0.020267 0.000000 0.000000 0.000000 0.019890 0.000000 0.000000 0.000000 0.015552 0.00000 0.00000 0.00000 Page, R.C. Amick, J. Misra, S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 49.342 50.277 64.299 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N N Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C N 359 N O N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N C N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing To be Published 0353 Crystal structure of the human ubiquitin-conjugating enzyme (E2) UbcH5b 10.2210/pdb3tgd/pdb pdb_00003tgd 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 mirrors CCD 2011-03-15 RIGAKU SATURN 944+ VariMax confocal SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU MICROMAX-007 HF 17158.686 Ubiquitin-conjugating enzyme E2 D2 6.3.2.19 1 man polymer 18.015 water 232 nat water Ubiquitin carrier protein D2, Ubiquitin-conjugating enzyme E2(17)KB 2, Ubiquitin-conjugating enzyme E2-17 kDa 2, Ubiquitin-protein ligase D2 no no GAMGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYH PNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM GAMGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYH PNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample UBC4, UBC5B, UBCH4, UBCH5B, UBE2D2 9606 Homo sapiens 562 Escherichia coli Rosetta2(DE3) PLASMID pGST-Parallel2 1 2.32 47.07 VAPOR DIFFUSION, SITTING DROP 7.5 0.8M potassium phosphate, 0.8M sodium phosphate, 0.1M HEPES, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K 293 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_ref_seq_dif repository Initial release Data collection Database references Refinement description 1 0 2011-08-31 1 1 2023-09-13 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details UbcH5b from a different expression construct UbcH5b in complex with cIAP2 RING domain UbcH5b(Ile37Ala) from a different expression construct UbcH5b(Ile88Ala) from a different expression construct UbcH5b(Ser94Gly) from a different expression construct RCSB Y RCSB 2011-08-17 REL REL HOH water 2ESK PDB ENTRY 2ESK PDB experimental model HOH 148 2 HOH HOH 148 A HOH 149 2 HOH HOH 149 A HOH 150 2 HOH HOH 150 A HOH 151 2 HOH HOH 151 A HOH 152 2 HOH HOH 152 A HOH 153 2 HOH HOH 153 A HOH 154 2 HOH HOH 154 A HOH 155 2 HOH HOH 155 A HOH 156 2 HOH HOH 156 A HOH 157 2 HOH HOH 157 A HOH 158 2 HOH HOH 158 A HOH 159 2 HOH HOH 159 A HOH 160 2 