
137
GLU
137
A
TRP
138
n
138
TRP
138
A
SER
139
n
139
SER
139
A
LYS
140
n
140
LYS
140
A
LEU
141
n
141
LEU
141
A
GLY
142
n
142
GLY
142
A
VAL
143
n
143
VAL
143
A
ALA
144
n
144
ALA
144
A
ASN
145
n
145
ASN
145
A
ILE
146
n
146
ILE
146
A
ARG
147
n
147
ARG
147
A
LEU
148
n
148
LEU
148
A
ARG
149
n
149
ARG
149
A
ALA
150
n
150
ALA
150
A
SER
151
n
151
SER
151
A
ASN
152
n
152
ASN
152
A
THR
153
n
153
THR
153
A
GLU
154
n
154
GLU
154
A
PHE
155
n
155
PHE
155
A
LYS
156
n
156
LYS
156
A
ALA
157
n
157
ALA
157
A
GLY
158
n
158
GLY
158
A
ARG
159
n
159
ARG
159
A
PHE
160
n
160
PHE
160
A
LEU
161
n
161
LEU
161
A
VAL
162
n
162
VAL
162
A
ASN
163
n
163
ASN
163
A
THR
164
n
164
THR
164
A
PRO
165
n
165
PRO
165
A
VAL
166
n
166
VAL
166
A
PHE
167
n
167
PHE
167
A
SER
168
n
168
SER
168
A
TYR
169
n
169
TYR
169
A
ILE
170
n
170
ILE
170
A
ASP
171
n
171
ASP
171
A
ASN
172
n
172
ASN
172
A
ARG
173
n
173
ARG
173
A
ALA
174
n
174
ALA
174
A
LEU
175
n
175
LEU
175
A
PRO
176
n
176
PRO
176
A
SER
177
n
177
SER
177
A
SER
178
n
178
SER
178
A
PHE
179
n
179
PHE
179
A
THR
180
n
180
THR
180
A
GLY
181
n
181
GLY
181
A
PHE
182
n
182
PHE
182
A
ALA
183
n
183
ALA
183
A
VAL
184
n
184
VAL
184
A
THR
185
n
185
THR
185
A
SER
186
n
186
SER
186
A
GLU
187
n
187
GLU
187
A
GLU
188
n
188
GLU
188
A
LEU
189
n
189
LEU
189
A
ASP
190
n
190
ASP
190
A
ASN
191
n
191
ASN
191
A
LEU
192
n
192
LEU
192
A
SER
193
n
193
SER
193
A
LEU
194
n
194
LEU
194
A
GLN
195
n
195
GLN
195
A
ALA
196
n
196
ALA
196
A
GLY
197
n
197
GLY
197
A
SER
198
n
198
SER
198
A
PHE
199
n
199
PHE
199
A
ARG
200
n
200
ARG
200
A
LYS
201
n
201
LYS
201
A
VAL
202
n
202
VAL
202
A
SER
203
n
203
SER
203
A
PRO
204
n
204
PRO
204
A
ARG
205
n
205
ARG
205
A
THR
206
n
206
THR
206
A
GLY
207
n
207
GLY
207
A
SER
208
n
208
SER
208
A
GLY
209
n
209
GLY
209
A
ASP
210
n
210
ASP
210
A
GLU
211
n
211
GLU
211
A
ASP
212
n
212
ASP
212
A
MET
213
n
213
MET
213
A
THR
214
n
214
THR
214
A
THR
215
n
215
THR
215
A
GLU
216
n
216
GLU
216
A
TYR
217
n
217
TYR
217
A
GLY
218
n
218
GLY
218
A
THR
219
n
219
THR
219
A
ARG
220
n
220
ARG
220
A
GLN
221
n
221
GLN
221
A
VAL
222
n
222
VAL
222
A
LYS
223
n
223
LYS
223
A
GLY
224
n
224
GLY
224
A
ASP
225
n
225
ASP
