0.011457
0.006615
0.000000
0.000000
0.013229
0.000000
0.000000
0.000000
0.009855
0.00000
0.00000
0.00000
Joint Center for Structural Genomics (JCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.000
90.000
120.000
87.285
87.285
101.476
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Cell
1097-4172
165
690
703
10.1016/j.cell.2016.03.016
27062925
A Distinct Type of Pilus from the Human Microbiome.
2016
10.2210/pdb3t2l/pdb
pdb_00003t2l
100
1
Vertical focusing mirror; double crystal Si(111) monochromator
CCD
2011-07-06
MARMOSAIC 325 mm CCD
double crystal Si(111)
SINGLE WAVELENGTH
M
x-ray
1
0.97907
1.0
BL14-1
SSRL
0.97907
SYNCHROTRON
SSRL BEAMLINE BL14-1
34372.512
Putative cell adhesion protein
1
man
polymer
35.453
CHLORIDE ION
2
syn
non-polymer
92.094
GLYCEROL
3
syn
non-polymer
18.015
water
150
nat
water
no
yes
GSDDRE(MSE)DDGRWKASALRVPLQVSSAVIKQEVVTRLAPDPVPLTEGAIGIFLSGTEPESGQEDSGYKVIDNRKYVY
SEGHWGPPTANDTIYLVGNDADVCAYYPYKDSYTDKTVIPLQSQDYVETEDIYYALNT(MSE)INGFTPAITFD(MSE)V
HAYSLVELKISRENYF(MSE)PCEISKITLKNSNLIKKGTINIAVDGSIHSSETGNYDLTTVTDASPHTLSVGESYVCRV
L(MSE)IPVPLKIERTDAEGGEFGLSVSLVIDGQQ(MSE)LVEIPYSELGEFRQGEKYVIGLKIKGTEIVPTVKALEWED
EEVNGGNKYPVE
GSDDREMDDGRWKASALRVPLQVSSAVIKQEVVTRLAPDPVPLTEGAIGIFLSGTEPESGQEDSGYKVIDNRKYVYSEGH
WGPPTANDTIYLVGNDADVCAYYPYKDSYTDKTVIPLQSQDYVETEDIYYALNTMINGFTPAITFDMVHAYSLVELKISR
ENYFMPCEISKITLKNSNLIKKGTINIAVDGSIHSSETGNYDLTTVTDASPHTLSVGESYVCRVLMIPVPLKIERTDAEG
GEFGLSVSLVIDGQQMLVEIPYSELGEFRQGEKYVIGLKIKGTEIVPTVKALEWEDEEVNGGNKYPVE
A
393159
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
NCTC 9343
sample
BF1858
272559
Bacteroides fragilis
562
Escherichia Coli
PB1
Plasmid
SpeedET
1
3.25
62.11
VAPOR DIFFUSION, SITTING DROP
10.5
1.2M sodium dihydrogen phosphate, 0.8M di-potassium hydrogen phosphate, 0.2M lithium sulfate, 0.1M CAPS pH 10.5, NANODROP', VAPOR DIFFUSION, SITTING DROP, temperature 277K
277
Joint Center for Structural Genomics
JCSG
PSI:Biology
software
citation_author
citation
citation_author
struct_conn
database_2
struct_ref_seq_dif
struct_site
repository
Initial release
Refinement description
Database references
Database references
Derived calculations
Database references
Derived calculations
1
0
2011-08-10
1
1
2017-11-08
1
2
2018-01-24
1
3
2020-04-22
1
4
2023-02-01
_citation_author.name
_citation.journal_abbrev
_citation.journal_id_CSD
_citation.journal_id_ISSN
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.pdbx_database_id_DOI
_citation.pdbx_database_id_PubMed
_citation.title
_citation.year
_struct_conn.pdbx_leaving_atom_flag
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2011-07-22
REL
REL
CL
CHLORIDE ION
GOL
GLYCEROL
HOH
water
THE CONSTRUCT (RESIDUES 21-327) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE.
