0.024435
0.000000
0.002823
0.000000
0.010220
0.000000
0.000000
0.000000
0.019459
0.00000
0.00000
0.00000
Ha, B.H.
Boggon, T.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
96.59
90.00
40.925
97.851
51.733
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C10 H17 N6 O13 P3
522.196
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
P
N
138
N
O
N
139
N
O
N
140
N
O
N
141
N
N
N
142
R
P
N
143
N
O
N
144
N
O
N
145
N
O
N
146
S
P
N
147
N
O
N
148
N
O
N
149
N
O
N
150
N
C
N
151
R
C
N
152
N
O
N
153
S
C
N
154
N
O
N
155
R
C
N
156
N
O
N
157
R
C
Y
158
N
N
Y
159
N
C
Y
160
N
N
Y
161
N
C
Y
162
N
C
N
163
N
O
Y
164
N
N
Y
165
N
C
N
166
N
N
Y
167
N
N
Y
168
N
C
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
N
N
187
S
C
N
188
N
C
N
189
N
O
N
190
N
C
Y
191
N
C
Y
192
N
N
Y
193
N
C
Y
194
N
C
Y
195
N
N
N
196
N
O
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
N
N
211
S
C
N
212
N
C
N
213
N
O
N
214
S
C
N
215
N
C
N
216
N
C
N
217
N
C
N
218
N
O
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
N
N
233
S
C
N
234
N
C
N
235
N
O
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
C
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
N
N
255
S
C
N
256
N
C
N
257
N
O
N
258
N
C
N
259
N
C
N
260
N
C
N
261
N
C
N
262
N
N
N
263
N
O
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
N
N
280
S
C
N
281
N
C
N
282
N
O
N
283
N
C
N
284
N
C
N
285
N
S
N
286
N
C
N
287
N
O
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
MG
N
300
N
N
N
301
S
C
N
302
N
C
N
303
N
O
N
304
N
C
Y
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
C
Y
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
N
C
N
328
N
C
N
329
N
C
N
330
N
O
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
N
N
341
S
C
N
342
N
C
N
343
N
O
N
344
N
C
N
345
N
O
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
N
N
355
S
C
N
356
N
C
N
357
N
O
N
358
R
C
N
359
N
O
N
360
N
C
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
N
N
372
S
C
N
373
N
C
N
374
N
O
N
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
N
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
N
385
N
O
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
N
N
399
S
C
N
400
N
C
N
401
N
O
N
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
Y
408
N
C
N
409
N
O
N
410
N
O
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
N
N
423
S
C
N
424
N
C
N
425
N
O
N
426
N
C
N
427
N
C
N
428
N
C
N
429
N
O
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
doub
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
Y
164
N
sing
Y
165
N
sing
Y
166
N
doub
N
167
N
sing
Y
168
N
sing
Y
169
N
sing
Y
170
N
doub
N
171
N
doub
Y
172
N
sing
Y
173
N
sing
N
174
N
sing
N
175
N
sing
Y
176
N
doub
N
177
N
sing
N
178
N
sing
Y
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
Y
191
N
sing
Y
192
N
doub
Y
193
N
doub
N
194
N
sing
Y
195
N
sing
N
196
N
sing
Y
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
doub
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
Y
299
N
doub
Y
300
N
sing
Y
301
N
sing
N
302
N
sing
Y
303
N
doub
N
304
N
sing
Y
305
N
doub
N
306
N
sing
Y
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
doub
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
doub
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
doub
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
doub
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
Y
368
N
doub
Y
369
N
sing
Y
370
N
sing
N
371
N
sing
Y
372
N
doub
Y
373
N
sing
Y
374
N
sing
N
375
N
sing
Y
376
N
sing
Y
377
N
doub
N
378
N
sing
Y
379
N
doub
N
380
N
sing
Y
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
doub
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
Y
396
N
doub
Y
397
N
sing
Y
398
N
sing
N
399
N
sing
Y
400
N
doub
N
401
N
sing
Y
402
N
doub
N
403
N
sing
Y
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
US
Nat.Genet.
9999
1061-4036
44
1006
1014
10.1038/ng.2359
22842228
Exome sequencing identifies recurrent somatic RAC1 mutations in melanoma.