225
A
ARG
226
n
226
ARG
226
A
LEU
227
n
227
LEU
227
A
ASN
228
n
228
ASN
228
A
TYR
229
n
229
TYR
229
A
LEU
230
n
230
LEU
230
A
GLY
231
n
231
GLY
231
A
GLY
232
n
232
GLY
232
A
ASN
233
n
233
ASN
233
A
TYR
234
n
234
TYR
234
A
LYS
235
n
235
LYS
235
A
PRO
236
n
236
PRO
236
A
LEU
237
n
237
LEU
237
A
ASP
238
n
238
ASP
238
A
GLY
239
n
239
GLY
239
A
LEU
240
n
240
LEU
240
A
GLU
241
n
241
GLU
241
A
ILE
242
n
242
ILE
242
A
SER
243
n
243
SER
243
A
LEU
244
n
244
LEU
244
A
TYR
245
n
245
TYR
245
A
GLY
246
n
246
GLY
246
A
SER
247
n
247
SER
247
A
HIS
248
n
248
HIS
248
A
PHE
249
n
249
PHE
249
A
GLN
250
n
250
GLN
250
A
ASP
251
n
251
ASP
251
A
VAL
252
n
252
VAL
252
A
TRP
253
n
253
TRP
253
A
ASN
254
n
254
ASN
254
A
GLN
255
n
255
GLN
255
A
TYR
256
n
256
TYR
256
A
TYR
257
n
257
TYR
257
A
LEU
258
n
258
LEU
258
A
GLY
259
n
259
GLY
259
A
VAL
260
n
260
VAL
260
A
THR
261
n
261
THR
261
A
HIS
262
n
262
HIS
262
A
ASP
263
n
263
ASP
263
A
ILE
264
n
264
ILE
264
A
GLY
265
n
265
GLY
265
A
n
266
266
A
LEU
267
n
267
LEU
267
A
GLU
268
n
268
GLU
268
A
ASN
269
n
269
ASN
269
A
GLY
270
n
270
GLY
270
A
ILE
271
n
271
ILE
271
A
ALA
272
n
272
ALA
272
A
LEU
273
n
273
LEU
273
A
ARG
274
n
274
ARG
274
A
THR
275
n
275
THR
275
A
ALA
276
n
276
ALA
276
A
PHE
277
n
277
PHE
277
A
ASN
278
n
278
ASN
278
A
GLY
279
n
279
GLY
279
A
TYR
280
n
280
TYR
280
A
HIS
281
n
281
HIS
281
A
THR
282
n
282
THR
282
A
GLY
283
n
283
GLY
283
A
ASP
284
n
284
ASP
284
A
THR
285
n
285
THR
285
A
GLY
286
n
286
GLY
286
A
ALA
287
n
287
ALA
287
A
ARG
288
n
288
ARG
288
A
GLU
289
n
289
GLU
289
A
ALA
290
n
290
ALA
290
A
GLY
291
n
291
GLY
291
A
TYR
292
n
292
TYR
292
A
ILE
293
n
293
ILE
293
A
ASP
294
n
294
ASP
294
A
ASN
295
n
295
ASN
295
A
ASP
296
n
296
ASP
296
A
THR
297
n
297
THR
297
A
TRP
298
n
298
TRP
298
A
SER
299
n
299
SER
299
A
LEU
300
n
300
LEU
300
A
ALA
301
n
301
ALA
301
A
PHE
302
n
302
PHE
302
A
THR
303
n
303
THR
303
A
LEU
304
n
304
LEU
304
A
GLY
305
n
305
GLY
305
A
HIS
306
n
306
HIS
306
A
ARG
307
n
307
ARG
307
A
ALA
308
n
308
ALA
308
A
HIS
309
n
309
HIS
309
A
ALA
310
n
310
ALA
310
A
LEU
311
n
311
LEU
311
A
THR
312
n
312
THR
312
A
LEU
313
n
313
LEU
313
A
ALA
314
n
314
