0.020653 0.000000 0.000000 0.000000 0.020653 0.000000 0.000000 0.000000 0.007639 0.00000 0.00000 0.00000 Yu, X. Blanchard, H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 48.420 48.420 130.910 C10 H22 O6 238.278 PENTAETHYLENE GLYCOL PEG400 non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C12 H21 N O10 339.296 n methyl 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid methyl 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-alpha-D-galacto-non-2-ulosidonic acid; methyl 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-D-galacto-non-2-ulosidonic acid; methyl 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-galacto-non-2-ulosidonic acid D-saccharide C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N O N 2 N C N 3 N C N 4 N O N 5 N C N 6 N C N 7 N O N 8 N C N 9 N C N 10 N O N 11 N C N 12 N C N 13 N O N 14 N C N 15 N C N 16 N O N 17 N H N 18 N H N 19 N H N 20 N H N 21 N H N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N N N 40 S C N 41 N C N 42 N O N 43 N C N 44 N O N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N N N 53 S C N 54 N C N 55 N O N 56 N C N 57 N C N 58 N C N 59 N N N 60 N C N 61 N N N 62 N N N 63 N O N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N N N 80 S C N 81 N C N 82 N O N 83 N C N 84 N C N 85 N O N 86 N N N 87 N O N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N N N 97 S C N 98 N C N 99 N O N 100 N C N 101 N C N 102 N O N 103 N O N 104 N O N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N N N 113 R C N 114 N C N 115 N O N 116 N C N 117 N S N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N N N 127 S C N 128 N C N 129 N O N 130 N C N 131 N C N 132 N C N 133 N O N 134 N N N 135 N O N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N N N 147 S C N 148 N C N 149 N O N 150 N C N 151 N C N 152 N C N 153 N O N 154 N O N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N N N 166 N C N 167 N C N 168 N O N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N C N 176 N O N 177 N C N 178 N O N 179 N C N 180 N O N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N N N 190 S C N 191 N C N 192 N O N 193 N C Y 194 N C Y 195 N N Y 196 N C Y 197 N C Y 198 N N N 199 N O N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N O N 211 N H N 212 N H N 213 N N N 214 S C N 215 N C N 216 N O N 217 S C N 218 N C N 219 N C N 220 N C N 221 N O N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N N N 236 S C N 237 N C N 238 N O N 239 N C N 240 N C N 241 N C N 242 N C N 243 N O N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N N N 258 S C N 259 N C N 260 N O N 261 N C N 262 N C N 263 N C N 264 N C N 265 N N N 266 N O N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N N N 283 S C N 284 N C N 285 N O N 286 N C N 287 N C N 288 N S N 289 N C N 290 N O N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N C N 303 R C N 304 N O N 305 N C N 306 S C N 307 N O N 308 R C N 309 N N N 310 R C N 311 N O N 