0.015864 0.009159 0.000000 0.000000 0.018319 0.000000 0.000000 0.000000 0.023591 0.00000 0.00000 0.00000 Collie, G.W. Promontorio, R. Parkinson, G.N. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 63.034 63.034 42.389 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer K 1 39.098 POTASSIUM ION non-polymer C50 H80 N12 O4 913.248 2,7-bis[4-(4-methylpiperazin-1-yl)butyl]-4,9-bis{[4-(4-methylpiperazin-1-yl)butyl]amino}benzo[lmn][3,8]phenanthroline-1 ,3,6,8(2H,7H)-tetrone BMSG-SH2 non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C Y 49 N N Y 50 N C Y 51 N N Y 52 N C N 53 N C N 54 N O N 55 N N N 56 N C N 57 N N N 58 N N Y 59 N C N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N O N 75 N P N 76 N O N 77 N O N 78 N O N 79 N C N 80 R C N 81 N O N 82 S C N 83 N O N 84 N C N 85 R C N 86 N N N 87 N C N 88 N O N 89 N N N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N O N 111 N H N 112 N H N 113 N K N 114 N C N 115 N C N 116 N C N 117 N C N 118 N O N 119 N O N 120 N O N 121 N O Y 122 N C Y 123 N C N 124 N C N 125 N C N 126 N C N 127 N C N 128 N C N 129 N C N 130 N C N 131 N C N 132 N C N 133 N C N 134 N C N 135 N C N 136 N C N 137 N C N 138 N C N 139 N C N 140 N C N 141 N C N 142 N C N 143 N C N 144 N C N 145 N C N 146 N C N 147 N C N 148 N C N 149 N C N 150 N C N 151 N C N 152 N C N 153 N C N 154 N C N 155 N C N 156 N N N 157 N N Y 158 N C Y 159 N C N 160 N C N 161 N C N 162 N C N 163 N C Y 164 N C Y 165 N C Y 166 N C Y 167 N C Y 168 N C Y 169 N C N 170 N N N 171 N N N 172 N N N 173 N N N 174 N N N 175 N N N 176 N N N 177 N N N 178 N N N 179 N N N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing Y 62 N sing Y 63 N sing Y 64 N doub N 65 N sing Y 66 N sing N 67 N sing Y 68 N doub N 69 N doub N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N doub N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N doub N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N doub N 108 N sing N 109 N sing N 110 N doub N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N doub N 134 N doub N 135 N doub N 136 N doub Y 137 N doub Y 138 N sing N 139 N sing Y 140 N doub Y 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing Y 255 N sing Y 256 N doub N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing Y 265 N sing Y 266 N doub Y 267 N doub Y 268 N sing Y 269 N sing US J.Am.Chem.Soc. JACSAT 0004 0002-7863 134 2723 2731 10.1021/ja2102423 22280460 Structural basis for telomeric g-quadruplex targeting by naphthalene diimide ligands. 