0.014934 0.000000 0.000000 0.000000 0.007937 0.000000 0.000000 0.000000 0.005222 0.00000 0.00000 0.00000 Kwon, Y.D. Kwong, P.D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.00 90.00 90.00 66.960 126.000 191.480 C17 H24 Cl N3 O2 337.844 N-(4-chlorophenyl)-N'-(2,2,6,6-tetramethylpiperidin-4-yl)ethanediamide NBD-556 non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose D-saccharide, beta linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 109 5663 5668 10.1073/pnas.1112391109 22451932 Unliganded HIV-1 gp120 core structures assume the CD4-bound conformation with regulation by quaternary interactions and variable loops. 2012 100 1 IMAGE PLATE 2009-08-07 MAR scanner 300 mm plate SINGLE WAVELENGTH M x-ray 1 1 1.0 22-ID APS 1 SYNCHROTRON APS BEAMLINE 22-ID 39755.664 HIV-1 clade C1086 gp120 core 2 man polymer 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose 13 man non-polymer 337.844 N-(4-chlorophenyl)-N'-(2,2,6,6-tetramethylpiperidin-4-yl)ethanediamide 2 syn non-polymer 18.015 water 104 nat water no no VWKEAKTTLFCASDAKAYEKEVHNVWATHACVPTDPNPQEMVLANVTENFNMWKNDMVEQMHEDIISLWDESLKPCVKLT GGSAITQACPKVSFDPIPLHYCAPAGFAILKCNNKTFNGTGPCRNVSTVQCTHGIKPVVSTQLLLNGSLAEEEIIIRSEN LTNNAKTIIVHLNESVNIVCTRPNNGGSGSGGNIRQAHCNINESKWNNTLQKVGEELAKHFPSKTIKFEPSSGGDLEITT HSFNCRGEFFYCNTSDLFNGTYRNGTYNHTGRSSNGTITLQCKIKQIINMWQEVGRAIYAPPIEGEITCNSNITGLLLLR DGGQSNETNDTETFRPGGGDMRDNWRSELYKYKVVEIK VWKEAKTTLFCASDAKAYEKEVHNVWATHACVPTDPNPQEMVLANVTENFNMWKNDMVEQMHEDIISLWDESLKPCVKLT GGSAITQACPKVSFDPIPLHYCAPAGFAILKCNNKTFNGTGPCRNVSTVQCTHGIKPVVSTQLLLNGSLAEEEIIIRSEN LTNNAKTIIVHLNESVNIVCTRPNNGGSGSGGNIRQAHCNINESKWNNTLQKVGEELAKHFPSKTIKFEPSSGGDLEITT HSFNCRGEFFYCNTSDLFNGTYRNGTYNHTGRSSNGTITLQCKIKQIINMWQEVGRAIYAPPIEGEITCNSNITGLLLLR DGGQSNETNDTETFRPGGGDMRDNWRSELYKYKVVEIK A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n HIV-1 sample 11676 Human immunodeficiency virus 1 HEK 293 9606 HOMO SAPIENS plasmid pVRC8400 1 2.54 51.57 VAPOR DIFFUSION, HANGING DROP 6.5 16% PEG 1500, 0.1M CaCl2, 0.1M imidazole, VAPOR DIFFUSION, HANGING DROP, temperature 293K, pH 6.5 293 software chem_comp entity pdbx_chem_comp_identifier pdbx_entity_nonpoly struct_conn struct_site struct_site_gen repository Initial release Carbohydrate remediation repository Remediation Database references Non-polymer description Refinement description Data collection Derived calculations Structure summary 1 0 2012-04-04 1 1 2012-05-23 1 2 2014-12-17 1 3 2017-11-08 1 4 2020-07-29 _chem_comp.name _chem_comp.type _entity.pdbx_description _pdbx_entity_nonpoly.name _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_role _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc RCSB Y RCSB 2011-08-17 REL REL NAG 2-acetamido-2-deoxy-beta-D-glucopyranose 03G N-(4-chlorophenyl)-N'-(2,2,6,6-tetramethylpiperidin-4-yl)ethanediamide HOH water NAG 734 2 NAG NAG 501 A NAG 762 2 NAG NAG 502 A NAG 776 2 NAG NAG 503 A NAG 789 2 NAG NAG 504 A NAG 839 2 NAG NAG 505 A NAG 886 2 NAG NAG 506 A NBD 1 3 03G 03G 507 A NAG 892 2 NAG NAG 508 A NAG 948 2 NAG NAG 509 A NAG 734 2 NAG NAG 501 B NBD 1 3 03G 03G 502 B NAG 762 2 NAG NAG 503 B NAG 789 2 NAG NAG 504 B NAG 886 2 NAG NAG 505 B NAG 892 2 NAG NAG 506 B HOH 2 4 HOH HOH 601 A HOH 3 4 HOH HOH 602 A HOH 4 4 HOH HOH 603 A HOH 5 4 HOH HOH 604 A HOH 7 4 HOH HOH 605 A HOH 8 4 HOH HOH 606 A HOH 9 4 HOH HOH 607 A HOH 15 4 HOH HOH 608 A HOH 21 4 HOH HOH 609 A HOH 22 4 HOH HOH 610 A HOH 25 4 HOH HOH 611 A HOH 26 4 HOH HOH 612 A HOH 29 4 HOH HOH 613 A HOH 31 4 HOH HOH 614 A HOH 32 4 HOH HOH 615 A HOH 33 4 HOH HOH 616 A HOH 35 4 HOH HOH 617 A HOH 36 4 HOH HOH 618 A HOH 37 4 HOH HOH 619 A HOH 38 4 HOH HOH 620 A HOH 40 4 HOH HOH 621 A HOH 43 4 HOH HOH 622 A HOH 45 4 HOH HOH 623 A HOH 46 4 HOH HOH 624 A HOH 47 4 HOH HOH 625 A HOH 49 4 HOH HOH 626 A HOH 51 4 HOH HOH 627 A HOH 52 4 HOH HOH 628 A HOH 54 4 HOH HOH 629 A HOH 55 4 HOH HOH 630 A HOH 57 4 HOH HOH 631 A HOH 58 4 HOH HOH 632 A HOH 62 4 HOH HOH 633 A HOH 64 4 HOH HOH 634 A HOH 65 4 HOH HOH 635 A HOH 66 4 HOH HOH 636 A HOH 67 4 HOH HOH 637 A HOH 71 4 HOH HOH 638 A HOH 72 4 HOH HOH 639 A HOH 73 4 HOH HOH 640 A HOH 76 4 HOH HOH 641 A HOH 77 4 HOH HOH 642 A HOH 79 4 HOH HOH 643 A HOH 80 4 HOH HOH 644 A HOH 84 4 HOH HOH 645 A HOH 86 4 HOH HOH 646 A HOH 87 4 HOH HOH 647 A HOH 88 4 HOH HOH 648 A HOH 90 4 HOH HOH 649 A HOH 92 4 HOH HOH 650 A HOH 93 4 HOH HOH 