0.023105
0.000000
0.000000
0.000000
0.023105
0.000000
0.000000
0.000000
0.011188
0.00000
0.00000
0.00000
Martinez, N.
Tarbouriech, N.
Jamin, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
43.280
43.280
89.380
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Virol.
JOVIAM
0825
0022-538X
87
9569
9578
10.1128/JVI.00999-13
23785215
Structure of the C-terminal domain of lettuce necrotic yellows virus phosphoprotein.
2013
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2011-04-10
ADSC QUANTUM 315r
channel cut ESRF monochromator
SINGLE WAVELENGTH
M
x-ray
1
0.974
1.0
ID14-4
ESRF
0.974
SYNCHROTRON
ESRF BEAMLINE ID14-4
9555.391
Phosphoprotein
C-terminal domain
1
man
polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
18.015
water
22
nat
water
Protein P, Protein 4a
no
yes
(MSE)ARIRHEKEKLLADLDWEIGEIAQYTPLIVDFLVPDDILA(MSE)AADGLTPELKEKIQNEIIENHIAL(MSE)AL
EEYSSLEHHHHHH
MARIRHEKEKLLADLDWEIGEIAQYTPLIVDFLVPDDILAMAADGLTPELKEKIQNEIIENHIALMALEEYSSLEHHHHH
H
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
LNYV
isolate 318
sample
P
928304
Lettuce necrotic yellows virus
511693
Escherichia coli
BL21 RIL
Plasmid
pET-28a
1
2.19
43.84
VAPOR DIFFUSION, HANGING DROP
5.6
50 mM Na Cacodylate, 40 mM Magnesium Acetate, 10% MPD, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
repository
Initial release
Database references
1
0
2013-01-30
1
1
2014-03-26
RCSB
Y
RCSB
2011-07-26
REL
REL
MG
MAGNESIUM ION
HOH
water
MG
1
2
MG
MG
82
A
HOH
1
3
HOH
HOH
83
A
HOH
2
3
HOH
HOH
84
A
HOH
4
3
HOH
HOH
85
A
HOH
6
3
HOH
HOH
86
A
HOH
8
3
HOH
HOH
87
A
HOH
9
3
HOH
HOH
88
A
HOH
10
3
HOH
HOH
89
A
HOH
12
3
HOH
HOH
90
A
HOH
15
3
HOH
HOH
91
A
HOH
17
3
HOH
HOH
92
A
HOH
18
3
HOH
HOH
93
A
HOH
23
3
HOH
HOH
94
A
HOH
24
3
HOH
HOH
95
A
HOH
25
3
HOH
HOH
96
A
HOH
26
3
HOH
HOH
97
A
HOH
27
3
HOH
HOH
98
A
HOH
28
3
HOH
HOH
99
A
HOH
31
3
HOH
HOH
100
A
HOH
43
3
HOH
HOH
101
A
HOH
45
3
HOH
HOH
102
A
HOH
46
3
HOH
HOH
103
A
HOH
48
3
HOH
HOH
104
A
n
1
1
A
n
2
2
A
ARG
3
n
3
ARG
3
A
ILE
4
n
4
ILE
4
A
ARG
5
n
5
ARG
5
A
HIS
6
n
6
HIS
6
A
GLU
7
n
7
GLU
7
A
LYS
8
n
8
LYS
8
A
GLU
9
n
9
GLU