2012
10.2210/pdb3th5/pdb
pdb_00003th5
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2011-08-12
ADSC QUANTUM 315
SINGLE WAVELENGTH
M
x-ray
1
0.97921
1.0
24-ID-E
APS
0.97921
SYNCHROTRON
APS BEAMLINE 24-ID-E
22734.041
Ras-related C3 botulinum toxin substrate 1
UNP residues 2-177
2
man
polymer
522.196
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
2
syn
non-polymer
24.305
MAGNESIUM ION
2
syn
non-polymer
18.015
water
23
nat
water
Cell migration-inducing gene 5 protein, Ras-like protein TC25, p21-Rac1
no
no
MGSSHHHHHHSSGLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNL
GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK
LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL
MGSSHHHHHHSSGLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNL
GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK
LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
RAC1, TC25, MIG5
9606
Homo sapiens
469008
Escherichia coli
BL21(DE3)
modified pET-28
1
2.26
45.65
VAPOR DIFFUSION, HANGING DROP
7.5
22% PEG4000, 7% isopropanol, 0.1M HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K
294
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_ncs_dom_lim
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2012-07-18
1
1
2012-08-29
1
2
2012-09-19
1
3
2023-09-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ncs_dom_lim.beg_auth_comp_id
_struct_ncs_dom_lim.beg_label_asym_id
_struct_ncs_dom_lim.beg_label_comp_id
_struct_ncs_dom_lim.beg_label_seq_id
_struct_ncs_dom_lim.end_auth_comp_id
_struct_ncs_dom_lim.end_label_asym_id
_struct_ncs_dom_lim.end_label_comp_id
_struct_ncs_dom_lim.end_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2011-08-18
REL
REL
GNP
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
MG
MAGNESIUM ION
HOH
water
3SBD
PDB ENTRY 3SBD
PDB
experimental model
GNP
1001
2
GNP
GNP
1001
A
MG
1002
3
MG
MG
1002
A
GNP
1001
2
GNP
GNP
1001
B
MG
1002
3
MG
MG
1002
B
HOH
2
4
HOH
HOH
178
A
HOH
4
4
HOH
HOH
179
A
HOH
6
4
HOH
HOH
180
A
HOH
7
4
HOH
HOH
181
A
HOH
8
4
HOH
HOH
182
A
HOH
9
4
HOH
HOH
183
A
HOH
12
4
HOH
HOH
184
A
HOH
13
4
HOH
HOH
185
A
HOH
18
4
HOH
HOH
186
A
HOH
22
4
HOH
HOH
187
A
HOH
23
4
HOH
HOH
188
A
HOH
1
4
HOH
HOH
178
B
HOH
3
4
HOH
HOH
179
B
HOH
5
4
HOH
HOH
180
B
HOH
10
4
HOH
HOH
181
B
HOH
11
4
HOH
HOH
182
B
HOH
14
