0.010547
0.000000
0.000000
0.000000
0.009722
0.000000
0.000000
0.000000
0.018815
0.00000
0.00000
0.00000
Banerjee, S.
Christov, P.P.
Kozekova, A.
Rizzo, C.J.
Stone, M.P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
94.815
102.861
53.148
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H16 N5 O13 P3
507.181
2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE
non-polymer
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C19 H30 N5 O9 P
503.443
n
(6S,8R)-3-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-8-hydroxy-6-[(1S)-1-hydroxyhexyl]-4,6,7,8-tetrahydropyrimido[1,2-a]purin-10(3H)-one
DNA linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CA
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
O
N
90
N
P
N
91
N
O
N
92
N
O
N
93
N
O
N
94
N
C
N
95
R
C
N
96
N
O
N
97
S
C
N
98
N
O
N
99
N
C
N
100
R
C
Y
101
N
N
Y
102
N
C
Y
103
N
N
Y
104
N
C
Y
105
N
C
N
106
N
N
Y
107
N
N
Y
108
N
C
Y
109
N
N
Y
110
N
C
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
O
N
126
N
P
N
127
N
O
N
128
N
O
N
129
N
O
N
130
N
C
N
131
R
C
N
132
N
O
N
133
S
C
N
134
N
O
N
135
N
C
N
136
R
C
N
137
N
N
N
138
N
C
N
139
N
O
N
140
N
N
N
141
N
C
N
142
N
N
N
143
N
C
N
144
N
C
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
O
N
160
N
P
N
161
N
O
N
162
N
O
N
163
N
O
N
164
N
C
N
165
R
C
N
166
N
O
N
167
S
C
N
168
N
O
N
169
N
C
N
170
R
C
Y
171
N
N
Y
172
N
C
Y
173
N
N
Y
174
N
C
N
175
N
C
N
176
N
O
N
177
N
N
N
178
N
C
N
179
N
N
N
180
N
N
Y
181
N
C
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
P
N
197
N
O
N
198
N
O
N
199
N
O
N
200
N
O
N
201
S
P
N
202
N
O
N
203
N
O
N
204
N
O
N
205
R
P
N
206
N
O
N
207
N
O
N
208
N
O
N
209
N
C
N
210
R
C
N
211
N
O
N
212
S
C
N
213
N
O
N
214
N
C
N
215
R
C
Y
216
N
N
Y
217
N
C
Y
218
N
N
Y
219
N
C
N
220
N
C
N
221
N
O
N
222
N
N
N
223
N
C
N
224
N
N
N
225
N
N
Y
226
N
C
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
O
N
244
N
P
N
245
N
O
N
246
N
O
N
247
N
O
N
248
N
C
N
249
R
C
N
250
N
O
N
251
S
C
N
252
N
O
N
253
N
C
N
254
R
C
N
255
N
N
N
256
N
C
N
257
N
O
N
258
N
N
N
259
N
C
N
260
N
O
N
261
N
C
N
262
N
C
N
263
N
C
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
N
N
280
S
C
N
281
N
C
N
282
N
O
N
283
N
C
N
284
N
C
N
285
N
C
N
286
N
O
N
287
N
N
N
288
N
O
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
N
N
300
S
C
N
301
N
C
N
302
N
O
N
303
N
C
N
304
N
C
N
305
N
C
N
306
N
O
N
307
N
O
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
N
C
N
320
N
C
N
321
N
O
N
322
N
O
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
N
N
329
S
C
N
330
N
C
N
331
N
O
N
332
N
C
Y
333
N
C
Y
334
N
N
Y
335
N
C
Y
336
N
C
Y
337
N
N
N
338
N
O
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
C
N
350
N
P
N
351
R
C
N
352
N
N
N
353
N
C
N
354
N
N
N
355
S
C
N
356
N
N
Y
357
N
C
Y
358
N
C
N
359
N
C
N
360
N
O
N
361
S
C
Y
362
N
N
Y
363
N
C
N
364
N
C
Y
365
N
N
N
366
R
C
N
367
N
C
N
368
N
O
N
369
N
C
N
370
N
O
N
371
N
C
N
372
N
C
N
373
N
O
N
374
N
C
N
375
N
O
N
376
S
C
N
377
N
O
N
378
R
C
N
379
N
O
N
380
N
C
N
381
N
O
N
382
N
O
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
O
N
414
N
H
N
415
N
H
N
416
N
N
N
417
S
C
N
418
N
C
N
419
N
O
N
420
S
C
N
421
N
C
N
422
N
C
N
423
N
C
N
424
N
O
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
N
N
439
S
C
N
440
N
C
N
441
N
O
N
442
N
C
N
443
N
C
N
444
N
C
N
445
N
C
N
446
N
O
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
N
N
461
S
C
N
462
N
C
N
463
N
O
N
464
N
C
N
465
N
C
N
466
N
C
N
467
N
C
N
468
N
N
N
469
N
O
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
N
N
486
S
C
N
487
N
C
N
488
N
O
N
489
N
C
N
490
N
C
N
491
N
S
N
492
N
C
N
493
N
O
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
N
N
506
S
C
N
507
N
C
N
508
N
O
N
509
N
C
Y
510
N
C
Y
511
N
C
Y
512
N
C
Y
513
N
C
Y
514
N
C
Y
515
N
C
N
516
N
O
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
H
N
523
N
H
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
N
N
529
S
C
N
530
N
C
N
531
N
O
N
532
N
C
N
533
N
C
N
534
N
C
N
535
N
O
N
536
N
H
N
537
N
H
N
538
N
H
N
539
N
H
N
540
N
H
N
541
N
H
N
542
N
H
N
543
N
H
N
544
N
H
N
545
N
N
N
546
S
C
N
547
N
C
N
548
N
O
N
549
N
C
N
550
N
O
N
551
N
O
N
552
N
H
N
553
N
H
N
554
N
H
N
555
N
H
N
556
N
H
N
557
N
H
N
558
N
H
N
559
N
N
N
560
S
C
N
561
N
C
N
562
N
O
N
563
R
C
N
564
N
O
N
565
N
C
N
566
N
O
N
567
N
H
N
568
N
H
N
569
N
H
N
570
N
H
N
571
N
H
N
572
N
H
N
573
N
H
N
574
N
H
N
575
N
H
N
576
N
N
N
577
S
C
N
578
N
C
N
579
N
O
N
580
N
C
Y
581
N
C
Y
582
N
C
Y
583
N
C
Y
584
N
C
Y
585
N
C
Y
586
N
C
N
587
N
O
N
588
N
O
N
589
N
H
N
590
N
H
N
591
N
H
N
592
N
H
N
593
N
H
N
594
N
H
N
595
N
H
N
596
N
H
N
597
N
H
N
598
N
H
N
599
N
H
N
600
N
N
N
601
S
C
N
602
N
C
N
603
N
O
N
604
N
C
N
605
N
C
N
606
N
C
N
607
N
O
N
608
N
H
N
609
N
H
N
610
N
H
N
611
N
H
N
612
N
H
N
613
N
H
N
614
N
H
N
615
N
H
N
616
N
H
N
617
N
H
N
618
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
doub
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
doub
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
doub
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
Y
228
N
sing
Y
229
N
sing
N
230
N
sing
Y
231
N
doub
Y
232
N
sing
N
233
N
sing
Y
234
N
doub
N
235
N
sing
N
236
N
doub
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
doub
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
doub
N
274
N
sing
N
275
N
sing
N
276
N
doub
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
doub
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
doub
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
doub
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
doub
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
Y
338
N
sing
Y
339
N
doub
Y
340
N
doub
N
341
N
sing
Y
342
N
sing
N
343
N
sing
Y
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
doub
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
doub
N
358
N
sing
N
359
N
sing
N
360
N
sing
Y
361
N
sing
Y
362
N
doub
Y
363
N
sing
N
364
N
sing
N
365
N
doub
N
366
N
sing
Y
367
N
doub
Y
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
doub
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
doub
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
doub
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
doub
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
doub
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
Y
513
N
doub
Y
514
N
sing
Y
515
N
sing
N
516
N
sing
Y
517
N
doub
N
518
N
sing
Y
519
N
doub
N
520
N
sing
Y
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
sing
N
531
N
doub
N
532
N
sing
N
533
N
sing
N
534
N
sing
N
535
N
sing
N
536
N
sing
N
537
N
sing
N
538
N
sing
N
539
N
sing
N
540
N
sing
N
541
N
sing
N
542
N
sing
N
543
N
sing
N
544
N
sing
N
545
N
sing
N
546
N
sing
N
547
N
sing
N
548
N
doub
N
549
N
sing
N
550
N
sing
N
551
N
sing
N
552
N
sing
N
553
N
sing
N
554
N
sing
N
555
N
sing
N
556
N
sing
N
557
N
sing
N
558
N
sing
N
559
N
sing
N
560
N
sing
N
561
N
doub
N
562
N
sing
N
563
N
sing
N
564
N
sing
N
565
N
sing
N
566
N
sing
N
567
N
sing
N
568
N
sing
N
569
N
sing
N
570
N
sing
N
571
N
sing
N
572
N
sing
N
573
N
sing
N
574
N
sing
N
575
N
sing
N
576
N
sing
N
577
N
doub
N
578
N
sing
N
579
N
sing
N
580
N
sing
N
581
N
sing
Y
582
N
doub
Y
583
N
sing
Y
584
N
sing
N
585
N
sing
Y
586
N
doub
N
587
N
sing
Y
588
N
doub
N
589
N
sing
Y
590
N
sing
N
591
N
sing
N
592
N
sing
N
593
N
sing
N
594
N
sing
N
595
N
sing
N
596
N
sing
N
597
N
sing
N
598
N
sing
N
599
N
sing
N
600
N
sing
N
601
N
doub
N
602
N
sing
N
603
N
sing
N
604
N
sing
N
605
N
sing
N
606
N
sing
N
607
N
sing
N
608
N
sing
N
609
N
sing
N
610
N
sing
N
611
N
sing
N
612
N
sing
US
Chem.Res.Toxicol.
