0.023105 0.000000 0.000000 0.000000 0.023105 0.000000 0.000000 0.000000 0.011188 0.00000 0.00000 0.00000 Martinez, N. Tarbouriech, N. Jamin, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 43.280 43.280 89.380 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Virol. JOVIAM 0825 0022-538X 87 9569 9578 10.1128/JVI.00999-13 23785215 Structure of the C-terminal domain of lettuce necrotic yellows virus phosphoprotein. 2013 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2011-04-10 ADSC QUANTUM 315r channel cut ESRF monochromator SINGLE WAVELENGTH M x-ray 1 0.974 1.0 ID14-4 ESRF 0.974 SYNCHROTRON ESRF BEAMLINE ID14-4 9555.391 Phosphoprotein C-terminal domain 1 man polymer 24.305 MAGNESIUM ION 1 syn non-polymer 18.015 water 22 nat water Protein P, Protein 4a no yes (MSE)ARIRHEKEKLLADLDWEIGEIAQYTPLIVDFLVPDDILA(MSE)AADGLTPELKEKIQNEIIENHIAL(MSE)AL EEYSSLEHHHHHH MARIRHEKEKLLADLDWEIGEIAQYTPLIVDFLVPDDILAMAADGLTPELKEKIQNEIIENHIALMALEEYSSLEHHHHH H A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n LNYV isolate 318 sample P 928304 Lettuce necrotic yellows virus 511693 Escherichia coli BL21 RIL Plasmid pET-28a 1 2.19 43.84 VAPOR DIFFUSION, HANGING DROP 5.6 50 mM Na Cacodylate, 40 mM Magnesium Acetate, 10% MPD, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 repository Initial release Database references 1 0 2013-01-30 1 1 2014-03-26 RCSB Y RCSB 2011-07-26 REL REL MG MAGNESIUM ION HOH water MG 1 2 MG MG 82 A HOH 1 3 HOH HOH 83 A HOH 2 3 HOH HOH 84 A HOH 4 3 HOH HOH 85 A HOH 6 3 HOH HOH 86 A HOH 8 3 HOH HOH 87 A HOH 9 3 HOH HOH 88 A HOH 10 3 HOH HOH 89 A HOH 12 3 HOH HOH 90 A HOH 15 3 HOH HOH 91 A HOH 17 3 HOH HOH 92 A HOH 18 3 HOH HOH 93 A HOH 23 3 HOH HOH 94 A HOH 24 3 HOH HOH 95 A HOH 25 3 HOH HOH 96 A HOH 26 3 HOH HOH 97 A HOH 27 3 HOH HOH 98 A HOH 28 3 HOH HOH 99 A HOH 31 3 HOH HOH 100 A HOH 43 3 HOH HOH 101 A HOH 45 3 HOH HOH 102 A HOH 46 3 HOH HOH 103 A HOH 48 3 HOH HOH 104 A n 1 1 A n 2 2 A ARG 3 n 3 ARG 3 A ILE 4 n 4 ILE 4 A ARG 5 n 5 ARG 5 A HIS 6 n 6 HIS 6 A GLU 7 n 7 GLU 7 A LYS 8 n 8 LYS 8 A GLU 9 n 9 GLU 9 A LYS 10 n 10 LYS 10 A LEU 11 n 11 LEU 11 A LEU 12 n 12 LEU 12 A ALA 13 n 13 ALA 13 A ASP 14 n 14 ASP 14 A LEU 15 n 15 LEU 15 A ASP 16 n 16 ASP 16 A TRP 17 n 17 TRP 17 A GLU 18 n 18 GLU 18 A ILE 19 n 19 ILE 19 A GLY 20 n 20 GLY 20 A GLU 21 n 21 GLU 21 A ILE 22 n 22 ILE 22 A ALA 23 n 23 ALA 23 A GLN 24 n 24 GLN 24 A TYR 25 n 25 TYR 25 A THR 26 n 26 THR 26 A PRO 27 n 27 PRO 27 A LEU 28 n 28 LEU 28 A ILE 29 n 29 ILE 29 A VAL 30 n 30 VAL 30 A ASP 31 n 31 ASP 31 A PHE 32 n 32 PHE 32 A LEU 33 n 33 LEU 33 A VAL 34 n 34 VAL 34 A PRO 35 n 35 PRO 35 A ASP 36 n 36 ASP 36 A ASP 37 n 37 ASP 37 A ILE 38 n 38 ILE 38 A LEU 39 n 39 LEU 39 A ALA 40 n 40 ALA 40 A MSE 41 n 41 MSE 41 A ALA 42 n 42 ALA 42 