651 A HOH 95 4 HOH HOH 652 A HOH 96 4 HOH HOH 653 A HOH 99 4 HOH HOH 654 A HOH 100 4 HOH HOH 655 A HOH 101 4 HOH HOH 656 A HOH 103 4 HOH HOH 657 A HOH 104 4 HOH HOH 658 A HOH 1 4 HOH HOH 601 B HOH 6 4 HOH HOH 602 B HOH 10 4 HOH HOH 603 B HOH 11 4 HOH HOH 604 B HOH 12 4 HOH HOH 605 B HOH 13 4 HOH HOH 606 B HOH 14 4 HOH HOH 607 B HOH 16 4 HOH HOH 608 B HOH 17 4 HOH HOH 609 B HOH 18 4 HOH HOH 610 B HOH 19 4 HOH HOH 611 B HOH 20 4 HOH HOH 612 B HOH 23 4 HOH HOH 613 B HOH 24 4 HOH HOH 614 B HOH 27 4 HOH HOH 615 B HOH 28 4 HOH HOH 616 B HOH 30 4 HOH HOH 617 B HOH 34 4 HOH HOH 618 B HOH 39 4 HOH HOH 619 B HOH 41 4 HOH HOH 620 B HOH 42 4 HOH HOH 621 B HOH 44 4 HOH HOH 622 B HOH 48 4 HOH HOH 623 B HOH 50 4 HOH HOH 624 B HOH 53 4 HOH HOH 625 B HOH 56 4 HOH HOH 626 B HOH 59 4 HOH HOH 627 B HOH 60 4 HOH HOH 628 B HOH 61 4 HOH HOH 629 B HOH 63 4 HOH HOH 630 B HOH 68 4 HOH HOH 631 B HOH 69 4 HOH HOH 632 B HOH 70 4 HOH HOH 633 B HOH 74 4 HOH HOH 634 B HOH 75 4 HOH HOH 635 B HOH 78 4 HOH HOH 636 B HOH 81 4 HOH HOH 637 B HOH 82 4 HOH HOH 638 B HOH 83 4 HOH HOH 639 B HOH 85 4 HOH HOH 640 B HOH 89 4 HOH HOH 641 B HOH 91 4 HOH HOH 642 B HOH 94 4 HOH HOH 643 B HOH 98 4 HOH HOH 644 B HOH 102 4 HOH HOH 645 B HOH 105 4 HOH HOH 646 B VAL 44 n 1 VAL 44 A TRP 45 n 2 TRP 45 A LYS 46 n 3 LYS 46 A GLU 47 n 4 GLU 47 A ALA 48 n 5 ALA 48 A LYS 49 n 6 LYS 49 A THR 50 n 7 THR 50 A THR 51 n 8 THR 51 A LEU 52 n 9 LEU 52 A PHE 53 n 10 PHE 53 A CYS 54 n 11 CYS 54 A ALA 55 n 12 ALA 55 A SER 56 n 13 SER 56 A ASP 57 n 14 ASP 57 A ALA 58 n 15 ALA 58 A LYS 59 n 16 LYS 59 A ALA 60 n 17 ALA 60 A TYR 61 n 18 TYR 61 A GLU 62 n 19 GLU 62 A LYS 63 n 20 LYS 63 A GLU 64 n 21 GLU 64 A VAL 65 n 22 VAL 65 A HIS 66 n 23 HIS 66 A ASN 67 n 24 ASN 67 A VAL 68 n 25 VAL 68 A TRP 69 n 26 TRP 69 A ALA 70 n 27 ALA 70 A THR 71 n 28 THR 71 A HIS 72 n 29 HIS 72 A ALA 73 n 30 ALA 73 A CYS 74 n 31 CYS 74 A VAL 75 n 32 VAL 75 A PRO 76 n 33 PRO 76 A THR 77 n 34 THR 77 A ASP 78 n 35 ASP 78 A PRO 79 n 36 PRO 79 A ASN 80 n 37 ASN 80 A PRO 81 n 38 PRO 81 A GLN 82 n 39 GLN 82 A GLU 83 n 40 GLU 83 A MET 84 n 41 MET 84 A VAL 85 n 42 VAL 85 A LEU 86 n 43 LEU 86 A ALA 87 n 44 ALA 87 A ASN 88 n 45 ASN 88 A VAL 89 n 46 VAL 89 A THR 90 n 47 THR 90 A GLU 91 n 48 GLU 91 A ASN 92 n 49 ASN 92 A PHE 93 n 50 PHE 93 A ASN 94 n 51 ASN 94 A MET 95 n 52 MET 95 A TRP 96 n 53 TRP 96 A LYS 97 n 54 LYS 97 A ASN 98 n 55 ASN 98 A ASP 99 n 56 ASP 99 A MET 100 n 57 MET 100 A VAL 101 n 58 VAL 101 A GLU 102 n 59 GLU 102 A GLN 103 n 60 GLN 103 A MET 104 n 61 MET 104 A HIS 105 n 62 HIS 105 A GLU 106 n 63 GLU 106 A ASP 107 n 64 ASP 107 A ILE 108 n 65 ILE 108 A ILE 109 n 66 ILE 109 A SER 110 n 67 SER 110 A LEU 111 n 68 LEU 111 A TRP 112 n 69 TRP 112 A ASP 113 n 70 ASP 113 A GLU 114 n 71 GLU 114 A SER 115 n 72 SER 115 A LEU 116 n 73 LEU 116 A LYS 117 n 74 LYS 117 A PRO 118 n 75 PRO 118 A CYS 119 n 76 CYS 119 A VAL 120 n 77 VAL 120 A LYS 121 n 78 LYS 121 A LEU 122 n 79 LEU 122 A THR 123 n 80 THR 123 A GLY 124 n 81 GLY 124 A GLY 198 n 82 GLY 198 A SER 199 n 83 SER 199 A ALA 200 n 84 ALA 200 A ILE 201 n 85 ILE 201 A THR 202 n 86 THR 202 A GLN 203 n 87 GLN 203 A ALA 204 n 88 ALA 204 A CYS 205 n 89 CYS 205 A PRO 206 n 90 PRO 206 A LYS 207 n 91 LYS 207 A VAL 208 n 92 VAL 208 A SER 209 n 93 SER 209 A PHE 210 n 94 PHE 210 A ASP 211 n 95 ASP 211 A PRO 212 n 96 PRO 212 A ILE 213 n 97 ILE 213 A PRO 214 n 98 PRO 214 A LEU 215 n 99 LEU 215 A HIS 216 n 100 HIS 216 A TYR 217 n 101 TYR 217 A CYS 218 n 102 CYS 218 A ALA 219 n 103 ALA 219 A PRO 220 n 104 PRO 220 A ALA 221 n 105 ALA 221 A GLY 222 n 106 GLY 222 A PHE 223 n 107 PHE 223 A ALA 224 n 108 ALA 224 A ILE 225 n 109 ILE 225 A LEU 226 n 110 LEU 226 A LYS 227 n 111 LYS 227 A CYS 228 n 112 CYS 228 A ASN 229 n 113 ASN 229 A ASN 230 n 114 ASN 230 A LYS 231 n 115 LYS 231 A THR 232 n 116 THR 232 A PHE 233 n 117 PHE 233 A ASN 234 n 118 ASN 234 A GLY 235 n 119 GLY 235 A THR 236 n 120 THR 236 A GLY 237 n 121 GLY 237 A PRO 238 n 122 PRO 238 A CYS 239 n 123 CYS 239 A ARG 240 n 124 ARG 240 A ASN 241 n 125 ASN 241 A VAL 242 n 126 VAL 242 A SER 243 n 127 SER 243 A THR 244 n 128 THR 244 A VAL 245 n 129 VAL 245 A GLN 246 n 130 GLN 246 A CYS 247 n 131 CYS 247 A THR 248 n 132 THR 248 A HIS 249 n 133 HIS 249 A GLY 250 n 134 GLY 250 A ILE 251 n 135 ILE 251 A LYS 252 n 136 LYS 252 A PRO 253 n 137 PRO 253 A VAL 254 n 138 VAL 254 