CRTOEC
2140
0893-228X
25
422
435
10.1021/tx200460j
22313351
Replication bypass of the trans-4-Hydroxynonenal-derived (6S,8R,11S)-1,N(2)-deoxyguanosine DNA adduct by the sulfolobus solfataricus DNA polymerase IV.
2012
10.2210/pdb3t5h/pdb
pdb_00003t5h
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
CCD
MARMOSAIC 300 mm CCD
SINGLE WAVELENGTH
M
x-ray
1
1.08
1.0
21-ID-D
APS
1.08
SYNCHROTRON
APS BEAMLINE 21-ID-D
39019.523
DNA polymerase IV
2.7.7.7
1
man
polymer
Modified DNA Template
5224.510
DNA (5'-D(*CP*AP*CP*(HN1)P*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3')
1
syn
polymer
DNA Primer
4096.670
DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3')
1
syn
polymer
507.181
2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE
1
syn
non-polymer
40.078
CALCIUM ION
3
syn
non-polymer
18.015
water
181
nat
water
Pol IV
no
no
MIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEV
YQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKP
NGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTR
VRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQ
KILEEDERKIRRIGVRFSKFI
MIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEV
YQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKP
NGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTR
VRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQ
KILEEDERKIRRIGVRFSKFI
A
polypeptide(L)
no
yes
(DC)(DA)(DC)(HN1)(DG)(DA)(DA)(DT)(DC)(DC)(DT)(DT)(DC)(DC)(DC)(DC)(DC)
CACXGAATCCTTCCCCC
B
polydeoxyribonucleotide
no
no
(DG)(DG)(DG)(DG)(DG)(DA)(DA)(DG)(DG)(DA)(DT)(DT)(DC)
GGGGGAAGGATTC
C
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ATCC 35092 / DSM 1617 / JCM 11322 / P2
sample
dbh, dpo4, SSO2448
273057
Sulfolobus solfataricus P2
562
Escherichia coli
1
2.68
54.12
VAPOR DIFFUSION
7.4
50 mM Tris-HCl (pH 7.4 at 25 C) buffer, 12 20% polyethylene glycol 3350 (w/v), 100 mM Ca(OAc)2, and 2.5% glycerol (v/v). , VAPOR DIFFUSION, temperature 298K
298
-27.301
1
19
B
406
C
513
1.462
B_DG406:DC513_C
1
-9.515
-0.509
-0.732
-0.036
-6.317
1
20
B
407
C
512
-0.380
B_DA407:DT512_C
2
-2.052
0.014
-0.266
-0.228
-0.952
1
20
B
408
C
511
1.708
B_DA408:DT511_C
3
-7.969
0.022
0.066
-0.022
8.760
1
20
B
409
C
510
4.545
B_DT409:DA510_C
4
-8.674
-0.257
0.158
0.060
4.657
1
19
B
410
C
509
3.465
B_DC410:DG509_C
5
-8.705
0.034
-0.007
0.066
-5.122
1
19
B
411
C
508
0.663
B_DC411:DG508_C
6
-7.490
0.038
0.039
0.074
-2.778
1
20
B
412
C
507
7.737
B_DT412:DA507_C
7
-5.549
-0.332
0.075
-0.165
-2.571
1
20
B
413
C
506
-1.687
B_DT413:DA506_C
8
-10.632
-0.209
-0.111
-0.019
-3.365
1
19
B
414
C
505
-1.183
B_DC414:DG505_C
9
-5.981
-0.176
-0.125
-0.133
-6.048
1
19
B
415
C
504
2.878
B_DC415:DG504_C
10
-7.100
0.096
0.052
-0.083
-2.807
1
19
B
416
C
503
-0.556
B_DC416:DG503_C
11
-4.920
0.344
0.087
0.138
-0.683
1
19
B
417
C
502
3.064
B_DC417:DG502_C
12
-2.171
0.065
-0.285
-0.112
0.569
1
19
B
418
C
501
4.101
B_DC418:DG501_C
13
-2.803
0.382
-0.005
-0.107
2.752
28.592
B
B
406
407
7.979
C
C
513
512
2.874
3.914
0.271
-0.160
BB_DG406DA407:DT512DC513_CC
1
-4.389
8.949
27.993
-1.096
-1.415
3.263
35.551
B
B
407
408
4.548
C
C
512
511
3.251
2.772
-0.600
-0.160
BB_DA407DA408:DT511DT512_CC
2
-2.451
4.021
35.364
-0.666
0.626
2.932
25.524
B
B
408
409
7.176
C
C
511
510
3.070
3.159
0.150
-0.770
BB_DA408DT409:DA510DT511_CC
3
-2.044
4.642
25.250
-2.575
-0.877
3.397
38.497
B
B
409
410
-3.117
C
C
510
509
3.383
-2.054
0.393
-0.213
BB_DT409DC410:DG509DA510_CC
4
0.866
-1.314
38.434
-0.059
-0.485
3.375
35.493
B
B
410
411
8.078
C
C
509
508
3.509
4.910
-0.512
-0.739
BB_DC410DC411:DG508DG509_CC
5
0.239
-0.393
35.162
-1.971
0.877
3.149
31.912
B
B
411
412
13.535
C
C
508
507
3.261
7.378
0.060
-0.125
BB_DC411DT412:DA507DG508_CC
6
-0.151
0.276
31.069
-1.558
-0.136
3.247
33.820
B
B
412
413
4.498
C
C
507
506
3.281
2.614
-0.029
-0.314
BB_DT412DT413:DA506DA507_CC
7
0.654
-1.126
33.715
-0.961
0.156
3.201
32.180
B
B
413
414
4.841
C
C
506
505
3.250
2.680
0.481
-0.485
BB_DT413DC414:DG505DA506_CC
8
0.068
-0.122
32.071
-1.348
-0.856
2.962
30.901
B
B
414
415
19.061
C
C
505
504
3.371
9.982
0.116
-0.750
BB_DC414DC415:DG504DG505_CC
9
0.340
-0.650
29.279
-3.335
-0.152
3.081
35.723
B
B
415
416
13.550
C
C
504
503
3.251
8.241
-0.474
-0.449
BB_DC415DC416:DG503DG504_CC
10
-1.162
1.910
34.771
-1.901
0.608
3.491
31.330
B
B
416
417
6.733
C
C
503
502
3.327
3.603
1.349
-0.180
BB_DC416DC417:DG502DG503_CC
11
6.558
-12.257
30.445
-1.051
-1.189
3.321
33.024
B
B
417
418
10.956
C
C
502
501
3.335
6.189
-0.491
0.105
BB_DC417DC418:DG501DG502_CC
12
-1.927
3.410
32.398
-0.894
0.529
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
1
0
2012-02-15
1
1
2013-01-09
1
2
2024-02-28
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq.db_align_beg
_struct_ref_seq.db_align_end