ALA
314
A
TYR
315
n
315
TYR
315
A
GLN
316
n
316
GLN
316
A
GLN
317
n
317
GLN
317
A
VAL
318
n
318
VAL
318
A
ASP
319
n
319
ASP
319
A
GLY
320
n
320
GLY
320
A
ASN
321
n
321
ASN
321
A
GLU
322
n
322
GLU
322
A
TYR
323
n
323
TYR
323
A
PHE
324
n
324
PHE
324
A
ASP
325
n
325
ASP
325
A
TYR
326
n
326
TYR
326
A
VAL
327
n
327
VAL
327
A
HIS
328
n
328
HIS
328
A
GLU
329
n
329
GLU
329
A
THR
330
n
330
THR
330
A
SER
331
n
331
SER
331
A
ALA
332
n
332
ALA
332
A
ILE
333
n
333
ILE
333
A
PHE
334
n
334
PHE
334
A
LEU
335
n
335
LEU
335
A
ALA
336
n
336
ALA
336
A
ASN
337
n
337
ASN
337
A
SER
338
n
338
SER
338
A
MET
339
n
339
MET
339
A
LEU
340
n
340
LEU
340
A
ALA
341
n
341
ALA
341
A
ASP
342
n
342
ASP
342
A
TYR
343
n
343
TYR
343
A
ASN
344
n
344
ASN
344
A
SER
345
n
345
SER
345
A
PRO
346
n
346
PRO
346
A
ASN
347
n
347
ASN
347
A
GLU
348
n
348
GLU
348
A
LYS
349
n
349
LYS
349
A
SER
350
n
350
SER
350
A
ALA
351
n
351
ALA
351
A
GLN
352
n
352
GLN
352
A
ILE
353
n
353
ILE
353
A
ARG
354
n
354
ARG
354
A
TYR
355
n
355
TYR
355
A
GLU
356
n
356
GLU
356
A
THR
357
n
357
THR
357
A
ASP
358
n
358
ASP
358
A
TRP
359
n
359
TRP
359
A
SER
360
n
360
SER
360
A
TYR
361
n
361
TYR
361
A
TYR
362
n
362
TYR
362
A
GLY
363
n
363
GLY
363
A
VAL
364
n
364
VAL
364
A
PRO
365
n
365
PRO
365
A
GLY
366
n
366
GLY
366
A
LEU
367
n
367
LEU
367
A
SER
368
n
368
SER
368
A
THR
369
n
369
THR
369
A
GLY
370
n
370
GLY
370
A
VAL
371
n
371
VAL
371
A
TRP
372
n
372
TRP
372
A
TYR
373
n
373
TYR
373
A
VAL
374
n
374
VAL
374
A
LYS
375
n
375
LYS
375
A
GLY
376
n
376
GLY
376
A
TRP
377
n
377
TRP
377
A
ASP
378
n
378
ASP
378
A
ILE
379
n
379
ILE
379
A
ASP
380
n
380
ASP
380
A
GLY
381
n
381
GLY
381
A
THR
382
n
382
THR
382
A
HIS
383
n
383
HIS
383
A
TYR
384
n
384
TYR
384
A
ASP
385
n
385
ASP
385
A
GLY
386
n
386
GLY
386
A
ASP
387
n
387
ASP
387
A
ARG
388
n
388
ARG
388
A
ASN
389
n
389
ASN
389
A
GLY
390
n
390
GLY
390
A
ALA
391
n
391
ALA
391
A
TYR
392
n
392
TYR
392
A
GLY
393
n
393
GLY
393
A
ASN
394
n
394
ASN
394
A
TYR
395
n
395
TYR
395
A
ALA
396
n
396
ALA
396
A
GLU
397
n
397
GLU
397
A
VAL
398
n
398
VAL
398
A
ARG
399
n
399
ARG
399
A
ALA
400
n
400
ALA
400
A
GLN
401
n
401
GLN
401
A
ASP
402
n
402
ASP
402