2012 10.2210/pdb3t5e/pdb pdb_00003t5e 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2011-07-07 ADSC QUANTUM 315r Si III channel SINGLE WAVELENGTH M x-ray 1 0.97949 1.0 I02 Diamond 0.97949 SYNCHROTRON DIAMOND BEAMLINE I02 6983.497 human telomeric DNA sequence 1 syn polymer 913.248 2,7-bis[4-(4-methylpiperazin-1-yl)butyl]-4,9-bis{[4-(4-methylpiperazin-1-yl)butyl]amino}benzo[lmn][3,8]phenanthroline-1 ,3,6,8(2H,7H)-tetrone 1 syn non-polymer 39.098 POTASSIUM ION 3 syn non-polymer 18.015 water 38 nat water no no (DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG) (DG)(DG) AGGGTTAGGGTTAGGGTTAGGG A polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n 1 3.48 64.67 VAPOR DIFFUSION, HANGING DROP 6.5 15% PEG400, 300 mM KBr, 50 mM sodium cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 283K 283 chem_comp chem_comp_atom chem_comp_bond database_2 entity pdbx_entity_nonpoly pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_site repository Initial release Database references Data collection Database references Derived calculations Refinement description Structure summary 1 0 2012-02-15 1 1 2012-02-22 1 2 2023-09-13 _chem_comp.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _entity.pdbx_description _pdbx_entity_nonpoly.name _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Same G-quadruplex bound by a related naphthalene diimide compound BMSG-SH1 Equivalent native G-quadruplex RCSB Y RCSB 2011-07-27 REL REL T5E 2,7-bis[4-(4-methylpiperazin-1-yl)butyl]-4,9-bis{[4-(4-methylpiperazin-1-yl)butyl]amino}benzo[lmn][3,8]phenanthroline-1 ,3,6,8(2H,7H)-tetrone K POTASSIUM ION HOH water DNA sequence synthesised by standard phosphoramidite chemistry sample 1KF1 PDB entry 1KF1 PDB experimental model T5E 1 2 T5E T5E 23 A K 24 3 K K 24 A K 25 3 K K 25 A K 26 3 K K 26 A HOH 27 4 HOH HOH 27 A HOH 28 4 HOH HOH 28 A HOH 29 4 HOH HOH 29 A HOH 30 4 HOH HOH 30 A HOH 31 4 HOH HOH 31 A HOH 32 4 HOH HOH 32 A HOH 1 4 HOH HOH 33 A HOH 34 4 HOH HOH 34 A HOH 2 4 HOH HOH 35 A HOH 36 4 HOH HOH 36 A HOH 37 4 HOH HOH 37 A HOH 38 4 HOH HOH 38 A HOH 4 4 HOH HOH 39 A HOH 6 4 HOH HOH 40 