HOH HOH 160 A HOH 161 2 HOH HOH 161 A HOH 162 2 HOH HOH 162 A HOH 163 2 HOH HOH 163 A HOH 164 2 HOH HOH 164 A HOH 165 2 HOH HOH 165 A HOH 166 2 HOH HOH 166 A HOH 167 2 HOH HOH 167 A HOH 168 2 HOH HOH 168 A HOH 169 2 HOH HOH 169 A HOH 170 2 HOH HOH 170 A HOH 171 2 HOH HOH 171 A HOH 172 2 HOH HOH 172 A HOH 173 2 HOH HOH 173 A HOH 174 2 HOH HOH 174 A HOH 175 2 HOH HOH 175 A HOH 176 2 HOH HOH 176 A HOH 177 2 HOH HOH 177 A HOH 178 2 HOH HOH 178 A HOH 179 2 HOH HOH 179 A HOH 180 2 HOH HOH 180 A HOH 181 2 HOH HOH 181 A HOH 182 2 HOH HOH 182 A HOH 183 2 HOH HOH 183 A HOH 184 2 HOH HOH 184 A HOH 185 2 HOH HOH 185 A HOH 186 2 HOH HOH 186 A HOH 187 2 HOH HOH 187 A HOH 188 2 HOH HOH 188 A HOH 189 2 HOH HOH 189 A HOH 190 2 HOH HOH 190 A HOH 191 2 HOH HOH 191 A HOH 192 2 HOH HOH 192 A HOH 193 2 HOH HOH 193 A HOH 194 2 HOH HOH 194 A HOH 195 2 HOH HOH 195 A HOH 196 2 HOH HOH 196 A HOH 197 2 HOH HOH 197 A HOH 198 2 HOH HOH 198 A HOH 199 2 HOH HOH 199 A HOH 200 2 HOH HOH 200 A HOH 201 2 HOH HOH 201 A HOH 202 2 HOH HOH 202 A HOH 203 2 HOH HOH 203 A HOH 204 2 HOH HOH 204 A HOH 205 2 HOH HOH 205 A HOH 206 2 HOH HOH 206 A HOH 207 2 HOH HOH 207 A HOH 208 2 HOH HOH 208 A HOH 209 2 HOH HOH 209 A HOH 210 2 HOH HOH 210 A HOH 211 2 HOH HOH 211 A HOH 212 2 HOH HOH 212 A HOH 213 2 HOH HOH 213 A HOH 214 2 HOH HOH 214 A HOH 215 2 HOH HOH 215 A HOH 216 2 HOH HOH 216 A HOH 217 2 HOH HOH 217 A HOH 218 2 HOH HOH 218 A HOH 219 2 HOH HOH 219 A HOH 220 2 HOH HOH 220 A HOH 221 2 HOH HOH 221 A HOH 222 2 HOH HOH 222 A HOH 223 2 HOH HOH 223 A HOH 224 2 HOH HOH 224 A HOH 225 2 HOH HOH 225 A HOH 226 2 HOH HOH 226 A HOH 227 2 HOH HOH 227 A HOH 228 2 HOH HOH 228 A HOH 229 2 HOH HOH 229 A HOH 230 2 HOH HOH 230 A HOH 231 2 HOH HOH 231 A HOH 232 2 HOH HOH 232 A HOH 1 2 HOH HOH 233 A HOH 2 2 HOH HOH 234 A HOH 3 2 HOH HOH 235 A HOH 4 2 HOH HOH 236 A HOH 5 2 HOH HOH 237 A HOH 6 2 HOH HOH 238 A HOH 7 2 HOH HOH 239 A HOH 8 2 HOH HOH 240 A HOH 9 2 HOH HOH 241 A HOH 10 2 HOH HOH 242 A HOH 11 2 HOH HOH 243 A HOH 12 2 HOH HOH 244 A HOH 13 2 HOH HOH 245 A HOH 14 2 HOH HOH 246 A HOH 15 2 HOH HOH 247 A HOH 16 2 HOH HOH 248 A HOH 17 2 HOH HOH 249 A HOH 18 2 HOH HOH 250 A HOH 19 2 HOH HOH 251 A HOH 20 2 HOH HOH 252 A HOH 21 2 HOH HOH 253 A HOH 22 2 HOH HOH 254 A HOH 23 2 HOH HOH 255 A HOH 24 2 HOH HOH 256 A HOH 25 2 HOH HOH 257 A HOH 26 2 HOH HOH 258 A HOH 27 2 HOH HOH 259 A HOH 28 2 HOH HOH 260 A HOH 29 2 HOH HOH 