4
HOH
HOH
183
B
HOH
15
4
HOH
HOH
184
B
HOH
16
4
HOH
HOH
185
B
HOH
17
4
HOH
HOH
186
B
HOH
19
4
HOH
HOH
187
B
HOH
20
4
HOH
HOH
188
B
HOH
21
4
HOH
HOH
189
B
n
1
-26
A
n
2
-25
A
n
3
-24
A
n
4
-23
A
n
5
-22
A
n
6
-21
A
n
7
-20
A
n
8
-19
A
n
9
-18
A
n
10
-17
A
n
11
-16
A
n
12
-15
A
n
13
-14
A
n
14
-13
A
n
15
-12
A
n
16
-11
A
n
17
-10
A
n
18
-9
A
n
19
-8
A
n
20
-7
A
n
21
-6
A
n
22
-5
A
n
23
-4
A
n
24
-3
A
n
25
-2
A
n
26
-1
A
n
27
0
A
n
28
1
A
GLN
2
n
29
GLN
2
A
ALA
3
n
30
ALA
3
A
ILE
4
n
31
ILE
4
A
LYS
5
n
32
LYS
5
A
CYS
6
n
33
CYS
6
A
VAL
7
n
34
VAL
7
A
VAL
8
n
35
VAL
8
A
VAL
9
n
36
VAL
9
A
GLY
10
n
37
GLY
10
A
ASP
11
n
38
ASP
11
A
GLY
12
n
39
GLY
12
A
ALA
13
n
40
ALA
13
A
VAL
14
n
41
VAL
14
A
GLY
15
n
42
GLY
15
A
LYS
16
n
43
LYS
16
A
THR
17
n
44
THR
17
A
CYS
18
n
45
CYS
18
A
LEU
19
n
46
LEU
19
A
LEU
20
n
47
LEU
20
A
ILE
21
n
48
ILE
21
A
SER
22
n
49
SER
22
A
TYR
23
n
50
TYR
23
A
THR
24
n
51
THR
24
A
THR
25
n
52
THR
25
A
ASN
26
n
53
ASN
26
A
ALA
27
n
54
ALA
27
A
PHE
28
n
55
PHE
28
A
PRO
29
n
56
PRO
29
A
GLY
30
n
57
GLY
30
A
GLU
31
n
58
GLU
31
A
TYR
32
n
59
TYR
32
A
ILE
33
n
60
ILE
33
A
PRO
34
n
61
PRO
34
A
THR
35
n
62
THR
35
A
VAL
36
n
63
VAL
36
A
PHE
37
n
64
PHE
37
A
ASP
38
n
65
ASP
38
A
ASN
39
n
66
ASN
39
A
TYR
40
n
67
TYR
40
A
SER
41
n
68
SER
41
A
ALA
42
n
69
ALA
42
A
ASN
43
n
70
ASN
43
A
VAL
44
n
71
VAL
44
A
MET
45
n
72
MET
45
A
VAL
46
n
73
VAL
46
A
ASP
47
n
74
ASP
47
A
GLY
48
n
75
GLY
48
A
LYS
49
n
76
LYS
49
A
PRO
50
n
77
PRO
50
A
VAL
51
n
78
VAL
51
A
ASN
52
n
79
ASN
52
A
LEU
53
n
80
LEU
53
A
GLY
54
n
81
GLY
54
A
LEU
55
n
82
LEU
55
A
TRP
56
n
83
TRP
56
A
ASP
57
n
84
ASP
57
A
THR
58
n
85
THR
58
A
ALA
59
n
86
ALA
59
A
GLY
60
n
87
GLY
60
A
GLN
61
n
88
GLN
61
A
GLU
62
n
89
GLU
62
A
ASP
63
n
90
ASP
63
A
TYR
64
n
91
TYR
64
A
ASP
65
n
92
ASP
65
A
ARG
66
n
93
ARG
66
A
LEU
67
n
94
LEU
67
A
ARG
68
n
95
ARG
68
A
PRO
69
n
96
PRO
69
A
LEU
70
n
97
LEU
70
A
SER
71
n
98
SER
71
A
TYR
72
n
99
TYR
72
A
PRO
73
n
100
PRO
73
A
GLN
74
n
101
GLN
74
A
THR
75
n
102
THR
75
A
ASP
76
n
103
ASP
76
A
VAL
77
n
104
VAL
77
A
PHE
78
n
105
PHE
78
A
LEU
79
n
106
LEU
79
A
ILE
80
n
107
ILE
80
A
CYS
81
n
108
CYS
81
A
PHE
82
n
109
PHE
82
A
SER
83
n
110
SER
83
A
LEU
84
n
111
LEU
84
A
VAL
85
n
112
VAL
85
A
SER
86
n
113
SER
86
A
PRO
87
n
114
PRO
87
A
ALA
88
n
115
ALA
88
A
SER
89
n