312 R C N 313 N O N 314 R C N 315 N O N 316 N C N 317 N O N 318 N C N 319 N O N 320 N C N 321 N O N 322 N C N 323 N O N 324 N O N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N N N 347 S C N 348 N C N 349 N O N 350 N C Y 351 N C Y 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N N N 370 S C N 371 N C N 372 N O N 373 N C N 374 N C N 375 N C N 376 N O N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N N N 387 S C N 388 N C N 389 N O N 390 N C N 391 N O N 392 N O N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N N N 401 S C N 402 N C N 403 N O N 404 R C N 405 N O N 406 N C N 407 N O N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N N N 418 S C N 419 N C N 420 N O N 421 N C Y 422 N C Y 423 N C Y 424 N C Y 425 N N Y 426 N C Y 427 N C Y 428 N C Y 429 N C Y 430 N C N 431 N O N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N N N 445 S C N 446 N C N 447 N O N 448 N C Y 449 N C Y 450 N C Y 451 N C Y 452 N C Y 453 N C Y 454 N C N 455 N O N 456 N O N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N N N 469 S C N 470 N C N 471 N O N 472 N C N 473 N C N 474 N C N 475 N O N 476 N H N 477 N H N 478 N H N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N doub N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N doub N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N doub N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N doub N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N doub N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N doub N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N doub N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N doub N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N doub N 186 N sing N 187 N sing N 188 N sing N 189 N sing Y 190 N sing Y 191 N doub Y 192 N doub N 193 N sing Y 194 N sing N 195 N sing Y 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N doub N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N doub N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N doub N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N doub N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N doub N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N doub N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N doub N 338 N sing N 339 N sing N 340 N sing N 341 N sing Y 342 N doub Y 343 N sing Y 344 N sing N 345 N sing Y 346 N doub N 347 N sing Y 348 N doub N 349 N sing Y 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N doub N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N doub N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N doub N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N doub N 407 N sing N 408 N sing N 409 N sing N 410 N sing Y 411 N doub Y 412 N sing Y 413 N sing N 414 N sing Y 415 N doub Y 416 N sing Y 417 N sing N 418 N sing Y 419 N sing Y 420 N doub N 421 N sing Y 422 N doub N 423 N sing Y 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N doub