HEADER DNA 01-AUG-11 3T86 TITLE D(GCATGCT) + CALCIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*GP*CP*AP*TP*GP*CP*T)-3'); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: DNA HEPTAMER SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS QUADRUPLEX, LOOP, DNA EXPDTA X-RAY DIFFRACTION AUTHOR C.J.CARDIN,Y.GAN REVDAT 4 28-FEB-24 3T86 1 REMARK LINK REVDAT 3 22-NOV-17 3T86 1 REMARK REVDAT 2 12-NOV-14 3T86 1 AUTHOR REVDAT 1 13-JUN-12 3T86 0 JRNL AUTH Y.GAN,J.H.THORPE,S.C.M.TEIXEIRA,A.NASEER,C.J.CARDIN JRNL TITL A NOVEL STRUCTURE FOR THE D(GCATGCT) QUADRUPLEX IN THE JRNL TITL 2 PRESENCE OF NICKEL AND COBALT AQUEOUS CATIONS : COMPARISON JRNL TITL 3 WITH THE VANADIUM, BARIUM AND CALCIUM-BOUND STRUCTURAL JRNL TITL 4 MOTIF. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 1233 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 64 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 87 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.3750 REMARK 3 BIN FREE R VALUE SET COUNT : 5 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 140 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 10 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.193 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.156 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.890 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 156 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 239 ; 2.199 ; 3.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): 71 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 43 ; 0.168 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 88 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 3 ; 0.273 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.127 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.130 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 3 ; 0.143 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3T86 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000067158. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-D REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XFIT, MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 1246 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 29.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: XFIT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DROPS INITIALLY CONTAINING 2UL 20 MM REMARK 280 SODIUM CACODYLATE, 2UL CALCIUM CHLORIDE, 2UL POTASSIUM CHLORIDE, REMARK 280 2 UL 10% PEG, 2UL 1 MM DNA, PH 6.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 11.37100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.17050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 11.37100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.17050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 11.37100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 29.17050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 11.37100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 29.17050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 22.74200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 22.74200 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 23.66900 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 23.66900 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A 9 