116
SER
89
A
PHE
90
n
117
PHE
90
A
GLU
91
n
118
GLU
91
A
ASN
92
n
119
ASN
92
A
VAL
93
n
120
VAL
93
A
ARG
94
n
121
ARG
94
A
ALA
95
n
122
ALA
95
A
LYS
96
n
123
LYS
96
A
TRP
97
n
124
TRP
97
A
TYR
98
n
125
TYR
98
A
PRO
99
n
126
PRO
99
A
GLU
100
n
127
GLU
100
A
VAL
101
n
128
VAL
101
A
ARG
102
n
129
ARG
102
A
HIS
103
n
130
HIS
103
A
HIS
104
n
131
HIS
104
A
CYS
105
n
132
CYS
105
A
PRO
106
n
133
PRO
106
A
ASN
107
n
134
ASN
107
A
THR
108
n
135
THR
108
A
PRO
109
n
136
PRO
109
A
ILE
110
n
137
ILE
110
A
ILE
111
n
138
ILE
111
A
LEU
112
n
139
LEU
112
A
VAL
113
n
140
VAL
113
A
GLY
114
n
141
GLY
114
A
THR
115
n
142
THR
115
A
LYS
116
n
143
LYS
116
A
LEU
117
n
144
LEU
117
A
ASP
118
n
145
ASP
118
A
LEU
119
n
146
LEU
119
A
ARG
120
n
147
ARG
120
A
ASP
121
n
148
ASP
121
A
ASP
122
n
149
ASP
122
A
LYS
123
n
150
LYS
123
A
ASP
124
n
151
ASP
124
A
THR
125
n
152
THR
125
A
ILE
126
n
153
ILE
126
A
GLU
127
n
154
GLU
127
A
LYS
128
n
155
LYS
128
A
LEU
129
n
156
LEU
129
A
LYS
130
n
157
LYS
130
A
GLU
131
n
158
GLU
131
A
LYS
132
n
159
LYS
132
A
LYS
133
n
160
LYS
133
A
LEU
134
n
161
LEU
134
A
THR
135
n
162
THR
135
A
PRO
136
n
163
PRO
136
A
ILE
137
n
164
ILE
137
A
THR
138
n
165
THR
138
A
TYR
139
n
166
TYR
139
A
PRO
140
n
167
PRO
140
A
GLN
141
n
168
GLN
141
A
GLY
142
n
169
GLY
142
A
LEU
143
n
170
LEU
143
A
ALA
144
n
171
ALA
144
A
MET
145
n
172
MET
145
A
ALA
146
n
173
ALA
146
A
LYS
147
n
174
LYS
147
A
GLU
148
n
175
GLU
148
A
ILE
149
n
176
ILE
149
A
GLY
150
n
177
GLY
150
A
ALA
151
n
178
ALA
151
A
VAL
152
n
179
VAL
152
A
LYS
153
n
180
LYS
153
A
TYR
154
n
181
TYR
154
A
LEU
155
n
182
LEU
155
A
GLU
156
n
183
GLU
156
A
CYS
157
n
184
CYS
157
A
SER
158
n
185
SER
158
A
ALA
159
n
186
ALA
159
A
LEU
160
n
187
LEU
160
A
THR
161
n
188
THR
161
A
GLN
162
n
189
GLN
162
A
ARG
163
n
190
ARG
163
A
GLY
164
n
191
GLY
164
A
LEU
165
n
192
LEU
165
A
LYS
166
n
193
LYS
166
A
THR
167
n
194
THR
167
A
VAL
168
n
195
VAL
168
A
PHE
169
n
196
PHE
169
A
ASP
170
n
197
ASP
170
A
GLU
171
n
198
GLU
171
A
ALA
172
n
199
ALA
172
A
ILE
173
n
200
ILE
173
A
ARG
174
n
201
ARG
174
A
ALA
175
n
202
ALA
175
A
VAL
176
n
203
VAL
176
A
LEU
177
n
204
LEU
177
A
n
1
-26
B
n
2
-25
B
n
3
-24
B
n
4
-23
B
n
5
-22
B
n
6
-21
B
n
7
-20
B
n
8
-19
B
n
9
-18
B
n
10
-17
B
n
11
-16
B
n
12
-15
B
n
13
-14
B
n
14
-13
B
n
15
-12
B
n
16
-11
B
n
17