A VAL 255 n 139 VAL 255 A SER 256 n 140 SER 256 A THR 257 n 141 THR 257 A GLN 258 n 142 GLN 258 A LEU 259 n 143 LEU 259 A LEU 260 n 144 LEU 260 A LEU 261 n 145 LEU 261 A ASN 262 n 146 ASN 262 A GLY 263 n 147 GLY 263 A SER 264 n 148 SER 264 A LEU 265 n 149 LEU 265 A ALA 266 n 150 ALA 266 A GLU 267 n 151 GLU 267 A GLU 268 n 152 GLU 268 A GLU 269 n 153 GLU 269 A ILE 270 n 154 ILE 270 A ILE 271 n 155 ILE 271 A ILE 272 n 156 ILE 272 A ARG 273 n 157 ARG 273 A SER 274 n 158 SER 274 A GLU 275 n 159 GLU 275 A ASN 276 n 160 ASN 276 A LEU 277 n 161 LEU 277 A THR 278 n 162 THR 278 A ASN 279 n 163 ASN 279 A ASN 280 n 164 ASN 280 A ALA 281 n 165 ALA 281 A LYS 282 n 166 LYS 282 A THR 283 n 167 THR 283 A ILE 284 n 168 ILE 284 A ILE 285 n 169 ILE 285 A VAL 286 n 170 VAL 286 A HIS 287 n 171 HIS 287 A LEU 288 n 172 LEU 288 A ASN 289 n 173 ASN 289 A GLU 290 n 174 GLU 290 A SER 291 n 175 SER 291 A VAL 292 n 176 VAL 292 A ASN 293 n 177 ASN 293 A ILE 294 n 178 ILE 294 A VAL 295 n 179 VAL 295 A CYS 296 n 180 CYS 296 A THR 297 n 181 THR 297 A ARG 298 n 182 ARG 298 A PRO 299 n 183 PRO 299 A ASN 300 n 184 ASN 300 A n 185 317 A n 186 318 A n 187 319 A n 188 320 A n 189 321 A n 190 322 A n 191 323 A n 192 324 A ASN 325 n 193 ASN 325 A ILE 326 n 194 ILE 326 A ARG 327 n 195 ARG 327 A GLN 328 n 196 GLN 328 A ALA 329 n 197 ALA 329 A HIS 330 n 198 HIS 330 A CYS 331 n 199 CYS 331 A ASN 332 n 200 ASN 332 A ILE 333 n 201 ILE 333 A ASN 334 n 202 ASN 334 A GLU 335 n 203 GLU 335 A SER 336 n 204 SER 336 A LYS 337 n 205 LYS 337 A TRP 338 n 206 TRP 338 A ASN 339 n 207 ASN 339 A ASN 340 n 208 ASN 340 A THR 341 n 209 THR 341 A LEU 342 n 210 LEU 342 A GLN 343 n 211 GLN 343 A LYS 344 n 212 LYS 344 A VAL 345 n 213 VAL 345 A GLY 346 n 214 GLY 346 A GLU 347 n 215 GLU 347 A GLU 348 n 216 GLU 348 A LEU 349 n 217 LEU 349 A ALA 350 n 218 ALA 350 A LYS 351 n 219 LYS 351 A HIS 352 n 220 HIS 352 A PHE 353 n 221 PHE 353 A PRO 354 n 222 PRO 354 A SER 356 n 223 SER 356 A LYS 357 n 224 LYS 357 A THR 358 n 225 THR 358 A ILE 359 n 226 ILE 359 A LYS 360 n 227 LYS 360 A PHE 361 n 228 PHE 361 A GLU 362 n 229 GLU 362 A PRO 363 n 230 PRO 363 A SER 364 n 231 SER 364 A SER 365 n 232 SER 365 A GLY 366 n 233 GLY 366 A GLY 367 n 234 GLY 367 A ASP 368 n 235 ASP 368 A LEU 369 n 236 LEU 369 A GLU 370 n 237 GLU 370 A ILE 371 n 238 ILE 371 A THR 372 n 239 THR 372 A THR 373 n 240 THR 373 A HIS 374 n 241 HIS 374 A SER 375 n 242 SER 375 A PHE 376 n 243 PHE 376 A ASN 377 n 244 ASN 377 A CYS 378 n 245 CYS 378 A ARG 379 n 246 ARG 379 A GLY 380 n 247 GLY 380 A GLU 381 n 248 GLU 381 A PHE 382 n 249 PHE 382 A PHE 383 n 250 PHE 383 A TYR 384 n 251 TYR 384 A CYS 385 n 252 CYS 385 A ASN 386 n 253 ASN 386 A THR 387 n 254 THR 387 A SER 388 n 255 SER 388 A ASP 389 n 256 ASP 389 A LEU 390 n 257 LEU 390 A PHE 391 n 258 PHE 391 A ASN 392 n 259 ASN 392 A GLY 393 n 260 GLY 393 A THR 394 n 261 THR 394 A TYR 395 n 262 TYR 395 A ARG 396 n 263 ARG 396 A ASN 397 n 264 ASN 397 A GLY 398 n 265 GLY 398 A THR 399 n 266 THR 399 A TYR 403 n 267 TYR 403 A ASN 404 n 268 ASN 404 A HIS 405 n 269 HIS 405 A THR 406 n 270 THR 406 A GLY 407 n 271 GLY 407 A ARG 408 n 272 ARG 408 A SER 409 n 273 SER 409 A SER 410 n 274 SER 410 A ASN 411 n 275 ASN 411 A GLY 412 n 276 GLY 412 A THR 413 n 277 THR 413 A ILE 414 n 278 ILE 414 A THR 415 n 279 THR 415 A LEU 416 n 280 LEU 416 A GLN 417 n 281 GLN 417 A CYS 418 n 282 CYS 418 A LYS 419 n 283 LYS 419 A ILE 420 n 284 ILE 420 A LYS 421 n 285 LYS 421 A GLN 422 n 286 GLN 422 A ILE 423 n 287 ILE 423 A ILE 424 n 288 ILE 424 A ASN 425 n 289 ASN 425 A MET 426 n 290 MET 426 A TRP 427 n 291 TRP 427 A GLN 428 n 292 GLN 428 A GLU 429 n 293 GLU 429 A VAL 430 n 294 VAL 430 A GLY 431 n 295 GLY 431 A ARG 432 n 296 ARG 432 A ALA 433 n 297 ALA 433 A ILE 434 n 298 ILE 434 A TYR 435 n 299 TYR 435 A ALA 436 n 300 ALA 436 A PRO 437 n 301 PRO 437 A PRO 438 n 302 PRO 438 A ILE 439 n 303 ILE 439 A GLU 440 n 304 GLU 440 A GLY 441 n 305 GLY 441 A GLU 442 n 306 GLU 442 A ILE 443 n 307 ILE 443 A THR 444 n 308 THR 444 A CYS 445 n 309 CYS 445 A ASN 446 n 310 ASN 446 A SER 447 n 311 SER 447 A ASN 448 n 312 ASN 448 A ILE 449 n 313 ILE 449 A THR 450 n 314 THR 450 A GLY 451 n 315 GLY 451 A LEU 452 n 316 LEU 452 A LEU 453 n 317 LEU 453 A LEU 454 n 318 LEU 454 A LEU 455 n 319 LEU 455 A ARG 456 n 320 ARG 456 A ASP 457 n 321 ASP 457 A GLY 458 n 322 GLY 