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 101 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 103 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 106 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT A 4 O3' DT A 4 C3' -0.039 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG A 1 O4' - C1' - N9 ANGL. DEV. = -7.4 DEGREES REMARK 500 DT A 4 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG A 5 O4' - C1' - N9 ANGL. DEV. = -4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 8 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC A 2 OP1 REMARK 620 2 DC A 6 OP1 85.7 REMARK 620 3 HOH A 102 O 77.4 67.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 9 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 103 O REMARK 620 2 HOH A 106 O 92.1 REMARK 620 3 HOH A 107 O 83.3 95.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 9 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QYK RELATED DB: PDB REMARK 900 METAL IONS WITH THE GCATGCT SEQUENCE REMARK 900 RELATED ID: 1QYL RELATED DB: PDB REMARK 900 RELATED ID: 1QLZ RELATED DB: PDB REMARK 900 RELATED ID: 1R2O RELATED DB: PDB REMARK 900 RELATED ID: 1MF5 RELATED DB: PDB REMARK 900 RELATED ID: 184D RELATED DB: PDB DBREF 3T86 A 1 7 PDB 3T86 3T86 1 7 SEQRES 1 A 7 DG DC DA DT DG DC DT HET K A 8 1 HET CA A 9 1 HETNAM K POTASSIUM ION HETNAM CA CALCIUM ION FORMUL 2 K K 1+ FORMUL 3 CA CA 2+ FORMUL 4 HOH *10(H2 O) LINK OP1 DC A 2 K K A 8 1555 1555 2.85 LINK OP1 DC A 6 K K A 8 1555 1555 2.94 LINK K K A 8 O HOH A 102 1555 1555 3.13 LINK CA CA A 9 O HOH A 103 1555 1555 2.47 LINK CA CA A 9 O HOH A 106 1555 1555 2.21 LINK CA CA A 9 O HOH A 107 1555 1555 2.65 SITE 1 AC1 4 DG A 1 DC A 2 DC A 6 HOH A 102 SITE 1 AC2 3 HOH A 103 HOH A 106 HOH A 107 CRYST1 22.742 58.341 23.669 90.00 90.00 90.00 C 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.043972 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017141 0.000000 0.00000 SCALE3 0.000000 0.000000 0.042249 0.00000 ATOM 1 O5' DG A 1 17.025 9.020 8.603 1.00 20.44 O ATOM 2 C5' DG A 1 15.814 9.676 8.847 1.00 18.17 C ATOM 3 C4' DG A 1 14.706 8.884 8.177 1.00 17.95 C ATOM 4 O4' DG A 1 14.835 8.980 6.738 1.00 18.83 O ATOM 5 C3' DG A 1 14.552 7.397 8.496 1.00 15.80 C ATOM 6 O3' DG A 1 13.145 7.203 8.778 1.00 15.05 O ATOM 7 C2' DG A 1 15.042 6.703 7.225 1.00 16.42 C ATOM 8 C1' DG A 1 14.689 7.706 6.148 1.00 13.92 C ATOM 9 N9 DG A 1 15.636 7.810 5.051 1.00 16.35 N ATOM 10 C8 DG A 1 17.017 7.649 5.082 1.00 14.66 C ATOM 11 N7 DG A 1 17.557 7.853 3.915 1.00 15.55 N ATOM 12 C5 DG A 1 16.490 8.170 3.063 1.00 15.05 C ATOM 13 C6 DG A 1 16.448 8.482 1.663 1.00 14.28 C ATOM 14 O6 DG A 1 17.345 8.584 0.813 1.00 13.70 O ATOM 15 N1 DG A 1 15.152 8.724 1.243 1.00 15.89 N ATOM 16 C2 DG A 1 14.017 8.696 2.028 1.00 13.71 C ATOM 17 N2 DG A 1 12.869 8.980 1.407 1.00 12.40 N ATOM 18 N3 DG A 1 14.032 8.421 3.310 1.00 12.33 N ATOM 19 C4 DG A 1 15.300 8.152 3.754 1.00 14.15 C ATOM 20 P DC A 2 12.549 5.789 9.163 1.00 15.31 P ATOM 21 OP1 DC A 2 11.337 5.965 9.935 1.00 16.40 O ATOM 22 OP2 DC A 2 13.630 4.916 9.636 1.00 14.53 O ATOM 23 O5' DC A 2 12.067 5.211 7.791 1.00 16.87 O ATOM 24 C5' DC A 2 11.005 5.822 7.052 1.00 15.27 C ATOM 25 C4' DC A 2 11.007 5.176 5.683 1.00 15.01 C ATOM 26 O4' DC A 2 12.199 5.573 4.953 1.00 15.58 O ATOM 27 C3' DC A 2 11.045 