261 A HOH 30 2 HOH HOH 262 A HOH 31 2 HOH HOH 263 A HOH 32 2 HOH HOH 264 A HOH 33 2 HOH HOH 265 A HOH 34 2 HOH HOH 266 A HOH 35 2 HOH HOH 267 A HOH 36 2 HOH HOH 268 A HOH 37 2 HOH HOH 269 A HOH 38 2 HOH HOH 270 A HOH 39 2 HOH HOH 271 A HOH 40 2 HOH HOH 272 A HOH 41 2 HOH HOH 273 A HOH 42 2 HOH HOH 274 A HOH 43 2 HOH HOH 275 A HOH 44 2 HOH HOH 276 A HOH 45 2 HOH HOH 277 A HOH 46 2 HOH HOH 278 A HOH 47 2 HOH HOH 279 A HOH 48 2 HOH HOH 280 A HOH 49 2 HOH HOH 281 A HOH 50 2 HOH HOH 282 A HOH 51 2 HOH HOH 283 A HOH 52 2 HOH HOH 284 A HOH 53 2 HOH HOH 285 A HOH 54 2 HOH HOH 286 A HOH 55 2 HOH HOH 287 A HOH 56 2 HOH HOH 288 A HOH 57 2 HOH HOH 289 A HOH 58 2 HOH HOH 290 A HOH 59 2 HOH HOH 291 A HOH 60 2 HOH HOH 292 A HOH 61 2 HOH HOH 293 A HOH 62 2 HOH HOH 294 A HOH 63 2 HOH HOH 295 A HOH 64 2 HOH HOH 296 A HOH 65 2 HOH HOH 297 A HOH 66 2 HOH HOH 298 A HOH 67 2 HOH HOH 299 A HOH 68 2 HOH HOH 300 A HOH 69 2 HOH HOH 301 A HOH 70 2 HOH HOH 302 A HOH 71 2 HOH HOH 303 A HOH 72 2 HOH HOH 304 A HOH 73 2 HOH HOH 305 A HOH 74 2 HOH HOH 306 A HOH 75 2 HOH HOH 307 A HOH 76 2 HOH HOH 308 A HOH 77 2 HOH HOH 309 A HOH 78 2 HOH HOH 310 A HOH 79 2 HOH HOH 311 A HOH 80 2 HOH HOH 312 A HOH 81 2 HOH HOH 313 A HOH 82 2 HOH HOH 314 A HOH 83 2 HOH HOH 315 A HOH 84 2 HOH HOH 316 A HOH 85 2 HOH HOH 317 A HOH 86 2 HOH HOH 318 A HOH 87 2 HOH HOH 319 A HOH 88 2 HOH HOH 320 A HOH 89 2 HOH HOH 321 A HOH 90 2 HOH HOH 322 A HOH 91 2 HOH HOH 323 A HOH 92 2 HOH HOH 324 A HOH 93 2 HOH HOH 325 A HOH 94 2 HOH HOH 326 A HOH 95 2 HOH HOH 327 A HOH 96 2 HOH HOH 328 A HOH 97 2 HOH HOH 329 A HOH 98 2 HOH HOH 330 A HOH 99 2 HOH HOH 331 A HOH 100 2 HOH HOH 332 A HOH 101 2 HOH HOH 333 A HOH 102 2 HOH HOH 334 A HOH 103 2 HOH HOH 335 A HOH 104 2 HOH HOH 336 A HOH 105 2 HOH HOH 337 A HOH 106 2 HOH HOH 338 A HOH 107 2 HOH HOH 339 A HOH 108 2 HOH HOH 340 A HOH 109 2 HOH HOH 341 A HOH 110 2 HOH HOH 342 A HOH 111 2 HOH HOH 343 A HOH 112 2 HOH HOH 344 A HOH 113 2 HOH HOH 345 A HOH 114 2 HOH HOH 346 A HOH 115 2 HOH HOH 347 A HOH 116 2 HOH HOH 348 A HOH 117 2 HOH HOH 349 A HOH 118 2 HOH HOH 350 A HOH 119 2 HOH HOH 351 A HOH 120 2 HOH HOH 352 A HOH 121 2 HOH HOH 353 A HOH 122 2 HOH HOH 354 A HOH 123 2 HOH HOH 355 A HOH 124 2 HOH HOH 356 A HOH 125 2 HOH HOH 357 A HOH 126 2 HOH HOH 358 A HOH 127 2 HOH HOH 359 A HOH 128 2 HOH HOH 360 A HOH 129 2 HOH HOH 361 A HOH 130 2 HOH HOH 362 A HOH 131 2 HOH HOH 363 A HOH 132 