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2011-07-27
REL
REL
DGT
2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE
CA
CALCIUM ION
HOH
water
Synthetic construct
sample
Synthetic construct
sample
DGT
600
4
DGT
DGT
600
A
CA
2001
5
CA
CA
2001
A
CA
2002
5
CA
CA
2002
A
CA
2003
5
CA
CA
2003
A
HOH
2001
6
HOH
HOH
2004
A
HOH
2005
6
HOH
HOH
2005
A
HOH
2006
6
HOH
HOH
2006
A
HOH
2010
6
HOH
HOH
2010
A
HOH
2011
6
HOH
HOH
2011
A
HOH
2012
6
HOH
HOH
2012
A
HOH
2013
6
HOH
HOH
2013
A
HOH
2014
6
HOH
HOH
2014
A
HOH
2015
6
HOH
HOH
2015
A
HOH
2016
6
HOH
HOH
2016
A
HOH
2017
6
HOH
HOH
2017
A
HOH
2018
6
HOH
HOH
2018
A
HOH
2019
6
HOH
HOH
2019
A
HOH
2020
6
HOH
HOH
2020
A
HOH
2022
6
HOH
HOH
2022
A
HOH
2023
6
HOH
HOH
2023
A
HOH
2025
6
HOH
HOH
2025
A
HOH
2026
6
HOH
HOH
2026
A
HOH
2027
6
HOH
HOH
2027
A
HOH
2028
6
HOH
HOH
2028
A
HOH
2030
6
HOH
HOH
2030
A
HOH
2031
6
HOH
HOH
2031
A
HOH
2032
6
HOH
HOH
2032
A
HOH
2033
6
HOH
HOH
2033
A
HOH
2034
6
HOH
HOH
2034
A
HOH
2035
6
HOH
HOH
2035
A
HOH
2036
6
HOH
HOH
2036
A
HOH
2037
6
HOH
HOH
2037
A
HOH
2038
6
HOH
HOH
2038
A
HOH
2039
6
HOH
HOH
2039
A
HOH
2040
6
HOH
HOH
2040
A
HOH
2042
6
HOH
HOH
2042
A
HOH
2043
6
HOH
HOH
2043
A
HOH
2054
6
HOH
HOH
2054
A
HOH
2055
6
HOH
HOH
2055
A
HOH
2056
6
HOH
HOH
2056
A
HOH
2057
6
HOH
HOH
2057
A
HOH
2058
6
HOH
HOH
2058
A
HOH
2059
6
HOH
HOH
2059
A
HOH
2060
6
HOH
HOH
2060
A
HOH
2061
6
HOH
HOH
2061
A
HOH
2062
6
HOH
HOH
2062
A
HOH
2063
6
HOH
HOH
2063
A
HOH
2064
6
HOH
HOH
2064
A
HOH
2065
6
HOH
HOH
2065
A
HOH
2066
6
HOH
HOH
2066
A
HOH
2067
6
HOH
HOH
2067
A
HOH
2068
6
HOH
HOH
2068
A
HOH
2069
6
HOH
HOH
2069
A
HOH
2070
6
HOH
HOH
2070
A
HOH
2071
6
HOH
HOH
2071
A
HOH
2072
6
HOH
HOH
2072
A
HOH
2073
6
HOH
HOH
2073
A
HOH
2074
6
HOH
HOH
2074
A
HOH
2075
6
HOH
HOH
2075
A
HOH
2076
6
HOH
HOH
2076
A
HOH
2079
6
HOH
HOH
2079
A
HOH
2080
6
HOH
HOH
2080
A
HOH
2081
6
HOH
HOH
2081
A
HOH
2082
6
HOH
HOH
2082
A
HOH
2083
6
HOH
HOH
2083
A
HOH
2085
6
HOH
HOH
2085
A
HOH
2086
6
HOH
HOH
2086
A
HOH
2090
6
HOH
HOH
2090
A
HOH
2091
6
HOH
HOH
2091
A
HOH
2099
6
HOH
HOH
2099
A
HOH
2100
6
HOH
HOH
2100
A
HOH
2102
6
HOH
HOH
2102
A
HOH
2103
6
HOH
HOH
2103
A
HOH
2104
6
HOH
HOH
2104
A
HOH
2107
6
HOH
HOH
2107
A
HOH
2108
6
HOH
HOH
2108
A
HOH
2109
6
HOH
HOH
2109
A
HOH
2110
6
HOH
HOH
2110
A
HOH
2111
6
HOH
HOH
2111
A
HOH
2112
6
HOH
HOH
2112
A
HOH
2113
6
HOH
HOH
2113
A
HOH
2114
6
HOH
HOH
2114
A
HOH
2115
6
HOH
HOH
2115
A
HOH
2116
6
HOH
HOH
2116
A
HOH
2117
6
HOH
HOH
2117
A
HOH
2118
6
HOH
HOH
2118
A
HOH
2119
6
HOH
HOH
2119
A
HOH
2121
6
HOH
HOH
2121
A
HOH
2122
6
HOH
HOH
2122
A
HOH
2123
6
HOH
HOH
2123
A
HOH
2124
6
HOH
HOH
2124
A
HOH
2125
6
HOH
HOH
2125
A
HOH
2126
6
HOH
HOH
2126
A
HOH
2127
6
HOH
HOH
2127
A
HOH
2128
6
HOH
HOH
2128
A
HOH
2129
6
HOH
HOH
2129
A
HOH
2130
6
HOH
HOH
2130
A
HOH
2131
6
HOH
HOH
2131
A
HOH
2132
6
HOH
HOH
2132
A
HOH
2133
6
HOH
HOH
2133
A
HOH
2134
6
HOH
HOH
2134
A
HOH
2135
6
HOH
HOH
2135
A
HOH
2136
6
HOH
HOH
2136
A
HOH
2137
6
HOH
HOH
2137
A
HOH
2138
6
HOH
HOH
2138
A
HOH
2139
6
HOH
HOH
2139
A
HOH
2140
6
HOH
HOH
2140
A
HOH
2141
6
HOH
HOH
2141
A
HOH
2142
6
HOH
HOH
2142
A
HOH
2144
6
HOH
HOH
2144
A
HOH
2145
6
HOH
HOH
2145
A
HOH
2146
6
HOH
HOH
2146
A
HOH
2147
6
HOH
HOH
2147
A
HOH
2148
6
HOH
HOH
2148
A
HOH
2149
6
HOH
HOH
2149
A
HOH
2150
6
HOH
HOH
2150
A
HOH
2151
6
HOH
HOH
2151
A
HOH
2153
6
HOH
HOH
2153
A
HOH
2158
6
HOH
HOH
2158
A
HOH
2159
6
HOH
HOH
2159
A
HOH
2160
6
HOH
HOH
2160
A
HOH
2161
6
HOH
HOH
2161
A
HOH
2162
6
HOH
HOH
2162
A
HOH
2163
6
HOH
HOH
2163
A
HOH
2164
6
HOH
HOH
2164
A
HOH
2165
6
HOH
HOH
2165
A
HOH
2166
6
HOH
HOH
2166
A
HOH
2167
6
HOH
HOH
2167
A
HOH
2168
6
HOH
HOH
2168
A
HOH
2169
6
HOH
HOH
2169
A
HOH
2170
6
HOH
HOH
2170
A
HOH
2173
6
HOH
HOH
2173
A
HOH
2175
6
HOH
HOH
2175
A
HOH
2177
6
HOH
HOH
2177
A
HOH
2180
6
HOH
HOH
2180
A
HOH
2181
6
HOH
HOH
2181
A
HOH
2002
6
HOH
HOH
2002
B
HOH
2003
6
HOH
HOH
2003
B
HOH
2004
6
HOH
HOH
2004
B
HOH
2007
6
HOH
HOH
2007
B
HOH
2008
6
HOH
HOH
2008
B
HOH
2021
6
HOH
HOH
2021
B
HOH
2044
6
HOH
HOH
2044
B
HOH
2045
6
HOH
HOH
2045
B
HOH
2047
6
HOH
HOH
2047
B
HOH
2048
6
HOH
HOH
2048
B
HOH
2049
6
HOH
HOH
2049
B
HOH
2051
6
HOH
HOH
2051
B
HOH
2052
6
HOH
HOH
2052
B
HOH
2053
6
HOH
HOH
2053
B
HOH
2077
6
HOH
HOH
2077
B
HOH
2078
6
HOH
HOH
2078
B
HOH
2084
6
HOH
HOH
2084
B
HOH
2088
6
HOH
HOH
2088
B
HOH
2089
6
HOH
HOH
2089
B
HOH
2092
6
HOH
HOH
2092
B
HOH
2093
6
HOH
HOH
2093
B
HOH
2094
6
HOH
HOH
2094
B
HOH
2105
6
HOH
HOH
2105
B
HOH
2106
6
HOH
HOH
2106
B
HOH
2120
6
HOH
HOH
2120
B
HOH
2143
6
HOH
HOH
2143
B
HOH
2154
6
HOH
HOH
2154
B
HOH
2156
6
HOH
HOH
2156
B
HOH
2157
6
HOH
HOH
2157
B
HOH
2171
6
HOH
HOH
2171
B
HOH
2174
6
HOH
HOH
2174
B
HOH
2179
6
HOH
HOH
2179
B
HOH
2009
6
HOH
HOH
2009
C
HOH
2024
6
HOH
HOH
2024
C
HOH
2029
6
HOH
HOH
2029
C
HOH
2041
6
HOH
HOH
2041
C
HOH
2046
6
HOH
HOH
2046
C
HOH
2050
6
HOH
HOH