458 A GLY 459 n 323 GLY 459 A n 324 A 459 A n 325 B 459 A n 326 C 459 A n 327 D 459 A n 328 E 459 A ASN 463 n 329 ASN 463 A ASP 464 n 330 ASP 464 A THR 465 n 331 THR 465 A GLU 466 n 332 GLU 466 A THR 467 n 333 THR 467 A PHE 468 n 334 PHE 468 A ARG 469 n 335 ARG 469 A PRO 470 n 336 PRO 470 A GLY 471 n 337 GLY 471 A GLY 472 n 338 GLY 472 A GLY 473 n 339 GLY 473 A ASP 474 n 340 ASP 474 A MET 475 n 341 MET 475 A ARG 476 n 342 ARG 476 A ASP 477 n 343 ASP 477 A ASN 478 n 344 ASN 478 A TRP 479 n 345 TRP 479 A ARG 480 n 346 ARG 480 A SER 481 n 347 SER 481 A GLU 482 n 348 GLU 482 A LEU 483 n 349 LEU 483 A TYR 484 n 350 TYR 484 A LYS 485 n 351 LYS 485 A TYR 486 n 352 TYR 486 A LYS 487 n 353 LYS 487 A VAL 488 n 354 VAL 488 A VAL 489 n 355 VAL 489 A GLU 490 n 356 GLU 490 A ILE 491 n 357 ILE 491 A LYS 492 n 358 LYS 492 A VAL 44 n 1 VAL 44 B TRP 45 n 2 TRP 45 B LYS 46 n 3 LYS 46 B GLU 47 n 4 GLU 47 B ALA 48 n 5 ALA 48 B LYS 49 n 6 LYS 49 B THR 50 n 7 THR 50 B THR 51 n 8 THR 51 B LEU 52 n 9 LEU 52 B PHE 53 n 10 PHE 53 B CYS 54 n 11 CYS 54 B ALA 55 n 12 ALA 55 B SER 56 n 13 SER 56 B ASP 57 n 14 ASP 57 B ALA 58 n 15 ALA 58 B LYS 59 n 16 LYS 59 B ALA 60 n 17 ALA 60 B TYR 61 n 18 TYR 61 B GLU 62 n 19 GLU 62 B LYS 63 n 20 LYS 63 B GLU 64 n 21 GLU 64 B VAL 65 n 22 VAL 65 B HIS 66 n 23 HIS 66 B ASN 67 n 24 ASN 67 B VAL 68 n 25 VAL 68 B TRP 69 n 26 TRP 69 B ALA 70 n 27 ALA 70 B THR 71 n 28 THR 71 B HIS 72 n 29 HIS 72 B ALA 73 n 30 ALA 73 B CYS 74 n 31 CYS 74 B VAL 75 n 32 VAL 75 B PRO 76 n 33 PRO 76 B THR 77 n 34 THR 77 B ASP 78 n 35 ASP 78 B PRO 79 n 36 PRO 79 B ASN 80 n 37 ASN 80 B PRO 81 n 38 PRO 81 B GLN 82 n 39 GLN 82 B GLU 83 n 40 GLU 83 B MET 84 n 41 MET 84 B VAL 85 n 42 VAL 85 B LEU 86 n 43 LEU 86 B ALA 87 n 44 ALA 87 B ASN 88 n 45 ASN 88 B VAL 89 n 46 VAL 89 B THR 90 n 47 THR 90 B GLU 91 n 48 GLU 91 B ASN 92 n 49 ASN 92 B PHE 93 n 50 PHE 93 B ASN 94 n 51 ASN 94 B MET 95 n 52 MET 95 B TRP 96 n 53 TRP 96 B LYS 97 n 54 LYS 97 B ASN 98 n 55 ASN 98 B ASP 99 n 56 ASP 99 B MET 100 n 57 MET 100 B VAL 101 n 58 VAL 101 B GLU 102 n 59 GLU 102 B GLN 103 n 60 GLN 103 B MET 104 n 61 MET 104 B HIS 105 n 62 HIS 105 B GLU 106 n 63 GLU 106 B ASP 107 n 64 ASP 107 B ILE 108 n 65 ILE 108 B ILE 109 n 66 ILE 109 B SER 110 n 67 SER 110 B LEU 111 n 68 LEU 111 B TRP 112 n 69 TRP 112 B ASP 113 n 70 ASP 113 B GLU 114 n 71 GLU 114 B SER 115 n 72 SER 115 B LEU 116 n 73 LEU 116 B LYS 117 n 74 LYS 117 B PRO 118 n 75 PRO 118 B CYS 119 n 76 CYS 119 B VAL 120 n 77 VAL 120 B LYS 121 n 78 LYS 121 B LEU 122 n 79 LEU 122 B THR 123 n 80 THR 123 B GLY 124 n 81 GLY 124 B GLY 198 n 82 GLY 198 B SER 199 n 83 SER 199 B ALA 200 n 84 ALA 200 B ILE 201 n 85 ILE 201 B THR 202 n 86 THR 202 B GLN 203 n 87 GLN 203 B ALA 204 n 88 ALA 204 B CYS 205 n 89 CYS 205 B PRO 206 n 90 PRO 206 B LYS 207 n 91 LYS 207 B VAL 208 n 92 VAL 208 B SER 209 n 93 SER 209 B PHE 210 n 94 PHE 210 B ASP 211 n 95 ASP 211 B PRO 212 n 96 PRO 212 B ILE 213 n 97 ILE 213 B PRO 214 n 98 PRO 214 B LEU 215 n 99 LEU 215 B HIS 216 n 100 HIS 216 B TYR 217 n 101 TYR 217 B CYS 218 n 102 CYS 218 B ALA 219 n 103 ALA 219 B PRO 220 n 104 PRO 220 B ALA 221 n 105 ALA 221 B GLY 222 n 106 GLY 222 B PHE 223 n 107 PHE 223 B ALA 224 n 108 ALA 224 B ILE 225 n 109 ILE 225 B LEU 226 n 110 LEU 226 B LYS 227 n 111 LYS 227 B CYS 228 n 112 CYS 228 B ASN 229 n 113 ASN 229 B ASN 230 n 114 ASN 230 B LYS 231 n 115 LYS 231 B THR 232 n 116 THR 232 B PHE 233 n 117 PHE 233 B ASN 234 n 118 ASN 234 B GLY 235 n 119 GLY 235 B THR 236 n 120 THR 236 B GLY 237 n 121 GLY 237 B PRO 238 n 122 PRO 238 B CYS 239 n 123 CYS 239 B ARG 240 n 124 ARG 240 B ASN 241 n 125 ASN 241 B VAL 242 n 126 VAL 242 B SER 243 n 127 SER 243 B THR 244 n 128 THR 244 B VAL 245 n 129 VAL 245 B GLN 246 n 130 GLN 246 B CYS 247 n 131 CYS 247 B THR 248 n 132 THR 248 B HIS 249 n 133 HIS 249 B GLY 250 n 134 GLY 250 B ILE 251 n 135 ILE 251 B LYS 252 n 136 LYS 252 B PRO 253 n 137 PRO 253 B VAL 254 n 138 VAL 254 B VAL 255 n 139 VAL 255 B SER 256 n 140 SER 256 B THR 257 n 141 THR 257 B GLN 258 n 142 GLN 258 B LEU 259 n 143 LEU 259 B LEU 260 n 144 LEU 260 B LEU 261 n 145 LEU 261 B ASN 262 n 146 ASN 262 B GLY 263 n 147 GLY 263 B SER 264 n 148 SER 264 B LEU 265 n 149 LEU 265 B ALA 266 n 150 ALA 266 B GLU 267 n 151 GLU 267 B GLU 268 n 152 GLU 268 B GLU 269 n 153 GLU 269 B ILE 270 n 154 ILE 270 B ILE 271 n 155 ILE 271 B