9
A
LYS
10
n
10
LYS
10
A
LEU
11
n
11
LEU
11
A
LEU
12
n
12
LEU
12
A
ALA
13
n
13
ALA
13
A
ASP
14
n
14
ASP
14
A
LEU
15
n
15
LEU
15
A
ASP
16
n
16
ASP
16
A
TRP
17
n
17
TRP
17
A
GLU
18
n
18
GLU
18
A
ILE
19
n
19
ILE
19
A
GLY
20
n
20
GLY
20
A
GLU
21
n
21
GLU
21
A
ILE
22
n
22
ILE
22
A
ALA
23
n
23
ALA
23
A
GLN
24
n
24
GLN
24
A
TYR
25
n
25
TYR
25
A
THR
26
n
26
THR
26
A
PRO
27
n
27
PRO
27
A
LEU
28
n
28
LEU
28
A
ILE
29
n
29
ILE
29
A
VAL
30
n
30
VAL
30
A
ASP
31
n
31
ASP
31
A
PHE
32
n
32
PHE
32
A
LEU
33
n
33
LEU
33
A
VAL
34
n
34
VAL
34
A
PRO
35
n
35
PRO
35
A
ASP
36
n
36
ASP
36
A
ASP
37
n
37
ASP
37
A
ILE
38
n
38
ILE
38
A
LEU
39
n
39
LEU
39
A
ALA
40
n
40
ALA
40
A
MSE
41
n
41
MSE
41
A
ALA
42
n
42
ALA
42
A
ALA
43
n
43
ALA
43
A
ASP
44
n
44
ASP
44
A
GLY
45
n
45
GLY
45
A
LEU
46
n
46
LEU
46
A
ALA
47
n
47
THR
47
A
PRO
48
n
48
PRO
48
A
GLU
49
n
49
GLU
49
A
LEU
50
n
50
LEU
50
A
LYS
51
n
51
LYS
51
A
GLU
52
n
52
GLU
52
A
LYS
53
n
53
LYS
53
A
ILE
54
n
54
ILE
54
A
GLN
55
n
55
GLN
55
A
ASN
56
n
56
ASN
56
A
GLU
57
n
57
GLU
57
A
ILE
58
n
58
ILE
58
A
ILE
59
n
59
ILE
59
A
GLU
60
n
60
GLU
60
A
ASN
61
n
61
ASN
61
A
HIS
62
n
62
HIS
62
A
ILE
63
n
63
ILE
63
A
ALA
64
n
64
ALA
64
A
LEU
65
n
65
LEU
65
A
MSE
66
n
66
MSE
66
A
ALA
67
n
67
ALA
67
A
LEU
68
n
68
LEU
68
A
GLU
69
n
69
GLU
69
A
GLU
70
n
70
GLU
70
A
TYR
71
n
71
TYR
71
A
SER
72
n
72
SER
72
A
SER
73
n
73
SER
73
A
LEU
74
n
74
LEU
74
A
n
75
75
A
n
76
76
A
n
77
77
A
n
78
78
A
n
79
79
A
n
80
80
A
n
81
81
A
15.7115
0.8802
-3.6312
2.8366
-0.8949
9.8071
0.0282
0.2866
-0.3206
-0.3195
-0.1878
-0.0773
-0.2079
-0.3979
0.1595
-0.0147
0.0042
-0.0198
0.1857
0.0085
0.0666
refined
5.5760
15.6010
42.2150
X-RAY DIFFRACTION
17.0582
6.5070
-4.8541
5.9722
-2.1677
9.2166
0.5687
-0.9847
1.4648
-0.1393
-0.1893
0.3171
-0.8746
0.2270
-0.3794
0.1194
0.0091
0.0071
0.1936
-0.0419
0.1468
refined
6.8640
24.8580
44.9870
X-RAY DIFFRACTION
11.6935
-0.4301
1.0597
19.9456
-2.3257
11.3174
0.0775
-0.1379
-0.9778
-0.1937
-0.0908
0.1192
0.6498
0.5637
0.0134
0.0762
0.0292
0.0004
0.2910
0.0388
0.1125
refined
13.6280
12.4290
41.7020
X-RAY DIFFRACTION
19.2670