CL
328
2
CL
CL
328
A
CL
329
2
CL
CL
329
A
GOL
330
3
GOL
GOL
330
A
GOL
331
3
GOL
GOL
331
A
GOL
332
3
GOL
GOL
332
A
HOH
333
4
HOH
HOH
333
A
HOH
334
4
HOH
HOH
334
A
HOH
335
4
HOH
HOH
335
A
HOH
336
4
HOH
HOH
336
A
HOH
337
4
HOH
HOH
337
A
HOH
338
4
HOH
HOH
338
A
HOH
339
4
HOH
HOH
339
A
HOH
340
4
HOH
HOH
340
A
HOH
341
4
HOH
HOH
341
A
HOH
342
4
HOH
HOH
342
A
HOH
343
4
HOH
HOH
343
A
HOH
344
4
HOH
HOH
344
A
HOH
345
4
HOH
HOH
345
A
HOH
346
4
HOH
HOH
346
A
HOH
347
4
HOH
HOH
347
A
HOH
348
4
HOH
HOH
348
A
HOH
349
4
HOH
HOH
349
A
HOH
350
4
HOH
HOH
350
A
HOH
351
4
HOH
HOH
351
A
HOH
352
4
HOH
HOH
352
A
HOH
353
4
HOH
HOH
353
A
HOH
354
4
HOH
HOH
354
A
HOH
355
4
HOH
HOH
355
A
HOH
356
4
HOH
HOH
356
A
HOH
357
4
HOH
HOH
357
A
HOH
358
4
HOH
HOH
358
A
HOH
359
4
HOH
HOH
359
A
HOH
360
4
HOH
HOH
360
A
HOH
361
4
HOH
HOH
361
A
HOH
362
4
HOH
HOH
362
A
HOH
363
4
HOH
HOH
363
A
HOH
364
4
HOH
HOH
364
A
HOH
365
4
HOH
HOH
365
A
HOH
366
4
HOH
HOH
366
A
HOH
367
4
HOH
HOH
367
A
HOH
368
4
HOH
HOH
368
A
HOH
369
4
HOH
HOH
369
A
HOH
370
4
HOH
HOH
370
A
HOH
371
4
HOH
HOH
371
A
HOH
372
4
HOH
HOH
372
A
HOH
373
4
HOH
HOH
373
A
HOH
374
4
HOH
HOH
374
A
HOH
375
4
HOH
HOH
375
A
HOH
376
4
HOH
HOH
376
A
HOH
377
4
HOH
HOH
377
A
HOH
378
4
HOH
HOH
378
A
HOH
379
4
HOH
HOH
379
A
HOH
380
4
HOH
HOH
380
A
HOH
381
4
HOH
HOH
381
A
HOH
382
4
HOH
HOH
382
A
HOH
383
4
HOH
HOH
383
A
HOH
384
4
HOH
HOH
384
A
HOH
385
4
HOH
HOH
385
A
HOH
386
4
HOH
HOH
386
A
HOH
387
4
HOH
HOH
387
A
HOH
388
4
HOH
HOH
388
A
HOH
389
4
HOH
HOH
389
A
HOH
390
4
HOH
HOH
390
A
HOH
391
4
HOH
HOH
391
A
HOH
392
4
HOH
HOH
392
A
HOH
393
4
HOH
HOH
393
A
HOH
394
4
HOH
HOH
394
A
HOH
395
4
HOH
HOH
395
A
HOH
396
4
HOH
HOH
396
A
HOH
397
4
HOH
HOH
397
A
HOH
398
4
HOH
HOH
398
A
HOH
399
4
HOH
HOH
399
A
HOH
400
4
HOH
HOH
400
A
HOH
401
4
HOH
HOH
401
A
HOH
402
4
HOH
HOH
402
A
HOH
403
4
HOH
HOH
403
A
HOH
404
4
HOH
HOH
404
A
HOH
405
4
HOH
HOH
405
A
HOH
406
4
HOH
HOH
406
A
HOH
407
4
HOH
HOH
407
A
HOH
408
4
HOH
HOH
408
A
HOH
409
4
HOH
HOH
409
A
HOH
410
4
HOH
HOH
410
A
HOH
411
4
HOH
HOH
411
A
HOH
412
4
HOH
HOH
412
A
HOH
413
4
HOH
HOH
413
A
HOH
414
4
HOH
HOH
414
A
HOH
415
4
HOH
HOH
415
A
HOH
416
4
HOH
HOH
416
A
HOH
417
4
HOH
HOH
417
A
HOH
418
4
HOH
HOH
418
A
HOH
419
4
HOH
HOH
419
A
HOH
420
4
HOH
HOH
420
A
HOH
421
4
HOH
HOH
421
A
HOH
422
4
HOH
HOH
422
A
HOH
423
4
HOH
HOH
423
A
HOH
424
4
HOH
HOH
424
A
HOH
425
4
HOH
HOH
425
A
HOH
426
4
HOH
HOH
426
A
HOH
427
4
HOH
HOH
427
A
HOH
428
4
HOH
HOH
428
A
HOH
429
4
HOH
HOH
429
A
HOH
430
4
HOH
HOH
430
A
HOH
431
4
HOH
HOH
431
A
HOH
432
4
HOH
HOH
432
A
HOH
433
4
HOH
HOH
433
A
HOH
434
4
HOH
HOH
434
A
HOH
435
4
HOH
HOH
435
A
HOH
436
4
HOH
HOH
436
A
HOH
437
4
HOH
HOH
437
A
HOH
438
4
HOH
HOH
438
A
HOH
439
4
HOH
HOH
439
A
HOH
