0.016301
0.000000
0.004869
0.000000
0.020070
0.000000
0.000000
0.000000
0.016039
0.00000
0.00000
0.00000
Yamini, S.
Gautam, L.
Sinha, M.
Kaur, P.
Sharma, S.
Singh, T.P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
106.63
90.00
61.347
49.826
65.068
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C O3 -2
60.009
CARBONATE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
Fe 3
55.845
FE (III) ION
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C15 H16 O2
228.286
nabumetone
4-(6-methoxynaphthalen-2-yl)butan-2-one
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
C
N
75
N
O
N
76
N
O
N
77
N
O
N
78
N
N
N
79
R
C
N
80
N
C
N
81
N
O
N
82
N
C
N
83
N
S
N
84
N
O
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
FE
N
93
N
N
N
94
S
C
N
95
N
C
N
96
N
O
N
97
N
C
N
98
N
C
N
99
N
C
N
100
N
O
N
101
N
N
N
102
N
O
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
S
C
N
115
N
C
N
116
N
O
N
117
N
C
N
118
N
C
N
119
N
C
N
120
N
O
N
121
N
O
N
122
N
O
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
N
N
133
N
C
N
134
N
C
N
135
N
O
N
136
N
O
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
N
N
143
S
C
N
144
N
C
N
145
N
O
N
146
N
C
Y
147
N
C
Y
148
N
N
Y
149
N
C
Y
150
N
C
Y
151
N
N
N
152
N
O
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
O
N
164
N
H
N
165
N
H
N
166
N
N
N
167
S
C
N
168
N
C
N
169
N
O
N
170
S
C
N
171
N
C
N
172
N
C
N
173
N
C
N
174
N
O
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
N
N
189
S
C
N
190
N
C
N
191
N
O
N
192
N
C
N
193
N
C
N
194
N
C
N
195
N
C
N
196
N
O
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
N
N
211
S
C
N
212
N
C
N
213
N
O
N
214
N
C
N
215
N
C
N
216
N
C
N
217
N
C
N
218
N
N
N
219
N
O
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
N
N
236
S
C
N
237
N
C
N
238
N
O
N
239
N
C
N
240
N
C
N
241
N
S
N
242
N
C
N
243
N
O
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
R
C
N
256
R
C
N
257
R
C
N
258
S
C
N
259
R
C
N
260
N
C
N
261
N
C
N
262
N
C
N
263
N
N
N
264
N
O
N
265
N
O
N
266
N
O
N
267
N
O
N
268
N
O
N
269
N
O
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
C
N
286
N
O
N
287
N
C
N
288
N
C
N
289
N
C
Y
290
N
C
Y
291
N
C
N
292
N
C
Y
293
N
C
N
294
N
O
Y
295
N
C
Y
296
N
C
Y
297
N
C
Y
298
N
C
Y
299
N
C
Y
300
N
C
Y
301
N
C
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
N
C
Y
323
N
C
Y
324
N
C
Y
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
N
329
N
O
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
N
N
342
S
C
N
343
N
C
N
344
N
O
N
345
N
C
N
346
N
C
N
347
N
C
N
348
N
O
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
N
N
359
S
C
N
360
N
C
N
361
N
O
N
362
N
C
N
363
N
O
N
364
N
O
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
S
N
373
N
O
N
374
N
O
N
375
N
O
N
376
N
O
N
377
N
N
N
378
S
C
N
379
N
C
N
380
N
O
N
381
R
C
N
382
N
O
N
383
N
C
N
384
N
O
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
N
N
395
S
C
N
396
N
C
N
397
N
O
N
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
N
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
N
408
N
O
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
N
N
422
S
C
N
423
N
C
N
424
N
O
N
425
N
C
Y
426
N
C
Y
427
N
C
Y
428
N
C
Y
429
N
C
Y
430
N
C
Y
431
N
C
N
432
N
O
N
433
N
O
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
N
N
446
S
C
N
447
N
C
N
448
N
O
N
449
N
C
N
450
N
C
N
451
N
C
N
452
N
O
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
doub
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
doub
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
doub
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
doub
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
doub
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
Y
143
N
sing
Y