ILE 272 n 156 ILE 272 B ARG 273 n 157 ARG 273 B SER 274 n 158 SER 274 B GLU 275 n 159 GLU 275 B ASN 276 n 160 ASN 276 B LEU 277 n 161 LEU 277 B THR 278 n 162 THR 278 B ASN 279 n 163 ASN 279 B ASN 280 n 164 ASN 280 B ALA 281 n 165 ALA 281 B LYS 282 n 166 LYS 282 B THR 283 n 167 THR 283 B ILE 284 n 168 ILE 284 B ILE 285 n 169 ILE 285 B VAL 286 n 170 VAL 286 B HIS 287 n 171 HIS 287 B LEU 288 n 172 LEU 288 B ASN 289 n 173 ASN 289 B GLU 290 n 174 GLU 290 B SER 291 n 175 SER 291 B VAL 292 n 176 VAL 292 B ASN 293 n 177 ASN 293 B ILE 294 n 178 ILE 294 B VAL 295 n 179 VAL 295 B CYS 296 n 180 CYS 296 B THR 297 n 181 THR 297 B ARG 298 n 182 ARG 298 B PRO 299 n 183 PRO 299 B ASN 300 n 184 ASN 300 B n 185 317 B n 186 318 B n 187 319 B n 188 320 B n 189 321 B n 190 322 B n 191 323 B n 192 324 B ASN 325 n 193 ASN 325 B ILE 326 n 194 ILE 326 B ARG 327 n 195 ARG 327 B GLN 328 n 196 GLN 328 B ALA 329 n 197 ALA 329 B HIS 330 n 198 HIS 330 B CYS 331 n 199 CYS 331 B ASN 332 n 200 ASN 332 B ILE 333 n 201 ILE 333 B ASN 334 n 202 ASN 334 B GLU 335 n 203 GLU 335 B SER 336 n 204 SER 336 B LYS 337 n 205 LYS 337 B TRP 338 n 206 TRP 338 B ASN 339 n 207 ASN 339 B ASN 340 n 208 ASN 340 B THR 341 n 209 THR 341 B LEU 342 n 210 LEU 342 B GLN 343 n 211 GLN 343 B LYS 344 n 212 LYS 344 B VAL 345 n 213 VAL 345 B GLY 346 n 214 GLY 346 B GLU 347 n 215 GLU 347 B GLU 348 n 216 GLU 348 B LEU 349 n 217 LEU 349 B ALA 350 n 218 ALA 350 B LYS 351 n 219 LYS 351 B HIS 352 n 220 HIS 352 B PHE 353 n 221 PHE 353 B PRO 354 n 222 PRO 354 B SER 356 n 223 SER 356 B LYS 357 n 224 LYS 357 B THR 358 n 225 THR 358 B ILE 359 n 226 ILE 359 B LYS 360 n 227 LYS 360 B PHE 361 n 228 PHE 361 B GLU 362 n 229 GLU 362 B PRO 363 n 230 PRO 363 B SER 364 n 231 SER 364 B SER 365 n 232 SER 365 B GLY 366 n 233 GLY 366 B GLY 367 n 234 GLY 367 B ASP 368 n 235 ASP 368 B LEU 369 n 236 LEU 369 B GLU 370 n 237 GLU 370 B ILE 371 n 238 ILE 371 B THR 372 n 239 THR 372 B THR 373 n 240 THR 373 B HIS 374 n 241 HIS 374 B SER 375 n 242 SER 375 B PHE 376 n 243 PHE 376 B ASN 377 n 244 ASN 377 B CYS 378 n 245 CYS 378 B ARG 379 n 246 ARG 379 B GLY 380 n 247 GLY 380 B GLU 381 n 248 GLU 381 B PHE 382 n 249 PHE 382 B PHE 383 n 250 PHE 383 B TYR 384 n 251 TYR 384 B CYS 385 n 252 CYS 385 B ASN 386 n 253 ASN 386 B THR 387 n 254 THR 387 B SER 388 n 255 SER 388 B ASP 389 n 256 ASP 389 B LEU 390 n 257 LEU 390 B PHE 391 n 258 PHE 391 B ASN 392 n 259 ASN 392 B GLY 393 n 260 GLY 393 B THR 394 n 261 THR 394 B TYR 395 n 262 TYR 395 B ARG 396 n 263 ARG 396 B ASN 397 n 264 ASN 397 B GLY 398 n 265 GLY 398 B THR 399 n 266 THR 399 B TYR 403 n 267 TYR 403 B ASN 404 n 268 ASN 404 B HIS 405 n 269 HIS 405 B THR 406 n 270 THR 406 B GLY 407 n 271 GLY 407 B ARG 408 n 272 ARG 408 B SER 409 n 273 SER 409 B SER 410 n 274 SER 410 B ASN 411 n 275 ASN 411 B GLY 412 n 276 GLY 412 B THR 413 n 277 THR 413 B ILE 414 n 278 ILE 414 B THR 415 n 279 THR 415 B LEU 416 n 280 LEU 416 B GLN 417 n 281 GLN 417 B CYS 418 n 282 CYS 418 B LYS 419 n 283 LYS 419 B ILE 420 n 284 ILE 420 B LYS 421 n 285 LYS 421 B GLN 422 n 286 GLN 422 B ILE 423 n 287 ILE 423 B ILE 424 n 288 ILE 424 B ASN 425 n 289 ASN 425 B MET 426 n 290 MET 426 B TRP 427 n 291 TRP 427 B GLN 428 n 292 GLN 428 B GLU 429 n 293 GLU 429 B VAL 430 n 294 VAL 430 B GLY 431 n 295 GLY 431 B ARG 432 n 296 ARG 432 B ALA 433 n 297 ALA 433 B ILE 434 n 298 ILE 434 B TYR 435 n 299 TYR 435 B ALA 436 n 300 ALA 436 B PRO 437 n 301 PRO 437 B PRO 438 n 302 PRO 438 B ILE 439 n 303 ILE 439 B GLU 440 n 304 GLU 440 B GLY 441 n 305 GLY 441 B GLU 442 n 306 GLU 442 B ILE 443 n 307 ILE 443 B THR 444 n 308 THR 444 B CYS 445 n 309 CYS 445 B ASN 446 n 310 ASN 446 B SER 447 n 311 SER 447 B ASN 448 n 312 ASN 448 B ILE 449 n 313 ILE 449 B THR 450 n 314 THR 450 B GLY 451 n 315 GLY 451 B LEU 452 n 316 LEU 452 B LEU 453 n 317 LEU 453 B LEU 454 n 318 LEU 454 B LEU 455 n 319 LEU 455 B ARG 456 n 320 ARG 456 B ASP 457 n 321 ASP 457 B GLY 458 n 322 GLY 458 B GLY 459 n 323 GLY 459 B n 324 A 459 B n 325 B 459 B n 326 C 459 B n 327 D 459 B n 328 E 459 B ASN 463 n 329 ASN 463 B ASP 464 n 330 ASP 464 B THR 465 n 331 THR 465 B GLU 466 n 332 GLU 466 B THR 467 n 333 THR 467 B PHE 468 n 334 PHE 468 B ARG 469 n 335 ARG 469 B PRO 470 n 336 PRO 470 B GLY 471 n 337 GLY 471 B GLY 472 n 338 GLY 472 B GLY 473 n 339 GLY 473 B ASP 474 n 340 ASP 474 B MET 475 n 341 MET 475 B