440
4
HOH
HOH
440
A
HOH
441
4
HOH
HOH
441
A
HOH
442
4
HOH
HOH
442
A
HOH
443
4
HOH
HOH
443
A
HOH
444
4
HOH
HOH
444
A
HOH
445
4
HOH
HOH
445
A
HOH
446
4
HOH
HOH
446
A
HOH
447
4
HOH
HOH
447
A
HOH
448
4
HOH
HOH
448
A
HOH
449
4
HOH
HOH
449
A
HOH
450
4
HOH
HOH
450
A
HOH
451
4
HOH
HOH
451
A
HOH
452
4
HOH
HOH
452
A
HOH
453
4
HOH
HOH
453
A
HOH
454
4
HOH
HOH
454
A
HOH
455
4
HOH
HOH
455
A
HOH
456
4
HOH
HOH
456
A
HOH
457
4
HOH
HOH
457
A
HOH
458
4
HOH
HOH
458
A
HOH
459
4
HOH
HOH
459
A
HOH
460
4
HOH
HOH
460
A
HOH
461
4
HOH
HOH
461
A
HOH
462
4
HOH
HOH
462
A
HOH
463
4
HOH
HOH
463
A
HOH
464
4
HOH
HOH
464
A
HOH
465
4
HOH
HOH
465
A
HOH
466
4
HOH
HOH
466
A
HOH
467
4
HOH
HOH
467
A
HOH
468
4
HOH
HOH
468
A
HOH
469
4
HOH
HOH
469
A
HOH
470
4
HOH
HOH
470
A
HOH
471
4
HOH
HOH
471
A
HOH
472
4
HOH
HOH
472
A
HOH
473
4
HOH
HOH
473
A
HOH
474
4
HOH
HOH
474
A
HOH
475
4
HOH
HOH
475
A
HOH
476
4
HOH
HOH
476
A
HOH
477
4
HOH
HOH
477
A
HOH
478
4
HOH
HOH
478
A
HOH
479
4
HOH
HOH
479
A
HOH
480
4
HOH
HOH
480
A
HOH
481
4
HOH
HOH
481
A
HOH
482
4
HOH
HOH
482
A
n
1
0
A
n
2
21
A
n
3
22
A
n
4
23
A
n
5
24
A
n
6
25
A
n
7
26
A
n
8
27
A
n
9
28
A
n
10
29
A
n
11
30
A
n
12
31
A
n
13
32
A
n
14
33
A
n
15
34
A
n
16
35
A
LEU
36
n
17
LEU
36
A
ARG
37
n
18
ARG
37
A
VAL
38
n
19
VAL
38
A
PRO
39
n
20
PRO
39
A
LEU
40
n
21
LEU
40
A
GLN
41
n
22
GLN
41
A
VAL
42
n
23
VAL
42
A
SER
43
n
24
SER
43
A
SER
44
n
25
SER
44
A
ALA
45
n
26
ALA
45
A
VAL
46
n
27
VAL
46
A
ILE
47
n
28
ILE
47
A
LYS
48
n
29
LYS
48
A
GLN
49
n
30
GLN
49
A
GLU
50
n
31
GLU
50
A
VAL
51
n
32
VAL
51
A
VAL
52
n
33
VAL
52
A
THR
53
n
34
THR
53
A
ARG
54
n
35
ARG
54
A
LEU
55
n
36
LEU
55
A
ALA
56
n
37
ALA
56
A
PRO
57
n
38
PRO
57
A
ASP
58
n
39
ASP
58
A
PRO
59
n
40
PRO
59
A
VAL
60
n
41
VAL
60
A
PRO
61
n
42
PRO
61
A
LEU
62
n
43
LEU
62
A
THR
63
n
44
THR
63
A
GLU
64
n
45
GLU
64
A
GLY
65
n
46
GLY
65
A
ALA
66
n
47
ALA
66
A
ILE
67
n
48
ILE
67
A
GLY
68
n
49
GLY
68
A
ILE
69
n
50
ILE
69
A
PHE
70
n
51
PHE
70
A
LEU
71
n
52
LEU
71
A
SER
72
n
53
SER
72
A
GLY
73
n
54
GLY
73
A
THR
74
n
55
THR
74
A
GLU
75
n
56
GLU
75
A
PRO
76
n
57
PRO
76
A
n
58
77
A
n
59
78
A
n
60
79
A
n
61
80
A
GLU
81
n
62
GLU
81
A
ASP
82
n
63
ASP
82
A
SER
83
n
64
SER
83
A
GLY
84
n
65
GLY
84
A
TYR
85
n
66
TYR
85
A
LYS
86
n
67
LYS
86
A
VAL
87
n
68
VAL
87
A
ILE
88
n
69
ILE
88
A
ASP
89
n
70
ASP
89
A
ASN
90
n
71
ASN
90
A
ARG
91
n
72
ARG
91
A
LYS
92
n
73
LYS
92
A
TYR
93
n
74
TYR
93
A
VAL
94
n
75
VAL
94
A
TYR
95
n
76
TYR
95
A
SER
96
n
77
SER
96
A
GLU
97
n
78
GLU
97
A
GLY
98
n
79
GLY
98
A
HIS
99
n
80
HIS
99
A
TRP
100
n
81
TRP
100
A
GLY
101
n
82
GLY
101
A
PRO
102
n
83
PRO
102
A
PRO
103
n
84
PRO
103
A
THR
104
n
85
THR
104
A
ALA
105
n
86
ALA
105
A
ASN
106
n
87
ASN
106
A
ASP
107
n
88
ASP
107
A
THR
108
n
89
THR
108
A
ILE