2 HOH HOH 364 A HOH 133 2 HOH HOH 365 A HOH 134 2 HOH HOH 366 A HOH 135 2 HOH HOH 367 A HOH 136 2 HOH HOH 368 A HOH 137 2 HOH HOH 369 A HOH 138 2 HOH HOH 370 A HOH 139 2 HOH HOH 371 A HOH 140 2 HOH HOH 372 A HOH 141 2 HOH HOH 373 A HOH 142 2 HOH HOH 374 A HOH 143 2 HOH HOH 375 A HOH 144 2 HOH HOH 376 A HOH 145 2 HOH HOH 377 A HOH 146 2 HOH HOH 378 A HOH 147 2 HOH HOH 379 A GLY -4 n 1 GLY -4 A ALA -3 n 2 ALA -3 A MET -2 n 3 MET -2 A GLY -1 n 4 GLY -1 A SER 0 n 5 SER 0 A MET 1 n 6 MET 1 A ALA 2 n 7 ALA 2 A LEU 3 n 8 LEU 3 A LYS 4 n 9 LYS 4 A ARG 5 n 10 ARG 5 A ILE 6 n 11 ILE 6 A HIS 7 n 12 HIS 7 A LYS 8 n 13 LYS 8 A GLU 9 n 14 GLU 9 A LEU 10 n 15 LEU 10 A ASN 11 n 16 ASN 11 A ASP 12 n 17 ASP 12 A LEU 13 n 18 LEU 13 A ALA 14 n 19 ALA 14 A ARG 15 n 20 ARG 15 A ASP 16 n 21 ASP 16 A PRO 17 n 22 PRO 17 A PRO 18 n 23 PRO 18 A ALA 19 n 24 ALA 19 A GLN 20 n 25 GLN 20 A CYS 21 n 26 CYS 21 A SER 22 n 27 SER 22 A ALA 23 n 28 ALA 23 A GLY 24 n 29 GLY 24 A PRO 25 n 30 PRO 25 A VAL 26 n 31 VAL 26 A GLY 27 n 32 GLY 27 A ASP 28 n 33 ASP 28 A ASP 29 n 34 ASP 29 A MET 30 n 35 MET 30 A PHE 31 n 36 PHE 31 A HIS 32 n 37 HIS 32 A TRP 33 n 38 TRP 33 A GLN 34 n 39 GLN 34 A ALA 35 n 40 ALA 35 A THR 36 n 41 THR 36 A ILE 37 n 42 ILE 37 A MET 38 n 43 MET 38 A GLY 39 n 44 GLY 39 A PRO 40 n 45 PRO 40 A ASN 41 n 46 ASN 41 A ASP 42 n 47 ASP 42 A SER 43 n 48 SER 43 A PRO 44 n 49 PRO 44 A TYR 45 n 50 TYR 45 A GLN 46 n 51 GLN 46 A GLY 47 n 52 GLY 47 A GLY 48 n 53 GLY 48 A VAL 49 n 54 VAL 49 A PHE 50 n 55 PHE 50 A PHE 51 n 56 PHE 51 A LEU 52 n 57 LEU 52 A THR 53 n 58 THR 53 A ILE 54 n 59 ILE 54 A HIS 55 n 60 HIS 55 A PHE 56 n 61 PHE 56 A PRO 57 n 62 PRO 57 A THR 58 n 63 THR 58 A ASP 59 n 64 ASP 59 A TYR 60 n 65 TYR 60 A PRO 61 n 66 PRO 61 A PHE 62 n 67 PHE 62 A LYS 63 n 68 LYS 63 A PRO 64 n 69 PRO 64 A PRO 65 n 70 PRO 65 A LYS 66 n 71 LYS 66 A VAL 67 n 72 VAL 67 A ALA 68 n 73 ALA 68 A PHE 69 n 74 PHE 69 A THR 70 n 75 THR 70 A THR 71 n 76 THR 71 A ARG 72 n 77 ARG 72 A ILE 73 n 78 ILE 73 A TYR 74 n 79 TYR 74 A HIS 75 n 80 HIS 75 A PRO 76 n 81 PRO 76 A ASN 77 n 82 ASN 77 A ILE 78 n 83 ILE 78 A ASN 79 n 84 ASN 79 A SER 80 n 85 SER 80 A ASN 81 n 86 ASN 81 A GLY 82 n 87 GLY 82 A SER 83 n 88 SER 83 A ILE 84 n 89 ILE 84 A CYS 85 n 90 CYS 85 A LEU 86 n 91 LEU 86 A ASP 87 n 92 ASP 87 A ILE 88 n 93 ILE 88 A LEU 89 n 94 LEU 89 A ARG 90 n 95 ARG 90 A SER 91 n 96 SER 91 A GLN 92 n 97 GLN 92 A TRP 93 