-10
B
n
18
-9
B
n
19
-8
B
n
20
-7
B
n
21
-6
B
n
22
-5
B
n
23
-4
B
n
24
-3
B
n
25
-2
B
n
26
-1
B
n
27
0
B
n
28
1
B
GLN
2
n
29
GLN
2
B
ALA
3
n
30
ALA
3
B
ILE
4
n
31
ILE
4
B
LYS
5
n
32
LYS
5
B
CYS
6
n
33
CYS
6
B
VAL
7
n
34
VAL
7
B
VAL
8
n
35
VAL
8
B
VAL
9
n
36
VAL
9
B
GLY
10
n
37
GLY
10
B
ASP
11
n
38
ASP
11
B
GLY
12
n
39
GLY
12
B
ALA
13
n
40
ALA
13
B
VAL
14
n
41
VAL
14
B
GLY
15
n
42
GLY
15
B
LYS
16
n
43
LYS
16
B
THR
17
n
44
THR
17
B
CYS
18
n
45
CYS
18
B
LEU
19
n
46
LEU
19
B
LEU
20
n
47
LEU
20
B
ILE
21
n
48
ILE
21
B
SER
22
n
49
SER
22
B
TYR
23
n
50
TYR
23
B
THR
24
n
51
THR
24
B
THR
25
n
52
THR
25
B
ASN
26
n
53
ASN
26
B
ALA
27
n
54
ALA
27
B
PHE
28
n
55
PHE
28
B
PRO
29
n
56
PRO
29
B
n
57
30
B
n
58
31
B
n
59
32
B
n
60
33
B
n
61
34
B
THR
35
n
62
THR
35
B
VAL
36
n
63
VAL
36
B
PHE
37
n
64
PHE
37
B
ASP
38
n
65
ASP
38
B
ASN
39
n
66
ASN
39
B
TYR
40
n
67
TYR
40
B
SER
41
n
68
SER
41
B
ALA
42
n
69
ALA
42
B
ASN
43
n
70
ASN
43
B
VAL
44
n
71
VAL
44
B
MET
45
n
72
MET
45
B
VAL
46
n
73
VAL
46
B
ASP
47
n
74
ASP
47
B
GLY
48
n
75
GLY
48
B
LYS
49
n
76
LYS
49
B
PRO
50
n
77
PRO
50
B
VAL
51
n
78
VAL
51
B
ASN
52
n
79
ASN
52
B
LEU
53
n
80
LEU
53
B
GLY
54
n
81
GLY
54
B
LEU
55
n
82
LEU
55
B
TRP
56
n
83
TRP
56
B
ASP
57
n
84
ASP
57
B
THR
58
n
85
THR
58
B
ALA
59
n
86
ALA
59
B
GLY
60
n
87
GLY
60
B
GLN
61
n
88
GLN
61
B
GLU
62
n
89
GLU
62
B
ASP
63
n
90
ASP
63
B
TYR
64
n
91
TYR
64
B
ASP
65
n
92
ASP
65
B
ARG
66
n
93
ARG
66
B
LEU
67
n
94
LEU
67
B
ARG
68
n
95
ARG
68
B
PRO
69
n
96
PRO
69
B
LEU
70
n
97
LEU
70
B
SER
71
n
98
SER
71
B
TYR
72
n
99
TYR
72
B
PRO
73
n
100
PRO
73
B
GLN
74
n
101
GLN
74
B
THR
75
n
102
THR
75
B
ASP
76
n
103
ASP
76
B
VAL
77
n
104
VAL
77
B
PHE
78
n
105
PHE
78
B
LEU
79
n
106
LEU
79
B
ILE
80
n
107
ILE
80
B
CYS
81
n
108
CYS
81
B
PHE
82
n
109
PHE
82
B
SER
83
n
110
SER
83
B
LEU
84
n
111
LEU
84
B
VAL
85
n
112
VAL
85
B
SER
86
n
113
SER
86
B
PRO
87
n
114
PRO
87
B
ALA
88
n
115
ALA
88
B
SER
89
n
116
SER
89
B
PHE
90
n
117
PHE
90
B
GLU
91
n
118
GLU
91
B
ASN
92
n
119
ASN
92
B
VAL
93
n
120
VAL
93
B
ARG
94
n
121
ARG
94
B
ALA
95
n
122
ALA
95
B
LYS
96
n
123
LYS
96
B
TRP
97
n
124
TRP
97
B
TYR
98
n
125
TYR
98
B
PRO
99
n
126
PRO
99
B
GLU
100
n
127
GLU
100
B
VAL
101
n
128
VAL
101
B
ARG
102
n
129
ARG
102
B
HIS
103
n
130
HIS
103
B
HIS
104
n
131
HIS
104
B
CYS
105
n
132
CYS
105
B
PRO