109
n
90
ILE
109
A
TYR
110
n
91
TYR
110
A
LEU
111
n
92
LEU
111
A
VAL
112
n
93
VAL
112
A
GLY
113
n
94
GLY
113
A
ASN
114
n
95
ASN
114
A
ASP
115
n
96
ASP
115
A
ALA
116
n
97
ALA
116
A
ASP
117
n
98
ASP
117
A
VAL
118
n
99
VAL
118
A
CYS
119
n
100
CYS
119
A
ALA
120
n
101
ALA
120
A
TYR
121
n
102
TYR
121
A
TYR
122
n
103
TYR
122
A
PRO
123
n
104
PRO
123
A
TYR
124
n
105
TYR
124
A
LYS
125
n
106
LYS
125
A
ASP
126
n
107
ASP
126
A
SER
127
n
108
SER
127
A
TYR
128
n
109
TYR
128
A
THR
129
n
110
THR
129
A
ASP
130
n
111
ASP
130
A
LYS
131
n
112
LYS
131
A
THR
132
n
113
THR
132
A
VAL
133
n
114
VAL
133
A
ILE
134
n
115
ILE
134
A
PRO
135
n
116
PRO
135
A
LEU
136
n
117
LEU
136
A
GLN
137
n
118
GLN
137
A
SER
138
n
119
SER
138
A
GLN
139
n
120
GLN
139
A
ASP
140
n
121
ASP
140
A
TYR
141
n
122
TYR
141
A
VAL
142
n
123
VAL
142
A
GLU
143
n
124
GLU
143
A
THR
144
n
125
THR
144
A
GLU
145
n
126
GLU
145
A
ASP
146
n
127
ASP
146
A
ILE
147
n
128
ILE
147
A
TYR
148
n
129
TYR
148
A
TYR
149
n
130
TYR
149
A
ALA
150
n
131
ALA
150
A
LEU
151
n
132
LEU
151
A
ASN
152
n
133
ASN
152
A
THR
153
n
134
THR
153
A
MSE
154
n
135
MSE
154
A
ILE
155
n
136
ILE
155
A
ASN
156
n
137
ASN
156
A
GLY
157
n
138
GLY
157
A
PHE
158
n
139
PHE
158
A
THR
159
n
140
THR
159
A
PRO
160
n
141
PRO
160
A
ALA
161
n
142
ALA
161
A
ILE
162
n
143
ILE
162
A
THR
163
n
144
THR
163
A
PHE
164
n
145
PHE
164
A
ASP
165
n
146
ASP
165
A
MSE
166
n
147
MSE
166
A
VAL
167
n
148
VAL
167
A
HIS
168
n
149
HIS
168
A
ALA
169
n
150
ALA
169
A
TYR
170
n
151
TYR
170
A
SER
171
n
152
SER
171
A
LEU
172
n
153
LEU
172
A
VAL
173
n
154
VAL
173
A
GLU
174
n
155
GLU
174
A
LEU
175
n
156
LEU
175
A
LYS
176
n
157
LYS
176
A
ILE
177
n
158
ILE
177
A
SER
178
n
159
SER
178
A
ARG
179
n
160
ARG
179
A
GLU
180
n
161
GLU
180
A
ASN
181
n
162
ASN
181
A
TYR
182
n
163
TYR
182
A
PHE
183
n
164
PHE
183
A
MSE
184
n
165
MSE
184
A
PRO
185
n
166
PRO
185
A
CYS
186
n
167
CYS
186
A
GLU
187
n
168
GLU
187
A
ILE
188
n
169
ILE
188
A
SER
189
n
170
SER
189
A
LYS
190
n
171
LYS
190
A
ILE
191
n
172
ILE
191
A
THR
192
n
173
THR
192
A
LEU
193
n
174
LEU
193
A
LYS
194
n
175
LYS
194
A
ASN
195
n
176
ASN
195
A
SER
196
n
177
SER
196
A
ASN
197
n
178
ASN
197
A
LEU
198
n
179
LEU
198
A
ILE
199
n
180
ILE
199
A
LYS
200
n
181
LYS
200
A
LYS
201
n
182
LYS
201
A
GLY
202
n
183
GLY
202
A
THR
203
n
184
THR
203
A
ILE
204
n
185
ILE
204
A
ASN
205
n
186
ASN
205
A
ILE
206
n
187
ILE
206
A
ALA
207
n
188
ALA
207
A
VAL
208
n
189
VAL
208
A
ASP
209
n
190
ASP
209
A
GLY
210
n
191
GLY
210
A
SER
211
n
192
SER
211
A
ILE
212
n
193
ILE
212
A
HIS
213
n
194
HIS
213
A
SER
214
n
195
SER
214
A
SER
215
n
196
SER
215
A
GLU
216
n
197
GLU
216
A
THR
217
n
198
THR
217
A
GLY
218
n
199
GLY
218
A
ASN
219
n
200
ASN
219
A
TYR
220
n
201
TYR
220
A
ASP
221
n
202