N 435 N sing N 436 N sing N 437 N sing N 438 N sing Y 439 N doub Y 440 N sing Y 441 N sing N 442 N sing Y 443 N doub N 444 N sing Y 445 N doub N 446 N sing Y 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N doub N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing US J.Virol. JOVIAM 0825 0022-538X 86 13456 13466 10.1128/JVI.06975-11 23035213 Structural Basis of Rotavirus Strain Preference toward N-Acetyl- or N-Glycolylneuraminic Acid-Containing Receptors. 2012 10.2210/pdb3tb0/pdb pdb_00003tb0 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M x-ray 1 1.0 ROTATING ANODE OTHER 18156.062 Outer capsid protein VP4 1 man polymer 339.296 methyl 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid 1 man non-polymer 92.094 GLYCEROL 2 syn non-polymer 238.278 PENTAETHYLENE GLYCOL 1 syn non-polymer 18.015 water 216 nat water Hemagglutinin, Outer capsid protein VP8*, Outer capsid protein VP5* no no VLDGPYQPTTFNPPVDYWMLLAPTAAGVVVEGTNNTDRWLATILVEPNVTSETRSYTLFGTQEQITIANASQTQWKFIDV VKTTQNGSYSQYGPLQSTPKLYAVMKHNGKIYTYNGETPNVTTKYYSTTNYDSVNMTAFCDFYIIPREEESTCTEYINNG L VLDGPYQPTTFNPPVDYWMLLAPTAAGVVVEGTNNTDRWLATILVEPNVTSETRSYTLFGTQEQITIANASQTQWKFIDV VKTTQNGSYSQYGPLQSTPKLYAVMKHNGKIYTYNGETPNVTTKYYSTTNYDSVNMTAFCDFYIIPREEESTCTEYINNG L A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n RV-A Monkey/United States/RRV/1980 G3-P5B[3]-I2-R2-C3-M3-A9-Nx-T3-E3-H6 sample 10969 Rhesus rotavirus 469008 Escherichia coli BL21(DE3) PLASMID P-GEX 2.11 41.79 chem_comp pdbx_chem_comp_identifier struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 repository Initial release Carbohydrate remediation repository Remediation Database references Data collection Derived calculations Data collection Database references Structure summary 1 0 2012-10-17 1 1 2012-12-05 1 2 2020-07-29 1 3 2024-02-28 _chem_comp.mon_nstd_flag _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession 2-O-methyl-5-N-glycolyl-a-D-neuraminic acid RCSB Y RCSB 2011-08-04 REL REL MN0 methyl 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid GOL GLYCEROL 1PE PENTAETHYLENE GLYCOL HOH water THE PREDICTED AMINO ACID SEQUENCE OF PGEXRRV-VP8* AT POSITION 73 WAS IDENTICAL WITH THAT OF THE PUBLISHED RRV VP4 SEQUENCE (ACCESSION NUMBER AY033150, ENTREZ DATABASE). MNO 1000 2 MN0 MN0 301 A GOL 2000 3 GOL GOL 302 A GOL 1 3 GOL GOL 303 A 1PE 339 4 1PE 1PE 304 A HOH 1 5 HOH HOH 401 A HOH 2 5 HOH HOH 402 A HOH 3 5 HOH HOH 403 A HOH 4 5 HOH HOH 404 A HOH 5 5 HOH HOH 405 A HOH 6 5 HOH HOH 406 A HOH 7 5 HOH HOH 407 A HOH 8 5 HOH HOH 408 A HOH 9 5 HOH HOH 409 A HOH 10 5 HOH HOH 410 A HOH 11 5 HOH HOH 411 A HOH 12 5 HOH HOH 412 A HOH 13 5 HOH HOH 413 A HOH 14 5 HOH HOH 414 A HOH 15 5 HOH HOH 415 A HOH 16 5 HOH HOH 416 A HOH 17 5 HOH HOH 417 A HOH 18 5 HOH HOH 418 A HOH 19 5 HOH HOH 419 A HOH 20 5 HOH HOH 420 A HOH 21 5 HOH HOH 421 A HOH 22 5 HOH HOH 422 A HOH 23 5 HOH HOH 423 A HOH 24 5 HOH HOH 424 A HOH 25 5 HOH HOH 425 A HOH 26 5 HOH HOH 426 A