ARG 476 n 342 ARG 476 B ASP 477 n 343 ASP 477 B ASN 478 n 344 ASN 478 B TRP 479 n 345 TRP 479 B ARG 480 n 346 ARG 480 B SER 481 n 347 SER 481 B GLU 482 n 348 GLU 482 B LEU 483 n 349 LEU 483 B TYR 484 n 350 TYR 484 B LYS 485 n 351 LYS 485 B TYR 486 n 352 TYR 486 B LYS 487 n 353 LYS 487 B VAL 488 n 354 VAL 488 B VAL 489 n 355 VAL 489 B GLU 490 n 356 GLU 490 B ILE 491 n 357 ILE 491 B LYS 492 n 358 LYS 492 B 0.2534 -0.4571 0.0676 0.8178 -0.0069 1.8258 -0.0591 0.3220 -0.4139 0.0788 0.1271 -0.2373 0.1554 0.6606 0.1807 0.6252 0.0785 0.1254 0.4908 -0.0105 0.3678 refined -3.4264 -21.0186 15.9902 X-RAY DIFFRACTION 0.7367 0.4576 -0.6224 3.1911 0.3564 3.9861 0.0802 0.1189 0.1491 -0.3247 -0.2455 -1.2860 -0.1686 0.8808 0.0729 0.1962 0.0089 0.2068 0.2981 0.1019 0.0158 refined -8.8785 -12.3600 19.3471 X-RAY DIFFRACTION 1.9585 0.4254 0.8096 2.7002 -0.2870 2.2049 -0.0397 -0.2925 0.0386 0.4175 -0.1763 -0.0311 -0.2854 -0.1856 0.0366 0.2380 -0.0176 0.0003 0.1489 -0.0014 -0.0215 refined -24.0527 -9.4899 33.1623 X-RAY DIFFRACTION 0.3476 0.6224 0.5710 1.1227 1.0660 1.3292 0.1869 -0.3703 -0.6337 0.1230 0.3006 -0.3217 -0.1249 0.7444 -0.5121 -0.0216 0.0127 0.0878 0.6545 -0.0644 0.4944 refined -4.1492 -10.4032 23.8999 X-RAY DIFFRACTION 0.9880 0.1907 0.4541 1.1092 0.1617 0.2121 -0.3359 0.5726 0.2465 -0.8102 0.0173 0.2423 -0.5938 -0.0111 0.3451 0.9790 -0.1067 -0.3542 0.5594 0.1261 0.4045 refined -26.2647 -39.5909 2.5853 X-RAY DIFFRACTION 1.5806 0.6377 0.3479 1.4574 -0.4249 1.4900 -0.2131 0.1252 0.4187 -0.8968 0.3854 0.6599 0.3223 -0.2913 -0.0590 0.4525 -0.0726 -0.5179 0.1881 0.1900 0.4126 refined -23.6067 -46.9869 9.9730 X-RAY DIFFRACTION 4.8021 1.0237 -2.3830 2.2641 -1.3877 2.1443 -0.1949 -1.1125 0.5320 -0.2061 0.2812 0.3581 0.3472 0.3894 0.0012 0.1760 0.0976 -0.1655 0.2814 -0.1706 0.1704 refined -13.7273 -46.3817 28.2304 X-RAY DIFFRACTION 0.1905 0.2166 -0.7354 1.2924 0.5040 4.5615 -0.2633 0.4914 0.4418 -0.5338 0.0943 0.7226 0.2832 -0.8275 -0.2369 0.2055 -0.1404 -0.4969 0.3869 0.2671 0.6727 refined -29.6768 -47.0172 13.1459 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 chain A and resi 44:89 X-RAY DIFFRACTION 2 chain A and resi 90:254 X-RAY DIFFRACTION 3 chain A and resi 255:472 X-RAY DIFFRACTION 4 chain A and resi 473:492 X-RAY DIFFRACTION 5 chain B and resi 44:89 X-RAY DIFFRACTION 6 chain B and resi 90:254 X-RAY DIFFRACTION 7 chain B and resi 255:472 X-RAY DIFFRACTION 8 chain B and resi 473:492 author_and_software_defined_assembly PISA 2 dimeric author_and_software_defined_assembly PISA 2 dimeric B ASN 262 GLYCOSYLATION SITE B ASN 146 ASN A ASN 289 GLYCOSYLATION SITE A ASN 173 ASN A ASN 339 GLYCOSYLATION SITE A ASN 207 ASN B ASN 289 GLYCOSYLATION SITE B ASN 173 ASN A ASN 392 GLYCOSYLATION SITE A ASN 259 ASN B ASN 392 GLYCOSYLATION SITE B ASN 259 ASN A ASN 262 GLYCOSYLATION SITE A ASN 146 ASN A ASN 448 GLYCOSYLATION SITE A ASN 312 ASN A ASN 276 GLYCOSYLATION SITE A ASN 160 ASN A ASN 386 GLYCOSYLATION SITE A ASN 253 ASN B ASN 234 GLYCOSYLATION SITE B ASN 118 ASN B ASN 386 GLYCOSYLATION SITE B ASN 253 ASN 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O VAL 75 A O VAL 32 A N CYS 54 A N CYS 11 A N PHE 53 A N PHE 10 A O CYS 218 A O CYS 102 A N PHE 93 A N PHE 50 A O GLY 237 A O GLY 121 A O ILE 201 A O ILE 85 A N LYS 121 A N LYS 78 A N VAL 120 A N VAL 77 A O ILE 434 A O ILE 298 A O ALA 433 A O ALA 297 A N ILE 424 A N ILE 288 A O VAL 245 A O VAL 129 A N ILE 225 A N ILE 109 A N LEU 226 A N LEU 110 A O LYS 487 A O LYS 353 A N LEU 260 A N LEU 144 A O GLY 451 A O GLY 315 A O CYS 445 A O CYS 309 A N CYS 296 A N CYS 180 A N THR 297 A N THR 181 A O HIS 330 A O HIS 198 A N ILE 333 A N ILE 201 A O ILE 414 A O ILE 278 A O LYS 419 A O LYS 283 A N TYR 384 A N TYR 251 A O GLU 381 A O GLU 248 A N CYS 378 A N CYS 245 A N ARG 273 A N ARG 157 A O ILE 285 A O ILE 169 A N CYS 296 A N CYS 180 A O CYS 445 A O CYS 309 A N LEU 455 A N LEU 319 A O ARG 469 A O ARG 335 A O PHE 468 A O PHE 334 A N LYS 360 A N LYS 227 A N PHE 361 A N PHE 228 A O GLY 393 A O GLY 260 B O VAL 75 B O VAL 32 B N SER 56 B N SER 13 B N PHE 53 B N PHE 10 B O CYS 218 B O CYS 102 B N PHE 93 B N PHE 50 B O GLY 237 B O GLY 121 B O ILE 201 B O ILE 85 B N LYS 121 B N LYS 78 B N VAL 120 B N VAL 77 B O ILE 434 B O ILE 298 B O ALA 433 B O ALA 297 B N ILE 424 B N ILE 288 B O VAL 245 B O VAL 129 B N ILE 225 B N ILE 109 B N