A
GLY
403
n
403
GLY
403
A
GLU
404
n
404
GLU
404
A
LYS
405
n
405
LYS
405
A
HIS
406
n
406
HIS
406
A
HIS
407
n
407
HIS
407
A
GLU
408
n
408
GLU
408
A
LEU
409
n
409
LEU
409
A
GLY
410
n
410
GLY
410
A
LEU
411
n
411
LEU
411
A
MET
412
n
412
MET
412
A
ALA
413
n
413
ALA
413
A
ALA
414
n
414
ALA
414
A
TYR
415
n
415
TYR
415
A
LYS
416
n
416
LYS
416
A
VAL
417
n
417
VAL
417
A
GLN
418
n
418
GLN
418
A
ASN
419
n
419
ASN
419
A
GLY
420
n
420
GLY
420
A
PRO
421
n
421
PRO
421
A
ILE
422
n
422
ILE
422
A
LYS
423
n
423
LYS
423
A
ASP
424
n
424
ASP
424
A
SER
425
n
425
SER
425
A
THR
426
n
426
THR
426
A
PHE
427
n
427
PHE
427
A
LYS
428
n
428
LYS
428
A
LEU
429
n
429
LEU
429
A
THR
430
n
430
THR
430
A
TYR
431
n
431
TYR
431
A
MET
432
n
432
MET
432
A
MET
433
n
433
MET
433
A
HIS
434
n
434
HIS
434
A
LYS
435
n
435
LYS
435
A
ALA
436
n
436
ALA
436
A
SER
437
n
437
SER
437
A
GLN
438
n
438
GLN
438
A
ASN
439
n
439
ASN
439
A
GLN
440
n
440
GLN
440
A
ILE
441
n
441
ILE
441
A
ASP
442
n
442
ASP
442
A
GLY
443
n
443
GLY
443
A
SER
444
n
444
SER
444
A
VAL
445
n
445
VAL
445
A
ASN
446
n
446
ASN
446
A
GLU
447
n
447
GLU
447
A
LEU
448
n
448
LEU
448
A
ARG
449
n
449
ARG
449
A
LEU
450
n
450
LEU
450
A
VAL
451
n
451
VAL
451
A
SER
452
n
452
SER
452
A
THR
453
n
453
THR
453
A
PHE
454
n
454
PHE
454
A
PRO
455
n
455
PRO
455
A
PHE
456
n
456
PHE
456
A
ASN
457
n
457
ASN
457
A
LEU
458
n
458
LEU
458
A
LEU
459
n
459
LEU
459
A
n
460
460
A
n
461
461
A
n
462
462
A
n
463
463
A
n
464
464
A
n
465
465
A
n
466
466
A
n
467
467
A
author_defined_assembly
1
monomeric
software_defined_assembly
PISA
2
dimeric
3750
-53
35640
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_555
x,-y,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
N
PHE
51
A
N
PHE
51
A
O
VAL
82
A
O
VAL
82
A
N
TYR
89
A
N
TYR
89
A
O
VAL
104
A
O
VAL
104
A
N
PHE
107
A
N
PHE
107
A
O
LYS
140
A
O
LYS
140
A
N
ALA
144
A
N
ALA
144
A
O
ARG
159
A
O
ARG
159
A
N
LYS
156
A
N
LYS
156
A
O
ALA
183
A
O
ALA
183
A
N
SER
186
A
N
SER
186
A
O
LEU
194
A
O
LEU
194
A
N
GLN
195
A
N
GLN
195
A
O
GLY
231
A
O
GLY
231
A
N
LEU
230
A
N
LEU
230
A
O
GLY
246
A
O
GLY
246
A
N
SER
243
A
N
SER
243
A
O
GLY
259
A
O
GLY
259
A
N
ILE
264
A
N
ILE