2050
C
HOH
2087
6
HOH
HOH
2087
C
HOH
2095
6
HOH
HOH
2095
C
HOH
2096
6
HOH
HOH
2096
C
HOH
2097
6
HOH
HOH
2097
C
HOH
2098
6
HOH
HOH
2098
C
HOH
2101
6
HOH
HOH
2101
C
HOH
2152
6
HOH
HOH
2152
C
HOH
2155
6
HOH
HOH
2155
C
HOH
2172
6
HOH
HOH
2172
C
HOH
2176
6
HOH
HOH
2176
C
HOH
2178
6
HOH
HOH
2178
C
MET
1
n
1
MET
1
A
ILE
2
n
2
ILE
2
A
VAL
3
n
3
VAL
3
A
LEU
4
n
4
LEU
4
A
PHE
5
n
5
PHE
5
A
VAL
6
n
6
VAL
6
A
ASP
7
n
7
ASP
7
A
PHE
8
n
8
PHE
8
A
ASP
9
n
9
ASP
9
A
TYR
10
n
10
TYR
10
A
PHE
11
n
11
PHE
11
A
TYR
12
n
12
TYR
12
A
ALA
13
n
13
ALA
13
A
GLN
14
n
14
GLN
14
A
VAL
15
n
15
VAL
15
A
GLU
16
n
16
GLU
16
A
GLU
17
n
17
GLU
17
A
VAL
18
n
18
VAL
18
A
LEU
19
n
19
LEU
19
A
ASN
20
n
20
ASN
20
A
PRO
21
n
21
PRO
21
A
SER
22
n
22
SER
22
A
LEU
23
n
23
LEU
23
A
LYS
24
n
24
LYS
24
A
GLY
25
n
25
GLY
25
A
LYS
26
n
26
LYS
26
A
PRO
27
n
27
PRO
27
A
VAL
28
n
28
VAL
28
A
VAL
29
n
29
VAL
29
A
VAL
30
n
30
VAL
30
A
CYS
31
n
31
CYS
31
A
VAL
32
n
32
VAL
32
A
PHE
33
n
33
PHE
33
A
SER
34
n
34
SER
34
A
GLY
35
n
35
GLY
35
A
ARG
36
n
36
ARG
36
A
PHE
37
n
37
PHE
37
A
GLU
38
n
38
GLU
38
A
ASP
39
n
39
ASP
39
A
SER
40
n
40
SER
40
A
GLY
41
n
41
GLY
41
A
ALA
42
n
42
ALA
42
A
VAL
43
n
43
VAL
43
A
ALA
44
n
44
ALA
44
A
THR
45
n
45
THR
45
A
ALA
46
n
46
ALA
46
A
ASN
47
n
47
ASN
47
A
TYR
48
n
48
TYR
48
A
GLU
49
n
49
GLU
49
A
ALA
50
n
50
ALA
50
A
ARG
51
n
51
ARG
51
A
LYS
52
n
52
LYS
52
A
PHE
53
n
53
PHE
53
A
GLY
54
n
54
GLY
54
A
VAL
55
n
55
VAL
55
A
LYS
56
n
56
LYS
56
A
ALA
57
n
57
ALA
57
A
GLY
58
n
58
GLY
58
A
ILE
59
n
59
ILE
59
A
PRO
60
n
60
PRO
60
A
ILE
61
n
61
ILE
61
A
VAL
62
n
62
VAL
62
A
GLU
63
n
63
GLU
63
A
ALA
64
n
64
ALA
64
A
LYS
65
n
65
LYS
65
A
LYS
66
n
66
LYS
66
A
ILE
67
n
67
ILE
67
A
LEU
68
n
68
LEU
68
A
PRO
69
n
69
PRO
69
A
ASN
70
n
70
ASN
70
A
ALA
71
n
71
ALA
71
A
VAL
72
n
72
VAL
72
A
TYR
73
n
73
TYR
73
A
LEU
74
n
74
LEU
74
A
PRO
75
n
75
PRO
75
A
MET
76
n
76
MET
76
A
ARG
77
n
77
ARG
77
A
LYS
78
n
78
LYS
78
A
GLU
79
n
79
GLU
79
A
VAL
80
n
80
VAL
80
A
TYR
81
n
81
TYR
81
A
GLN
82
n
82
GLN
82
A
GLN
83
n
83
GLN
83
A
VAL
84
n
84
VAL
84
A
SER
85
n
85
SER
85
A
SER
86
n
86
SER
86
A
ARG
87
n
87
ARG
87
A
ILE
88
n
88
ILE
88
A
MET
89
n
89
MET
89
A
ASN
90
n
90
ASN
90
A
LEU
91
n
91
LEU
91
A
LEU
92
n
92
LEU
92
A
ARG
93
n
93
ARG
93
A
GLU
94
n
94
GLU
94
A
TYR
95
n
95
TYR
95
A
SER
96
n
96
SER
96
A
GLU
97
n
97
GLU
97
A
LYS
98
n
98
LYS
98
A
ILE
99
n
99
ILE
99
A
GLU
100
n
100
GLU
100
A
ILE
101
n
101
ILE
101
A
ALA
102
n
102
ALA
102
A
SER
103
n
103
SER
103
A
ILE
104
n
104
ILE
104
A
ASP
105
n
105
ASP
105
A
GLU
106
n
106
GLU
106
A
ALA
107
n
107
ALA
107
A
TYR
108
n
108
TYR
108
A
LEU
109
n
109
LEU
109
A
ASP
110
n
110
ASP
110
A
ILE
111
n
111
ILE
111
A
SER
112
n
112
SER
112
A
ASP
113
n
113
ASP
113
A
LYS
114
n
114
LYS
114
A
VAL
115
n
115
VAL
115
A
ARG
116
n
116
ARG
116
A
ASP
117
n
117
ASP
117
A
TYR
118
n
118
TYR
118
A
ARG
119
n
119
ARG
119
A
GLU
120
n
120
GLU
120
A
ALA
121
n
121
ALA
121
A
TYR
122
n
122
TYR
122
A
ASN
123
n
123
ASN
123
A
LEU
124
n
124
LEU
124
A
GLY
125
n
125
GLY
125
A
LEU
126
n
126
LEU
126
A
GLU
127
n
127
GLU
127
A
ILE
128
n
128
ILE
128
A
LYS
129
n
129
LYS
129
A
ASN
130
n
130
ASN
130
A
LYS
131
n
131
LYS
131
A
ILE
132
n
132
ILE
132
A
LEU
133
n
133
LEU
133
A
GLU
134
n
134
GLU
134
A
LYS
135
n
135
LYS
135
A
GLU
136
n
136
GLU
136
A
LYS
137
n
137
LYS
137
A
ILE
138
n
138
ILE
138
A
THR
139
n
139
THR
139
A
VAL
140
n
140
VAL
140
A
THR
141
n
141
THR
141
A
VAL
142
n
142
VAL
142
A
GLY
143
n
143
GLY
143
A
ILE
144
n
144
ILE
144
A
SER
145
n
145
SER
145
A
LYS
146
n
146
LYS
146
A
ASN
147
n
147
ASN
147
A
LYS
148
n
148
LYS
148
A
VAL
149
n
149
VAL
149
A
PHE
150
n
150
PHE
150
A
ALA
151
n
151
ALA
151
A
LYS
152
n
152
LYS
152
A
ILE
153
n
153
ILE
153
A
ALA
154
n
154
ALA
154
A
ALA
155
n
155
ALA
155
A
ASP
156
n
156
ASP
156
A
MET
157
n
157
MET
157
A
ALA
158
n
158
ALA
158
A
LYS
159
n
159
LYS
159
A
PRO
160
n
160
PRO
160
A
ASN
161
n
161
ASN
161
A
GLY
162
n
162
GLY
162
A
ILE
163
n
163
ILE
163
A
LYS
164
n
164
LYS
164
A
VAL
165
n
165
VAL
165
A
ILE
166
n
166
ILE
166
A
ASP
167
n
167
ASP
167
A
ASP
168
n
168
ASP
168
A
GLU
169
n
169
GLU
169
A
GLU
170
n
170
GLU
170
A
VAL
171
n
171
VAL
171
A
LYS
172
n
172
LYS
172
A
ARG
173
n
173
ARG
173
A
LEU
174
n
174
LEU
174
A
ILE
175
n
175
ILE
175
A
ARG
176
n
176
ARG
176
A
GLU
177
n
177
GLU
177
A
LEU
178
n
178
LEU
178
A
ASP
179
n
179
ASP
179
A
ILE
180
n
180
ILE
180
A
ALA
181
n
181
ALA
181
A
ASP
182
n
182
ASP
182
A
VAL
183
n
183
VAL
183
A
PRO
184
n
184
PRO
184
A
GLY
185
n
185
GLY
185
A
ILE
186
n
186
ILE
186
A
GLY
187
n
187
GLY
187
A
ASN
188
n
188
ASN
188
A
ILE
189
n
189
ILE
189
A
THR
190
n
190
THR
190
A
ALA
191
n
191
ALA
191
A
GLU
192
n
192
GLU
192
A
LYS
193
n
193
LYS
193
A
LEU
194
n
194
LEU
194
A
LYS
195
n
195
LYS
195
A
LYS
196
n
196
LYS
196
A
LEU
197
n
197
LEU
197
A
GLY
198