HOH 27 5 HOH HOH 427 A HOH 28 5 HOH HOH 428 A HOH 29 5 HOH HOH 429 A HOH 30 5 HOH HOH 430 A HOH 31 5 HOH HOH 431 A HOH 32 5 HOH HOH 432 A HOH 33 5 HOH HOH 433 A HOH 34 5 HOH HOH 434 A HOH 35 5 HOH HOH 435 A HOH 36 5 HOH HOH 436 A HOH 37 5 HOH HOH 437 A HOH 38 5 HOH HOH 438 A HOH 39 5 HOH HOH 439 A HOH 40 5 HOH HOH 440 A HOH 41 5 HOH HOH 441 A HOH 42 5 HOH HOH 442 A HOH 43 5 HOH HOH 443 A HOH 44 5 HOH HOH 444 A HOH 45 5 HOH HOH 445 A HOH 46 5 HOH HOH 446 A HOH 47 5 HOH HOH 447 A HOH 48 5 HOH HOH 448 A HOH 49 5 HOH HOH 449 A HOH 50 5 HOH HOH 450 A HOH 51 5 HOH HOH 451 A HOH 52 5 HOH HOH 452 A HOH 53 5 HOH HOH 453 A HOH 54 5 HOH HOH 454 A HOH 55 5 HOH HOH 455 A HOH 56 5 HOH HOH 456 A HOH 57 5 HOH HOH 457 A HOH 58 5 HOH HOH 458 A HOH 59 5 HOH HOH 459 A HOH 60 5 HOH HOH 460 A HOH 61 5 HOH HOH 461 A HOH 62 5 HOH HOH 462 A HOH 63 5 HOH HOH 463 A HOH 64 5 HOH HOH 464 A HOH 65 5 HOH HOH 465 A HOH 66 5 HOH HOH 466 A HOH 67 5 HOH HOH 467 A HOH 68 5 HOH HOH 468 A HOH 69 5 HOH HOH 469 A HOH 70 5 HOH HOH 470 A HOH 71 5 HOH HOH 471 A HOH 72 5 HOH HOH 472 A HOH 73 5 HOH HOH 473 A HOH 74 5 HOH HOH 474 A HOH 75 5 HOH HOH 475 A HOH 76 5 HOH HOH 476 A HOH 77 5 HOH HOH 477 A HOH 78 5 HOH HOH 478 A HOH 79 5 HOH HOH 479 A HOH 80 5 HOH HOH 480 A HOH 81 5 HOH HOH 481 A HOH 82 5 HOH HOH 482 A HOH 83 5 HOH HOH 483 A HOH 84 5 HOH HOH 484 A HOH 85 5 HOH HOH 485 A HOH 86 5 HOH HOH 486 A HOH 87 5 HOH HOH 487 A HOH 88 5 HOH HOH 488 A HOH 89 5 HOH HOH 489 A HOH 90 5 HOH HOH 490 A HOH 91 5 HOH HOH 491 A HOH 92 5 HOH HOH 492 A HOH 93 5 HOH HOH 493 A HOH 94 5 HOH HOH 494 A HOH 95 5 HOH HOH 495 A HOH 96 5 HOH HOH 496 A HOH 97 5 HOH HOH 497 A HOH 98 5 HOH HOH 498 A HOH 99 5 HOH HOH 499 A HOH 100 5 HOH HOH 500 A HOH 101 5 HOH HOH 501 A HOH 102 5 HOH HOH 502 A HOH 103 5 HOH HOH 503 A HOH 104 5 HOH HOH 504 A HOH 105 5 HOH HOH 505 A HOH 106 5 HOH HOH 506 A HOH 107 5 HOH HOH 507 A HOH 108 5 HOH HOH 508 A HOH 109 5 HOH HOH 509 A HOH 110 5 HOH HOH 510 A HOH 111 5 HOH HOH 511 A HOH 112 5 HOH HOH 512 A HOH 113 5 HOH HOH 513 A HOH 114 5 HOH HOH 514 A HOH 115 5 HOH HOH 515 A HOH 116 5 HOH HOH 516 A HOH 117 5 HOH HOH 517 A HOH 118 5 HOH HOH 518 A HOH 119 5 HOH HOH 519 A HOH 120 5 HOH HOH 520 A HOH 121 5 HOH HOH 521 A HOH 122 5 HOH HOH 522 A HOH 123 5 HOH HOH 523 A HOH 124 5 HOH HOH 524 A HOH 125 5 HOH HOH 525 A HOH 126 5 HOH HOH 526 A HOH 127 5 HOH HOH 527 A HOH 128 5 HOH HOH 528 A HOH 129 5 HOH HOH 529 A HOH 130 5 HOH HOH 530 A HOH 131 5 HOH HOH 531 A HOH 132 5 HOH HOH 532 A HOH 133 5 HOH HOH 533 A HOH 134 5 HOH HOH 534 A HOH 135 5 HOH HOH 535 A HOH 136 5 HOH HOH 536 A HOH 137 5 HOH HOH 537 A HOH 138 5 HOH HOH 538 A HOH 139 5 HOH HOH 539 A HOH 140 5 HOH HOH 540 A HOH 141 5 HOH HOH 541 A HOH 142 5 HOH HOH 542 A HOH 143 5 HOH HOH 543 A HOH 144 5 HOH HOH 544 A HOH 145 5 HOH HOH 545 A HOH 146 5 HOH HOH 546 A HOH 147 5 HOH HOH 547 A HOH 148 5 HOH HOH 548 A HOH 149 5 HOH HOH 549 A HOH 150 5 HOH HOH 550 A HOH 151 5 HOH HOH 551 A HOH 152 