A ALA 43 n 43 ALA 43 A ASP 44 n 44 ASP 44 A GLY 45 n 45 GLY 45 A LEU 46 n 46 LEU 46 A ALA 47 n 47 THR 47 A PRO 48 n 48 PRO 48 A GLU 49 n 49 GLU 49 A LEU 50 n 50 LEU 50 A LYS 51 n 51 LYS 51 A GLU 52 n 52 GLU 52 A LYS 53 n 53 LYS 53 A ILE 54 n 54 ILE 54 A GLN 55 n 55 GLN 55 A ASN 56 n 56 ASN 56 A GLU 57 n 57 GLU 57 A ILE 58 n 58 ILE 58 A ILE 59 n 59 ILE 59 A GLU 60 n 60 GLU 60 A ASN 61 n 61 ASN 61 A HIS 62 n 62 HIS 62 A ILE 63 n 63 ILE 63 A ALA 64 n 64 ALA 64 A LEU 65 n 65 LEU 65 A MSE 66 n 66 MSE 66 A ALA 67 n 67 ALA 67 A LEU 68 n 68 LEU 68 A GLU 69 n 69 GLU 69 A GLU 70 n 70 GLU 70 A TYR 71 n 71 TYR 71 A SER 72 n 72 SER 72 A SER 73 n 73 SER 73 A LEU 74 n 74 LEU 74 A n 75 75 A n 76 76 A n 77 77 A n 78 78 A n 79 79 A n 80 80 A n 81 81 A 15.7115 0.8802 -3.6312 2.8366 -0.8949 9.8071 0.0282 0.2866 -0.3206 -0.3195 -0.1878 -0.0773 -0.2079 -0.3979 0.1595 -0.0147 0.0042 -0.0198 0.1857 0.0085 0.0666 refined 5.5760 15.6010 42.2150 X-RAY DIFFRACTION 17.0582 6.5070 -4.8541 5.9722 -2.1677 9.2166 0.5687 -0.9847 1.4648 -0.1393 -0.1893 0.3171 -0.8746 0.2270 -0.3794 0.1194 0.0091 0.0071 0.1936 -0.0419 0.1468 refined 6.8640 24.8580 44.9870 X-RAY DIFFRACTION 11.6935 -0.4301 1.0597 19.9456 -2.3257 11.3174 0.0775 -0.1379 -0.9778 -0.1937 -0.0908 0.1192 0.6498 0.5637 0.0134 0.0762 0.0292 0.0004 0.2910 0.0388 0.1125 refined 13.6280 12.4290 41.7020 X-RAY DIFFRACTION 19.2670 1.6895 6.9287 17.5609 4.6719 18.2056 0.9593 -1.5353 -2.6002 0.5940 -0.4291 0.3115 1.6381 -0.5796 -0.5302 0.1608 -0.0183 -0.0952 0.5350 0.2716 0.3267 refined 11.0470 8.5920 51.4030 X-RAY DIFFRACTION 16.9231 20.5440 9.3590 46.2165 17.5850 11.6582 0.6150 -0.3575 0.9386 -0.3122 -0.9533 -0.7335 -1.6714 -1.1134 0.3383 0.5458 -0.0014 0.0580 0.3236 0.0237 0.1459 refined 22.0520 27.9450 51.7100 X-RAY DIFFRACTION A 3 A 17 X-RAY DIFFRACTION 1 A 18 A 29 X-RAY DIFFRACTION 2 A 30 A 45 X-RAY DIFFRACTION 3 A 46 A 59 X-RAY DIFFRACTION 4 A 60 A 74 X-RAY DIFFRACTION 5 author_defined_assembly 1 monomeric A MSE 41 SELENOMETHIONINE A MSE 41 MET A MSE 66 SELENOMETHIONINE A MSE 66 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A MG 82 B MG 1 A CG ARG 3 A CG ARG 3 0 Y 1 A CD ARG 3 A CD ARG 3 0 Y 1 A NE ARG 3 A NE ARG 3 0 Y 1 A CZ ARG 3 A CZ ARG 3 0 Y 1 A NH1 ARG 3 A NH1 ARG 3 0 Y 1 A NH2 ARG 3 A NH2 ARG 3 0 Y 1 A CG GLN 24 A CG GLN 24 0 Y 1 A CD GLN 24 A CD GLN 24 0 Y 1 A OE1 GLN 24 A OE1 GLN 24 0 Y 1 A NE2 GLN 24 A NE2 GLN 24 0 Y 1 A OG1 THR 47 A OG1 THR 47 1 Y 1 A CG2 THR 47 A CG2 THR 47 1 Y 1 A CB THR 47 A CB THR 47 0 Y 1 A CD GLU 69 A CD GLU 69 0 Y 1 A OE1 GLU 69 A OE1 GLU 69 0 Y 1 A OE2 GLU 69 A OE2 GLU 69 0 Y 1 A C LEU 74 A C LEU 74 0 Y 1 A O LEU 74 A O LEU 74 0 Y 1 A MSE 1 A MSE 1 1 Y 1 A ALA 2 A ALA 2 1 Y 1 A GLU 75 A GLU 75 1 Y 1 A HIS 76 A HIS 76 1 Y 1 A HIS 77 A HIS 77 