A HOH 7 4 HOH HOH 41 A HOH 42 4 HOH HOH 42 A HOH 43 4 HOH HOH 43 A HOH 44 4 HOH HOH 44 A HOH 45 4 HOH HOH 45 A HOH 46 4 HOH HOH 46 A HOH 8 4 HOH HOH 47 A HOH 9 4 HOH HOH 48 A HOH 10 4 HOH HOH 49 A HOH 11 4 HOH HOH 50 A HOH 12 4 HOH HOH 51 A HOH 13 4 HOH HOH 52 A HOH 14 4 HOH HOH 53 A HOH 15 4 HOH HOH 54 A HOH 16 4 HOH HOH 55 A HOH 17 4 HOH HOH 56 A HOH 18 4 HOH HOH 57 A HOH 19 4 HOH HOH 58 A HOH 20 4 HOH HOH 59 A HOH 21 4 HOH HOH 60 A HOH 22 4 HOH HOH 61 A HOH 23 4 HOH HOH 62 A HOH 24 4 HOH HOH 63 A HOH 25 4 HOH HOH 64 A A 1 n 1 DA 1 A G 2 n 2 DG 2 A G 3 n 3 DG 3 A G 4 n 4 DG 4 A T 5 n 5 DT 5 A T 6 n 6 DT 6 A A 7 n 7 DA 7 A G 8 n 8 DG 8 A G 9 n 9 DG 9 A G 10 n 10 DG 10 A T 11 n 11 DT 11 A T 12 n 12 DT 12 A A 13 n 13 DA 13 A G 14 n 14 DG 14 A G 15 n 15 DG 15 A G 16 n 16 DG 16 A T 17 n 17 DT 17 A T 18 n 18 DT 18 A A 19 n 19 DA 19 A G 20 n 20 DG 20 A G 21 n 21 DG 21 A G 22 n 22 DG 22 A 0.0016 -0.0006 0.0001 0.0002 -0.0001 0.0000 -0.4401 -0.5931 0.9488 0.2709 0.2411 0.0693 -0.7166 -0.5570 0.1989 0.1236 0.0000 0.0000 0.1236 0.0000 0.1236 refined -32.0340 7.3756 -4.6732 X-RAY DIFFRACTION 0.0383 -0.0870 -0.6211 0.1979 1.4122 10.0792 -0.0118 -0.3085 0.1188 0.3177 0.0804 -0.1556 0.0824 0.2819 -0.0685 0.1108 -0.0017 -0.0013 0.1122 0.0032 0.1354 refined -26.0653 1.0155 1.5139 X-RAY DIFFRACTION 1.1106 -3.0983 0.0671 8.6439 -0.1872 0.0041 0.0152 0.2214 -0.2858 -0.2446 0.0211 -0.6145 0.3820 0.5307 -0.0364 0.1983 -0.0062 -0.0014 0.2132 -0.0009 0.1955 refined -17.7297 -5.6219 -11.1316 X-RAY DIFFRACTION 2.2129 0.8673 0.4796 0.5016 -0.8601 6.8960 0.0808 0.3244 0.0534 -0.4719 -0.0705 -0.0607 -0.1696 0.0329 -0.0103 0.1063 -0.0068 -0.0004 0.1076 0.0017 0.1394 refined -28.6497 4.6698 -17.9263 X-RAY DIFFRACTION A 1 A 4 X-RAY DIFFRACTION 1 A 5 A 9 X-RAY DIFFRACTION 2 A 10 A 13 X-RAY DIFFRACTION 3 A 14 A 22 X-RAY DIFFRACTION 4 author_and_software_defined_assembly PISA 1 monomeric A DG 2 A O6 DG 2 1_555 A K 25 D K K 1_555 A DG 3 A O6 DG 3 1_555 75.9 A DG 2 A O6 DG 2 1_555 A K 25 D K K 1_555 A DG 8 A O6 DG 8 1_555 68.0 A DG 3 A O6 DG 3 1_555 A K 25 D K K 1_555 A DG 8 A O6 DG 8 1_555 90.1 A DG 2 A O6 DG 2 1_555 A K 25 D K K 1_555 A DG 9 A O6 DG 9 1_555 132.9 A DG 3 A O6 DG 3 1_555 A K 25 D K K 1_555 A DG 9 A O6 DG 9 1_555 71.2 A DG 8 A O6 DG 8 1_555 A K 25 D K K 1_555 A DG 9 A O6 DG 9 