ASP
221
A
LEU
222
n
203
LEU
222
A
THR
223
n
204
THR
223
A
THR
224
n
205
THR
224
A
VAL
225
n
206
VAL
225
A
THR
226
n
207
THR
226
A
ASP
227
n
208
ASP
227
A
ALA
228
n
209
ALA
228
A
SER
229
n
210
SER
229
A
PRO
230
n
211
PRO
230
A
HIS
231
n
212
HIS
231
A
THR
232
n
213
THR
232
A
LEU
233
n
214
LEU
233
A
SER
234
n
215
SER
234
A
VAL
235
n
216
VAL
235
A
GLY
236
n
217
GLY
236
A
GLU
237
n
218
GLU
237
A
SER
238
n
219
SER
238
A
TYR
239
n
220
TYR
239
A
VAL
240
n
221
VAL
240
A
CYS
241
n
222
CYS
241
A
ARG
242
n
223
ARG
242
A
VAL
243
n
224
VAL
243
A
LEU
244
n
225
LEU
244
A
MSE
245
n
226
MSE
245
A
ILE
246
n
227
ILE
246
A
PRO
247
n
228
PRO
247
A
VAL
248
n
229
VAL
248
A
PRO
249
n
230
PRO
249
A
LEU
250
n
231
LEU
250
A
LYS
251
n
232
LYS
251
A
ILE
252
n
233
ILE
252
A
GLU
253
n
234
GLU
253
A
ARG
254
n
235
ARG
254
A
THR
255
n
236
THR
255
A
ASP
256
n
237
ASP
256
A
ALA
257
n
238
ALA
257
A
GLU
258
n
239
GLU
258
A
GLY
259
n
240
GLY
259
A
GLY
260
n
241
GLY
260
A
GLU
261
n
242
GLU
261
A
PHE
262
n
243
PHE
262
A
GLY
263
n
244
GLY
263
A
LEU
264
n
245
LEU
264
A
SER
265
n
246
SER
265
A
VAL
266
n
247
VAL
266
A
SER
267
n
248
SER
267
A
LEU
268
n
249
LEU
268
A
VAL
269
n
250
VAL
269
A
ILE
270
n
251
ILE
270
A
ASP
271
n
252
ASP
271
A
GLY
272
n
253
GLY
272
A
GLN
273
n
254
GLN
273
A
GLN
274
n
255
GLN
274
A
MSE
275
n
256
MSE
275
A
LEU
276
n
257
LEU
276
A
VAL
277
n
258
VAL
277
A
GLU
278
n
259
GLU
278
A
ILE
279
n
260
ILE
279
A
PRO
280
n
261
PRO
280
A
TYR
281
n
262
TYR
281
A
SER
282
n
263
SER
282
A
GLU
283
n
264
GLU
283
A
LEU
284
n
265
LEU
284
A
GLY
285
n
266
GLY
285
A
GLU
286
n
267
GLU
286
A
PHE
287
n
268
PHE
287
A
ARG
288
n
269
ARG
288
A
GLN
289
n
270
GLN
289
A
GLY
290
n
271
GLY
290
A
GLU
291
n
272
GLU
291
A
LYS
292
n
273
LYS
292
A
TYR
293
n
274
TYR
293
A
VAL
294
n
275
VAL
294
A
ILE
295
n
276
ILE
295
A
GLY
296
n
277
GLY
296
A
LEU
297
n
278
LEU
297
A
LYS
298
n
279
LYS
298
A
ILE
299
n
280
ILE
299
A
LYS
300
n
281
LYS
300
A
GLY
301
n
282
GLY
301
A
THR
302
n
283
THR
302
A
GLU
303
n
284
GLU
303
A
ILE
304
n
285
ILE
304
A
VAL
305
n
286
VAL
305
A
PRO
306
n
287
PRO
306
A
THR
307
n
288
THR
307
A
VAL
308
n
289
VAL
308
A
LYS
309
n
290
LYS
309
A
ALA
310
n
291
ALA
310
A
LEU
311
n
292
LEU
311
A
GLU
312
n
293
GLU
312
A
TRP
313
n
294
TRP
313
A
GLU
314
n
295
GLU
314
A
ASP
315
n
296
ASP
315
A
GLU
316
n
297
GLU
316
A
n
298
317
A
n
299
318
A
n
300
319
A
n
301
320
A
n
302
321
A
n
303
322
A
n
304
323
A
n
305
324
A
n
306
325
A
n
307
326
A
n
308
327
A
1.1561
0.3468
-1.6269
0.5952
-0.7913
3.6932
-0.0771
-0.0410
-0.0613
-0.0552
0.0325
0.0864
0.2819
-0.2186
0.0446
-0.1047
-0.0714
0.0274
-0.0669
0.0233
-0.0860
refined
-0.6245
26.1557
3.4238
X-RAY DIFFRACTION
A
36
A
316
X-RAY DIFFRACTION
1
{ A|36 - 316 }