106
n
133
PRO
106
B
ASN
107
n
134
ASN
107
B
THR
108
n
135
THR
108
B
PRO
109
n
136
PRO
109
B
ILE
110
n
137
ILE
110
B
ILE
111
n
138
ILE
111
B
LEU
112
n
139
LEU
112
B
VAL
113
n
140
VAL
113
B
GLY
114
n
141
GLY
114
B
THR
115
n
142
THR
115
B
LYS
116
n
143
LYS
116
B
LEU
117
n
144
LEU
117
B
ASP
118
n
145
ASP
118
B
LEU
119
n
146
LEU
119
B
ARG
120
n
147
ARG
120
B
ASP
121
n
148
ASP
121
B
ASP
122
n
149
ASP
122
B
LYS
123
n
150
LYS
123
B
ASP
124
n
151
ASP
124
B
THR
125
n
152
THR
125
B
ILE
126
n
153
ILE
126
B
GLU
127
n
154
GLU
127
B
LYS
128
n
155
LYS
128
B
LEU
129
n
156
LEU
129
B
LYS
130
n
157
LYS
130
B
GLU
131
n
158
GLU
131
B
LYS
132
n
159
LYS
132
B
LYS
133
n
160
LYS
133
B
LEU
134
n
161
LEU
134
B
THR
135
n
162
THR
135
B
PRO
136
n
163
PRO
136
B
ILE
137
n
164
ILE
137
B
THR
138
n
165
THR
138
B
TYR
139
n
166
TYR
139
B
PRO
140
n
167
PRO
140
B
GLN
141
n
168
GLN
141
B
GLY
142
n
169
GLY
142
B
LEU
143
n
170
LEU
143
B
ALA
144
n
171
ALA
144
B
MET
145
n
172
MET
145
B
ALA
146
n
173
ALA
146
B
LYS
147
n
174
LYS
147
B
GLU
148
n
175
GLU
148
B
ILE
149
n
176
ILE
149
B
GLY
150
n
177
GLY
150
B
ALA
151
n
178
ALA
151
B
VAL
152
n
179
VAL
152
B
LYS
153
n
180
LYS
153
B
TYR
154
n
181
TYR
154
B
LEU
155
n
182
LEU
155
B
GLU
156
n
183
GLU
156
B
CYS
157
n
184
CYS
157
B
SER
158
n
185
SER
158
B
ALA
159
n
186
ALA
159
B
LEU
160
n
187
LEU
160
B
THR
161
n
188
THR
161
B
GLN
162
n
189
GLN
162
B
ARG
163
n
190
ARG
163
B
GLY
164
n
191
GLY
164
B
LEU
165
n
192
LEU
165
B
LYS
166
n
193
LYS
166
B
THR
167
n
194
THR
167
B
VAL
168
n
195
VAL
168
B
PHE
169
n
196
PHE
169
B
ASP
170
n
197
ASP
170
B
GLU
171
n
198
GLU
171
B
ALA
172
n
199
ALA
172
B
ILE
173
n
200
ILE
173
B
ARG
174
n
201
ARG
174
B
ALA
175
n
202
ALA
175
B
VAL
176
n
203
VAL
176
B
LEU
177
n
204
LEU
177
B
8.6763
1.2895
1.7593
5.6796
-0.0740
8.9141
-0.2774
-0.2464
1.6547
-0.1156
0.1816
0.2893
-0.9330
-0.2306
0.0958
0.2623
0.0258
-0.0463
0.7249
-0.0106
0.5935
refined
-2.6680
-6.6970
-2.2400
X-RAY DIFFRACTION
4.5940
0.9611
0.3057
3.1818
-0.3342
6.0691
0.0760
-0.0933
-0.0102
-0.2231
0.1027
0.0196
0.3048
-0.3128
-0.1787
0.1577
-0.0107
-0.0297
0.8582
0.0461
0.2593
refined
-4.6580
-21.1840
-3.7070
X-RAY DIFFRACTION
9.5918
1.3888
-2.5051
5.6657
-0.7769
7.8487
-0.2911
-0.0883
-1.6185
-0.0718
0.3042
-0.3715
1.3454
0.0227
-0.0131
0.2766
0.0370
0.0592
0.8137