LEU 226 B N LEU 110 B O LYS 487 B O LYS 353 B N LEU 260 B N LEU 144 B O GLY 451 B O GLY 315 B O SER 447 B O SER 311 B N ILE 294 B N ILE 178 B N THR 297 B N THR 181 B O HIS 330 B O HIS 198 B N ILE 333 B N ILE 201 B O ILE 414 B O ILE 278 B O LYS 419 B O LYS 283 B N TYR 384 B N TYR 251 B O GLU 381 B O GLU 248 B N CYS 378 B N CYS 245 B N ILE 271 B N ILE 155 B O HIS 287 B O HIS 171 B N ILE 294 B N ILE 178 B O SER 447 B O SER 311 B N LEU 455 B N LEU 319 B O ARG 469 B O ARG 335 B O PHE 468 B O PHE 334 B N LYS 360 B N LYS 227 B N ILE 359 B N ILE 226 B O TYR 395 B O TYR 262 1 B HOH 620 S HOH 1 A O1 NAG 501 C O1 NAG 1 1 N 1 A ASN 317 A ASN 185 1 Y 1 A GLY 318 A GLY 186 1 Y 1 A GLY 319 A GLY 187 1 Y 1 A SER 320 A SER 188 1 Y 1 A GLY 321 A GLY 189 1 Y 1 A SER 322 A SER 190 1 Y 1 A GLY 323 A GLY 191 1 Y 1 A GLY 324 A GLY 192 1 Y A 1 A GLN 459 A GLN 324 1 Y B 1 A SER 459 A SER 325 1 Y C 1 A ASN 459 A ASN 326 1 Y D 1 A GLU 459 A GLU 327 1 Y E 1 A THR 459 A THR 328 1 Y 1 B ASN 317 B ASN 185 1 Y 1 B GLY 318 B GLY 186 1 Y 1 B GLY 319 B GLY 187 1 Y 1 B SER 320 B SER 188 1 Y 1 B GLY 321 B GLY 189 1 Y 1 B SER 322 B SER 190 1 Y 1 B GLY 323 B GLY 191 1 Y 1 B GLY 324 B GLY 192 1 Y A 1 B GLN 459 B GLN 324 1 Y B 1 B SER 459 B SER 325 1 Y C 1 B ASN 459 B ASN 326 1 Y D 1 B GLU 459 B GLU 327 1 Y E 1 B THR 459 B THR 328 1 Y 1 A A ND2 C1 ASN NAG 234 501 1.11 1 A A ND2 O5 ASN NAG 339 505 2.06 1 A A ND2 O5 ASN NAG 234 501 2.10 1 A A CG C1 ASN NAG 234 501 2.18 1 A A CG ND1 HIS HIS 287 287 -0.105 0.015 1.369 1.264 N 1 A A NE2 CD2 HIS HIS 287 287 -0.081 0.011 1.373 1.292 N 1 A LYS 46 -164.64 -167.37 1 A ASP 57 -93.52 48.78 1 A SER 115 -61.80 -78.71 1 A ASP 211 -172.25 102.30 1 A PRO 220 -59.63 171.91 1 A LYS 231 -78.15 30.31 1 A THR 232 -151.27 6.59 1 A CYS 239 -160.94 102.66 1 A THR 248 -100.95 -167.65 1 A GLN 258 76.84 -48.03 1 A GLU 268 -87.38 -100.95 1 A THR 341 -55.02 -74.71 1 A SER 356 -176.79 83.50 1 A SER 365 -36.38 -70.22 1 A HIS 405 -109.99 -153.71 1 A THR 406 -175.11 135.87 1 A LYS 487 -168.42 118.05 1 B LYS 46 -166.28 -169.55 1 B LEU 52 -76.42 -167.26 1 B ASN 80 -150.02 80.80 1 B PRO 212 -47.10 154.96 1 B PRO 220 -57.86 173.91 1 B THR 248 -110.13 -163.33 1 B GLN 258 70.75 -71.61 1 B GLU 268 -99.29 -103.70 1 B ASN 276 -166.64 99.25 1 B THR 341 -57.45 -72.02 1 B SER 356 -161.63 93.47 1 B HIS 405 -107.81 -148.79 1 B THR 465 -161.41 97.06 1 B LYS 487 -171.00 111.51 -18.1429 -0.0000 -0.0000 -15.7200 -0.0000 -16.8220 0.2954 0.2394 0.2422 2.7 44.837 861 23335 17156 5.02 73.52 1.000 1.000 0.44 1 0.00 MOLECULAR REPLACEMENT 30.59 0.72 1.00 ML FLAT BULK SOLVENT MODEL 25.118 0.292 2.7 44.837 104 5742 228 0 5410 0.010 5964 0.699 8098 16.654 2240 0.044 934 0.003 1014 0.4612 0.3690 2.8422 43 770 21.00 0.3915 0.3271 3.0616 95 1712 47.00 0.4142 0.2725 3.3696 134 2764 75.00 0.2626 0.2199 3.8570 190 3538 97.00 0.2474 0.2022 4.8584 210 3684 100.00 0.2778 0.2414 44.8434 189 3827 99.00 2.7 50 3TGS 23729 17560 0.0 0.0 0.116 0.096 1 26.2 5.2 74.0 0.222 2.70 2.80 0.217 1 3.6 26.3 0.217 2.80 2.91 0.172 1 3.4 33.5 0.195 2.91 3.04 0.174 1 3.4 44.6 0.188 3.04 3.20 0.172 1 3.7 60.1 0.192 3.20 3.40 0.187 1 4.5 79.3 0.227 3.40 3.66 0.246 1 5.7 94.5 0.204 3.66 4.03 0.170 1 6.6 99.1 0.144 4.03 4.62 0.122 1 6.5 99.8 0.111 4.62 5.81 0.113 1 6.1 99.7 0.066 5.81 50.0 0.070 1 5.5 98.9 refinement Paul D. Adams PDAdams@lbl.gov C++ http://www.phenix-online.org/ PHENIX package 1.6.4_486 data extraction PDB deposit@deposit.rcsb.org June 10, 2010 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.10 data reduction DENZO data scaling SCALEPACK HIV-1 clade C1086 gp120 core Crystal structure of HIV-1 clade C strain C1086 gp120 core in complex with NBD-556 1 N N 1 N N 2 N N 2 N N 2 N N 2 N N 2 N N 2 N N 3 N N 2 N N 2 N N 2 N N 3 N N 2 N N 2 N N 2 N N 2 N N 4 N N 4 N N A GLU 64 A GLU 21 HELX_P A CYS 74 A CYS 31 1 1 11 A ASN 98 A ASN 55 HELX_P A SER 115 A SER 72 1 2 18 A GLU 335 A GLU 203 HELX_P A PHE 353 A PHE 221 1 3 19 A ASP 368 A ASP 235 HELX_P A THR 373 A THR 240 1 4 6 A MET 475 A MET 341 HELX_P A TYR 484 A TYR 350 1 5 10 B GLU 64 B GLU 21 HELX_P B CYS 74 B CYS 31 1 6 11 B ASN 98 B ASN 55 HELX_P B LEU 116 B LEU 73 1 7 19 B GLU 335 B GLU 203 HELX_P B HIS 352 B HIS 220 1 8 18 B ASP 368 B ASP 235 HELX_P B THR 373 B THR 240 1 9 6 B ASP 474 B ASP 340 HELX_P B TYR 484 B TYR 350 1 10 11 disulf 2.033 A CYS 54 A