264
A
O
LEU
273
A
O
LEU
273
A
N
THR
282
A
N
THR
282
A
O
ASN
295
A
O
ASN
295
A
N
LEU
300
A
N
LEU
300
A
O
TYR
315
A
O
TYR
315
A
N
THR
312
A
N
THR
312
A
O
ARG
354
A
O
ARG
354
A
N
TYR
355
A
N
TYR
355
A
O
VAL
371
A
O
VAL
371
A
N
GLY
376
A
N
GLY
376
A
O
HIS
406
A
O
HIS
406
A
N
ALA
413
A
N
ALA
413
A
O
LEU
429
A
O
LEU
429
A
N
MET
432
A
N
MET
432
A
O
GLU
447
A
O
GLU
447
A
O
LEU
450
A
O
LEU
450
A
N
TYR
52
A
N
TYR
52
A
N
THR
164
A
N
THR
164
A
O
PHE
167
A
O
PHE
167
1
A
HOH
489
G
HOH
1
A
CE
LYS
27
A
CE
LYS
27
1
Y
1
A
NZ
LYS
27
A
NZ
LYS
27
1
Y
1
A
CE
LYS
30
A
CE
LYS
30
1
Y
1
A
NZ
LYS
30
A
NZ
LYS
30
1
Y
1
A
CG
GLN
77
A
CG
GLN
77
1
Y
1
A
CD
GLN
77
A
CD
GLN
77
1
Y
1
A
OE1
GLN
77
A
OE1
GLN
77
1
Y
1
A
NE2
GLN
77
A
NE2
GLN
77
1
Y
1
A
CG
ARG
78
A
CG
ARG
78
1
Y
1
A
CD
ARG
78
A
CD
ARG
78
1
Y
1
A
NE
ARG
78
A
NE
ARG
78
1
Y
1
A
CZ
ARG
78
A
CZ
ARG
78
1
Y
1
A
NH1
ARG
78
A
NH1
ARG
78
1
Y
1
A
NH2
ARG
78
A
NH2
ARG
78
1
Y
1
A
CG
LEU
112
A
CG
LEU
112
1
Y
1
A
CD1
LEU
112
A
CD1
LEU
112
1
Y
1
A
CD2
LEU
112
A
CD2
LEU
112
1
Y
1
A
NE
ARG
200
A
NE
ARG
200
1
Y
1
A
CZ
ARG
200
A
CZ
ARG
200
1
Y
1
A
NH1
ARG
200
A
NH1
ARG
200
1
Y
1
A
NH2
ARG
200
A
NH2
ARG
200
1
Y
1
A
CD
LYS
223
A
CD
LYS
223
1
Y
1
A
CE
LYS
223
A
CE
LYS
223
1
Y
1
A
NZ
LYS
223
A
NZ
LYS
223
1
Y
1
A
CZ
ARG
226
A
CZ
ARG
226
1
Y
1
A
NH1
ARG
226
A
NH1
ARG
226
1
Y
1
A
NH2
ARG
226
A
NH2
ARG
226
1
Y
1
A
CD
LYS
235
A
CD
LYS
235
1
Y
1
A
CE
LYS
235
A
CE
LYS
235
1
Y
1
A
NZ
LYS
235
A
NZ
LYS
235
1
Y
1
A
CE
LYS
375
A
CE
LYS
375
1
Y
1
A
NZ
LYS
375
A
NZ
LYS
375
1
Y
1
A
CE
LYS
435
A
CE
LYS
435
1
Y
1
A
NZ
LYS
435
A
NZ
LYS
435
1
Y
1
A
C8
C8E
470
D
C8
C8E
1
1
N
1
A
O9
C8E
470
D
O9
C8E
1
1
N
1
A
C10
C8E
470
D
C10
C8E
1
1
N
1
A
C11
C8E
470
D
C11
C8E
1
1
N
1
A
O12
C8E
470
D
O12
C8E
1
1
N
1
A
C13
C8E
470
D
C13
C8E
1
1
N
1
A
C14
C8E
470
D
C14
C8E
1
1
N
1
A
O15
C8E
470
D
O15
C8E
1
1
N
1
A
C16
C8E
470
D
C16
C8E
1
1
N
1
A
C17
C8E
470
D
C17
C8E
1
1
N
1
A
O18
C8E
470
D
O18
C8E
1
1
N
1
A
C19
C8E
470
D
C19
C8E
1
1
N
1
A
C20
C8E
470
D
C20
C8E
1
1
N
1
A
O21
C8E
470
D
O21
C8E
1
1
N
1
A
C8
C8E
471
E
C8
C8E
1
1
N
1
A
O9
C8E
471
E
O9
C8E
1
1
N
1
A
C10
C8E
471
E
C10
C8E
1
1
N
1
A
C11
C8E
471
E
C11
C8E
1