n 98 TRP 93 A SER 94 n 99 SER 94 A PRO 95 n 100 PRO 95 A ALA 96 n 101 ALA 96 A LEU 97 n 102 LEU 97 A THR 98 n 103 THR 98 A ILE 99 n 104 ILE 99 A SER 100 n 105 SER 100 A LYS 101 n 106 LYS 101 A VAL 102 n 107 VAL 102 A LEU 103 n 108 LEU 103 A LEU 104 n 109 LEU 104 A SER 105 n 110 SER 105 A ILE 106 n 111 ILE 106 A CYS 107 n 112 CYS 107 A SER 108 n 113 SER 108 A LEU 109 n 114 LEU 109 A LEU 110 n 115 LEU 110 A CYS 111 n 116 CYS 111 A ASP 112 n 117 ASP 112 A PRO 113 n 118 PRO 113 A ASN 114 n 119 ASN 114 A PRO 115 n 120 PRO 115 A ASP 116 n 121 ASP 116 A ASP 117 n 122 ASP 117 A PRO 118 n 123 PRO 118 A LEU 119 n 124 LEU 119 A VAL 120 n 125 VAL 120 A PRO 121 n 126 PRO 121 A GLU 122 n 127 GLU 122 A ILE 123 n 128 ILE 123 A ALA 124 n 129 ALA 124 A ARG 125 n 130 ARG 125 A ILE 126 n 131 ILE 126 A TYR 127 n 132 TYR 127 A LYS 128 n 133 LYS 128 A THR 129 n 134 THR 129 A ASP 130 n 135 ASP 130 A ARG 131 n 136 ARG 131 A GLU 132 n 137 GLU 132 A LYS 133 n 138 LYS 133 A TYR 134 n 139 TYR 134 A ASN 135 n 140 ASN 135 A ARG 136 n 141 ARG 136 A ILE 137 n 142 ILE 137 A ALA 138 n 143 ALA 138 A ARG 139 n 144 ARG 139 A GLU 140 n 145 GLU 140 A TRP 141 n 146 TRP 141 A THR 142 n 147 THR 142 A GLN 143 n 148 GLN 143 A LYS 144 n 149 LYS 144 A TYR 145 n 150 TYR 145 A ALA 146 n 151 ALA 146 A MET 147 n 152 MET 147 A 0.3461 0.0941 0.0891 0.0300 0.0083 0.0806 -0.0960 0.0677 0.0881 -0.0175 0.1474 0.1069 -0.0159 -0.0110 0.0053 0.0703 0.0117 0.0021 0.0521 0.0119 0.0946 refined 7.6970 -16.9091 -24.2213 X-RAY DIFFRACTION 0.3440 0.1886 0.1000 0.3380 0.2612 0.2239 0.0081 -0.0331 -0.0270 -0.0162 0.0053 -0.0818 0.0137 0.0125 0.0083 0.0345 0.0058 -0.0060 0.0369 0.0068 0.0346 refined 13.2011 -7.5787 -13.0441 X-RAY DIFFRACTION 0.0029 0.0013 -0.0049 0.3179 0.1026 0.0430 0.0192 -0.0498 0.0141 0.1563 -0.0688 0.1600 0.0910 -0.0540 0.0085 0.0672 -0.0082 0.0141 0.1089 -0.0029 0.0896 refined 1.3766 -12.7623 -9.1449 X-RAY DIFFRACTION 0.1113 0.0325 -0.0937 0.1491 0.0627 0.1458 0.0301 -0.0449 0.0374 0.0571 -0.1212 0.0922 0.0087 -0.1594 -0.0064 0.0793 -0.0044 -0.0072 0.0821 0.0023 0.0643 refined 5.5621 1.3987 -5.9204 X-RAY DIFFRACTION 0.5101 0.1964 -0.3929 0.0756 -0.1521 0.3847 0.1407 0.0564 0.1043 -0.0258 -0.0121 0.0817 -0.2203 0.0839 0.0866 0.1024 -0.0169 -0.0069 0.0848 0.0030 0.0821 refined 15.1789 11.0954 -8.0845 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 chain 'A' and (resseq -4:25) X-RAY DIFFRACTION 