5 HOH HOH 552 A HOH 153 5 HOH HOH 553 A HOH 154 5 HOH HOH 554 A HOH 155 5 HOH HOH 555 A HOH 156 5 HOH HOH 556 A HOH 157 5 HOH HOH 557 A HOH 158 5 HOH HOH 558 A HOH 159 5 HOH HOH 559 A HOH 160 5 HOH HOH 560 A HOH 161 5 HOH HOH 561 A HOH 162 5 HOH HOH 562 A HOH 163 5 HOH HOH 563 A HOH 164 5 HOH HOH 564 A HOH 165 5 HOH HOH 565 A HOH 166 5 HOH HOH 566 A HOH 167 5 HOH HOH 567 A HOH 168 5 HOH HOH 568 A HOH 169 5 HOH HOH 569 A HOH 170 5 HOH HOH 570 A HOH 171 5 HOH HOH 571 A HOH 172 5 HOH HOH 572 A HOH 173 5 HOH HOH 573 A HOH 174 5 HOH HOH 574 A HOH 175 5 HOH HOH 575 A HOH 176 5 HOH HOH 576 A HOH 177 5 HOH HOH 577 A HOH 178 5 HOH HOH 578 A HOH 179 5 HOH HOH 579 A HOH 180 5 HOH HOH 580 A HOH 181 5 HOH HOH 581 A HOH 182 5 HOH HOH 582 A HOH 183 5 HOH HOH 583 A HOH 184 5 HOH HOH 584 A HOH 185 5 HOH HOH 585 A HOH 186 5 HOH HOH 586 A HOH 187 5 HOH HOH 587 A HOH 188 5 HOH HOH 588 A HOH 189 5 HOH HOH 589 A HOH 190 5 HOH HOH 590 A HOH 191 5 HOH HOH 591 A HOH 192 5 HOH HOH 592 A HOH 193 5 HOH HOH 593 A HOH 194 5 HOH HOH 594 A HOH 195 5 HOH HOH 595 A HOH 196 5 HOH HOH 596 A HOH 197 5 HOH HOH 597 A HOH 198 5 HOH HOH 598 A HOH 199 5 HOH HOH 599 A HOH 200 5 HOH HOH 600 A HOH 201 5 HOH HOH 601 A HOH 202 5 HOH HOH 602 A HOH 203 5 HOH HOH 603 A HOH 204 5 HOH HOH 604 A HOH 205 5 HOH HOH 605 A HOH 206 5 HOH HOH 606 A HOH 207 5 HOH HOH 607 A HOH 208 5 HOH HOH 608 A HOH 209 5 HOH HOH 609 A HOH 210 5 HOH HOH 610 A HOH 211 5 HOH HOH 611 A HOH 212 5 HOH HOH 612 A HOH 213 5 HOH HOH 613 A HOH 214 5 HOH HOH 614 A HOH 215 5 HOH HOH 615 A HOH 216 5 HOH HOH 616 A VAL 64 n 1 VAL 64 A LEU 65 n 2 LEU 65 A ASP 66 n 3 ASP 66 A GLY 67 n 4 GLY 67 A PRO 68 n 5 PRO 68 A TYR 69 n 6 TYR 69 A GLN 70 n 7 GLN 70 A PRO 71 n 8 PRO 71 A THR 72 n 9 THR 72 A THR 73 n 10 THR 73 A PHE 74 n 11 PHE 74 A ASN 75 n 12 ASN 75 A PRO 76 n 13 PRO 76 A PRO 77 n 14 PRO 77 A VAL 78 n 15 VAL 78 A ASP 79 n 16 ASP 79 A TYR 80 n 17 TYR 80 A TRP 81 n 18 TRP 81 A MET 82 n 19 MET 82 A LEU 83 n 20 LEU 83 A LEU 84 n 21 LEU 84 A ALA 85 n 22 ALA 85 A PRO 86 n 23 PRO 86 A THR 87 n 24 THR 87 A ALA 88 n 25 ALA 88 A ALA 89 n 26 ALA 89 A GLY 90 n 27 GLY 90 A VAL 91 n 28 VAL 91 A VAL 92 n 29 VAL 92 A VAL 93 n 30 VAL 93 A GLU 94 n 31 GLU 94 A GLY 95 n 32 GLY 95 A THR 96 n 33 THR 96 A ASN 97 n 34 ASN 97 A ASN 98 n 35 ASN 98 A THR 99 n 36 THR 99 A ASP 100 n 37 ASP 100 A ARG 101 n 38 ARG 101 A TRP 102 n 39 TRP 102 A LEU 103 n 40 LEU 103 A ALA 104 n 41 ALA 104 A THR 105 n 42 THR 105 A ILE 106 n 43 ILE 106 A LEU 107 n 44 LEU 107 A VAL 108 n 45 VAL 108 A GLU 109 n 46 GLU 109 A PRO 110 n 47 PRO 110 A ASN 111 n 48 ASN 111 A VAL 112 n 49 VAL 112 A THR 113 n 50 THR 113 A SER 114 n 51 SER 114 A GLU 115 n 52 GLU 115 A THR 116 n 53 THR 116 A ARG 117 n 54 ARG 117 A SER 118 n 55 SER 118 A TYR 119 n 56 TYR 119 A THR 120 n 57 THR 120 A LEU 121 n 58 LEU 121 A PHE 122 n 59 PHE 122 A GLY 123 n 60 GLY 123 A THR 124 n 61 THR 124 A GLN 125 n 62 GLN 125 A GLU 126 n 63 GLU 126 A GLN 127 n 64 