1.6895
6.9287
17.5609
4.6719
18.2056
0.9593
-1.5353
-2.6002
0.5940
-0.4291
0.3115
1.6381
-0.5796
-0.5302
0.1608
-0.0183
-0.0952
0.5350
0.2716
0.3267
refined
11.0470
8.5920
51.4030
X-RAY DIFFRACTION
16.9231
20.5440
9.3590
46.2165
17.5850
11.6582
0.6150
-0.3575
0.9386
-0.3122
-0.9533
-0.7335
-1.6714
-1.1134
0.3383
0.5458
-0.0014
0.0580
0.3236
0.0237
0.1459
refined
22.0520
27.9450
51.7100
X-RAY DIFFRACTION
A
3
A
17
X-RAY DIFFRACTION
1
A
18
A
29
X-RAY DIFFRACTION
2
A
30
A
45
X-RAY DIFFRACTION
3
A
46
A
59
X-RAY DIFFRACTION
4
A
60
A
74
X-RAY DIFFRACTION
5
author_defined_assembly
1
monomeric
A
MSE
41
SELENOMETHIONINE
A
MSE
41
MET
A
MSE
66
SELENOMETHIONINE
A
MSE
66
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
MG
82
B
MG
1
A
CG
ARG
3
A
CG
ARG
3
0
Y
1
A
CD
ARG
3
A
CD
ARG
3
0
Y
1
A
NE
ARG
3
A
NE
ARG
3
0
Y
1
A
CZ
ARG
3
A
CZ
ARG
3
0
Y
1
A
NH1
ARG
3
A
NH1
ARG
3
0
Y
1
A
NH2
ARG
3
A
NH2
ARG
3
0
Y
1
A
CG
GLN
24
A
CG
GLN
24
0
Y
1
A
CD
GLN
24
A
CD
GLN
24
0
Y
1
A
OE1
GLN
24
A
OE1
GLN
24
0
Y
1
A
NE2
GLN
24
A
NE2
GLN
24
0
Y
1
A
OG1
THR
47
A
OG1
THR
47
1
Y
1
A
CG2
THR
47
A
CG2
THR
47
1
Y
1
A
CB
THR
47
A
CB
THR
47
0
Y
1
A
CD
GLU
69
A
CD
GLU
69
0
Y
1
A
OE1
GLU
69
A
OE1
GLU
69
0
Y
1
A
OE2
GLU
69
A
OE2
GLU
69
0
Y
1
A
C
LEU
74
A
C
LEU
74
0
Y
1
A
O
LEU
74
A
O
LEU
74
0
Y
1
A
MSE
1
A
MSE
1
1
Y
1
A
ALA
2
A
ALA
2
1
Y
1
A
GLU
75
A
GLU
75
1
Y
1
A
HIS
76
A
HIS
76
1
Y
1
A
HIS
77
A
HIS
77
1
Y
1
A
HIS
78
A
HIS
78
1
Y
1
A
HIS
79
A
HIS
79
1
Y
1
A
HIS
80
A
HIS
80
1
Y
1
A
HIS
81
A
HIS
81
1
Y
1
-20.51
1.90
110.30
89.79
A
A
A
N
CA
CB
THR
THR
THR
47
47
47
N
1
A
A
CB
CG
ARG
ARG
3
3
-0.183
0.027
1.521
1.338
N
1
A
A
CB
CG
GLN
GLN
24
24
-0.343
0.027
1.521
1.178
N
1
A
A
CA
CB
THR
THR
47
47
0.211
0.026
1.529
1.740
N
1
A
A
CG
CD
GLU
GLU
49
49
0.105
0.015
1.515
1.620
N
1
A
A
CD
OE1
GLU
GLU
49
49
0.131
0.011
1.252
1.383
N
1
A
A
CD
OE2
GLU
GLU
60
60
0.075
0.011
1.252
1.327
N
1
A
A
CG
CD
GLU
GLU
69
69
-0.109
0.015
1.515
1.406
N
1
A
ASP
16
83.41
14.68
1
A
THR
47
-144.72
-8.99
1
A
PRO
48
20.87
-114.58
54.050
0.11
0.00
0.00
0.11
0.00
-0.22
0.953
0.918
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.29351