1_555 79.2 A DG 2 A O6 DG 2 1_555 A K 25 D K K 1_555 A DG 14 A O6 DG 14 1_555 108.2 A DG 3 A O6 DG 3 1_555 A K 25 D K K 1_555 A DG 14 A O6 DG 14 1_555 154.5 A DG 8 A O6 DG 8 1_555 A K 25 D K K 1_555 A DG 14 A O6 DG 14 1_555 69.4 A DG 9 A O6 DG 9 1_555 A K 25 D K K 1_555 A DG 14 A O6 DG 14 1_555 89.7 A DG 2 A O6 DG 2 1_555 A K 25 D K K 1_555 A DG 15 A O6 DG 15 1_555 155.0 A DG 3 A O6 DG 3 1_555 A K 25 D K K 1_555 A DG 15 A O6 DG 15 1_555 112.2 A DG 8 A O6 DG 8 1_555 A K 25 D K K 1_555 A DG 15 A O6 DG 15 1_555 133.2 A DG 9 A O6 DG 9 1_555 A K 25 D K K 1_555 A DG 15 A O6 DG 15 1_555 70.8 A DG 14 A O6 DG 14 1_555 A K 25 D K K 1_555 A DG 15 A O6 DG 15 1_555 75.1 A DG 2 A O6 DG 2 1_555 A K 25 D K K 1_555 A DG 20 A O6 DG 20 1_555 71.7 A DG 3 A O6 DG 3 1_555 A K 25 D K K 1_555 A DG 20 A O6 DG 20 1_555 132.9 A DG 8 A O6 DG 8 1_555 A K 25 D K K 1_555 A DG 20 A O6 DG 20 1_555 107.8 A DG 9 A O6 DG 9 1_555 A K 25 D K K 1_555 A DG 20 A O6 DG 20 1_555 153.4 A DG 14 A O6 DG 14 1_555 A K 25 D K K 1_555 A DG 20 A O6 DG 20 1_555 70.1 A DG 15 A O6 DG 15 1_555 A K 25 D K K 1_555 A DG 20 A O6 DG 20 1_555 87.0 A DG 2 A O6 DG 2 1_555 A K 25 D K K 1_555 A DG 21 A O6 DG 21 1_555 89.9 A DG 3 A O6 DG 3 1_555 A K 25 D K K 1_555 A DG 21 A O6 DG 21 1_555 71.0 A DG 8 A O6 DG 8 1_555 A K 25 D K K 1_555 A DG 21 A O6 DG 21 1_555 154.1 A DG 9 A O6 DG 9 1_555 A K 25 D K K 1_555 A DG 21 A O6 DG 21 1_555 109.5 A DG 14 A O6 DG 14 1_555 A K 25 D K K 1_555 A DG 21 A O6 DG 21 1_555 133.0 A DG 15 A O6 DG 15 1_555 A K 25 D K K 1_555 A DG 21 A O6 DG 21 1_555 71.9 A DG 20 A O6 DG 20 1_555 A K 25 D K K 1_555 A DG 21 A O6 DG 21 1_555 75.7 A DG 2 A O6 DG 2 1_555 A K 26 E K K 1_555 A DG 8 A O6 DG 8 1_555 64.8 A DG 2 A O6 DG 2 1_555 A K 26 E K K 1_555 A DG 14 A O6 DG 14 1_555 103.1 A DG 8 A O6 DG 8 1_555 A K 26 E K K 1_555 A DG 14 A O6 DG 14 1_555 70.1 A DG 2 A O6 DG 2 1_555 A K 26 E K K 1_555 A DG 20 A O6 DG 20 1_555 67.2 A DG 8 A O6 DG 8 1_555 A K 26 E K K 1_555 A DG 20 A O6 DG 20 1_555 105.3 A DG 14 A O6 DG 14 1_555 A K 26 E K K 1_555 A DG 20 A O6 DG 20 1_555 69.4 A DG 3 A O6 DG 3 1_555 A K 24 C K K 1_555 A DG 4 A O6 DG 4 1_555 73.3 A DG 3 A O6 DG 3 1_555 A K 24 C K K 1_555 A DG 9 A O6 DG 9 1_555 62.9 A DG 4 A O6 DG 4 1_555 A K 24 C K K 1_555 A DG 9 A O6 DG 9 1_555 93.2 A DG 3 A O6 DG 3 1_555 A K 24 C K K 1_555 