n
198
GLY
198
A
ILE
199
n
199
ILE
199
A
ASN
200
n
200
ASN
200
A
LYS
201
n
201
LYS
201
A
LEU
202
n
202
LEU
202
A
VAL
203
n
203
VAL
203
A
ASP
204
n
204
ASP
204
A
THR
205
n
205
THR
205
A
LEU
206
n
206
LEU
206
A
SER
207
n
207
SER
207
A
ILE
208
n
208
ILE
208
A
GLU
209
n
209
GLU
209
A
PHE
210
n
210
PHE
210
A
ASP
211
n
211
ASP
211
A
LYS
212
n
212
LYS
212
A
LEU
213
n
213
LEU
213
A
LYS
214
n
214
LYS
214
A
GLY
215
n
215
GLY
215
A
MET
216
n
216
MET
216
A
ILE
217
n
217
ILE
217
A
GLY
218
n
218
GLY
218
A
GLU
219
n
219
GLU
219
A
ALA
220
n
220
ALA
220
A
LYS
221
n
221
LYS
221
A
ALA
222
n
222
ALA
222
A
LYS
223
n
223
LYS
223
A
TYR
224
n
224
TYR
224
A
LEU
225
n
225
LEU
225
A
ILE
226
n
226
ILE
226
A
SER
227
n
227
SER
227
A
LEU
228
n
228
LEU
228
A
ALA
229
n
229
ALA
229
A
ARG
230
n
230
ARG
230
A
ASP
231
n
231
ASP
231
A
GLU
232
n
232
GLU
232
A
TYR
233
n
233
TYR
233
A
ASN
234
n
234
ASN
234
A
GLU
235
n
235
GLU
235
A
PRO
236
n
236
PRO
236
A
ILE
237
n
237
ILE
237
A
ARG
238
n
238
ARG
238
A
THR
239
n
239
THR
239
A
ARG
240
n
240
ARG
240
A
VAL
241
n
241
VAL
241
A
ARG
242
n
242
ARG
242
A
LYS
243
n
243
LYS
243
A
SER
244
n
244
SER
244
A
ILE
245
n
245
ILE
245
A
GLY
246
n
246
GLY
246
A
ARG
247
n
247
ARG
247
A
ILE
248
n
248
ILE
248
A
VAL
249
n
249
VAL
249
A
THR
250
n
250
THR
250
A
MET
251
n
251
MET
251
A
LYS
252
n
252
LYS
252
A
ARG
253
n
253
ARG
253
A
ASN
254
n
254
ASN
254
A
SER
255
n
255
SER
255
A
ARG
256
n
256
ARG
256
A
ASN
257
n
257
ASN
257
A
LEU
258
n
258
LEU
258
A
GLU
259
n
259
GLU
259
A
GLU
260
n
260
GLU
260
A
ILE
261
n
261
ILE
261
A
LYS
262
n
262
LYS
262
A
PRO
263
n
263
PRO
263
A
TYR
264
n
264
TYR
264
A
LEU
265
n
265
LEU
265
A
PHE
266
n
266
PHE
266
A
ARG
267
n
267
ARG
267
A
ALA
268
n
268
ALA
268
A
ILE
269
n
269
ILE
269
A
GLU
270
n
270
GLU
270
A
GLU
271
n
271
GLU
271
A
SER
272
n
272
SER
272
A
TYR
273
n
273
TYR
273
A
TYR
274
n
274
TYR
274
A
LYS
275
n
275
LYS
275
A
LEU
276
n
276
LEU
276
A
ASP
277
n
277
ASP
277
A
LYS
278
n
278
LYS
278
A
ARG
279
n
279
ARG
279
A
ILE
280
n
280
ILE
280
A
PRO
281
n
281
PRO
281
A
LYS
282
n
282
LYS
282
A
ALA
283
n
283
ALA
283
A
ILE
284
n
284
ILE
284
A
HIS
285
n
285
HIS
285
A
VAL
286
n
286
VAL
286
A
VAL
287
n
287
VAL
287
A
ALA
288
n
288
ALA
288
A
VAL
289
n
289
VAL
289
A
THR
290
n
290
THR
290
A
GLU
291
n
291
GLU
291
A
ASP
292
n
292
ASP
292
A
LEU
293
n
293
LEU
293
A
ASP
294
n
294
ASP
294
A
ILE
295
n
295
ILE
295
A
VAL
296
n
296
VAL
296
A
SER
297
n
297
SER
297
A
ARG
298
n
298
ARG
298
A
GLY
299
n
299
GLY
299
A
ARG
300
n
300
ARG
300
A
THR
301
n
301
THR
301
A
PHE
302
n
302
PHE
302
A
PRO
303
n
303
PRO
303
A
HIS
304
n
304
HIS
304
A
GLY
305
n
305
GLY
305
A
ILE
306
n
306
ILE
306
A
SER
307
n
307
SER
307
A
LYS
308
n
308
LYS
308
A
GLU
309
n
309
GLU
309
A
THR
310
n
310
THR
310
A
ALA
311
n
311
ALA
311
A
TYR
312
n
312
TYR
312
A
SER
313
n
313
SER
313
A
GLU
314
n
314
GLU
314
A
SER
315
n
315
SER
315
A
VAL
316
n
316
VAL
316
A
LYS
317
n
317
LYS
317
A
LEU
318
n
318
LEU
318
A
LEU
319
n
319
LEU
319
A
GLN
320
n
320
GLN
320
A
LYS
321
n
321
LYS
321
A
ILE
322
n
322
ILE
322
A
LEU
323
n
323
LEU
323
A
GLU
324
n
324
GLU
324
A
GLU
325
n
325
GLU
325
A
ASP
326
n
326
ASP
326
A
GLU
327
n
327
GLU
327
A
ARG
328
n
328
ARG
328
A
LYS
329
n
329
LYS
329
A
ILE
330
n
330
ILE
330
A
ARG
331
n
331
ARG
331
A
ARG
332
n
332
ARG
332
A
ILE
333
n
333
ILE
333
A
GLY
334
n
334
GLY
334
A
VAL
335
n
335
VAL
335
A
ARG
336
n
336
ARG
336
A
PHE
337
n
337
PHE
337
A
SER
338
n
338
SER
338
A
LYS
339
n
339
LYS
339
A
PHE
340
n
340
PHE
340
A
ILE
341
n
341
ILE
341
A
DC
402
n
1
DC
402
B
DA
403
n
2
DA
403
B
DC
404
n
3
DC
404
B
HN1
405
n
4
HN1
405
B
DG
406
n
5
DG
406
B
DA
407
n
6
DA
407
B
DA
408
n
7
DA
408
B
DT
409
n
8
DT
409
B
DC
410
n
9
DC
410
B
DC
411
n
10
DC
411
B
DT
412
n
11
DT
412
B
DT
413
n
12
DT
413
B
DC
414
n
13
DC
414
B
DC
415
n
14
DC
415
B
DC
416
n
15
DC
416
B
DC
417
n
16
DC
417
B
DC
418
n
17
DC
418
B
DG
501
n
1
DG
501
C
DG
502
n
2
DG
502
C
DG
503
n
3
DG
503
C
DG
504
n
4
DG
504
C
DG
505
n
5
DG
505
C
DA
506
n
6
DA
506
C
DA
507
n
7
DA
507
C
DG
508
n
8
DG
508
C
DG
509
n
9
DG
509
C
DA
510
n
10
DA
510
C
DT
511
n
11
DT
511
C
DT
512
n
12
DT
512
C
DC
513
n
13
DC
513
C
author_and_software_defined_assembly
PISA
3
trimeric
5600
-71
20130
A
ASP
7
A
OD1
ASP
7
1_555
A
CA
2001
E
CA
CA
1_555
A
PHE
8
A
O
PHE
8
1_555
76.9
A
ASP
7
A
OD1
ASP
7
1_555
A
CA
2001
E
CA
CA
1_555
A
ASP
105
A
OD2
ASP
105
1_555
103.5
A
PHE
8
A
O
PHE
8
1_555
A
CA
2001
E
CA
CA
1_555
A
ASP
105
A
OD2
ASP
105
1_555
85.8
A
ASP
7
A
OD1
ASP
7
1_555
A
CA
2001
E
CA
CA
1_555
A
DGT
600
D
O3A
DGT
1_555
142.8
A
PHE
8
A
O
PHE
8
1_555
A
CA
2001
E
CA
CA
1_555
A
DGT
600
D
O3A
DGT
1_555
130.9
A
ASP
105
A
OD2
ASP
105
1_555
A
CA
2001
E
CA
CA
1_555
A
DGT
600
D
O3A
DGT
1_555
102.9
A
ASP
7
A
OD1
ASP
7
1_555
A
CA
2001
E
CA
CA
1_555
A
DGT
600
D
O2B
DGT
1_555
148.7