author_and_software_defined_assembly
PISA
2
dimeric
6570
-61
27020
A
MSE
154
SELENOMETHIONINE
A
MSE
135
MET
A
MSE
166
SELENOMETHIONINE
A
MSE
147
MET
A
MSE
184
SELENOMETHIONINE
A
MSE
165
MET
A
MSE
245
SELENOMETHIONINE
A
MSE
226
MET
A
MSE
275
SELENOMETHIONINE
A
MSE
256
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
-0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
6_555
-x,-x+y,-z+2/3
crystal symmetry operation
0.0000000000
0.0000000000
67.6506666667
A
N
VAL
38
A
N
VAL
19
A
O
LEU
111
A
O
LEU
92
A
O
VAL
60
A
O
VAL
41
A
N
ILE
47
A
N
ILE
28
A
N
GLN
41
A
N
GLN
22
A
O
ILE
162
A
O
ILE
143
A
O
VAL
167
A
O
VAL
148
A
N
TYR
149
A
N
TYR
130
A
O
ILE
155
A
O
ILE
136
A
N
ALA
116
A
N
ALA
97
A
O
ASP
117
A
O
ASP
98
A
N
SER
72
A
N
SER
53
A
N
ILE
69
A
N
ILE
50
A
O
ARG
91
A
O
ARG
72
A
N
SER
96
A
N
SER
77
A
O
HIS
99
A
O
HIS
80
A
N
LEU
136
A
N
LEU
117
A
O
GLY
202
A
O
GLY
183
A
N
THR
203
A
N
THR
184
A
O
HIS
213
A
O
HIS
194
A
N
GLN
139
A
N
GLN
120
A
O
LEU
244
A
O
LEU
225
A
O
CYS
241
A
O
CYS
222
A
N
LEU
175
A
N
LEU
156
A
N
GLU
174
A
N
GLU
155
A
O
ILE
295
A
O
ILE
276
A
O
TYR
220
A
O
TYR
201
A
N
LEU
193
A
N
LEU
174
A
N
LYS
194
A
N
LYS
175
A
O
SER
265
A
O
SER
246
A
O
PHE
262
A
O
PHE
243
A
N
ARG
254
A
N
ARG
235
A
O
HIS
231
A
O
HIS
212
A
N
ILE
188
A
N
ILE
169
A
N
LYS
194
A
N
LYS
175
A
O
SER
265
A
O
SER
246
A
N
LEU
264
A
N
LEU
245
A
O
ILE
279
A
O
ILE
260
A
N
VAL
248
A
N
VAL
229
A
O
PHE
287
A
O
PHE
268
1
A
CG
GLU
81
A
CG
GLU
62
1
Y
1
A
CD
GLU
81
A
CD
GLU
62
1
Y
1
A
OE1
GLU
81
A
OE1
GLU
62
1
Y
1
A
OE2
GLU
81
A
OE2
GLU
62
1
Y
1
A
GLY
0
A
GLY
1
1
Y
1
A
SER
21
A
SER
2
1
Y
1
A
ASP
22
A
ASP
3
1
Y
1
A
ASP
23
A
ASP
4
1
Y
1
A
ARG
24
A
ARG
5
1
Y
1
A
GLU
25
A
GLU
6
1
Y
1
A
MSE
26
A
MSE
7
1
Y
1
A
ASP
27
A
ASP
8
1
Y
1
A
ASP
28
A
ASP
9
1
Y
1
A
GLY
29
A
GLY
10
1
Y
1
A
ARG
30
A
ARG
11
1
Y
1
A
TRP
31
A
TRP
12
1
Y
1
A
LYS
32
A
LYS
13
1
Y
1
A
ALA
33
A
ALA
14
1
Y
1
A
SER
34
A
SER
15
1
Y
1
A
ALA
35
A
ALA
16
1
Y
1
A
GLU
77
A
GLU
58
1
Y
1
A
SER
78
A
SER
59
1
Y
1
A
GLY
79
A
GLY
60
1
Y
1
A
GLN
80
A
GLN
61
1
Y
1
A
GLU
317
A
GLU
298
1
Y
1
A
VAL
318
A
VAL
299
1
Y
1
A
ASN
319
A
ASN
300
1
Y
1
A
GLY
320
A
GLY
301
1
Y
1
A
GLY
321
A
GLY
302
1
Y
1
A
ASN
322
A
ASN
303
1
Y
1
A
LYS
323
A
LYS
304
1
Y
1
A
TYR
324
A
TYR
305
1
Y
1
A
PRO
325
A
PRO
306
1
Y
1
A
VAL
326
A
VAL
307
1
Y
1
A
GLU
327
A
GLU
308
1
Y
1
A
PRO
57
-76.15
-167.28
1
A
ASN
195
-179.28
136.22
1
A
SER
229
-114.44
72.13
181.580
57.8296
22.350
-7.0497
0.0000
0.0000
-7.0497
0.0000
14.0994
0.9428
0.9226
1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. GLYCEROL (GOL) AND CHLORIDE MODELED ARE PRESENT IN PROTEIN BUFFER/CRYO BUFFERS. 3. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 4. THE SAD PHASES WERE USED AS RESTRAINTS DURING REFINEMENT.