GLN 127 A ILE 128 n 65 ILE 128 A THR 129 n 66 THR 129 A ILE 130 n 67 ILE 130 A ALA 131 n 68 ALA 131 A ASN 132 n 69 ASN 132 A ALA 133 n 70 ALA 133 A SER 134 n 71 SER 134 A GLN 135 n 72 GLN 135 A THR 136 n 73 THR 136 A GLN 137 n 74 GLN 137 A TRP 138 n 75 TRP 138 A LYS 139 n 76 LYS 139 A PHE 140 n 77 PHE 140 A ILE 141 n 78 ILE 141 A ASP 142 n 79 ASP 142 A VAL 143 n 80 VAL 143 A VAL 144 n 81 VAL 144 A LYS 145 n 82 LYS 145 A THR 146 n 83 THR 146 A THR 147 n 84 THR 147 A GLN 148 n 85 GLN 148 A ASN 149 n 86 ASN 149 A GLY 150 n 87 GLY 150 A SER 151 n 88 SER 151 A TYR 152 n 89 TYR 152 A SER 153 n 90 SER 153 A GLN 154 n 91 GLN 154 A TYR 155 n 92 TYR 155 A GLY 156 n 93 GLY 156 A PRO 157 n 94 PRO 157 A LEU 158 n 95 LEU 158 A GLN 159 n 96 GLN 159 A SER 160 n 97 SER 160 A THR 161 n 98 THR 161 A PRO 162 n 99 PRO 162 A LYS 163 n 100 LYS 163 A LEU 164 n 101 LEU 164 A TYR 165 n 102 TYR 165 A ALA 166 n 103 ALA 166 A VAL 167 n 104 VAL 167 A MET 168 n 105 MET 168 A LYS 169 n 106 LYS 169 A HIS 170 n 107 HIS 170 A ASN 171 n 108 ASN 171 A GLY 172 n 109 GLY 172 A LYS 173 n 110 LYS 173 A ILE 174 n 111 ILE 174 A TYR 175 n 112 TYR 175 A THR 176 n 113 THR 176 A TYR 177 n 114 TYR 177 A ASN 178 n 115 ASN 178 A GLY 179 n 116 GLY 179 A GLU 180 n 117 GLU 180 A THR 181 n 118 THR 181 A PRO 182 n 119 PRO 182 A ASN 183 n 120 ASN 183 A VAL 184 n 121 VAL 184 A THR 185 n 122 THR 185 A THR 186 n 123 THR 186 A LYS 187 n 124 LYS 187 A TYR 188 n 125 TYR 188 A TYR 189 n 126 TYR 189 A SER 190 n 127 SER 190 A THR 191 n 128 THR 191 A THR 192 n 129 THR 192 A ASN 193 n 130 ASN 193 A TYR 194 n 131 TYR 194 A ASP 195 n 132 ASP 195 A SER 196 n 133 SER 196 A VAL 197 n 134 VAL 197 A ASN 198 n 135 ASN 198 A MET 199 n 136 MET 199 A THR 200 n 137 THR 200 A ALA 201 n 138 ALA 201 A PHE 202 n 139 PHE 202 A CYS 203 n 140 CYS 203 A ASP 204 n 141 ASP 204 A PHE 205 n 142 PHE 205 A TYR 206 n 143 TYR 206 A ILE 207 n 144 ILE 207 A ILE 208 n 145 ILE 208 A PRO 209 n 146 PRO 209 A ARG 210 n 147 ARG 210 A GLU 211 n 148 GLU 211 A GLU 212 n 149 GLU 212 A GLU 213 n 150 GLU 213 A SER 214 n 151 SER 214 A THR 215 n 152 THR 215 A CYS 216 n 153 CYS 216 A THR 217 n 154 THR 217 A GLU 218 n 155 GLU 218 A TYR 219 n 156 TYR 219 A ILE 220 n 157 ILE 220 A ASN 221 n 158 ASN 221 A ASN 222 n 159 ASN 222 A GLY 223 n 160 GLY 223 A LEU 224 n 161 LEU 224 A author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TYR 69 A N TYR 6 A O PHE 205 A O PHE 142 A O ILE 208 A O ILE 145 A N TRP 81 A N TRP 18 A N LEU 84 A N LEU 21 A O TYR 165 A O TYR 102 A N MET 168 A N MET 105 A O TYR 175 A O TYR 112 A O GLY 179 A O GLY 116 A N GLN 159 A N GLN 96 A O SER 153 A O SER 90 A N VAL 144 A N VAL 81 A O VAL 143 A O VAL 80 A N ALA 104 A N ALA 41 A O THR 105 A O THR 42 A N VAL 92 A N VAL 29 A N GLU 94 A N GLU 31 A O THR 200 A O THR 137 A O MET 199 A O MET 136 A N PHE 74 A N PHE 11 A N TYR 69 A N TYR 6 A O PHE 205 A O PHE 142 A O ILE 208 A O ILE 145 A N TRP 81 A N TRP 18 A N LEU 84 A N LEU 21 A