144
N
doub
Y
145
N
doub
N
146
N
sing
Y
147
N
sing
N
148
N
sing
Y
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
doub
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
doub
N
272
N
sing
N
273
N
sing
N
274
N
sing
Y
275
N
doub
Y
276
N
sing
Y
277
N
sing
N
278
N
sing
Y
279
N
doub
N
280
N
sing
Y
281
N
sing
Y
282
N
sing
Y
283
N
doub
Y
284
N
sing
Y
285
N
doub
Y
286
N
sing
Y
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
Y
315
N
doub
Y
316
N
sing
Y
317
N
sing
N
318
N
sing
Y
319
N
doub
N
320
N
sing
Y
321
N
doub
N
322
N
sing
Y
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
doub
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
doub
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
doub
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
doub
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
Y
388
N
doub
Y
389
N
sing
Y
390
N
sing
N
391
N
sing
Y
392
N
doub
Y
393
N
sing
Y
394
N
sing
N
395
N
sing
Y
396
N
sing
Y
397
N
doub
N
398
N
sing
Y
399
N
doub
N
400
N
sing
Y
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
doub
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
Y
416
N
doub
Y
417
N
sing
Y
418
N
sing
N
419
N
sing
Y
420
N
doub
N
421
N
sing
Y
422
N
doub
N
423
N
sing
Y
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
doub
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
To be Published
0353
Crystal structure of C-lobe of bovine lactoferrin complexed with Nabumetone at 1.7A resolution
10.2210/pdb3taj/pdb
pdb_00003taj
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
77
1
Mirror
CCD
2011-07-16
MARRESEARCH
Graphite
SINGLE WAVELENGTH
M
x-ray
1
0.97
1.0
BM14
ESRF
0.97
SYNCHROTRON
ESRF BEAMLINE BM14
37655.504
Lactotransferrin
3.4.21.-
C-lobe (UNP RESIDUES 361-705)
1
nat
polymer
424.401
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
2
man
branched
228.286
nabumetone
1
syn
non-polymer
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
non-polymer
65.409
ZINC ION
2
syn
non-polymer
55.845
FE (III) ION
1
syn
non-polymer
60.009
CARBONATE ION
1
syn
non-polymer
96.063
SULFATE ION
1
syn
non-polymer
18.015
water
224
nat
water
Lactoferrin, Lactoferricin-B, Lfcin-B
no
no
YTRVVWCAVGPEEQKKCQQWSQQSGQNVTCATASTTDDCIVLVLKGEADALNLDGGYIYTAGKCGLVPVLAENRKSSKHS
SLDCVLRPTEGYLAVAVVKKANEGLTWNSLKDKKSCHTAVDRTAGWNIPMGLIVNQTGSCAFDEFFSQSCAPGADPKSRL
CALCAGDDQGLDKCVPNSKEKYYGYTGAFRCLAEDVGDVAFVKNDTVWENTNGESTADWAKNLKREDFRLLCLDGTRKPV
TEAQSCHLAVAPNHAVVSRSDRAAHVEQVLLHQQALFGKNGKNCPDKFCLFKSETKNLLFNDNTECLAKLGGRPTYEEYL
GTEYVTAIANLKKCSTSPLLEACAF
YTRVVWCAVGPEEQKKCQQWSQQSGQNVTCATASTTDDCIVLVLKGEADALNLDGGYIYTAGKCGLVPVLAENRKSSKHS
SLDCVLRPTEGYLAVAVVKKANEGLTWNSLKDKKSCHTAVDRTAGWNIPMGLIVNQTGSCAFDEFFSQSCAPGADPKSRL
CALCAGDDQGLDKCVPNSKEKYYGYTGAFRCLAEDVGDVAFVKNDTVWENTNGESTADWAKNLKREDFRLLCLDGTRKPV
TEAQSCHLAVAPNHAVVSRSDRAAHVEQVLLHQQALFGKNGKNCPDKFCLFKSETKNLLFNDNTECLAKLGGRPTYEEYL
GTEYVTAIANLKKCSTSPLLEACAF
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
bovine
sample
9913
Bos taurus
1
2.53
51.39
VAPOR DIFFUSION, HANGING DROP
6.5
0.01M Znso4, 0.1M MES, 25% PEG, Monomethyl Ether 550, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
reflns
struct_conn
atom_site
chem_comp
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
pdbx_struct_conn_angle
struct_asym
struct_conn
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Carbohydrate remediation
repository
Remediation
Data collection
Derived calculations
Atomic model
Data collection
Derived calculations
Structure summary
Data collection
Database references
Refinement description
Structure summary
1
0
2011-08-31
1
1
2019-12-11
2
0
2020-07-29
2
1
2023-11-01
_reflns.pdbx_Rsym_value
_struct_conn.pdbx_leaving_atom_flag