0.2192
0.1754
0.1775
2.3300
28.571
993
19509
5.0900
1.000
0.500
RANDOM
1
THROUGHOUT
0.000
SAD
2.3300
28.571
150
2326
20
0
2156
1045
SINUSOIDAL
2.000
58
HARMONIC
2.000
325
HARMONIC
5.000
2263
HARMONIC
20.000
0
SEMIHARMONIC
5.000
307
SEMIHARMONIC
5.000
2387
SEMIHARMONIC
4.000
0.010
2263
HARMONIC
2.000
1.080
3085
HARMONIC
2.000
3.920
2.630
0.2409
0.1949
0.1973
2.4600
152
2651
2803
10
5.4200
54.212
2.33
28.571
3T2L
19607
-3.000
0.068
1
22.780
14.52
99.700
0.945
2.330
2.410
2.67
27234
3542
1
99.700
0.766
2.410
2.510
3.2
29526
3835
1
99.700
0.572
2.510
2.620
4.3
27364
3567
1
99.700
0.403
2.620
2.760
6.1
29125
3785
1
99.800
0.254
2.760
2.930
9.1
28253
3678
1
99.800
0.139
2.930
3.160
15.8
28679
3769
1
99.900
0.082
3.160
3.480
24.5
28646
3733
1
99.900
0.046
3.480
3.980
40.3
28545
3695
1
99.900
0.031
3.980
5.000
57.3
28134
3670
1
100.000
0.023
5.000
28.57
63.8
29115
3759
1
99.100
model building
D.C. & J.S. Richardson lab
molprobity@kinemage.biochem.duke.edu
http://kinemage.biochem.duke.edu/molprobity/
MolProbity
package
3beta29
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
phasing
George M. Sheldrick
gsheldr@shelx.uni-ac.gwdg.de
Fortran_77
http://shelx.uni-ac.gwdg.de/SHELX/
SHELX
package
phasing
Eric de La Fortelle
sharp-develop@globalphasing.com
http://www.globalphasing.com/sharp/
SHARP
package
data scaling
Wolfgang Kabsch
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html
XSCALE
package
December 6, 2010
refinement
Gerard Bricogne
buster-develop@GlobalPhasing.com
http://www.globalphasing.com/buster/
BUSTER-TNT
program
2.8.0
data reduction
XDS
phasing
SHELXD
refinement
BUSTER
2.8.0
Crystal structure of a Putative cell adhesion protein (BF1858) from Bacteroides fragilis NCTC 9343 at 2.33 A resolution
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
4
N
N
A
THR
104
A
THR
85
HELX_P
A
THR
108
A
THR
89
5
1
5
A
VAL
142
A
VAL
123
HELX_P
A
ASP
146
A
ASP
127
5
2
5
covale
1.341
both
A
THR
153
A
C
THR
134
1_555
A
MSE
154
A
N
MSE
135
1_555
covale
1.326
both
A
MSE
154
A
C
MSE
135
1_555
A
ILE
155
A
N
ILE
136
1_555
covale
1.341
both
A
ASP
165
A
C
ASP
146
1_555
A
MSE
166
A
N
MSE
147
1_555
covale
1.322
both
A
MSE
166
A
C
MSE
147
1_555
A
VAL
167
A
N
VAL
148
1_555
covale
1.333
both
A
PHE
183
A
C
PHE
164
1_555
A
MSE
184
A
N
MSE
165
1_555
covale
1.360
both
A
MSE
184
A
C
MSE
165
1_555
A
PRO
185
A
N
PRO
166
1_555
covale
1.337
both
A
LEU
244
A
C
LEU
225
1_555
A
MSE
245
A
N
MSE
226
1_555
covale
1.349
both
A
MSE
245
A
C
MSE
226
1_555
A
ILE
246
A
N
ILE
227
1_555
covale
1.335
both
A
GLN
274
A
C
GLN
255
1_555
A
MSE
275
A
N
MSE
256
1_555
covale
1.337
both
A
MSE
275
A
C
MSE
256