A DG 10 A O6 DG 10 1_555 126.1 A DG 4 A O6 DG 4 1_555 A K 24 C K K 1_555 A DG 10 A O6 DG 10 1_555 77.7 A DG 9 A O6 DG 9 1_555 A K 24 C K K 1_555 A DG 10 A O6 DG 10 1_555 74.8 A DG 3 A O6 DG 3 1_555 A K 24 C K K 1_555 A DG 15 A O6 DG 15 1_555 97.0 A DG 4 A O6 DG 4 1_555 A K 24 C K K 1_555 A DG 15 A O6 DG 15 1_555 154.9 A DG 9 A O6 DG 9 1_555 A K 24 C K K 1_555 A DG 15 A O6 DG 15 1_555 62.1 A DG 10 A O6 DG 10 1_555 A K 24 C K K 1_555 A DG 15 A O6 DG 15 1_555 90.7 A DG 3 A O6 DG 3 1_555 A K 24 C K K 1_555 A DG 16 A O6 DG 16 1_555 155.6 A DG 4 A O6 DG 4 1_555 A K 24 C K K 1_555 A DG 16 A O6 DG 16 1_555 124.3 A DG 9 A O6 DG 9 1_555 A K 24 C K K 1_555 A DG 16 A O6 DG 16 1_555 125.9 A DG 10 A O6 DG 10 1_555 A K 24 C K K 1_555 A DG 16 A O6 DG 16 1_555 77.1 A DG 15 A O6 DG 15 1_555 A K 24 C K K 1_555 A DG 16 A O6 DG 16 1_555 73.2 A DG 3 A O6 DG 3 1_555 A K 24 C K K 1_555 A DG 21 A O6 DG 21 1_555 64.7 A DG 4 A O6 DG 4 1_555 A K 24 C K K 1_555 A DG 21 A O6 DG 21 1_555 126.3 A DG 9 A O6 DG 9 1_555 A K 24 C K K 1_555 A DG 21 A O6 DG 21 1_555 95.8 A DG 10 A O6 DG 10 1_555 A K 24 C K K 1_555 A DG 21 A O6 DG 21 1_555 155.3 A DG 15 A O6 DG 15 1_555 A K 24 C K K 1_555 A DG 21 A O6 DG 21 1_555 65.0 A DG 16 A O6 DG 16 1_555 A K 24 C K K 1_555 A DG 21 A O6 DG 21 1_555 91.0 A DG 3 A O6 DG 3 1_555 A K 24 C K K 1_555 A DG 22 A O6 DG 22 1_555 91.6 A DG 4 A O6 DG 4 1_555 A K 24 C K K 1_555 A DG 22 A O6 DG 22 1_555 76.9 A DG 9 A O6 DG 9 1_555 A K 24 C K K 1_555 A DG 22 A O6 DG 22 1_555 154.4 A DG 10 A O6 DG 10 1_555 A K 24 C K K 1_555 A DG 22 A O6 DG 22 1_555 124.5 A DG 15 A O6 DG 15 1_555 A K 24 C K K 1_555 A DG 22 A O6 DG 22 1_555 127.3 A DG 16 A O6 DG 16 1_555 A K 24 C K K 1_555 A DG 22 A O6 DG 22 1_555 78.0 A DG 21 A O6 DG 21 1_555 A K 24 C K K 1_555 A DG 22 A O6 DG 22 1_555 72.5 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A K 26 E K 1 1.80 0.30 108.30 110.10 A A A O4' C1' N9 DG DG DG 3 3 3 N 1 -4.38 0.70 108.00 103.62 A A A O4' C1' N9 DA DA DA 7 7 7 N 1 -5.68 0.80 109.40 103.72 A A A O5' C5' C4' DG DG DG 14 14 14 N 40.688 -0.12 -0.06 0.00 -0.12 0.00 0.19 0.945 0.935 HYDROGENS HAVE BEEN ADED IN THE RIDING POSITIONS 0.28158 0.24286 0.24474 0.24474 2.10 10.20 262 5372 5372 4.7 100.00 9.672 0.134 RANDOM 1 Isotropic plus TLS THROUGHOUT MOLECULAR REPLACEMENT 0.223 0.196 PDB