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.occupancy
_atom_site.type_symbol
_chem_comp.name
_chem_comp.type
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_role
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
A
NAG
2
n
B
NAG
1
A
NAG
3
n
B
NAG
2
A
NAG
5
n
C
NAG
1
A
NAG
6
n
C
NAG
2
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
RCSB
Y
PDBJ
2011-08-04
REL
REL
oligosaccharide
DGlcpNAcb1-4DGlcpNAcb1-
2
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1
2
PDB2Glycan
1.1.0
WURCS
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}
2
PDB-CARE
LINUCS
C1
O4
NAG
NAG
2
1
2
O1
HO4
sing
n
n
NBO
nabumetone
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose
ZN
ZINC ION
FE
FE (III) ION
CO3
CARBONATE ION
SO4
SULFATE ION
HOH
water
THERE IS A CONFLICT BETWEEN SEQRES(LYS A 565, GLU A 608) AND SEQUENCE DATABASE (ASN, LYS). THE AUTHORS BELIEVE THAT THE SEQRES IS CORRECT AND IS THE TRUE IDENTITY OF THESE RESIDUES AND IS NATURAL MUTANT.
3O97
PDB
experimental model
NBO
700
3
NBO
NBO
700
A
NAG
1
4
NAG
NAG
1
A
ZN
302
5
ZN
ZN
302
A
ZN
303
5
ZN
ZN
303
A
FE
690
6
FE
FE
690
A
CO3
691
7
CO3
CO3
691
A
SO4
301
8
SO4
SO4
301
A
HOH
4
9
HOH
HOH
4
A
HOH
7
9
HOH
HOH
7
A
HOH
8
9
HOH
HOH
8
A
HOH
9
9
HOH
HOH
9
A
HOH
11
9
HOH
HOH
11
A
HOH
12
9
HOH
HOH
12
A
HOH
13
9
HOH
HOH
13
A
HOH
14
9
HOH
HOH
14
A
HOH
15
9
HOH
HOH
15
A
HOH
16
9
HOH
HOH
16
A
HOH
17
9
HOH
HOH
17
A
HOH
18
9
HOH
HOH
18
A
HOH
19
9
HOH
HOH
19
A
HOH
20
9
HOH
HOH
20
A
HOH
21
9
HOH
HOH
21
A
HOH
22
9
HOH
HOH
22
A
HOH
23
9
HOH
HOH
23
A
HOH
24
9
HOH
HOH
24
A
HOH
25
9
HOH
HOH
25
A
HOH
26
9
HOH
HOH
26
A
HOH
27
9
HOH
HOH
27
A
HOH
28
9
HOH
HOH
28
A
HOH
29
9
HOH
HOH
29
A
HOH
30
9
HOH
HOH
30
A
HOH
31
9
HOH
HOH
31
A
HOH
32
9
HOH
HOH
32
A
HOH
33
9
HOH
HOH
33
A
HOH
34
9
HOH
HOH
34
A
HOH
35
9
HOH
HOH
35
A
HOH
36
9
HOH
HOH
36
A
HOH
37
9
HOH
HOH
37
A
HOH
38
9
HOH
HOH
38
A
HOH
39
9
HOH
HOH
39
A
HOH
40
9
HOH
HOH
40
A
HOH
41
9
HOH
HOH
41
A
HOH
42
9
HOH
HOH
42
A
HOH
43
9
HOH
HOH
43
A
HOH
44
9
HOH
HOH
44
A
HOH
45
9
HOH
HOH
45
A
HOH
46
9
HOH
HOH
46
A
HOH
47
9
HOH
HOH
47
A
HOH
48
9
HOH
HOH
48
A
HOH
49
9
HOH
HOH
49
A
HOH
51
9
HOH
HOH
51
A
HOH
52
9
HOH
HOH
52
A
HOH
53
9
HOH
HOH
53
A
HOH
54
9
HOH
HOH
54
A
HOH
55
9
HOH
HOH
55
A
HOH
56
9
HOH
HOH
56
A
HOH
57
9
HOH
HOH
57
A
HOH
58
9
HOH
HOH
58
A
HOH
59
9
HOH
HOH
59
A
HOH
60
9
HOH
HOH
60
A
HOH
61
9
HOH
HOH
61
A
HOH
62
9
HOH
HOH
62
A
HOH
63
9
HOH
HOH
63
A
HOH
64
9
HOH
HOH
64
A
HOH
65
9
HOH
HOH
65
A
HOH
66
9
HOH
HOH
66
A
HOH
67
9
HOH
HOH
67
A
HOH
68
9
HOH
HOH
68
A
HOH
69
9
HOH
HOH
69
A
HOH
70
9
HOH
HOH
70
A
HOH
71
9
HOH
HOH
71
A
HOH
72
9
HOH
HOH
72
A
HOH
73
9
HOH
HOH
73
A
HOH
75
9
HOH
HOH
75
A
HOH
76
9
HOH
HOH
76
A
HOH
77
9
HOH
HOH
77
A
HOH
78
9
HOH
HOH
78
A
HOH
80
9
HOH
HOH
80
A
HOH
81
9
HOH
HOH
81
A
HOH
82
9
HOH
HOH
82
A
HOH
83
9
HOH
HOH
83
A
HOH
84
9
HOH
HOH
84
A
HOH
85
9
HOH
HOH
85
A
HOH
86
9
HOH
HOH
86
A
HOH
87
9
HOH
HOH
87
A
HOH
88
9
HOH
HOH
88
A
HOH
89
9
HOH
HOH
89
A
HOH
90
9
HOH
HOH
90
A
HOH
91
9
HOH
HOH
91
A
HOH
92
9
HOH
HOH
92
A
HOH
94
9
HOH
HOH
94
A
HOH
95
9
HOH
HOH
95
A
HOH
96
9
HOH
HOH
96
A
HOH
97
9
HOH
HOH
97
A
HOH
98
9
HOH
HOH
98
A
HOH
99
9
HOH
HOH
99
A
HOH
100
9
HOH
HOH
100
A
HOH
101
9
HOH
HOH
101
A
HOH
102
9
HOH
HOH
102
A
HOH
104
9
HOH
HOH
104
A
HOH
105
9
HOH
HOH
105
A
HOH
106
9
HOH
HOH
106
A
HOH
107
9
HOH
HOH
107
A
HOH
108
9
HOH
HOH
108
A
HOH
109
9
HOH
HOH
109
A
HOH
110
9
HOH
HOH
110
A
HOH
111
9
HOH
HOH
111
A
HOH
112
9
HOH
HOH
112
A
HOH
113
9
HOH
HOH
113
A
HOH
114
9
HOH
HOH
114
A
HOH
115
9
HOH
HOH
115
A
HOH
116
9
HOH
HOH
116
A
HOH
118
9
HOH
HOH
118
A
HOH
119
9
HOH
HOH
119
A
HOH
120
9
HOH
HOH
120
A
HOH
121
9
HOH
HOH
121
A
HOH
122
9
HOH
HOH
122
A
HOH
123
9
HOH
HOH
123
A
HOH
124
9
HOH
HOH
124
A
HOH
125
9
HOH
HOH
125
A
HOH