SG CYS 11 1_555 A CYS 74 A SG CYS 31 1_555 disulf 2.035 A CYS 119 A SG CYS 76 1_555 A CYS 205 A SG CYS 89 1_555 disulf 2.031 A CYS 218 A SG CYS 102 1_555 A CYS 247 A SG CYS 131 1_555 disulf 2.032 A CYS 228 A SG CYS 112 1_555 A CYS 239 A SG CYS 123 1_555 disulf 2.035 A CYS 296 A SG CYS 180 1_555 A CYS 331 A SG CYS 199 1_555 disulf 2.028 A CYS 378 A SG CYS 245 1_555 A CYS 445 A SG CYS 309 1_555 disulf 2.025 A CYS 385 A SG CYS 252 1_555 A CYS 418 A SG CYS 282 1_555 disulf 2.034 B CYS 54 B SG CYS 11 1_555 B CYS 74 B SG CYS 31 1_555 disulf 2.030 B CYS 119 B SG CYS 76 1_555 B CYS 205 B SG CYS 89 1_555 disulf 2.033 B CYS 218 B SG CYS 102 1_555 B CYS 247 B SG CYS 131 1_555 disulf 2.031 B CYS 228 B SG CYS 112 1_555 B CYS 239 B SG CYS 123 1_555 disulf 2.035 B CYS 296 B SG CYS 180 1_555 B CYS 331 B SG CYS 199 1_555 disulf 2.033 B CYS 378 B SG CYS 245 1_555 B CYS 445 B SG CYS 309 1_555 disulf 2.030 B CYS 385 B SG CYS 252 1_555 B CYS 418 B SG CYS 282 1_555 covale 1.438 one N-Glycosylation A ASN 262 A ND2 ASN 146 1_555 A NAG 502 D C1 NAG 1_555 covale 1.443 one N-Glycosylation A ASN 276 A ND2 ASN 160 1_555 A NAG 503 E C1 NAG 1_555 covale 1.407 one N-Glycosylation A ASN 289 A ND2 ASN 173 1_555 A NAG 504 F C1 NAG 1_555 covale 1.415 one N-Glycosylation A ASN 339 A ND2 ASN 207 1_555 A NAG 505 G C1 NAG 1_555 covale 1.443 one N-Glycosylation A ASN 386 A ND2 ASN 253 1_555 A NAG 506 H C1 NAG 1_555 covale 1.436 one N-Glycosylation A ASN 392 A ND2 ASN 259 1_555 A NAG 508 J C1 NAG 1_555 covale 1.439 one N-Glycosylation A ASN 448 A ND2 ASN 312 1_555 A NAG 509 K C1 NAG 1_555 covale 1.443 one N-Glycosylation B ASN 234 B ND2 ASN 118 1_555 B NAG 501 L C1 NAG 1_555 covale 1.390 one N-Glycosylation B ASN 262 B ND2 ASN 146 1_555 B NAG 503 N C1 NAG 1_555 covale 1.436 one N-Glycosylation B ASN 289 B ND2 ASN 173 1_555 B NAG 504 O C1 NAG 1_555 covale 1.498 one N-Glycosylation B ASN 386 B ND2 ASN 253 1_555 B NAG 505 P C1 NAG 1_555 covale 1.437 one N-Glycosylation B ASN 392 B ND2 ASN 259 1_555 B NAG 506 Q C1 NAG 1_555 VIRAL PROTEIN HIV-1 gp120, clade C1086, complex, NBD-556, VIRAL PROTEIN A ASP 78 A ASP 35 1 A PRO 79 A PRO 36 -1.32 B ASP 78 B ASP 35 1 B PRO 79 B PRO 36 -6.76 3TGS PDB 1 3TGS 44 492 3TGS 44 492 3TGS A 1 1 358 44 492 3TGS 44 492 3TGS B 1 1 358 3 2 4 3 7 6 3 2 4 3 7 6 parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel A VAL 75 A VAL 32 A PRO 76 A PRO 33 A PHE 53 A PHE 10 A SER 56 A SER 13 A LEU 215 A LEU 99 A CYS 218 A CYS 102 A PHE 93 A PHE 50 A ASN 94 A ASN 51 A THR 236 A THR 120 A GLY 237 A GLY 121 A ALA 200 A ALA 84 A THR 202 A THR 86 A VAL 120 A VAL 77 A LEU 122 A LEU 79 A ARG 432 A ARG 296 A ILE 434 A ILE 298 A ILE 423 A ILE 287 A ASN 425 A ASN 289 A THR 244 A THR 128 A VAL 245 A VAL 129 A PHE 223 A PHE 107 A LYS 227 A LYS 111 A TYR 486 A TYR 352 A GLU 490 A GLU 356 A LEU 259 A LEU 143 A LEU 261 A LEU 145 A ILE 443 A ILE 307 A ARG 456 A ARG 320 A ILE 284 A ILE 168 A ARG 298 A ARG 182 A GLN 328 A GLN 196 A ASN 334 A ASN 202 A THR 413 A THR 277 A ILE 420 A ILE 284 A GLU 381 A GLU 248 A CYS 385 A CYS 252 A HIS 374 A HIS 241 A CYS 378 A CYS 245 A ILE 271 A ILE 155 A ARG 273 A ARG 157 A ILE 284 A ILE 168 A ARG 298 A ARG 182 A ILE 443 A ILE 307 A ARG 456 A ARG 320 A THR 465 A THR 331 A PRO 470 A PRO 336 A THR 358 A THR 225 A PHE 361 A PHE 228 A GLY 393 A GLY 260 A THR 394 A THR 261 B VAL 75 B VAL 32 B PRO 76 B PRO 33 B PHE 53 B PHE 10 B SER 56 B SER 13 B HIS 216 B HIS 100 B CYS 218 B CYS 102 B GLU 91 B GLU 48 B ASN 94 B ASN 51 B THR 236 B THR 120 B CYS 239 B CYS 123 B SER 199 B SER 83 B THR 202 B THR 86 B VAL 120 B VAL 77 B THR 123 B THR 80 B ARG 432 B ARG 296 B ILE 434 B ILE 298 B ILE 423 B ILE 287 B ASN 425 B ASN 289 B VAL 242 B VAL 126 B VAL 245 B VAL 129 B PHE 223 B PHE 107 B CYS 228 B CYS 112 B TYR 486 B TYR 352 B GLU 490 B GLU 356 B LEU 259 B LEU 143 B LEU 261 B LEU 145 B ILE 443 B ILE 307 B ARG 456 B ARG 320 B ILE 284 B ILE 168 B ARG 298 B ARG 182 B GLN 328 B GLN 196 B ASN 334 B ASN 202 B THR 413 B THR 277 B LYS 421 B LYS 285 B GLU 381 B GLU 248 B CYS 385 B CYS 252 B HIS 374 B HIS 241 B CYS 378 B CYS 245 B ILE 271 B ILE 155 B ARG 273 B ARG 157 B ILE 284 B ILE 168 B ARG 298 B ARG 182 B ILE 443 B ILE 307 B ARG 456 B ARG 320 B THR 465 B THR 331 B PRO 470 B PRO 336 B THR 358 B THR 225 B PHE 361 B PHE 228 B GLY 393 B GLY 260 B TYR 395 B TYR 262 20 C 2 2 21