A
PHE
8
A
O
PHE
8
1_555
A
CA
2001
E
CA
CA
1_555
A
DGT
600
D
O2B
DGT
1_555
80.4
A
ASP
105
A
OD2
ASP
105
1_555
A
CA
2001
E
CA
CA
1_555
A
DGT
600
D
O2B
DGT
1_555
96.0
A
DGT
600
D
O3A
DGT
1_555
A
CA
2001
E
CA
CA
1_555
A
DGT
600
D
O2B
DGT
1_555
50.9
A
ASP
7
A
OD1
ASP
7
1_555
A
CA
2001
E
CA
CA
1_555
A
DGT
600
D
O2G
DGT
1_555
94.7
A
PHE
8
A
O
PHE
8
1_555
A
CA
2001
E
CA
CA
1_555
A
DGT
600
D
O2G
DGT
1_555
67.3
A
ASP
105
A
OD2
ASP
105
1_555
A
CA
2001
E
CA
CA
1_555
A
DGT
600
D
O2G
DGT
1_555
143.2
A
DGT
600
D
O3A
DGT
1_555
A
CA
2001
E
CA
CA
1_555
A
DGT
600
D
O2G
DGT
1_555
79.2
A
DGT
600
D
O2B
DGT
1_555
A
CA
2001
E
CA
CA
1_555
A
DGT
600
D
O2G
DGT
1_555
56.3
A
ASP
7
A
OD1
ASP
7
1_555
A
CA
2001
E
CA
CA
1_555
A
HOH
2079
H
O
HOH
1_555
87.3
A
PHE
8
A
O
PHE
8
1_555
A
CA
2001
E
CA
CA
1_555
A
HOH
2079
H
O
HOH
1_555
144.4
A
ASP
105
A
OD2
ASP
105
1_555
A
CA
2001
E
CA
CA
1_555
A
HOH
2079
H
O
HOH
1_555
129.2
A
DGT
600
D
O3A
DGT
1_555
A
CA
2001
E
CA
CA
1_555
A
HOH
2079
H
O
HOH
1_555
55.6
A
DGT
600
D
O2B
DGT
1_555
A
CA
2001
E
CA
CA
1_555
A
HOH
2079
H
O
HOH
1_555
99.2
A
DGT
600
D
O2G
DGT
1_555
A
CA
2001
E
CA
CA
1_555
A
HOH
2079
H
O
HOH
1_555
82.8
A
ASP
7
A
OD1
ASP
7
1_555
A
CA
2001
E
CA
CA
1_555
A
HOH
2104
H
O
HOH
1_555
53.2
A
PHE
8
A
O
PHE
8
1_555
A
CA
2001
E
CA
CA
1_555
A
HOH
2104
H
O
HOH
1_555
80.7
A
ASP
105
A
OD2
ASP
105
1_555
A
CA
2001
E
CA
CA
1_555
A
HOH
2104
H
O
HOH
1_555
50.6
A
DGT
600
D
O3A
DGT
1_555
A
CA
2001
E
CA
CA
1_555
A
HOH
2104
H
O
HOH
1_555
141.0
A
DGT
600
D
O2B
DGT
1_555
A
CA
2001
E
CA
CA
1_555
A
HOH
2104
H
O
HOH
1_555
142.5
A
DGT
600
D
O2G
DGT
1_555
A
CA
2001
E
CA
CA
1_555
A
HOH
2104
H
O
HOH
1_555
139.7
A
HOH
2079
H
O
HOH
1_555
A
CA
2001
E
CA
CA
1_555
A
HOH
2104
H
O
HOH
1_555
114.8
A
ASP
7
A
OD2
ASP
7
1_555
A
CA
2002
F
CA
CA
1_555
A
ASP
105
A
OD1
ASP
105
1_555
130.8
A
ASP
7
A
OD2
ASP
7
1_555
A
CA
2002
F
CA
CA
1_555
A
ASP
105
A
OD2
ASP
105
1_555
101.1
A
ASP
105
A
OD1
ASP
105
1_555
A
CA
2002
F
CA
CA
1_555
A
ASP
105
A
OD2
ASP
105
1_555
41.5
A
ASP
7
A
OD2
ASP
7
1_555
A
CA
2002
F
CA
CA
1_555
A
GLU
106
A
OE1
GLU
106
1_555
97.9
A
ASP
105
A
OD1
ASP
105
1_555
A
CA
2002
F
CA
CA
1_555
A
GLU
106
A
OE1
GLU
106
1_555
103.2
A
ASP
105
A
OD2
ASP
105
1_555
A
CA
2002
F
CA
CA
1_555
A
GLU
106
A
OE1
GLU
106
1_555
143.1
A
ASP
7
A
OD2
ASP
7
1_555
A
CA
2002
F
CA
CA
1_555
A
DGT
600
D
O2A
DGT
1_555
108.3
A
ASP
105
A
OD1
ASP
105
1_555
A
CA
2002
F
CA
CA
1_555
A
DGT
600
D
O2A
DGT
1_555
105.0
A
ASP
105
A
OD2
ASP
105
1_555
A
CA
2002
F
CA
CA
1_555
A
DGT
600
D
O2A
DGT
1_555
93.2
A
GLU
106
A
OE1
GLU
106
1_555
A
CA
2002
F
CA
CA
1_555
A
DGT
600
D
O2A
DGT
1_555
110.4
A
ASP
7
A
OD2
ASP
7
1_555
A
CA
2002
F
CA
CA
1_555
A
HOH
2038
H
O
HOH
1_555
72.2
A
ASP
105
A
OD1
ASP
105
1_555
A
CA
2002
F
CA
CA
1_555
A
HOH
2038
H
O
HOH
1_555
156.8
A
ASP
105
A
OD2
ASP
105
1_555
A
CA
2002
F
CA
CA
1_555
A
HOH
2038
H
O
HOH
1_555
143.8
A
GLU
106
A
OE1
GLU
106
1_555
A
CA
2002
F
CA
CA
1_555
A
HOH
2038
H
O
HOH
1_555
72.4
A
DGT
600
D
O2A
DGT
1_555
A
CA
2002
F
CA
CA
1_555
A
HOH
2038
H
O
HOH
1_555
57.9
A
ASP
7
A
OD2
ASP
7
1_555
A
CA
2002
F
CA
CA
1_555
A
HOH
2080
H
O
HOH
1_555
170.6
A
ASP
105
A
OD1
ASP
105
1_555
A
CA
2002
F
CA
CA
1_555
A
HOH
2080
H
O
HOH
1_555
55.3
A
ASP
105
A
OD2
ASP
105
1_555
A
CA
2002
F
CA
CA
1_555
A
HOH
2080
H
O
HOH
1_555
87.8
A
GLU
106
A
OE1
GLU
106
1_555
A
CA
2002
F
CA
CA
1_555
A
HOH
2080
H
O
HOH
1_555
72.9
A
DGT
600
D
O2A
DGT
1_555
A
CA
2002
F
CA
CA
1_555
A
HOH
2080
H
O
HOH
1_555
74.0
A
HOH
2038
H
O
HOH
1_555
A
CA
2002
F
CA
CA
1_555
A
HOH
2080
H
O
HOH
1_555
102.4
A
ASP
7
A
OD2
ASP
7
1_555
A
CA
2002
F
CA
CA
1_555
A
HOH
2104
H
O
HOH
1_555
63.8
A
ASP
105
A
OD1
ASP
105
1_555
A
CA
2002
F
CA
CA
1_555
A
HOH
2104
H
O
HOH
1_555
67.2
A
ASP
105
A
OD2
ASP
105
1_555
A
CA
2002
F
CA
CA
1_555
A
HOH
2104
H
O
HOH
1_555
45.6
A
GLU
106
A
OE1
GLU
106
1_555
A
CA
2002
F
CA
CA
1_555
A
HOH
2104
H
O
HOH
1_555
121.4
A
DGT
600
D
O2A
DGT
1_555
A
CA
2002
F
CA
CA
1_555
A
HOH
2104
H
O
HOH
1_555
128.1
A
HOH
2038
H
O
HOH
1_555
A
CA
2002
F
CA
CA
1_555
A
HOH
2104
H
O
HOH
1_555
135.0
A
HOH
2080
H
O
HOH
1_555
A
CA
2002
F
CA
CA
1_555
A
HOH
2104
H
O
HOH
1_555
122.4
A
ALA
181
A
O
ALA
181
1_555
A
CA
2003
G
CA
CA
1_555
A
ILE
186
A
O
ILE
186
1_555
80.5
A
ALA
181
A
O
ALA
181
1_555
A
CA
2003
G
CA
CA
1_555
A
HOH
2040
H
O
HOH
1_555
95.6
A
ILE
186
A
O
ILE
186
1_555
A
CA
2003
G
CA
CA
1_555
A
HOH
2040
H
O
HOH
1_555
147.5
A
ALA
181
A
O
ALA
181
1_555
A
CA
2003
G
CA
CA
1_555
A
HOH
2042
H
O
HOH
1_555
72.6
A
ILE
186
A
O
ILE
186
1_555
A
CA
2003
G
CA
CA
1_555
A
HOH
2042
H
O
HOH
1_555
69.2
A
HOH
2040
H
O
HOH
1_555
A
CA
2003
G
CA
CA
1_555
A
HOH
2042
H
O
HOH
1_555
78.8
A
ALA
181
A
O
ALA
181
1_555
A
CA
2003
G
CA
CA
1_555
A
HOH
2173
H
O
HOH
1_555
91.1
A
ILE
186
A
O
ILE
186
1_555
A
CA
2003
G
CA
CA
1_555
A
HOH
2173
H
O
HOH
1_555
81.5