126
9
HOH
HOH
126
A
HOH
127
9
HOH
HOH
127
A
HOH
128
9
HOH
HOH
128
A
HOH
129
9
HOH
HOH
129
A
HOH
130
9
HOH
HOH
130
A
HOH
131
9
HOH
HOH
131
A
HOH
133
9
HOH
HOH
133
A
HOH
134
9
HOH
HOH
134
A
HOH
135
9
HOH
HOH
135
A
HOH
136
9
HOH
HOH
136
A
HOH
137
9
HOH
HOH
137
A
HOH
138
9
HOH
HOH
138
A
HOH
139
9
HOH
HOH
139
A
HOH
140
9
HOH
HOH
140
A
HOH
141
9
HOH
HOH
141
A
HOH
142
9
HOH
HOH
142
A
HOH
143
9
HOH
HOH
143
A
HOH
144
9
HOH
HOH
144
A
HOH
145
9
HOH
HOH
145
A
HOH
146
9
HOH
HOH
146
A
HOH
147
9
HOH
HOH
147
A
HOH
148
9
HOH
HOH
148
A
HOH
149
9
HOH
HOH
149
A
HOH
150
9
HOH
HOH
150
A
HOH
151
9
HOH
HOH
151
A
HOH
152
9
HOH
HOH
152
A
HOH
153
9
HOH
HOH
153
A
HOH
155
9
HOH
HOH
155
A
HOH
156
9
HOH
HOH
156
A
HOH
157
9
HOH
HOH
157
A
HOH
158
9
HOH
HOH
158
A
HOH
159
9
HOH
HOH
159
A
HOH
160
9
HOH
HOH
160
A
HOH
161
9
HOH
HOH
161
A
HOH
163
9
HOH
HOH
163
A
HOH
165
9
HOH
HOH
165
A
HOH
166
9
HOH
HOH
166
A
HOH
167
9
HOH
HOH
167
A
HOH
168
9
HOH
HOH
168
A
HOH
169
9
HOH
HOH
169
A
HOH
170
9
HOH
HOH
170
A
HOH
171
9
HOH
HOH
171
A
HOH
173
9
HOH
HOH
173
A
HOH
174
9
HOH
HOH
174
A
HOH
175
9
HOH
HOH
175
A
HOH
179
9
HOH
HOH
179
A
HOH
180
9
HOH
HOH
180
A
HOH
181
9
HOH
HOH
181
A
HOH
183
9
HOH
HOH
183
A
HOH
185
9
HOH
HOH
185
A
HOH
187
9
HOH
HOH
187
A
HOH
188
9
HOH
HOH
188
A
HOH
189
9
HOH
HOH
189
A
HOH
190
9
HOH
HOH
190
A
HOH
191
9
HOH
HOH
191
A
HOH
192
9
HOH
HOH
192
A
HOH
193
9
HOH
HOH
193
A
HOH
194
9
HOH
HOH
194
A
HOH
195
9
HOH
HOH
195
A
HOH
199
9
HOH
HOH
199
A
HOH
201
9
HOH
HOH
201
A
HOH
202
9
HOH
HOH
202
A
HOH
203
9
HOH
HOH
203
A
HOH
205
9
HOH
HOH
205
A
HOH
207
9
HOH
HOH
207
A
HOH
208
9
HOH
HOH
208
A
HOH
209
9
HOH
HOH
209
A
HOH
210
9
HOH
HOH
210
A
HOH
211
9
HOH
HOH
211
A
HOH
212
9
HOH
HOH
212
A
HOH
215
9
HOH
HOH
215
A
HOH
216
9
HOH
HOH
216
A
HOH
217
9
HOH
HOH
217
A
HOH
219
9
HOH
HOH
219
A
HOH
220
9
HOH
HOH
220
A
HOH
222
9
HOH
HOH
222
A
HOH
223
9
HOH
HOH
223
A
HOH
224
9
HOH
HOH
224
A
HOH
226
9
HOH
HOH
226
A
HOH
227
9
HOH
HOH
227
A
HOH
228
9
HOH
HOH
228
A
HOH
229
9
HOH
HOH
229
A
HOH
230
9
HOH
HOH
230
A
HOH
231
9
HOH
HOH
231
A
HOH
233
9
HOH
HOH
233
A
HOH
234
9
HOH
HOH
234
A
HOH
237
9
HOH
HOH
237
A
HOH
238
9
HOH
HOH
238
A
HOH
239
9
HOH
HOH
239
A
HOH
241
9
HOH
HOH
241
A
HOH
243
9
HOH
HOH
243
A
HOH
247
9
HOH
HOH
247
A
HOH
248
9
HOH
HOH
248
A
HOH
249
9
HOH
HOH
249
A
HOH
250
9
HOH
HOH
250
A
HOH
252
9
HOH
HOH
252
A
HOH
253
9
HOH
HOH
253
A
HOH
254
9
HOH
HOH
254
A
HOH
256
9
HOH
HOH
256
A
HOH
257
9
HOH
HOH
257
A
HOH
258
9
HOH
HOH
258
A
HOH
259
9
HOH
HOH
259
A
HOH
261
9
HOH
HOH
261
A
HOH
262
9
HOH
HOH
262
A
HOH
263
9
HOH
HOH
263
A
HOH
264
9
HOH
HOH
264
A
HOH
1
9
HOH
HOH
687
A
HOH
2
9
HOH
HOH
688
A
HOH
3
9
HOH
HOH
689
A
HOH
5
9
HOH
HOH
692
A
HOH
6
9
HOH
HOH
693
A
TYR
342
n
1
TYR
342
A
THR
343
n
2
THR
343
A
ARG
344
n
3
ARG
344
A
VAL
345
n
4
VAL
345
A
VAL
346
n
5
VAL
346
A
TRP
347
n
6
TRP
347
A
CYS
348
n
7
CYS
348
A
ALA
349
n
8
ALA
349
A
VAL
350
n
9
VAL
350
A
GLY
351
n
10
GLY
351
A
PRO
352
n
11
PRO
352
A
GLU
353
n
12
GLU
353
A
GLU
354
n
13
GLU
354
A
GLN
355
n
14
GLN
355
A
LYS
356
n
15
LYS
356
A
LYS
357
n
16
LYS
357
A
CYS
358
n
17
CYS
358
A
GLN
359
n
18
GLN
359
A
GLN
360
n
19
GLN
360
A
TRP
361
n
20
TRP
361
A
SER
362
n
21
SER
362
A
GLN
363
n
22
GLN
363
A
GLN
364
n
23
GLN
364
A
SER
365
n
24
SER
365
A
GLY
366
n
25
GLY
366
A
GLN
367
n
26
GLN
367
A
ASN
368
n
27
ASN
368
A
VAL
369
n
28
VAL
369
A
THR
370
n
29
THR
370
A
CYS
371
n
30
CYS
371
A
ALA
372
n
31
ALA
372
A
THR
373
n
32
THR
373
A
ALA
374
n
33
ALA
374
A
SER
375
n
34
SER
375
A
THR
376
n
35
THR
376
A
THR
377
n
36
THR
377
A
ASP
378
n
37
ASP
378
A
ASP
379
n
38
ASP
379
A
CYS
380
n
39
CYS
380
A
ILE
381
n
40
ILE
381
A
VAL
382
n
41
VAL
382
A
LEU
383
n
42
LEU
383
A
VAL
384
n
43
VAL
384
A
LEU
385
n
44
LEU
385
A