1_555
A
LEU
276
A
N
LEU
257
1_555
CELL ADHESION
Prealbumin-like fold, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, CELL ADHESION
A
TYR
122
A
TYR
103
1
A
PRO
123
A
PRO
104
-8.49
Q5LE95_BACFN
UNP
1
21
Q5LE95
SDDREMDDGRWKASALRVPLQVSSAVIKQEVVTRLAPDPVPLTEGAIGIFLSGTEPESGQEDSGYKVIDNRKYVYSEGHW
GPPTANDTIYLVGNDADVCAYYPYKDSYTDKTVIPLQSQDYVETEDIYYALNTMINGFTPAITFDMVHAYSLVELKISRE
NYFMPCEISKITLKNSNLIKKGTINIAVDGSIHSSETGNYDLTTVTDASPHTLSVGESYVCRVLMIPVPLKIERTDAEGG
EFGLSVSLVIDGQQMLVEIPYSELGEFRQGEKYVIGLKIKGTEIVPTVKALEWEDEEVNGGNKYPVE
21
327
3T2L
21
327
Q5LE95
A
1
2
308
1
expression tag
GLY
0
3T2L
A
Q5LE95
UNP
1
2
8
3
4
4
4
2
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
38
A
VAL
19
A
PRO
39
A
PRO
20
A
TYR
110
A
TYR
91
A
LEU
111
A
LEU
92
A
VAL
60
A
VAL
41
A
PRO
61
A
PRO
42
A
GLN
41
A
GLN
22
A
ILE
47
A
ILE
28
A
ALA
161
A
ALA
142
A
HIS
168
A
HIS
149
A
TYR
148
A
TYR
129
A
ILE
155
A
ILE
136
A
ALA
116
A
ALA
97
A
TYR
122
A
TYR
103
A
ALA
66
A
ALA
47
A
GLY
73
A
GLY
54
A
ILE
88
A
ILE
69
A
SER
96
A
SER
77
A
HIS
99
A
HIS
80
A
GLY
101
A
GLY
82
A
ILE
134
A
ILE
115
A
GLN
137
A
GLN
118
A
ILE
199
A
ILE
180
A
ILE
204
A
ILE
185
A
ILE
212
A
ILE
193
A
THR
217
A
THR
198
A
GLN
139
A
GLN
120
A
ASP
140
A
ASP
121
A
TYR
239
A
TYR
220
A
MSE
245
A
MSE
226
A
SER
171
A
SER
152
A
GLU
180
A
GLU
161
A
LYS
292
A
LYS
273
A
LYS
300
A
LYS
281
A
TYR
220
A
TYR
201
A
ASP
221
A
ASP
202
A
GLU
187
A
GLU
168
A
LYS
194
A
LYS
175
A
GLU
261
A
GLU
242
A
ILE
270
A
ILE
251
A
ARG
254
A
ARG
235
A
THR
255
A
THR
236
A
HIS
231
A
HIS
212
A
THR
232
A
THR
213
A
GLU
187
A
GLU
168
A
LYS
194
A
LYS
175
A
GLU
261
A
GLU
242
A
ILE
270
A
ILE
251
A
GLN
273
A
GLN
254
A
PRO
280
A
PRO
261
A
VAL
248
A
VAL
229
A
PRO
249
A
PRO
230
A
GLU
286
A
GLU
267
A
PHE
287
A
PHE
268
BINDING SITE FOR RESIDUE CL A 328
A
CL
328
Software
3
BINDING SITE FOR RESIDUE CL A 329
A
CL
329
Software
1
BINDING SITE FOR RESIDUE GOL A 330
A
GOL
330
Software
5
BINDING SITE FOR RESIDUE GOL A 331
A
GOL
331
Software
4
BINDING SITE FOR RESIDUE GOL A 332
A
GOL
332
Software
9
A
LEU
172
A
LEU
153
3
1_555
A
ARG
242
A
ARG
223
3
1_555
A
GOL
330
D
GOL
3
1_555
A
ARG
37
A
ARG
18
1
1_555
A
GLU
174
A
GLU
155
5
1_555
A
LYS
176
A
LYS
157
5
1_555
A
LYS
292
A
LYS
273
5
1_555
A
ASP
315
A
ASP
296
5
6_555
A
CL
328
B
CL
5
1_555
A
ASN
181
A
ASN
162
4
1_555
A
MSE
275
A
MSE
256
4
6_555
A
LEU
276
A
LEU
257
4
6_555
A
ILE
304
A
ILE
285
4
1_555
A
SER
127
A
SER
108
9
1_555
A
TYR
128
A
TYR
109
9
1_555
A
THR
129
A
THR
110
9
1_555
A
ASP
130
A
ASP
111
9
1_555
A
VAL
133
A
VAL
114
9
1_555
A
ILE
134
A
ILE
115
9
1_555
A
THR
223
A
THR
204
9
4_555
A
SER
229
A
SER
210
9
4_555
A
HOH
480
G
HOH
9
1_555
154
P 32 2 1