1 Y 1 A HIS 78 A HIS 78 1 Y 1 A HIS 79 A HIS 79 1 Y 1 A HIS 80 A HIS 80 1 Y 1 A HIS 81 A HIS 81 1 Y 1 -20.51 1.90 110.30 89.79 A A A N CA CB THR THR THR 47 47 47 N 1 A A CB CG ARG ARG 3 3 -0.183 0.027 1.521 1.338 N 1 A A CB CG GLN GLN 24 24 -0.343 0.027 1.521 1.178 N 1 A A CA CB THR THR 47 47 0.211 0.026 1.529 1.740 N 1 A A CG CD GLU GLU 49 49 0.105 0.015 1.515 1.620 N 1 A A CD OE1 GLU GLU 49 49 0.131 0.011 1.252 1.383 N 1 A A CD OE2 GLU GLU 60 60 0.075 0.011 1.252 1.327 N 1 A A CG CD GLU GLU 69 69 -0.109 0.015 1.515 1.406 N 1 A ASP 16 83.41 14.68 1 A THR 47 -144.72 -8.99 1 A PRO 48 20.87 -114.58 54.050 0.11 0.00 0.00 0.11 0.00 -0.22 0.953 0.918 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.29351 0.22614 0.22922 0.22922 2.0 30.60 288 5923 4.6 99.84 14.241 0.172 RANDOM 1 THROUGHOUT SAD 0.189 0.80 0.80 1.40 MAXIMUM LIKELIHOOD MASK 0.189 0.188 2.0 30.60 22 600 1 0 577 0.027 0.022 582 2.064 2.001 793 6.941 5.000 75 44.606 26.923 26 21.884 15.000 106 6.797 15.000 1 0.143 0.200 94 0.015 0.021 430 1.026 1.500 363 1.742 2.000 586 2.984 3.000 219 4.588 4.500 205 0.293 0.290 2.05 16 430 813 20 99.33 43.8 2.0 30.6 3T4R 6220 0.072 1 20.62 10.56 99.8 0.455 2.00 2.05 2.88 813 1 3.7 99.3 data collection DNA phasing SHELXD refinement REFMAC 5.5.0110 data reduction XDS data scaling XSCALE Phosphoprotein Lettuce Necrotic Yellow Virus Phosphoprotein C-Terminal Domain 1 N N 2 N N 3 N N A ARG 3 A ARG 3 HELX_P A LEU 15 A LEU 15 1 1 13 A GLU 18 A GLU 18 HELX_P A ALA 23 A ALA 23 1 2 6 A THR 26 A THR 26 HELX_P A VAL 34 A VAL 34 1 3 9 A PRO 35 A PRO 35 HELX_P A ALA 42 A ALA 42 1 4 8 A GLU 49 A GLU 49 HELX_P A LEU 74 A LEU 74 1 5 26 covale 1.327 A ALA 40 A C ALA 40 1_555 A MSE 41 A N MSE 41 1_555 covale 1.333 A MSE 41 A C MSE 41 1_555 A ALA 42 A N ALA 42 1_555 covale 1.325 A LEU 65 A C LEU 65 1_555 A MSE 66 A N MSE 66 1_555 covale 1.327 A MSE 66 A C MSE 66 1_555 A ALA 67 A N ALA 67 1_555 metalc 2.613 A ASP 36 A OD2 ASP 36 1_555 A MG 82 B MG MG 1_555 VIRAL PROTEIN Helical bundle, Nucleoprotein, VIRAL PROTEIN A LEU 46 A LEU 46 1 A THR 47 A THR 47 6.03 VP4A_LNYV3 UNP 1 230 Q9E7N7 RIRHEKEKLLADLDWEIGEIAQYTPLIVDFLVPDDILAMAADGLTPELKEKIQNEIIENHIALMALEEYSS 230 300 3T4R 3 73 Q9E7N7 A 1 3 73 1 EXPRESSION TAG MSE 1 3T4R A Q9E7N7 UNP 1 1 EXPRESSION TAG ALA 2 3T4R A Q9E7N7 UNP 2 1 EXPRESSION TAG LEU 74 3T4R A Q9E7N7 UNP 74 1 EXPRESSION TAG GLU 75 3T4R A Q9E7N7 UNP 75 1 EXPRESSION TAG HIS 76 3T4R A Q9E7N7 UNP 76 1 EXPRESSION TAG HIS 77 3T4R A Q9E7N7 UNP 77 1 EXPRESSION TAG HIS 78 3T4R A Q9E7N7 UNP 78 1 EXPRESSION TAG HIS 79 3T4R A Q9E7N7 UNP 79 1 EXPRESSION TAG HIS 80 3T4R A Q9E7N7 UNP 80 1 EXPRESSION TAG HIS 81 3T4R A Q9E7N7 UNP 81 BINDING SITE FOR RESIDUE MG A 82 Software 2 A ASP 36 A ASP 36 2 1_555 A ASP 36 A ASP 36 2 7_555 91 P 41 2 2