LYS
386
n
45
LYS
386
A
GLY
387
n
46
GLY
387
A
GLU
388
n
47
GLU
388
A
ALA
389
n
48
ALA
389
A
ASP
390
n
49
ASP
390
A
ALA
391
n
50
ALA
391
A
LEU
392
n
51
LEU
392
A
ASN
393
n
52
ASN
393
A
LEU
394
n
53
LEU
394
A
ASP
395
n
54
ASP
395
A
GLY
396
n
55
GLY
396
A
GLY
397
n
56
GLY
397
A
TYR
398
n
57
TYR
398
A
ILE
399
n
58
ILE
399
A
TYR
400
n
59
TYR
400
A
THR
401
n
60
THR
401
A
ALA
402
n
61
ALA
402
A
GLY
403
n
62
GLY
403
A
LYS
404
n
63
LYS
404
A
CYS
405
n
64
CYS
405
A
GLY
406
n
65
GLY
406
A
LEU
407
n
66
LEU
407
A
VAL
408
n
67
VAL
408
A
PRO
409
n
68
PRO
409
A
VAL
410
n
69
VAL
410
A
LEU
411
n
70
LEU
411
A
ALA
412
n
71
ALA
412
A
GLU
413
n
72
GLU
413
A
ASN
414
n
73
ASN
414
A
ARG
415
n
74
ARG
415
A
LYS
416
n
75
LYS
416
A
SER
417
n
76
SER
417
A
SER
418
n
77
SER
418
A
LYS
419
n
78
LYS
419
A
HIS
420
n
79
HIS
420
A
SER
421
n
80
SER
421
A
SER
422
n
81
SER
422
A
LEU
423
n
82
LEU
423
A
ASP
424
n
83
ASP
424
A
CYS
425
n
84
CYS
425
A
VAL
426
n
85
VAL
426
A
LEU
427
n
86
LEU
427
A
ARG
428
n
87
ARG
428
A
PRO
429
n
88
PRO
429
A
THR
430
n
89
THR
430
A
GLU
431
n
90
GLU
431
A
GLY
432
n
91
GLY
432
A
TYR
433
n
92
TYR
433
A
LEU
434
n
93
LEU
434
A
ALA
435
n
94
ALA
435
A
VAL
436
n
95
VAL
436
A
ALA
437
n
96
ALA
437
A
VAL
438
n
97
VAL
438
A
VAL
439
n
98
VAL
439
A
LYS
440
n
99
LYS
440
A
LYS
441
n
100
LYS
441
A
ALA
442
n
101
ALA
442
A
ASN
443
n
102
ASN
443
A
GLU
444
n
103
GLU
444
A
GLY
445
n
104
GLY
445
A
LEU
446
n
105
LEU
446
A
THR
447
n
106
THR
447
A
TRP
448
n
107
TRP
448
A
ASN
449
n
108
ASN
449
A
SER
450
n
109
SER
450
A
LEU
451
n
110
LEU
451
A
LYS
452
n
111
LYS
452
A
ASP
453
n
112
ASP
453
A
LYS
454
n
113
LYS
454
A
LYS
455
n
114
LYS
455
A
SER
456
n
115
SER
456
A
CYS
457
n
116
CYS
457
A
HIS
458
n
117
HIS
458
A
THR
459
n
118
THR
459
A
ALA
460
n
119
ALA
460
A
VAL
461
n
120
VAL
461
A
ASP
462
n
121
ASP
462
A
ARG
463
n
122
ARG
463
A
THR
464
n
123
THR
464
A
ALA
465
n
124
ALA
465
A
GLY
466
n
125
GLY
466
A
TRP
467
n
126
TRP
467
A
ASN
468
n
127
ASN
468
A
ILE
469
n
128
ILE
469
A
PRO
470
n
129
PRO
470
A
MET
471
n
130
MET
471
A
GLY
472
n
131
GLY
472
A
LEU
473
n
132
LEU
473
A
ILE
474
n
133
ILE
474
A
VAL
475
n
134
VAL
475
A
ASN
476
n
135
ASN
476
A
GLN
477
n
136
GLN
477
A
THR
478
n
137
THR
478
A
GLY
479
n
138
GLY
479
A
SER
480
n
139
SER
480
A
CYS
481
n
140
CYS
481
A
ALA
482
n
141
ALA
482
A
PHE
483
n
142
PHE
483
A
ASP
484
n
143
ASP
484
A
GLU
485
n
144
GLU
485
A
PHE
486
n
145
PHE
486
A
PHE
487
n
146
PHE
487
A
SER
488
n
147
SER
488
A
GLN
489
n
148
GLN
489
A
SER
490
n
149
SER
490
A
CYS
491
n
150
CYS
491
A
ALA
492
n
151
ALA
492
A
PRO
493
n
152
PRO
493
A
GLY
494
n
153
GLY
494
A
ALA
495
n
154
ALA
495
A
ASP
496
n
155
ASP
496
A
PRO
497
n
156
PRO
497
A
LYS
498
n
157
LYS
498
A
SER
499
n
158
SER
499
A
ARG
500
n
159
ARG
500
A
LEU
501
n
160
LEU
501
A
CYS
502
n
161
CYS
502
A
ALA
503
n
162
ALA
503
A
LEU
504
n
163
LEU
504
A
CYS
505
n
164
CYS
505
A
ALA
506
n
165
ALA
506
A
GLY
507
n
166
GLY
507
A
ASP
508
n
167
ASP
508
A
ASP
509
n
168
ASP
509
A
GLN
510
n
169
GLN
510
A
GLY
511
n
170
GLY
511
A
LEU
512
n
171
LEU
512
A
ASP
513
n
172
ASP
513
A
LYS
514
n
173
LYS
514
A
CYS
515
n
174
CYS
515
A
VAL
516
n
175
VAL
516
A
PRO
517
n
176
PRO
517
A
ASN
518
n
177
ASN
518
A
SER
519
n
178
SER
519
A
LYS
520
n
179
LYS
520
A
GLU
521
n
180
GLU
521
A
LYS
522
n
181
LYS
522
A
TYR
523
n
182
TYR
523
A
TYR
524
n
183
TYR
524
A
GLY
525
n
184
GLY
525
A
TYR
526
n
185
TYR
526
A
THR
527
n
186
THR
527
A
GLY
528
n
187
GLY
528
A
ALA
529
n
188
ALA
529
A
PHE
530
n
189
PHE
530
A
ARG
531
n
190
ARG
531
A
CYS
532
n
191
CYS
532
A
LEU
533
n
192
LEU
533
A
ALA
534
n
193
ALA
534
A
GLU
535
n
194
GLU
535
A
ASP
536
n
195
ASP
536
A
VAL
537
n
196
VAL
537
A
GLY
538
n
197
GLY
538
A
ASP
539
n
198
ASP
539
A
VAL
540
n
199