entry 1KF1 MAXIMUM LIKELIHOOD 2.10 10.20 38 572 69 465 0 0.008 0.021 597 1.622 2.999 914 0.055 0.200 87 0.006 0.020 272 1.465 3.000 597 2.359 4.500 914 0.448 0.385 2.152 15 373 20 100.00 42.15 1.94 54.59 3T5E 7197 7197 2.0 2.0 0.06 1 15.2 8.9 99.6 0.66 1.94 1.99 2.0 531 1 7.0 100 data collection GDA phasing PHASER refinement REFMAC 5.5.0072 data reduction XDS data scaling SCALA Crystal structure of an intramolecular human telomeric DNA G-quadruplex bound by the naphthalene diimide BMSG-SH-4 1 N N 2 N N 3 N N 3 N N 3 N N 4 N N metalc 2.642 A DG 2 A O6 DG 2 1_555 A K 25 D K K 1_555 metalc 2.876 A DG 2 A O6 DG 2 1_555 A K 26 E K K 1_555 metalc 2.971 A DG 3 A O6 DG 3 1_555 A K 24 C K K 1_555 metalc 2.698 A DG 3 A O6 DG 3 1_555 A K 25 D K K 1_555 metalc 2.683 A DG 4 A O6 DG 4 1_555 A K 24 C K K 1_555 metalc 2.772 A DG 8 A O6 DG 8 1_555 A K 25 D K K 1_555 metalc 2.772 A DG 8 A O6 DG 8 1_555 A K 26 E K K 1_555 metalc 2.917 A DG 9 A O6 DG 9 1_555 A K 24 C K K 1_555 metalc 2.574 A DG 9 A O6 DG 9 1_555 A K 25 D K K 1_555 metalc 2.590 A DG 10 A O6 DG 10 1_555 A K 24 C K K 1_555 metalc 2.802 A DG 14 A O6 DG 14 1_555 A K 25 D K K 1_555 metalc 2.755 A DG 14 A O6 DG 14 1_555 A K 26 E K K 1_555 metalc 3.051 A DG 15 A O6 DG 15 1_555 A K 24 C K K 1_555 metalc 2.737 A DG 15 A O6 DG 15 1_555 A K 25 D K K 1_555 metalc 2.626 A DG 16 A O6 DG 16 1_555 A K 24 C K K 1_555 metalc 2.787 A DG 20 A O6 DG 20 1_555 A K 25 D K K 1_555 metalc 2.876 A DG 20 A O6 DG 20 1_555 A K 26 E K K 1_555 metalc 2.964 A DG 21 A O6 DG 21 1_555 A K 24 C K K 1_555 metalc 2.770 A DG 21 A O6 DG 21 1_555 A K 25 D K K 1_555 metalc 2.714 A DG 22 A O6 DG 22 1_555 A K 24 C K K 1_555 hydrog TYPE_6_PAIR A DG 2 A N1 DG 2 1_555 A DG 8 A O6 DG 8 1_555 hydrog TYPE_6_PAIR A DG 2 A N2 DG 2 1_555 A DG 8 A N7 DG 8 1_555 hydrog TYPE_6_PAIR A DG 2 A N7 DG 2 1_555 A DG 20 A N2 DG 20 1_555 hydrog TYPE_6_PAIR A DG 2 A O6 DG 2 1_555 A DG 20 A N1 DG 20 1_555 hydrog TYPE_6_PAIR A DG 3 A N1 DG 3 1_555 A DG 9 A O6 DG 9 1_555 hydrog TYPE_6_PAIR A DG 3 A N2 DG 3 1_555 A DG 9 A N7 DG 9 1_555 hydrog TYPE_6_PAIR A DG 3 A N7 DG 3 1_555 A DG 21 A N2 DG 21 1_555 hydrog TYPE_6_PAIR A DG 3 A O6 DG 3 1_555 A DG 21 A N1 DG 21 1_555 hydrog TYPE_6_PAIR A DG 4 A N1 DG 4 1_555 A DG 10 A O6 DG 10 1_555 hydrog TYPE_6_PAIR A DG 4 A N2 DG 4 1_555 A DG 10 A