1
N
1
A
O12
C8E
471
E
O12
C8E
1
1
N
1
A
C13
C8E
471
E
C13
C8E
1
1
N
1
A
C14
C8E
471
E
C14
C8E
1
1
N
1
A
O15
C8E
471
E
O15
C8E
1
1
N
1
A
C16
C8E
471
E
C16
C8E
1
1
N
1
A
C17
C8E
471
E
C17
C8E
1
1
N
1
A
O18
C8E
471
E
O18
C8E
1
1
N
1
A
C19
C8E
471
E
C19
C8E
1
1
N
1
A
C20
C8E
471
E
C20
C8E
1
1
N
1
A
O21
C8E
471
E
O21
C8E
1
1
N
1
A
C1
C8E
472
F
C1
C8E
1
1
N
1
A
C2
C8E
472
F
C2
C8E
1
1
N
1
A
C3
C8E
472
F
C3
C8E
1
1
N
1
A
C4
C8E
472
F
C4
C8E
1
1
N
1
A
ALA
1
A
ALA
1
1
Y
1
A
ASP
2
A
ASP
2
1
Y
1
A
GLU
3
A
GLU
3
1
Y
1
A
GLN
4
A
GLN
4
1
Y
1
A
GLU
5
A
GLU
5
1
Y
1
A
ASN
6
A
ASN
6
1
Y
1
A
PRO
7
A
PRO
7
1
Y
1
A
MET
57
A
MET
57
1
Y
1
A
LYS
58
A
LYS
58
1
Y
1
A
ASP
59
A
ASP
59
1
Y
1
A
SER
60
A
SER
60
1
Y
1
A
PHE
61
A
PHE
61
1
Y
1
A
THR
62
A
THR
62
1
Y
1
A
PHE
63
A
PHE
63
1
Y
1
A
ARG
64
A
ARG
64
1
Y
1
A
ILE
65
A
ILE
65
1
Y
1
A
PRO
66
A
PRO
66
1
Y
1
A
LYS
67
A
LYS
67
1
Y
1
A
ALA
68
A
ALA
68
1
Y
1
A
GLY
69
A
GLY
69
1
Y
1
A
GLY
70
A
GLY
70
1
Y
1
A
GLY
71
A
GLY
71
1
Y
1
A
SER
72
A
SER
72
1
Y
1
A
GLN
73
A
GLN
73
1
Y
1
A
ARG
74
A
ARG
74
1
Y
1
A
ILE
75
A
ILE
75
1
Y
1
A
HIS
76
A
HIS
76
1
Y
1
A
GLU
113
A
GLU
113
1
Y
1
A
ARG
114
A
ARG
114
1
Y
1
A
GLY
115
A
GLY
115
1
Y
1
A
LYS
116
A
LYS
116
1
Y
1
A
GLY
117
A
GLY
117
1
Y
1
A
ARG
118
A
ARG
118
1
Y
1
A
ILE
119
A
ILE
119
1
Y
1
A
GLY
120
A
GLY
120
1
Y
1
A
GLY
121
A
GLY
121
1
Y
1
A
GLY
122
A
GLY
122
1
Y
1
A
GLY
123
A
GLY
123
1
Y
1
A
ASN
124
A
ASN
124
1
Y
1
A
ARG
125
A
ARG
125
1
Y
1
A
THR
126
A
THR
126
1
Y
1
A
LEU
127
A
LEU
127
1
Y
1
A
ALA
128
A
ALA
128
1
Y
1
A
ASN
129
A
ASN
129
1
Y
1
A
SER
130
A
SER
130
1
Y
1
A
ASP
131
A
ASP
131
1
Y
1
A
GLY
132
A
GLY
132
1
Y
1
A
GLU
133
A
GLU
133
1
Y
1
A
ALA
134
A
ALA
134
1
Y
1
A
LEU
135
A
LEU
135
1
Y
1
A
ASP
266
A
ASP
266
1
Y
1
A
GLY
460
A
GLY
460
1
Y
1
A
GLY
461
A
GLY
461
1
Y
1
A
HIS
462
A
HIS
462
1
Y
1
A
HIS
463
A
HIS
463
1
Y
1
A
HIS
464
A
HIS
464
1
Y
1
A
HIS
465
A
HIS
465
1
Y
1
A
HIS
466
A
HIS
466
1
Y
1
A
HIS
467
A
HIS
467
1
Y
1
A
A
O
O
HOH
HOH
491
497
2.16
1
A
A
O
O
HOH
HOH
481
516
2.01
1_555
8_455
1
A
GLU
137
-160.18
116.08
1
A
ALA
144
-164.14
97.82
1
A
SER
151
50.81
-109.83
1
A
PHE
167
-170.39
111.88
1
A
ARG
173
-119.03
-140.95
1