0.22614
0.22922
0.22922
2.0
30.60
288
5923
4.6
99.84
14.241
0.172
RANDOM
1
THROUGHOUT
SAD
0.189
0.80
0.80
1.40
MAXIMUM LIKELIHOOD
MASK
0.189
0.188
2.0
30.60
22
600
1
0
577
0.027
0.022
582
2.064
2.001
793
6.941
5.000
75
44.606
26.923
26
21.884
15.000
106
6.797
15.000
1
0.143
0.200
94
0.015
0.021
430
1.026
1.500
363
1.742
2.000
586
2.984
3.000
219
4.588
4.500
205
0.293
0.290
2.05
16
430
813
20
99.33
43.8
2.0
30.6
3T4R
6220
0.072
1
20.62
10.56
99.8
0.455
2.00
2.05
2.88
813
1
3.7
99.3
data collection
DNA
phasing
SHELXD
refinement
REFMAC
5.5.0110
data reduction
XDS
data scaling
XSCALE
Phosphoprotein
Lettuce Necrotic Yellow Virus Phosphoprotein C-Terminal Domain
1
N
N
2
N
N
3
N
N
A
ARG
3
A
ARG
3
HELX_P
A
LEU
15
A
LEU
15
1
1
13
A
GLU
18
A
GLU
18
HELX_P
A
ALA
23
A
ALA
23
1
2
6
A
THR
26
A
THR
26
HELX_P
A
VAL
34
A
VAL
34
1
3
9
A
PRO
35
A
PRO
35
HELX_P
A
ALA
42
A
ALA
42
1
4
8
A
GLU
49
A
GLU
49
HELX_P
A
LEU
74
A
LEU
74
1
5
26
covale
1.327
A
ALA
40
A
C
ALA
40
1_555
A
MSE
41
A
N
MSE
41
1_555
covale
1.333
A
MSE
41
A
C
MSE
41
1_555
A
ALA
42
A
N
ALA
42
1_555
covale
1.325
A
LEU
65
A
C
LEU
65
1_555
A
MSE
66
A
N
MSE
66
1_555
covale
1.327
A
MSE
66
A
C
MSE
66
1_555
A
ALA
67
A
N
ALA
67
1_555
metalc
2.613
A
ASP
36
A
OD2
ASP
36
1_555
A
MG
82
B
MG
MG
1_555
VIRAL PROTEIN
Helical bundle, Nucleoprotein, VIRAL PROTEIN
A
LEU
46
A
LEU
46
1
A
THR
47
A
THR
47
6.03
VP4A_LNYV3
UNP
1
230
Q9E7N7
RIRHEKEKLLADLDWEIGEIAQYTPLIVDFLVPDDILAMAADGLTPELKEKIQNEIIENHIALMALEEYSS
230
300
3T4R
3
73
Q9E7N7
A
1
3
73
1
EXPRESSION TAG
MSE
1
3T4R
A
Q9E7N7
UNP
1
1
EXPRESSION TAG
ALA
2
3T4R
A
Q9E7N7
UNP
2
1
EXPRESSION TAG
LEU
74
3T4R
A
Q9E7N7
UNP
74
1
EXPRESSION TAG
GLU
75
3T4R
A
Q9E7N7
UNP
75
1
EXPRESSION TAG
HIS
76
3T4R
A
Q9E7N7
UNP
76
1
EXPRESSION TAG
HIS
77
3T4R
A
Q9E7N7
UNP
77
1
EXPRESSION TAG
HIS
78
3T4R
A
Q9E7N7
UNP
78
1
EXPRESSION TAG
HIS
79
3T4R
A
Q9E7N7
UNP
79
1
EXPRESSION TAG
HIS
80
3T4R
A
Q9E7N7
UNP
80
1
EXPRESSION TAG
HIS
81
3T4R
A
Q9E7N7
UNP
81
BINDING SITE FOR RESIDUE MG A 82
Software
2
A
ASP
36
A
ASP
36
2
1_555
A
ASP
36
A
ASP
36
2
7_555
91
P 41 2 2