O TYR 165 A O TYR 102 A N MET 168 A N MET 105 A O TYR 175 A O TYR 112 A N ASN 178 A N ASN 115 A O THR 185 A O THR 122 A N ARG 117 A N ARG 54 A O ILE 128 A O ILE 65 1 A HOH 495 F HOH 1 A OH2 1PE 304 E OH2 1PE 1 1 N 1 A C12 1PE 304 E C12 1PE 1 1 N 1 A C22 1PE 304 E C22 1PE 1 1 N 1 A OH3 1PE 304 E OH3 1PE 1 1 N 1 A C13 1PE 304 E C13 1PE 1 1 N 1 A C23 1PE 304 E C23 1PE 1 1 N 1 A A O O HOH HOH 464 532 2.15 1 A THR 99 -128.17 -64.82 1 A ASN 111 60.25 75.40 1 A SER 114 -37.73 119.56 1 A PRO 182 -98.88 34.84 12.505 0.01 0.00 -0.00 0.01 0.00 -0.01 0.935 0.880 FLEXIBILITY OF THE TYR 155 CARBONYL IS OBSERVED. DENSITY FOR THIS CARBONYL GROUP IS AMBIGUOUS AND DOES NOT CLEARLY INDICATE ITS EXACT ORIENTATION. A PARTIALLY OCCUPIED WATER MAY BE PRESENT THIS IS NOT MODELLED IN THE COORDINATES. A POLYETHYLENE GLYCOL MOLECULE FROM THE RESERVOIR SOLUTION IS MODELLED (THIS IS PARTIALLY DEFINED IN THE DENSITY). HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT. 0.24923 0.18295 0.18605 2.00 38.93 533 10639 4.8 99.78 4.397 0.125 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.223 0.194 0.80 0.80 1.20 MAXIMUM LIKELIHOOD MASK 2.00 38.93 216 1541 45 0 1280 0.008 0.020 1380 1.251 1.963 1892 6.306 5.000 160 33.336 25.556 63 14.260 15.000 207 6.434 15.000 3 0.076 0.200 218 0.005 0.021 1035 0.327 1.500 804 0.647 2.000 1326 1.026 3.000 530 1.746 4.500 509 0.254 0.188 2.052 30 641 20 96.83 2.00 65.78 3TB0 10639 1 refinement REFMAC 5.5.0110 Crystal structure of Rhesus Rotavirus VP8* in complex with N-Glycolylneuraminic acid 1 N N 2 N N 3 N N 3 N N 4 N N 5 N N A ASN 193 A ASN 130 HELX_P A VAL 197 A VAL 134 5 1 5 A GLU 212 A GLU 149 HELX_P A GLY 223 A GLY 160 1 2 12 SUGAR BINDING PROTEIN, VIRAL PROTEIN BETA SANDWICH, LECTIN, SUGAR BINDING PROTEIN, VIRAL PROTEIN, Neu5Gc A GLY 67 A GLY 4 1 A PRO 68 A PRO 5 -1.19 A THR 181 A THR 118 1 A PRO 182 A PRO 119 6.49 VP4_ROTRH UNP 1 64 P12473 VLDGPYQPTSFNPPVDYWMLLAPTAAGVVVEGTNNTDRWLATILVEPNVTSETRSYTLFGTQEQITIANASQTQWKFIDV VKTTQNGSYSQYGPLQSTPKLYAVMKHNGKIYTYNGETPNVTTKYYSTTNYDSVNMTAFCDFYIIPREEESTCTEYINNG L 64 224 3TB0 64 224 P12473 A 1 1 161 1 SER SEE REMARK 999 THR 73 3TB0 A P12473 UNP 73 10 11 6 2 anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ASP 66 A ASP 3 A TYR 69 A TYR 6 A PHE 205 A PHE 142 A PRO 209 A PRO 146 A TYR 80 A TYR 17 A LEU 84 A LEU 21 A TYR 165 A TYR 102 A HIS 170 A HIS 107 A LYS 173 A LYS 110 A GLU 180 A GLU 117 A SER 153 A SER 90 A SER 160 A SER 97 A TRP 138 A TRP 75 A LYS 145 A LYS 82 A TRP 102 A TRP 39 A VAL 108 A VAL 45 A GLY 90 A GLY 27 A THR 96 A THR 33 A ASN 198 A ASN 135 A ALA 201 A ALA 138 A THR 72 A THR 9 A PHE 74 A PHE 11 A ASP 66 A ASP 3 A TYR 69 A TYR 6 A PHE 205 A PHE 142 A PRO 209 A PRO 146 A TYR 80 A TYR 17 A LEU 84 A LEU 21 A TYR 165 A TYR 102 A HIS 170 A HIS 107 A LYS 173 A LYS 110 A GLU 180 A GLU 117 A THR 185 A THR 122 A SER 190 A SER 127 A VAL 112 A VAL 49 A LEU 121 A LEU 58 A THR 124 A THR 61 A ASN 132 A ASN 69 92 P 41 21 2