3.656 5.703 1.00 13.50 C ATOM 28 O3' DC A 2 9.763 3.183 5.314 1.00 14.70 O ATOM 29 C2' DC A 2 12.122 3.258 4.692 1.00 12.97 C ATOM 30 C1' DC A 2 12.368 4.576 3.965 1.00 15.12 C ATOM 31 N1 DC A 2 13.699 4.715 3.388 1.00 13.17 N ATOM 32 C2 DC A 2 13.811 5.104 2.048 1.00 12.92 C ATOM 33 O2 DC A 2 12.799 5.360 1.379 1.00 13.25 O ATOM 34 N3 DC A 2 15.048 5.233 1.521 1.00 14.79 N ATOM 35 C4 DC A 2 16.129 4.976 2.274 1.00 13.98 C ATOM 36 N4 DC A 2 17.333 5.108 1.703 1.00 13.63 N ATOM 37 C5 DC A 2 16.021 4.551 3.629 1.00 14.55 C ATOM 38 C6 DC A 2 14.794 4.438 4.146 1.00 12.93 C ATOM 39 P DA A 3 8.926 2.212 6.252 1.00 14.97 P ATOM 40 OP1 DA A 3 8.888 2.849 7.585 1.00 18.02 O ATOM 41 OP2 DA A 3 9.465 0.879 6.049 1.00 13.55 O ATOM 42 O5' DA A 3 7.450 2.322 5.711 1.00 15.47 O ATOM 43 C5' DA A 3 6.748 3.585 5.714 1.00 15.06 C ATOM 44 C4' DA A 3 5.893 3.713 4.463 1.00 15.41 C ATOM 45 O4' DA A 3 6.779 3.850 3.332 1.00 15.90 O ATOM 46 C3' DA A 3 4.956 2.556 4.094 1.00 14.58 C ATOM 47 O3' DA A 3 3.736 3.128 3.637 1.00 16.86 O ATOM 48 C2' DA A 3 5.679 1.786 3.002 1.00 11.79 C ATOM 49 C1' DA A 3 6.395 2.945 2.326 1.00 12.60 C ATOM 50 N9 DA A 3 7.593 2.582 1.573 1.00 13.61 N ATOM 51 C8 DA A 3 8.890 2.629 1.995 1.00 11.90 C ATOM 52 N7 DA A 3 9.744 2.243 1.088 1.00 13.07 N ATOM 53 C5 DA A 3 8.952 1.932 0.007 1.00 11.80 C ATOM 54 C6 DA A 3 9.221 1.474 -1.303 1.00 12.99 C ATOM 55 N6 DA A 3 10.443 1.209 -1.752 1.00 13.19 N ATOM 56 N1 DA A 3 8.182 1.268 -2.147 1.00 12.11 N ATOM 57 C2 DA A 3 6.953 1.491 -1.737 1.00 9.82 C ATOM 58 N3 DA A 3 6.579 1.950 -0.557 1.00 14.17 N ATOM 59 C4 DA A 3 7.629 2.127 0.285 1.00 11.54 C ATOM 60 P DT A 4 2.284 2.571 4.016 1.00 18.41 P ATOM 61 OP1 DT A 4 2.300 1.081 4.081 1.00 16.24 O ATOM 62 OP2 DT A 4 1.470 3.281 3.038 1.00 20.91 O ATOM 63 O5' DT A 4 1.914 3.122 5.450 1.00 16.58 O ATOM 64 C5' DT A 4 1.583 4.468 5.738 1.00 15.45 C ATOM 65 C4' DT A 4 1.733 4.633 7.226 1.00 17.28 C ATOM 66 O4' DT A 4 1.110 3.492 7.870 1.00 17.47 O ATOM 67 C3' DT A 4 3.192 4.637 7.661 1.00 16.98 C ATOM 68 O3' DT A 4 3.389 5.603 8.626 1.00 17.37 O ATOM 69 C2' DT A 4 3.402 3.281 8.319 1.00 16.55 C ATOM 70 C1' DT A 4 1.993 2.928 8.785 1.00 14.13 C ATOM 71 N1 DT A 4 1.867 1.480 8.804 1.00 15.58 N ATOM 72 C2 DT A 4 1.746 0.888 10.041 1.00 16.45 C ATOM 73 O2 DT A 4 1.706 1.522 11.076 1.00 14.27 O ATOM 74 N3 DT A 4 1.662 -0.480 10.035 1.00 16.85 N ATOM 75 C4 DT A 4 1.706 -1.288 8.925 1.00 16.33 C ATOM 76 O4 DT A 4 1.640 -2.493 9.070 1.00 17.42 O ATOM 77 C5 DT A 4 1.833 -0.626 7.641 1.00 16.84 C ATOM 78 C7 DT A 4 1.615 -1.389 6.359 1.00 17.93 C ATOM 79 C6 DT A 4 1.916 0.720 7.641 1.00 15.82 C ATOM 80 P DG A 5 3.800 7.113 8.345 1.00 18.35 P ATOM 81 OP1 DG A 5 3.805 7.782 9.631 1.00 20.29 O ATOM 82 OP2 DG A 5 3.010 7.685 7.265 1.00 17.76 O ATOM 83 O5' DG A 5 5.319 6.960 7.916 1.00 19.97 O ATOM 84 C5' DG A 5 6.367 6.501 8.723 1.00 18.24 C ATOM 85 C4' DG A 5 7.655 7.062 8.155 1.00 16.97 C ATOM 86 O4' DG A 5 7.825 6.681 6.765 1.00 16.91 O ATOM 87 C3' DG A 5 7.812 8.579 8.167 1.00 16.06 C ATOM 88 O3' DG A 5 9.207 8.802 8.370 1.00 19.01 O ATOM 89 C2' DG A 5 7.340 9.024 6.784 1.00 15.46 C ATOM 90 C1' DG A 5 7.832 7.864 5.931 1.00 16.70 C ATOM 91 N9 DG A 5 6.962 7.497 4.811 1.00 15.66 N ATOM 92 C8 DG A 5 5.595 7.493 4.838 1.00 13.93 C ATOM 93 N7 DG A 5 5.057 7.070 