A
ASP
190
-19.61
-47.12
1
A
VAL
252
-120.60
-63.03
1
A
HIS
306
-160.89
117.67
1
A
ARG
307
50.15
-111.57
1
A
MET
339
-121.38
-108.79
1
A
GLN
438
-26.08
-55.54
-5.3442
0.0000
-0.0000
16.4879
0.0000
-11.1438
0.2671
0.2141
0.2194
2.700
9.993
1802
18004
18004
10.01
99.93
0.76
random
1
1.34
P
27.08
0.49
0.80
ML
FLAT BULK SOLVENT MODEL
43.632
0.368
2.700
9.993
45
3243
41
0
3157
0.008
3270
1.163
4432
16.709
1142
0.075
465
0.004
579
0.3568
0.2715
2.7715
134
1241
100.00
0.3668
0.2553
2.8512
139
1216
100.00
0.3157
0.2487
2.9410
138
1230
100.00
0.2901
0.2183
3.0433
131
1251
100.00
0.2802
0.2115
3.1614
136
1220
100.00
0.3266
0.2231
3.3003
138
1219
100.00
0.2502
0.2295
3.4674
139
1244
100.00
0.2698
0.2161
3.6745
138
1242
100.00
0.2495
0.2174
3.9419
143
1254
100.00
0.2429
0.1939
4.3095
136
1254
100.00
0.2412
0.1784
4.8689
139
1250
100.00
0.2553
0.2117
5.9147
148
1280
100.00
0.2531
0.2217
9.9931
143
1301
100.00
2.66
50
3SYB
18213
0
-3
1
92.9
2.66
2.71
1
96.5
data collection
CBASS
phasing
PHASER
refinement
PHENIX
(phenix.refine: 1.7.1_743)
data reduction
HKL-2000
data scaling
HKL-2000
Crystal structure of Pseudomonas aeruginosa OccD3 (OpdP)
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
4
N
N
A
SER
14
A
SER
14
HELX_P
A
GLN
20
A
GLN
20
1
1
7
A
ILE
22
A
ILE
22
HELX_P
A
LYS
27
A
LYS
27
5
2
6
A
GLY
31
A
GLY
31
HELX_P
A
ALA
35
A
ALA
35
5
3
5
A
SER
360
A
SER
360
HELX_P
A
GLY
363
A
GLY
363
5
4
4
A
ASP
387
A
ASP
387
HELX_P
A
ALA
391
A
ALA
391
5
5
5
A
TYR
395
A
TYR
395
HELX_P
A
ALA
400
A
ALA
400
5
6
6
MEMBRANE PROTEIN
beta-barrel, channel, bacterial outer membrane, membrane protein
Q9HVS0_PSEAE
UNP
1
26
Q9HVS0
ADEQENPPAPDNPSYAAEVQSIPSVAKPIKGQAGATGLVEGQSLTLTTRNFYSRENMKDSFTFRIPKAGGGSQRIHQRNA
WVQGTVLKYSSGYTQGTVGFGFDVAAFNEIALERGKGRIGGGGNRTLANSDGEALGEWSKLGVANIRLRASNTEFKAGRF
LVNTPVFSYIDNRALPSSFTGFAVTSEELDNLSLQAGSFRKVSPRTGSGDEDMTTEYGTRQVKGDRLNYLGGNYKPLDGL
EISLYGSHFQDVWNQYYLGVTHDIGDLENGIALRTAFNGYHTGDTGAREAGYIDNDTWSLAFTLGHRAHALTLAYQQVDG
NEYFDYVHETSAIFLANSMLADYNSPNEKSAQIRYETDWSYYGVPGLSTGVWYVKGWDIDGTHYDGDRNGAYGNYAEVRA
QDGEKHHELGLMAAYKVQNGPIKDSTFKLTYMMHKASQNQIDGSVNELRLVSTFPFNLL
26
484
3SYB
1
459
Q9HVS0
A
1
1
459