VAL
540
A
ALA
541
n
200
ALA
541
A
PHE
542
n
201
PHE
542
A
VAL
543
n
202
VAL
543
A
LYS
544
n
203
LYS
544
A
ASN
545
n
204
ASN
545
A
ASP
546
n
205
ASP
546
A
THR
547
n
206
THR
547
A
VAL
548
n
207
VAL
548
A
TRP
549
n
208
TRP
549
A
GLU
550
n
209
GLU
550
A
ASN
551
n
210
ASN
551
A
THR
552
n
211
THR
552
A
ASN
553
n
212
ASN
553
A
GLY
554
n
213
GLY
554
A
GLU
555
n
214
GLU
555
A
SER
556
n
215
SER
556
A
THR
557
n
216
THR
557
A
ALA
558
n
217
ALA
558
A
ASP
559
n
218
ASP
559
A
TRP
560
n
219
TRP
560
A
ALA
561
n
220
ALA
561
A
LYS
562
n
221
LYS
562
A
ASN
563
n
222
ASN
563
A
LEU
564
n
223
LEU
564
A
LYS
565
n
224
LYS
565
A
ARG
566
n
225
ARG
566
A
GLU
567
n
226
GLU
567
A
ASP
568
n
227
ASP
568
A
PHE
569
n
228
PHE
569
A
ARG
570
n
229
ARG
570
A
LEU
571
n
230
LEU
571
A
LEU
572
n
231
LEU
572
A
CYS
573
n
232
CYS
573
A
LEU
574
n
233
LEU
574
A
ASP
575
n
234
ASP
575
A
GLY
576
n
235
GLY
576
A
THR
577
n
236
THR
577
A
ARG
578
n
237
ARG
578
A
LYS
579
n
238
LYS
579
A
PRO
580
n
239
PRO
580
A
VAL
581
n
240
VAL
581
A
THR
582
n
241
THR
582
A
GLU
583
n
242
GLU
583
A
ALA
584
n
243
ALA
584
A
GLN
585
n
244
GLN
585
A
SER
586
n
245
SER
586
A
CYS
587
n
246
CYS
587
A
HIS
588
n
247
HIS
588
A
LEU
589
n
248
LEU
589
A
ALA
590
n
249
ALA
590
A
VAL
591
n
250
VAL
591
A
ALA
592
n
251
ALA
592
A
PRO
593
n
252
PRO
593
A
ASN
594
n
253
ASN
594
A
HIS
595
n
254
HIS
595
A
ALA
596
n
255
ALA
596
A
VAL
597
n
256
VAL
597
A
VAL
598
n
257
VAL
598
A
SER
599
n
258
SER
599
A
ARG
600
n
259
ARG
600
A
SER
601
n
260
SER
601
A
ASP
602
n
261
ASP
602
A
ARG
603
n
262
ARG
603
A
ALA
604
n
263
ALA
604
A
ALA
605
n
264
ALA
605
A
HIS
606
n
265
HIS
606
A
VAL
607
n
266
VAL
607
A
GLU
608
n
267
GLU
608
A
GLN
609
n
268
GLN
609
A
VAL
610
n
269
VAL
610
A
LEU
611
n
270
LEU
611
A
LEU
612
n
271
LEU
612
A
HIS
613
n
272
HIS
613
A
GLN
614
n
273
GLN
614
A
GLN
615
n
274
GLN
615
A
ALA
616
n
275
ALA
616
A
LEU
617
n
276
LEU
617
A
PHE
618
n
277
PHE
618
A
GLY
619
n
278
GLY
619
A
LYS
620
n
279
LYS
620
A
ASN
621
n
280
ASN
621
A
GLY
622
n
281
GLY
622
A
LYS
623
n
282
LYS
623
A
ASN
624
n
283
ASN
624
A
CYS
625
n
284
CYS
625
A
PRO
626
n
285
PRO
626
A
ASP
627
n
286
ASP
627
A
LYS
628
n
287
LYS
628
A
PHE
629
n
288
PHE
629
A
CYS
630
n
289
CYS
630
A
LEU
631
n
290
LEU
631
A
PHE
632
n
291
PHE
632
A
LYS
633
n
292
LYS
633
A
SER
634
n
293
SER
634
A
GLU
635
n
294
GLU
635
A
THR
636
n
295
THR
636
A
LYS
637
n
296
LYS
637
A
ASN
638
n
297
ASN
638
A
LEU
639
n
298
LEU
639
A
LEU
640
n
299
LEU
640
A
PHE
641
n
300
PHE
641
A
ASN
642
n
301
ASN
642
A
ASP
643
n
302
ASP
643
A
ASN
644
n
303
ASN
644
A
THR
645
n
304
THR
645
A
GLU
646
n
305
GLU
646
A
CYS
647
n
306
CYS
647
A
LEU
648
n
307
LEU
648
A
ALA
649
n
308
ALA
649
A
LYS
650
n
309
LYS
650
A
LEU
651
n
310
LEU
651
A
GLY
652
n
311
GLY
652
A
GLY
653
n
312
GLY
653
A
ARG
654
n
313
ARG
654
A
PRO
655
n
314
PRO
655
A
THR
656
n
315
THR
656
A
TYR
657
n
316
TYR
657
A
GLU
658
n
317
GLU
658
A
GLU
659
n
318
GLU
659
A
TYR
660
n
319
TYR
660
A
LEU
661
n
320
LEU
661
A
GLY
662
n
321
GLY
662
A
THR
663
n
322
THR
663
A
GLU
664
n
323
GLU
664
A
TYR
665
n
324
TYR
665
A
VAL
666
n
325
VAL
666
A
THR
667
n
326
THR
667
A
ALA
668
n
327
ALA
668
A
ILE
669
n
328
ILE
669
A
ALA
670
n
329
ALA
670
A
ASN
671
n
330
ASN
671
A
LEU
672
n
331
LEU
672
A
LYS
673
n
332
LYS
673
A
LYS
674
n
333
LYS
674
A
CYS
675
n
334
CYS
675
A
SER
676
n
335
SER
676
A
n
336
677
A
n
337
678
A
n
338
679
A
n
339
680
A
LEU
681
n
340
LEU
681
A
GLU
682
n
341
GLU
682
A
ALA
683
n
342
ALA
683
A
CYS
684
n
343
CYS
684
A
ALA
685
n
344
ALA
685
A
PHE
686
n
345
PHE
686
A
author_and_software_defined_assembly
PISA
1
monomeric
A
HOH
157
K
O
HOH
1_555
A
ZN
302
F
ZN
ZN
1_555
A
GLU
659
A
OE2
GLU
318
1_555
92.4
A
HOH
157
K
O
HOH
1_555
A
ZN
302
F
ZN
ZN
1_555
A