-0.0580
0.6506
refined
5.3570
-40.1460
-27.3570
X-RAY DIFFRACTION
5.3630
-0.0391
-0.1218
6.4646
-0.8359
5.4203
-0.1017
0.0620
0.0129
-0.0093
0.1128
-0.4189
-0.1188
0.4167
-0.0112
0.0385
0.0138
0.0157
0.8921
-0.0602
0.2870
refined
8.3090
-25.6200
-28.2400
X-RAY DIFFRACTION
A
2
A
76
X-RAY DIFFRACTION
1
A
77
A
177
X-RAY DIFFRACTION
2
B
2
B
76
X-RAY DIFFRACTION
3
B
77
B
177
X-RAY DIFFRACTION
4
author_and_software_defined_assembly
PISA
1
monomeric
author_and_software_defined_assembly
PISA
1
monomeric
A
THR
17
A
OG1
THR
44
1_555
A
MG
1002
D
MG
MG
1_555
A
THR
35
A
OG1
THR
62
1_555
82.5
A
THR
17
A
OG1
THR
44
1_555
A
MG
1002
D
MG
MG
1_555
A
HOH
187
G
O
HOH
1_555
91.2
A
THR
35
A
OG1
THR
62
1_555
A
MG
1002
D
MG
MG
1_555
A
HOH
187
G
O
HOH
1_555
83.4
A
THR
17
A
OG1
THR
44
1_555
A
MG
1002
D
MG
MG
1_555
A
HOH
188
G
O
HOH
1_555
87.4
A
THR
35
A
OG1
THR
62
1_555
A
MG
1002
D
MG
MG
1_555
A
HOH
188
G
O
HOH
1_555
97.6
A
HOH
187
G
O
HOH
1_555
A
MG
1002
D
MG
MG
1_555
A
HOH
188
G
O
HOH
1_555
178.2
A
THR
17
A
OG1
THR
44
1_555
A
MG
1002
D
MG
MG
1_555
A
GNP
1001
C
O2G
GNP
1_555
171.8
A
THR
35
A
OG1
THR
62
1_555
A
MG
1002
D
MG
MG
1_555
A
GNP
1001
C
O2G
GNP
1_555
92.6
A
HOH
187
G
O
HOH
1_555
A
MG
1002
D
MG
MG
1_555
A
GNP
1001
C
O2G
GNP
1_555
81.6
A
HOH
188
G
O
HOH
1_555
A
MG
1002
D
MG
MG
1_555
A
GNP
1001
C
O2G
GNP
1_555
99.8
A
THR
17
A
OG1
THR
44
1_555
A
MG
1002
D
MG
MG
1_555
A
GNP
1001
C
O2B
GNP
1_555
97.4
A
THR
35
A
OG1
THR
62
1_555
A
MG
1002
D
MG
MG
1_555
A
GNP
1001
C
O2B
GNP
1_555
168.7
A
HOH
187
G
O
HOH
1_555
A
MG
1002
D
MG
MG
1_555
A
GNP
1001
C
O2B
GNP
1_555
85.3
A
HOH
188
G
O
HOH
1_555
A
MG
1002
D
MG
MG
1_555
A
GNP
1001
C
O2B
GNP
1_555
93.7
A
GNP
1001
C
O2G
GNP
1_555
A
MG
1002
D
MG
MG
1_555
A
GNP
1001
C
O2B
GNP
1_555
86.2
B
THR
17
B
OG1
THR
44
1_555
B
MG
1002
F
MG
MG
1_555
B
THR
35
B
OG1
THR
62
1_555
81.4
B
THR
17
B
OG1
THR
44
1_555
B
MG
1002
F
MG
MG
1_555
B
HOH
184
H
O
HOH
1_555
79.8
B
THR
35
B
OG1
THR
62
1_555
B
MG
1002
F
MG
MG
1_555
B
HOH
184
H
O
HOH
1_555
72.5
B
THR
17
B
OG1
THR
44
1_555
B
MG
1002
F
MG
MG
1_555
B
HOH
186
H
O
HOH
1_555
109.5
B
THR
35
B
OG1
THR
62
1_555
B
MG
1002
F
MG
MG
1_555
B
HOH
186
H
O
HOH
1_555
106.3
B
HOH
184
H
O
HOH
1_555
B
MG
1002
F
MG
MG
1_555
B
HOH
186
H
O
HOH
1_555
170.5
B
THR
17
B
OG1
THR
44
1_555
B
MG
1002
F
MG
MG
1_555
B
GNP