3.755 1.00 13.92 N ATOM 94 C5 DG A 5 6.124 6.769 2.918 1.00 15.35 C ATOM 95 C6 DG A 5 6.153 6.259 1.581 1.00 15.43 C ATOM 96 O6 DG A 5 5.230 5.959 0.830 1.00 15.70 O ATOM 97 N1 DG A 5 7.446 6.086 1.097 1.00 13.62 N ATOM 98 C2 DG A 5 8.555 6.353 1.838 1.00 15.95 C ATOM 99 N2 DG A 5 9.686 6.119 1.184 1.00 15.88 N ATOM 100 N3 DG A 5 8.567 6.825 3.085 1.00 14.50 N ATOM 101 C4 DG A 5 7.316 7.012 3.566 1.00 15.93 C ATOM 102 P DC A 6 9.750 10.201 8.873 1.00 20.51 P ATOM 103 OP1 DC A 6 10.685 9.848 9.967 1.00 23.62 O ATOM 104 OP2 DC A 6 8.592 11.079 9.048 1.00 19.73 O ATOM 105 O5' DC A 6 10.523 10.797 7.616 1.00 23.28 O ATOM 106 C5' DC A 6 11.605 10.109 7.005 1.00 21.50 C ATOM 107 C4' DC A 6 11.707 10.460 5.544 1.00 20.07 C ATOM 108 O4' DC A 6 10.572 9.928 4.828 1.00 19.93 O ATOM 109 C3' DC A 6 11.698 11.959 5.298 1.00 21.04 C ATOM 110 O3' DC A 6 12.904 12.312 4.654 1.00 22.52 O ATOM 111 C2' DC A 6 10.515 12.223 4.369 1.00 20.33 C ATOM 112 C1' DC A 6 10.308 10.833 3.767 1.00 19.56 C ATOM 113 N1 DC A 6 8.941 10.569 3.206 1.00 18.82 N ATOM 114 C2 DC A 6 8.797 10.012 1.906 1.00 15.98 C ATOM 115 O2 DC A 6 9.792 9.723 1.232 1.00 16.79 O ATOM 116 N3 DC A 6 7.548 9.781 1.439 1.00 14.67 N ATOM 117 C4 DC A 6 6.481 10.098 2.179 1.00 14.47 C ATOM 118 N4 DC A 6 5.282 9.838 1.677 1.00 15.78 N ATOM 119 C5 DC A 6 6.595 10.682 3.480 1.00 13.49 C ATOM 120 C6 DC A 6 7.834 10.903 3.950 1.00 15.28 C ATOM 121 P DT A 7 13.762 13.567 5.110 1.00 22.55 P ATOM 122 OP1 DT A 7 13.613 13.686 6.570 1.00 23.47 O ATOM 123 OP2 DT A 7 13.503 14.643 4.166 1.00 22.37 O ATOM 124 O5' DT A 7 15.233 13.036 4.871 1.00 23.50 O ATOM 125 C5' DT A 7 15.762 11.908 5.528 1.00 23.47 C ATOM 126 C4' DT A 7 16.977 11.482 4.739 1.00 26.37 C ATOM 127 O4' DT A 7 16.519 11.165 3.421 1.00 27.53 O ATOM 128 C3' DT A 7 17.993 12.592 4.519 1.00 28.72 C ATOM 129 O3' DT A 7 19.075 12.343 5.391 1.00 32.12 O ATOM 130 C2' DT A 7 18.403 12.519 3.047 1.00 28.39 C ATOM 131 C1' DT A 7 17.404 11.563 2.403 1.00 25.75 C ATOM 132 N1 DT A 7 16.529 12.112 1.334 1.00 24.91 N ATOM 133 C2 DT A 7 17.060 12.595 0.151 1.00 25.24 C ATOM 134 O2 DT A 7 18.249 12.619 -0.090 1.00 28.17 O ATOM 135 N3 DT A 7 16.158 13.088 -0.758 1.00 23.54 N ATOM 136 C4 DT A 7 14.786 13.119 -0.612 1.00 25.57 C ATOM 137 O4 DT A 7 14.061 13.573 -1.490 1.00 25.81 O ATOM 138 C5 DT A 7 14.269 12.596 0.645 1.00 25.17 C ATOM 139 C7 DT A 7 12.855 12.866 1.055 1.00 24.55 C ATOM 140 C6 DT A 7 15.158 12.116 1.530 1.00 25.25 C TER 141 DT A 7 HETATM 142 K K A 8 11.541 7.907 12.005 0.50 33.81 K HETATM 143 CA CA A 9 -0.003 0.067 0.000 0.25 18.66 CA HETATM 144 O HOH A 101 11.371 0.000 4.251 0.50 8.15 O HETATM 145 O HOH A 102 8.457 7.809 11.459 1.00 17.38 O HETATM 146 O HOH A 103 0.000 0.000 -2.465 0.50 10.77 O HETATM 147 O HOH A 104 7.920 -1.011 4.909 1.00 11.65 O HETATM 148 O HOH A 105 3.762 2.275 -0.367 1.00 13.37 O HETATM 149 O HOH A 106 0.031 2.275 0.020 0.50 16.89 O HETATM 150 O HOH A 107 2.610 -0.242 -0.296 0.50 18.18 O HETATM 151 O HOH A 108 5.206 -1.217 5.464 1.00 18.64 O HETATM 152 O HOH A 109 3.713 -0.908 3.673 1.00 21.27 O HETATM 153 O HOH A 110 11.309 2.122 9.432 1.00 20.13 O CONECT 21 142 CONECT 103 142 CONECT 142 21 103 145 CONECT 143 146 149 150 CONECT 145 142 CONECT 146 143 CONECT 149 143 CONECT 150 143 MASTER 354 0 2 0 0 0 2 6 152 1 8 1 END