2 chain 'A' and (resseq 26:84) X-RAY DIFFRACTION 3 chain 'A' and (resseq 85:98) X-RAY DIFFRACTION 4 chain 'A' and (resseq 99:130) X-RAY DIFFRACTION 5 chain 'A' and (resseq 131:147) author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N SER 22 A N SER 27 A O THR 36 A O THR 41 A N TRP 33 A N TRP 38 A O ILE 54 A O ILE 59 A N HIS 55 A N HIS 60 A O LYS 66 A O LYS 71 1 A ARG 90 -114.35 -79.69 0.4430 -0.0000 -0.0000 -0.2372 0.0000 -0.2058 0.2028 0.1788 0.1812 1.800 30.887 1518 15004 14979 10.13 97.46 0.35 RANDOM 1 THROUGHOUT 0.00 MOLECULAR REPLACEMENT 18.28 0.61 0.90 PDB ENTRY 2ESK MLHL FLAT BULK SOLVENT MODEL 51.450 0.369 1.800 30.887 232 1437 0 0 1205 0.010 1266 1.192 1733 13.843 482 0.100 186 0.007 227 0.2879 0.2411 1.8581 110 965 78.00 0.2548 0.1965 1.9245 134 1162 96.00 0.2157 0.1902 2.0015 129 1233 99.00 0.2251 0.1824 2.0926 139 1236 100.00 0.1870 0.1704 2.2029 147 1230 100.00 0.2090 0.1789 2.3409 134 1247 100.00 0.2027 0.1764 2.5215 142 1248 100.00 0.1876 0.1828 2.7751 141 1253 100.00 0.2010 0.1770 3.1764 139 1258 100.00 0.1818 0.1660 4.0005 148 1281 100.00 0.2011 0.1763 30.8914 155 1348 100.00 15.38 1.800 30.887 3TGD 15004 15004 0.0 0.0 0.043 1 30.7 6.04 97.6 0.080 1.80 1.86 5.8 1511 1 2.55 80.1 data collection StructureStudio model building PHENIX 1.7_743 refinement PHENIX (phenix.refine: 1.7.1_743) data reduction d*TREK data scaling d*TREK phasing PHENIX 1.7_743 N Crystal structure of the human ubiquitin-conjugating enzyme (E2) UbcH5b 1 N N 2 N N A SER 0 A SER 5 HELX_P A ASP 16 A ASP 21 1 1 17 A LEU 86 A LEU 91 HELX_P A ARG 90 A ARG 95 5 2 5 A THR 98 A THR 103 HELX_P A ASP 112 A ASP 117 1 3 15 A VAL 120 A VAL 125 HELX_P A ASP 130 A ASP 135 1 4 11 A ASP 130 A ASP 135 HELX_P A ALA 146 A ALA 151 1 5 17 LIGASE UBC-like, ubiqutin-conjugating enzyme, ubiquitin binding, LIGASE A TYR 60 A TYR 65 1 A PRO 61 A PRO 66 17.59 UB2D2_HUMAN UNP 1 1 P62837 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 1 147 3TGD 1 147 P62837 A 1 6 152 1 expression tag GLY -4 3TGD A P62837 UNP 1 1 expression tag ALA -3 3TGD A P62837 UNP 2 1 expression tag MET -2 3TGD A P62837 UNP 3 1 expression tag GLY -1 3TGD A P62837 UNP 4 1 expression tag SER 0 3TGD A P62837 UNP 5 4 anti-parallel anti-parallel anti-parallel A CYS 21 A CYS 26 A PRO 25 A PRO 30 A HIS 32 A HIS 37 A MET 38 A MET 43 A VAL 49 A VAL 54 A HIS 55 A HIS 60 A LYS 66 A LYS 71 A PHE 69 A PHE 74 19 P 21 21 21