A
HOH
2040
H
O
HOH
1_555
A
CA
2003
G
CA
CA
1_555
A
HOH
2173
H
O
HOH
1_555
131.0
A
HOH
2042
H
O
HOH
1_555
A
CA
2003
G
CA
CA
1_555
A
HOH
2173
H
O
HOH
1_555
148.2
A
ALA
181
A
O
ALA
181
1_555
A
CA
2003
G
CA
CA
1_555
C
HOH
2041
J
O
HOH
1_555
158.4
A
ILE
186
A
O
ILE
186
1_555
A
CA
2003
G
CA
CA
1_555
C
HOH
2041
J
O
HOH
1_555
80.9
A
HOH
2040
H
O
HOH
1_555
A
CA
2003
G
CA
CA
1_555
C
HOH
2041
J
O
HOH
1_555
94.2
A
HOH
2042
H
O
HOH
1_555
A
CA
2003
G
CA
CA
1_555
C
HOH
2041
J
O
HOH
1_555
90.5
A
HOH
2173
H
O
HOH
1_555
A
CA
2003
G
CA
CA
1_555
C
HOH
2041
J
O
HOH
1_555
97.0
B
HN1
405
B
HN1
4
DG
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLU
100
A
N
GLU
100
A
O
TYR
108
A
O
TYR
108
A
O
ALA
107
A
O
ALA
107
A
N
VAL
6
A
N
VAL
6
A
N
PHE
5
A
N
PHE
5
A
O
GLY
143
A
O
GLY
143
A
N
ILE
144
A
N
ILE
144
A
O
LYS
164
A
O
LYS
164
A
O
ALA
42
A
O
ALA
42
A
N
VAL
32
A
N
VAL
32
A
N
CYS
31
A
N
CYS
31
A
O
LEU
74
A
O
LEU
74
A
N
ILE
245
A
N
ILE
245
A
O
PHE
337
A
O
PHE
337
A
O
ARG
331
A
O
ARG
331
A
N
VAL
289
A
N
VAL
289
A
N
VAL
286
A
N
VAL
286
A
O
ARG
298
A
O
ARG
298
1
A
TYR
10
24.01
47.63
1
A
ASN
20
-156.98
75.64
1
A
ARG
77
-119.46
67.76
1
A
SER
96
-177.76
134.53
1
A
ASP
105
-143.66
16.43
1
A
SER
145
-165.23
-165.25
1
A
ASN
234
-154.90
58.71
1
A
ARG
256
-146.14
-3.36
1
A
ASP
277
28.52
90.61
1
A
LYS
278
77.34
-18.83
1
A
ASP
292
-98.57
34.48
protein_rep.param
protein.top
dna-rna_hne.param
dna-rna_hne.top
dgtp.param
dgtp.top
ion.param
ion.top
water_rep.param
water.top
47.6
7.01
0.00
0.00
-6.06
0.00
-0.96
RESOLUTION-DEPENDENT WEIGHTING SCHEME USE OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED
0.257
0.008
0.217
0.217
2.35
26.27
1069
22417
21987
4.9
98.5
RANDOM
155693.72
0.000000
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
FLAT MODEL
41.2792
0.341934
0.37
0.31
50.00
0.35
0.28
2.35
26.27
181
3578
34
619
2744
0.007
1.3
20.9
1.20
1.49
1.50
2.46
2.00
2.34
2.00
3.68
2.50
0.346
0.026
0.296
2.50
180
3336
6
5.1
95.9
50.1
2.35
30
3T5H
22417
0
0
1
99.6
data collection
MAR345dtb
refinement
CNS
data reduction
HKL-2000
data scaling
HKL-2000
phasing
CNS
Ternary complex of HNE Adduct modified DNA (5'-CXG-3' vs 13-mer) with Dpo4 and incoming dDGT
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
5
N
N
6
N
N
6
N
N
6
N
N
A
TYR
10
A
TYR
10
HELX_P
A
ASN
20
A
ASN
20
1
1
11
A
PRO
21
A
PRO
21
HELX_P
A
LYS
24
A
LYS
24
5
2
4
A
ASN
47
A
ASN
47
HELX_P
A
LYS
52
A
LYS
52
1
3
6
A
PRO
60
A
PRO
60
HELX_P
A
LEU
68
A
LEU
68
1
4
9
A
ARG
77
A
ARG
77
HELX_P
A
GLU
94
A
GLU
94
1
5
18
A
ASP
117
A
ASP
117
HELX_P
A
LYS
137
A
LYS
137
1
6
21
A
ASN
147
A
ASN
147
HELX_P
A
LYS
159
A
LYS
159
1
7
13
A
ASP
167
A
ASP
167
HELX_P
A
LEU
178
A
LEU
178
1
8
12
A
ASP
179
A
ASP
179
HELX_P
A
VAL
183
A
VAL
183
5
9
5
A
GLY
187
A
GLY
187
HELX_P
A
LEU
197
A
LEU
197
1
10
11
A
LYS
201
A
LYS
201
HELX_P
A
SER
207
A
SER
207
5
11
7
A
GLU
209
A
GLU
209
HELX_P
A
GLY
218
A
GLY
218
1
12
10
A
GLY
218
A
GLY
218
HELX_P
A
ARG
230
A
ARG
230
1
13
13
A
ASN
257
A
ASN
257
HELX_P
A
ASP
277
A
ASP
277
1
14
21
A
SER
307
A
SER
307
HELX_P
A
ASP
326
A
ASP
326
1
15
20
covale
1.602
both
B
DC
404
B
O3'
DC
3
1_555
B
HN1
405
B
P
HN1
4
1_555
covale
1.597
both
B
HN1
405
B
O3'
HN1
4
1_555
B
DG
406
B
P
DG
5
1_555
metalc
2.485
A
ASP
7
A
OD1
ASP
7
1_555
A
CA
2001
E
CA
CA
1_555
metalc
2.938
A
ASP
7
A
OD2
ASP
7
1_555
A
CA
2002
F
CA
CA
1_555
metalc
2.484
A
PHE
8
A
O
PHE
8
1_555
A
CA
2001
E
CA
CA
1_555
metalc
2.520
A
ASP
105
A
OD2
ASP
105
1_555
A
CA
2001
E
CA
CA
1_555
metalc
2.997
A
ASP
105
A
OD1
ASP
105
1_555
A
CA
2002
F
CA
CA
1_555
metalc
3.173
A
ASP
105
A
OD2
ASP
105
1_555
A
CA
2002
F
CA
CA
1_555
metalc
2.852
A
GLU
106
A
OE1
GLU
106
1_555
A
CA
2002
F
CA
CA
1_555
metalc
2.591
A
ALA
181
A
O
ALA
181
1_555
A
CA
2003
G
CA
CA
1_555
metalc
2.776
A
ILE
186
A
O
ILE
186
1_555
A
CA
2003
G
CA
CA
1_555
metalc
2.719
A
DGT
600
D
O3A
DGT
1_555
A
CA
2001
E
CA
CA
1_555
metalc
2.733
A
DGT
600
D
O2B
DGT
1_555
A
CA
2001
E
CA
CA
1_555
metalc
2.954
A
DGT
600
D
O2G
DGT
1_555
A
CA
2001
E
CA
CA
1_555
metalc
2.788
A
DGT
600
D
O2A
DGT
1_555
A
CA
2002
F
CA
CA
1_555
metalc
3.052
A
CA
2001
E
CA
CA
1_555
A
HOH
2079
H
O
HOH
1_555
metalc
2.986
A
CA
2001
E
CA
CA
1_555
A
HOH
2104
H
O
HOH
1_555
metalc
2.840
A
CA
2002
F
CA
CA
1_555
A
HOH
2038
H
O
HOH
1_555
metalc
3.068
A
CA
2002
F
CA
CA
1_555
A
HOH
2080
H
O
HOH
1_555
metalc
2.980
A
CA
2002
F
CA
CA
1_555
A
HOH
2104
H
O
HOH
1_555
metalc
2.699
A
CA
2003
G
CA
CA
1_555
A
HOH
2040
H
O
HOH
1_555
metalc
2.723
A
CA
2003
G
CA
CA
1_555
A
HOH
2042
H
O
HOH
1_555
metalc
2.974
A
CA
2003
G
CA
CA
1_555
A
HOH
2173
H
O
HOH
1_555
metalc
2.662
A
CA
2003
G
CA
CA
1_555
C
HOH
2041
J
O
HOH
1_555
hydrog
WATSON-CRICK
B
DG
406
B
N1
DG
5
1_555
C
DC
513
C
N3
DC
13
1_555
hydrog
WATSON-CRICK
B
DG
406
B
N2
DG
5
1_555
C
DC
513
C
O2
DC
13
1_555
hydrog
WATSON-CRICK