GLU
659
A
OE1
GLU
318
1_555
98.7
A
GLU
659
A
OE2
GLU
318
1_555
A
ZN
302
F
ZN
ZN
1_555
A
GLU
659
A
OE1
GLU
318
1_555
60.2
A
HIS
588
A
NE2
HIS
247
1_555
A
ZN
303
G
ZN
ZN
1_555
A
HOH
689
K
O
HOH
1_555
93.4
A
ASP
395
A
OD1
ASP
54
1_555
A
FE
690
H
FE
FE
1_555
A
TYR
433
A
OH
TYR
92
1_555
87.3
A
ASP
395
A
OD1
ASP
54
1_555
A
FE
690
H
FE
FE
1_555
A
TYR
526
A
OH
TYR
185
1_555
173.1
A
TYR
433
A
OH
TYR
92
1_555
A
FE
690
H
FE
FE
1_555
A
TYR
526
A
OH
TYR
185
1_555
96.2
A
ASP
395
A
OD1
ASP
54
1_555
A
FE
690
H
FE
FE
1_555
A
HIS
595
A
NE2
HIS
254
1_555
89.1
A
TYR
433
A
OH
TYR
92
1_555
A
FE
690
H
FE
FE
1_555
A
HIS
595
A
NE2
HIS
254
1_555
96.8
A
TYR
526
A
OH
TYR
185
1_555
A
FE
690
H
FE
FE
1_555
A
HIS
595
A
NE2
HIS
254
1_555
84.6
A
ASP
395
A
OD1
ASP
54
1_555
A
FE
690
H
FE
FE
1_555
A
CO3
691
I
O2
CO3
1_555
91.3
A
TYR
433
A
OH
TYR
92
1_555
A
FE
690
H
FE
FE
1_555
A
CO3
691
I
O2
CO3
1_555
94.2
A
TYR
526
A
OH
TYR
185
1_555
A
FE
690
H
FE
FE
1_555
A
CO3
691
I
O2
CO3
1_555
94.4
A
HIS
595
A
NE2
HIS
254
1_555
A
FE
690
H
FE
FE
1_555
A
CO3
691
I
O2
CO3
1_555
169.0
A
ASP
395
A
OD1
ASP
54
1_555
A
FE
690
H
FE
FE
1_555
A
CO3
691
I
O1
CO3
1_555
89.4
A
TYR
433
A
OH
TYR
92
1_555
A
FE
690
H
FE
FE
1_555
A
CO3
691
I
O1
CO3
1_555
156.2
A
TYR
526
A
OH
TYR
185
1_555
A
FE
690
H
FE
FE
1_555
A
CO3
691
I
O1
CO3
1_555
89.8
A
HIS
595
A
NE2
HIS
254
1_555
A
FE
690
H
FE
FE
1_555
A
CO3
691
I
O1
CO3
1_555
106.7
A
CO3
691
I
O2
CO3
1_555
A
FE
690
H
FE
FE
1_555
A
CO3
691
I
O1
CO3
1_555
62.3
A
ASN
476
GLYCOSYLATION SITE
A
ASN
135
ASN
A
ASN
368
GLYCOSYLATION SITE
A
ASN
27
ASN
A
ASN
545
GLYCOSYLATION SITE
A
ASN
204
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TRP
347
A
N
TRP
6
A
O
THR
370
A
O
THR
29
A
N
LEU
394
A
N
LEU
53
A
O
ALA
596
A
O
ALA
255
A
O
VAL
597
A
O
VAL
256
A
N
VAL
410
A
N
VAL
69
A
N
ALA
412
A
N
ALA
71
A
O
ALA
649
A
O
ALA
308
A
O
CYS
491
A
O
CYS
150
A
N
HIS
458
A
N
HIS
117
A
N
CYS
457
A
N
CYS
116
A
O
PHE
542
A
O
PHE
201
A
O
ALA
541
A
O
ALA
200
A
N
VAL
438
A
N
VAL
97
A
N
VAL
439
A
N
VAL
98
A
O
ARG
570
A
O
ARG
229
A
N
LEU
571
A
N
LEU
230
A
O
LYS
579
A
O
LYS
238
A
O
CYS
491
A
O
CYS
150
A
N
HIS
458
A
N
HIS
117
A
N
CYS
457
A
N
CYS
116
A
O
PHE
542
A
O
PHE
201
A
O
ALA
541
A
O
ALA
200
A
N
VAL
438
A
N
VAL
97
A
N
TYR
433
A
N
TYR
92
A
O
ALA
592
A
O
ALA
251
1
A
THR
677
A
THR
336
1
Y
1
A
SER
678
A
SER
337
1
Y
1
A
PRO
679
A
PRO
338
1
Y
1
A
LEU
680
A
LEU
339
1
Y
1
A
TRP
467
-134.97
-60.01
1
A
ALA
482
-79.88
48.82
1
A
SER
634
-145.55
21.04
1
A
LEU
640
75.44
-49.79
1
A
GLU
682
-163.34
76.63
26.934
0.90
0.00
-1.15
-1.01
0.00
-0.55
0.953
0.943
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.22329
0.20182
0.20310
0.20293
1.70
50.0
2082
41412
39257
5.0
99.58
2.119
0.071
RANDOM
1
RESTRAINED
THROUGHOUT
MOLECULAR REPLACEMENT
0.106
0.80
0.80
1.40
3O97
MAXIMUM LIKELIHOOD
MASK
1.70
50.0
224
2927
99
0
2604
0.006
0.022
2762
1.099
1.988
3751
5.702
5.000
339
37.863
25.169
118
14.161
15.000
448
16.621
15.000
12
0.070
0.200
423
0.003
0.021
2065
0.663
1.500
1692
1.243
2.000
2699
1.171
3.000
1070
2.091
4.500
1052
0.287
0.273
1.746
139
2757
20
96.37
20.2
1.70
62.35
3TAJ
41412
41412
0.0
0.0
0.047
1
27.0
99.8
1.70
1.73
2.3
0.325
1
97.2
data collection
HKL-2000
phasing
AMoRE
refinement
REFMAC
5.5.0109
data reduction
DENZO
data scaling
SCALEPACK
Crystal structure of C-lobe of bovine lactoferrin complexed with Nabumetone at 1.7A resolution
1
N
N
2
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
6
N
N
7
N
N
8
N
N
9
N
N
A
GLY
351
A
GLY
10
HELX_P
A
SER
365
A
SER
24
1
1
15
A
THR
376
A
THR
35
HELX_P
A
LYS
386
A
LYS
45
1
2
11
A
ASP
395
A
ASP
54
HELX_P
A
CYS
405
A
CYS
64
1
3
11
A
ASP
424
A
ASP
83
HELX_P
A
ARG
428
A
ARG
87
5
4
5
A
THR
447
A
THR
106
HELX_P
A
LEU
451