1
expression tag
GLY
460
3SYB
A
Q9HVS0
UNP
460
1
expression tag
GLY
461
3SYB
A
Q9HVS0
UNP
461
1
expression tag
HIS
462
3SYB
A
Q9HVS0
UNP
462
1
expression tag
HIS
463
3SYB
A
Q9HVS0
UNP
463
1
expression tag
HIS
464
3SYB
A
Q9HVS0
UNP
464
1
expression tag
HIS
465
3SYB
A
Q9HVS0
UNP
465
1
expression tag
HIS
466
3SYB
A
Q9HVS0
UNP
466
1
expression tag
HIS
467
3SYB
A
Q9HVS0
UNP
467
19
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
SER
43
A
SER
43
A
ASN
56
A
ASN
56
A
ARG
78
A
ARG
78
A
SER
90
A
SER
90
A
VAL
98
A
VAL
98
A
ALA
111
A
ALA
111
A
GLU
137
A
GLU
137
A
ALA
150
A
ALA
150
A
THR
153
A
THR
153
A
PHE
160
A
PHE
160
A
SER
178
A
SER
178
A
LEU
189
A
LEU
189
A
LEU
192
A
LEU
192
A
SER
203
A
SER
203
A
LEU
227
A
LEU
227
A
LEU
237
A
LEU
237
A
LEU
240
A
LEU
240
A
PHE
249
A
PHE
249
A
TRP
253
A
TRP
253
A
ILE
264
A
ILE
264
A
ALA
272
A
ALA
272
A
ASP
284
A
ASP
284
A
ASP
294
A
ASP
294
A
HIS
306
A
HIS
306
A
HIS
309
A
HIS
309
A
ASP
319
A
ASP
319
A
LYS
349
A
LYS
349
A
ASP
358
A
ASP
358
A
LEU
367
A
LEU
367
A
ASP
380
A
ASP
380
A
ASP
402
A
ASP
402
A
LYS
416
A
LYS
416
A
THR
426
A
THR
426
A
ALA
436
A
ALA
436
A
VAL
445
A
VAL
445
A
ASN
457
A
ASN
457
A
SER
43
A
SER
43
A
ASN
56
A
ASN
56
A
ASN
163
A
ASN
163
A
THR
164
A
THR
164
A
PHE
167
A
PHE
167
A
SER
168
A
SER
168
BINDING SITE FOR RESIDUE SO4 A 468
A
SO4
468
Software
4
BINDING SITE FOR RESIDUE SO4 A 469
A
SO4
469
Software
4
BINDING SITE FOR RESIDUE C8E A 470
A
C8E
470
Software
3
BINDING SITE FOR RESIDUE C8E A 471
A
C8E
471
Software
3
BINDING SITE FOR RESIDUE C8E A 472
A
C8E
472
Software
7
A
LEU
38
A
LEU
38
4
1_555
A
THR
94
A
THR
94
4
1_555
A
GLN
95
A
GLN
95
4
1_555
A
THR
97
A
THR
97
4
4_555
A
GLY
34
A
GLY
34
4
1_555
A
ALA
35
A
ALA
35
4
1_555
A
TYR
93
A
TYR
93
4
1_555
A
ARG
149
A
ARG
149
4
1_555
A
SER
247
A
SER
247
3
1_555
A
HIS
248
A
HIS
248
3
1_555
A
ASN
254
A
ASN
254
3
1_555
A
TYR
256
A
TYR
256
3
1_555
A
LEU
258
A
LEU
258
3
1_555
A
GLY
279
A
GLY
279
3
1_555
A
ASN
50
A
ASN
50
7
1_555
A
HIS
262
A
HIS
262
7
6_554
A
ILE
264
A
ILE
264
7
6_554
A
LEU
273
A
LEU
273
7
6_554
A
LEU
450
A
LEU
450
7
1_555
A
SER
452
A
SER
452
7
1_555
A
PHE
454
A
PHE
454
7
1_555
20
C 2 2 21