N7 DG 10 1_555 hydrog TYPE_6_PAIR A DG 4 A N7 DG 4 1_555 A DG 22 A N2 DG 22 1_555 hydrog TYPE_6_PAIR A DG 4 A O6 DG 4 1_555 A DG 22 A N1 DG 22 1_555 hydrog TYPE_6_PAIR A DG 8 A N1 DG 8 1_555 A DG 14 A O6 DG 14 1_555 hydrog TYPE_6_PAIR A DG 8 A N2 DG 8 1_555 A DG 14 A N7 DG 14 1_555 hydrog TYPE_6_PAIR A DG 9 A N1 DG 9 1_555 A DG 15 A O6 DG 15 1_555 hydrog TYPE_6_PAIR A DG 9 A N2 DG 9 1_555 A DG 15 A N7 DG 15 1_555 hydrog TYPE_6_PAIR A DG 10 A N1 DG 10 1_555 A DG 16 A O6 DG 16 1_555 hydrog TYPE_6_PAIR A DG 10 A N2 DG 10 1_555 A DG 16 A N7 DG 16 1_555 hydrog TYPE_6_PAIR A DG 14 A N1 DG 14 1_555 A DG 20 A O6 DG 20 1_555 hydrog TYPE_6_PAIR A DG 14 A N2 DG 14 1_555 A DG 20 A N7 DG 20 1_555 hydrog TYPE_6_PAIR A DG 15 A N1 DG 15 1_555 A DG 21 A O6 DG 21 1_555 hydrog TYPE_6_PAIR A DG 15 A N2 DG 15 1_555 A DG 21 A N7 DG 21 1_555 hydrog TYPE_6_PAIR A DG 16 A N1 DG 16 1_555 A DG 22 A O6 DG 22 1_555 hydrog TYPE_6_PAIR A DG 16 A N2 DG 16 1_555 A DG 22 A N7 DG 22 1_555 DNA G-quadruplex, intramolecular, ligand-complex, telomeric, DNA 3T5E PDB 1 1 3T5E AGGGTTAGGGTTAGGGTTAGGG 1 22 3T5E 1 22 3T5E A 1 1 22 BINDING SITE FOR RESIDUE T5E A 23 A T5E 23 Software 12 BINDING SITE FOR RESIDUE K A 24 A K 24 Software 9 BINDING SITE FOR RESIDUE K A 25 A K 25 Software 11 BINDING SITE FOR RESIDUE K A 26 A K 26 Software 10 A DA 1 A DA 1 12 2_565 A DG 4 A DG 4 12 1_555 A DG 8 A DG 8 12 1_555 A DG 9 A DG 9 12 1_555 A DG 10 A DG 10 12 1_555 A DT 11 A DT 11 12 1_555 A DT 12 A DT 12 12 5_555 A DA 13 A DA 13 12 1_555 A DG 16 A DG 16 12 1_555 A DT 17 A DT 17 12 1_555 A DG 21 A DG 21 12 1_555 A DG 22 A DG 22 12 1_555 A DG 3 A DG 3 9 1_555 A DG 4 A DG 4 9 1_555 A DG 9 A DG 9 9 1_555 A DG 10 A DG 10 9 1_555 A DG 15 A DG 15 9 1_555 A DG 16 A DG 16 9 1_555 A DG 21 A DG 21 9 1_555 A DG 22 A DG 22 9 1_555 A K 25 D K 9 1_555 A DG 2 A DG 2 11 1_555 A DG 3 A DG 3 11 1_555 A DG 8 A DG 8 11 1_555 A DG 9 A DG 9 11 1_555 A DG 14 A DG 14 11 1_555 A DG 15 A DG 15 11 1_555 A DG 20 A DG 20 11 1_555 A DG 21 A DG 21 11 1_555 A K 24 C K 11 1_555 A K 26 E K 11 4_455 A K 26 E K 11 1_555 A DG 2 A DG 2 10 4_455 A DG 2 A DG 2 10 1_555 A DG 8 A DG 8 10 4_455 A DG 8 A DG 8 10 1_555 A DG 14 A DG 14 10 4_455 A DG 14 A DG 14 10 1_555 A DG 20 A DG 20 10 1_555 A DG 20 A DG 20 10 4_455 A K 25 D K 10 1_555 A K 25 D K 10 4_455 168 P 6