A
LEU
110
5
5
5
A
TRP
467
A
TRP
126
HELX_P
A
GLY
479
A
GLY
138
1
6
13
A
TYR
524
A
TYR
183
HELX_P
A
GLU
535
A
GLU
194
1
7
12
A
ASN
545
A
ASN
204
HELX_P
A
ASN
551
A
ASN
210
1
8
7
A
LYS
565
A
LYS
224
HELX_P
A
GLU
567
A
GLU
226
5
9
3
A
THR
582
A
THR
241
HELX_P
A
CYS
587
A
CYS
246
5
10
6
A
ARG
603
A
ARG
262
HELX_P
A
GLY
619
A
GLY
278
1
11
17
A
THR
656
A
THR
315
HELX_P
A
GLY
662
A
GLY
321
1
12
7
A
GLY
662
A
GLY
321
HELX_P
A
LYS
674
A
LYS
333
1
13
13
disulf
2.031
A
CYS
348
A
SG
CYS
7
1_555
A
CYS
380
A
SG
CYS
39
1_555
disulf
2.029
A
CYS
358
A
SG
CYS
17
1_555
A
CYS
371
A
SG
CYS
30
1_555
disulf
2.035
A
CYS
405
A
SG
CYS
64
1_555
A
CYS
684
A
SG
CYS
343
1_555
disulf
2.028
A
CYS
425
A
SG
CYS
84
1_555
A
CYS
647
A
SG
CYS
306
1_555
disulf
2.031
A
CYS
457
A
SG
CYS
116
1_555
A
CYS
532
A
SG
CYS
191
1_555
disulf
2.032
A
CYS
481
A
SG
CYS
140
1_555
A
CYS
675
A
SG
CYS
334
1_555
disulf
2.041
A
CYS
491
A
SG
CYS
150
1_555
A
CYS
505
A
SG
CYS
164
1_555
disulf
2.019
A
CYS
502
A
SG
CYS
161
1_555
A
CYS
515
A
SG
CYS
174
1_555
disulf
2.035
A
CYS
573
A
SG
CYS
232
1_555
A
CYS
587
A
SG
CYS
246
1_555
disulf
2.035
A
CYS
625
A
SG
CYS
284
1_555
A
CYS
630
A
SG
CYS
289
1_555
covale
1.432
one
N-Glycosylation
A
NAG
1
E
C1
NAG
1_555
A
ASN
368
A
ND2
ASN
27
1_555
covale
1.430
one
N-Glycosylation
A
ASN
476
A
ND2
ASN
135
1_555
B
NAG
1
B
C1
NAG
1_555
covale
1.436
one
N-Glycosylation
A
ASN
545
A
ND2
ASN
204
1_555
C
NAG
1
C
C1
NAG
1_555
covale
1.446
both
B
NAG
1
B
O4
NAG
1_555
B
NAG
2
B
C1
NAG
1_555
covale
1.444
both
C
NAG
1
C
O4
NAG
1_555
C
NAG
2
C
C1
NAG
1_555
metalc
2.064
A
HOH
157
K
O
HOH
1_555
A
ZN
302
F
ZN
ZN
1_555
metalc
2.119
A
ZN
302
F
ZN
ZN
1_555
A
GLU
659
A
OE2
GLU
318
1_555
metalc
2.257
A
ZN
302
F
ZN
ZN
1_555
A
GLU
659
A
OE1
GLU
318
1_555
metalc
2.046
A
ZN
303
G
ZN
ZN
1_555
A
HIS
588
A
NE2
HIS
247
1_555
metalc
2.258
A
ZN
303
G
ZN
ZN
1_555
A
HOH
689
K
O
HOH
1_555
metalc
2.094
A
ASP
395
A
OD1
ASP
54
1_555
A
FE
690
H
FE
FE
1_555
metalc
2.005
A
TYR
433
A
OH
TYR
92
1_555
A
FE
690
H
FE
FE
1_555
metalc
2.001
A
TYR
526
A
OH
TYR
185
1_555
A
FE
690
H
FE
FE
1_555
metalc
2.212
A
HIS
595
A
NE2
HIS
254
1_555
A
FE
690
H
FE
FE
1_555
metalc
2.113
A
FE
690
H
FE
FE
1_555
A
CO3
691
I
O2
CO3
1_555
metalc
2.209
A
FE
690
H
FE
FE
1_555
A
CO3
691
I
O1
CO3
1_555
HYDROLASE
C-lobe, Lactoferrin, NSAIDs, Nabumetone, HYDROLASE
A
CYS
625
A
CYS
284
1
A
PRO
626
A
PRO
285
8.96
TRFL_BOVIN
UNP
1
361
P24627
YTRVVWCAVGPEEQKKCQQWSQQSGQNVTCATASTTDDCIVLVLKGEADALNLDGGYIYTAGKCGLVPVLAENRKSSKHS
SLDCVLRPTEGYLAVAVVKKANEGLTWNSLKDKKSCHTAVDRTAGWNIPMGLIVNQTGSCAFDEFFSQSCAPGADPKSRL
CALCAGDDQGLDKCVPNSKEKYYGYTGAFRCLAEDVGDVAFVKNDTVWENTNGESTADWAKNLNREDFRLLCLDGTRKPV
TEAQSCHLAVAPNHAVVSRSDRAAHVKQVLLHQQALFGKNGKNCPDKFCLFKSETKNLLFNDNTECLAKLGGRPTYEEYL
GTEYVTAIANLKKCSTSPLLEACAF
361
705
3TAJ
342
686
P24627
A
1
1
345
1
ASN
SEE REMARK 999
LYS
565
3TAJ
A
P24627
UNP
584
224
1
LYS
SEE REMARK 999
GLU
608
3TAJ
A
P24627
UNP
627
267
2
4
6
5
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
A
VAL
345
A
VAL
4
A
VAL
350
A
VAL
9
A
VAL
369
A
VAL
28
A
ALA
374
A
ALA
33
A
ALA
391
A
ALA
50
A
LEU
394
A
LEU
53
A
ALA
596
A
ALA
255
A
ARG
600
A
ARG
259
A
LEU
407
A
LEU
66
A
ASN
414
A
ASN
73
A
CYS
647
A
CYS
306
A
ALA
649
A
ALA
308
A
GLN
489
A
GLN
148
A
CYS
491
A
CYS
150
A
LYS
455
A
LYS
114
A
HIS
458
A
HIS
117
A
VAL
540
A
VAL
199
A
LYS
544
A
LYS
203
A
TYR
433
A
TYR
92
A
LYS
440
A
LYS
99
A
PHE
569
A
PHE
228
A
LEU
572
A
LEU
231
A
ARG
578
A
ARG
237
A
PRO
580
A
PRO
239
A
GLN
489
A
GLN
148
A
CYS
491
A
CYS
150
A
LYS
455
A
LYS
114
A
HIS
458
A
HIS
117
A
VAL
540
A
VAL
199
A
LYS
544
A
LYS
203
A
TYR
433
A
TYR
92
A
LYS
440
A
LYS
99
A
ALA
590
A
ALA
249
A
ALA
592
A
ALA
251
4
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