B
DG
406
B
O6
DG
5
1_555
C
DC
513
C
N4
DC
13
1_555
hydrog
WATSON-CRICK
B
DA
407
B
N1
DA
6
1_555
C
DT
512
C
N3
DT
12
1_555
hydrog
WATSON-CRICK
B
DA
407
B
N6
DA
6
1_555
C
DT
512
C
O4
DT
12
1_555
hydrog
WATSON-CRICK
B
DA
408
B
N1
DA
7
1_555
C
DT
511
C
N3
DT
11
1_555
hydrog
WATSON-CRICK
B
DA
408
B
N6
DA
7
1_555
C
DT
511
C
O4
DT
11
1_555
hydrog
WATSON-CRICK
B
DT
409
B
N3
DT
8
1_555
C
DA
510
C
N1
DA
10
1_555
hydrog
WATSON-CRICK
B
DT
409
B
O4
DT
8
1_555
C
DA
510
C
N6
DA
10
1_555
hydrog
WATSON-CRICK
B
DC
410
B
N3
DC
9
1_555
C
DG
509
C
N1
DG
9
1_555
hydrog
WATSON-CRICK
B
DC
410
B
N4
DC
9
1_555
C
DG
509
C
O6
DG
9
1_555
hydrog
WATSON-CRICK
B
DC
410
B
O2
DC
9
1_555
C
DG
509
C
N2
DG
9
1_555
hydrog
WATSON-CRICK
B
DC
411
B
N3
DC
10
1_555
C
DG
508
C
N1
DG
8
1_555
hydrog
WATSON-CRICK
B
DC
411
B
N4
DC
10
1_555
C
DG
508
C
O6
DG
8
1_555
hydrog
WATSON-CRICK
B
DC
411
B
O2
DC
10
1_555
C
DG
508
C
N2
DG
8
1_555
hydrog
WATSON-CRICK
B
DT
412
B
N3
DT
11
1_555
C
DA
507
C
N1
DA
7
1_555
hydrog
WATSON-CRICK
B
DT
412
B
O4
DT
11
1_555
C
DA
507
C
N6
DA
7
1_555
hydrog
WATSON-CRICK
B
DT
413
B
N3
DT
12
1_555
C
DA
506
C
N1
DA
6
1_555
hydrog
WATSON-CRICK
B
DT
413
B
O4
DT
12
1_555
C
DA
506
C
N6
DA
6
1_555
hydrog
WATSON-CRICK
B
DC
414
B
N3
DC
13
1_555
C
DG
505
C
N1
DG
5
1_555
hydrog
WATSON-CRICK
B
DC
414
B
N4
DC
13
1_555
C
DG
505
C
O6
DG
5
1_555
hydrog
WATSON-CRICK
B
DC
414
B
O2
DC
13
1_555
C
DG
505
C
N2
DG
5
1_555
hydrog
WATSON-CRICK
B
DC
415
B
N3
DC
14
1_555
C
DG
504
C
N1
DG
4
1_555
hydrog
WATSON-CRICK
B
DC
415
B
N4
DC
14
1_555
C
DG
504
C
O6
DG
4
1_555
hydrog
WATSON-CRICK
B
DC
415
B
O2
DC
14
1_555
C
DG
504
C
N2
DG
4
1_555
hydrog
WATSON-CRICK
B
DC
416
B
N3
DC
15
1_555
C
DG
503
C
N1
DG
3
1_555
hydrog
WATSON-CRICK
B
DC
416
B
N4
DC
15
1_555
C
DG
503
C
O6
DG
3
1_555
hydrog
WATSON-CRICK
B
DC
416
B
O2
DC
15
1_555
C
DG
503
C
N2
DG
3
1_555
hydrog
WATSON-CRICK
B
DC
417
B
N3
DC
16
1_555
C
DG
502
C
N1
DG
2
1_555
hydrog
WATSON-CRICK
B
DC
417
B
N4
DC
16
1_555
C
DG
502
C
O6
DG
2
1_555
hydrog
WATSON-CRICK
B
DC
417
B
O2
DC
16
1_555
C
DG
502
C
N2
DG
2
1_555
hydrog
WATSON-CRICK
B
DC
418
B
N3
DC
17
1_555
C
DG
501
C
N1
DG
1
1_555
hydrog
WATSON-CRICK
B
DC
418
B
N4
DC
17
1_555
C
DG
501
C
O6
DG
1
1_555
hydrog
WATSON-CRICK
B
DC
418
B
O2
DC
17
1_555
C
DG
501
C
N2
DG
1
1_555
DNA/Transferase
Ternary complex of Dpo4-DNA-dGTP, DNA Polymerase, HNE, DNA-Transferase complex
A
LYS
159
A
LYS
159
1
A
PRO
160
A
PRO
160
0.11
DPO4_SULSO
UNP
1
1
Q97W02
MIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEV
YQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKP
NGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTR
VRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQ
KILEEDERKIRRIGVRFSKFI
3T5H
PDB
2
1
3T5H
CACGGAATCCTTCCCCC
3T5H
PDB
3
1
3T5H
GGGGGAAGGATTC
1
341
3T5H
1
341
Q97W02
A
1
1
341
402
418
3T5H
402
418
3T5H
B
2
1
17
501
513
3T5H
501
513
3T5H
C
3
1
13
5
3
4
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
99
A
ILE
99
A
SER
103
A
SER
103
A
GLU
106
A
GLU
106
A
ASP
110
A
ASP
110
A
VAL
3
A
VAL
3
A
PHE
8
A
PHE
8
A
VAL
140
A
VAL
140
A
SER
145
A
SER
145
A
ILE
163
A
ILE
163
A
VAL
165
A
VAL
165
A
GLY
41
A
GLY
41
A
ALA
46
A
ALA
46
A
VAL
28
A
VAL
28
A
PHE
33
A
PHE
33
A
VAL
72
A
VAL
72
A
PRO
75
A
PRO
75
A
SER
244
A
SER
244
A
SER
255
A
SER
255
A
ILE
330
A
ILE
330
A
PHE
340
A
PHE
340
A
PRO
281
A
PRO
281
A
THR
290
A
THR
290
A
ILE
295
A
ILE
295
A
THR
301
A
THR
301
BINDING SITE FOR RESIDUE DGT A 600
A
DGT
600
Software
22
BINDING SITE FOR RESIDUE CA A 2001
A
CA
2001
Software
7
BINDING SITE FOR RESIDUE CA A 2002
A
CA
2002
Software
8
BINDING SITE FOR RESIDUE CA A 2003
A
CA
2003
Software
6
A
PHE
8
A
PHE
8
22
1_555
A
ASP
9
A
ASP
9
22
1_555
A
TYR
10
A
TYR
10
22
1_555
A
PHE
11
A
PHE
11
22
1_555
A
TYR
12
A
TYR
12
22
1_555
A
ALA
44
A
ALA
44
22
1_555
A
THR
45
A
THR
45
22
1_555
A
TYR
48
A
TYR
48
22
1_555
A
ARG
51
A
ARG
51
22
1_555
A
ASP
105
A
ASP
105
22
1_555
A
LYS
159
A
LYS
159
22
1_555
A
CA
2001
E
CA
22
1_555
A
CA
2002
F
CA
22
1_555
A
HOH
2017
H
HOH
22
1_555
A
HOH
2020
H
HOH
22
1_555
A
HOH
2038
H
HOH
22
1_555
A
HOH
2039
H
HOH
22
1_555
A
HOH
2079
H
HOH
22
1_555
A
HOH
2081
H
HOH
22
1_555
A
HOH
2082
H
HOH
22
1_555
B
DC
404
B
DC
3
22
1_555
B
HN1
405
B
HN1
4
22
1_555
A
ASP
7
A
ASP
7
7
1_555
A
PHE
8
A
PHE
8
7
1_555
A
ASP
105
A
ASP
105
7
1_555
A
DGT
600
D
DGT
7
1_555
A
CA
2002
F
CA
7
1_555
A
HOH
2079
H
HOH
7
1_555
A
HOH
2104
H
HOH
7
1_555
A
ASP
7
A
ASP
7
8
1_555
A
ASP
105
A
ASP
105
8
1_555
A
GLU
106
A
GLU
106
8
1_555
A
DGT
600
D
DGT
8
1_555
A
CA
2001
E
CA
8
1_555
A
HOH
2038
H
HOH
8
1_555
A
HOH
2080
H
HOH
8
1_555
A
HOH
2104
H
HOH
8
1_555
A
ALA
181
A
ALA
181
6
1_555
A
ILE
186
A
ILE
186
6
1_555
A
HOH
2040
H
HOH
6
1_555
A
HOH
2042
H
HOH
6
1_555
A
HOH
2173
H
HOH
6
1_555
C
HOH
2041
J
HOH
6
1_555
18
P 21 21 2