1001
E
O2B
GNP
1_555
95.5
B
THR
35
B
OG1
THR
62
1_555
B
MG
1002
F
MG
MG
1_555
B
GNP
1001
E
O2B
GNP
1_555
152.1
B
HOH
184
H
O
HOH
1_555
B
MG
1002
F
MG
MG
1_555
B
GNP
1001
E
O2B
GNP
1_555
79.7
B
HOH
186
H
O
HOH
1_555
B
MG
1002
F
MG
MG
1_555
B
GNP
1001
E
O2B
GNP
1_555
100.9
B
THR
17
B
OG1
THR
44
1_555
B
MG
1002
F
MG
MG
1_555
B
GNP
1001
E
O2G
GNP
1_555
158.6
B
THR
35
B
OG1
THR
62
1_555
B
MG
1002
F
MG
MG
1_555
B
GNP
1001
E
O2G
GNP
1_555
86.8
B
HOH
184
H
O
HOH
1_555
B
MG
1002
F
MG
MG
1_555
B
GNP
1001
E
O2G
GNP
1_555
79.6
B
HOH
186
H
O
HOH
1_555
B
MG
1002
F
MG
MG
1_555
B
GNP
1001
E
O2G
GNP
1_555
90.9
B
GNP
1001
E
O2B
GNP
1_555
B
MG
1002
F
MG
MG
1_555
B
GNP
1001
E
O2G
GNP
1_555
86.6
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
40
A
N
TYR
67
A
O
LEU
55
A
O
LEU
82
A
O
GLY
54
A
O
GLY
81
A
N
CYS
6
A
N
CYS
33
A
N
VAL
7
A
N
VAL
34
A
O
LEU
79
A
O
LEU
106
A
N
PHE
78
A
N
PHE
105
A
O
ILE
111
A
O
ILE
138
A
N
LEU
112
A
N
LEU
139
A
O
LYS
153
A
O
LYS
180
B
N
TYR
40
B
N
TYR
67
B
O
LEU
55
B
O
LEU
82
B
O
GLY
54
B
O
GLY
81
B
N
ILE
4
B
N
ILE
31
B
N
VAL
9
B
N
VAL
36
B
O
LEU
79
B
O
LEU
106
B
N
ILE
80
B
N
ILE
107
B
O
VAL
113
B
O
VAL
140
B
N
GLY
114
B
N
GLY
141
B
O
LEU
155
B
O
LEU
182
1
A
MET
-26
A
MET
1
1
Y
1
A
GLY
-25
A
GLY
2
1
Y
1
A
SER
-24
A
SER
3
1
Y
1
A
SER
-23
A
SER
4
1
Y
1
A
HIS
-22
A
HIS
5
1
Y
1
A
HIS
-21
A
HIS
6
1
Y
1
A
HIS
-20
A
HIS
7
1
Y
1
A
HIS
-19
A
HIS
8
1
Y
1
A
HIS
-18
A
HIS
9
1
Y
1
A
HIS
-17
A
HIS
10
1
Y
1
A
SER
-16
A
SER
11
1
Y
1
A
SER
-15
A
SER
12
1
Y
1
A
GLY
-14
A
GLY
13
1
Y
1
A
LEU
-13
A
LEU
14
1
Y
1
A
VAL
-12
A
VAL
15
1
Y
1
A
PRO
-11
A
PRO
16
1
Y
1
A
ARG
-10
A
ARG
17
1
Y
1
A
GLY
-9
A
GLY
18
1
Y
1
A
SER
-8
A
SER
19
1
Y
1
A
HIS
-7
A
HIS
20
1
Y
1
A
MET
-6
A
MET
21
1
Y
1
A
GLU
-5
A
GLU
22
1
Y
1
A
ASN
-4
A
ASN
23
1
Y
1
A
LEU
-3
A
LEU
24
1
Y
1
A
TYR
-2
A
TYR
25
1
Y
1
A
PHE
-1
A
PHE
26
1
Y
1
A
GLN
0
A
GLN
27
1
Y
1
A
GLY
1
A
GLY
28
1
Y
1
B
MET
-26
B
MET
1
1
Y
1
B
GLY
-25
B
GLY
2
1
Y
1
B
SER
-24
B
SER
3
1
Y
1
B
SER
-23
B
SER
4
1
Y
1
B
HIS
-22
B
HIS
5
1
Y
1
B
HIS
-21
B
HIS
6
1
Y
1
B
HIS
-20
B
HIS
7
1
Y
1
B
HIS
-19
B
HIS
8
1
Y
1
B
HIS
-18
B
HIS
9
1
Y
1
B
HIS
-17
B
HIS
10
1
Y
1
B
SER
-16
B
SER
11
1
Y
1
B
SER
-15
B
SER
12
1
Y
1
B
GLY
-14
B
GLY
13
1
Y
1
B
LEU
-13
B
LEU
14
1
Y
1
B
VAL
-12
B
VAL
15
1
Y
1
B
PRO
-11
B
PRO
16
1
Y
1
B
ARG
-10
B
ARG
17
1
Y
1
B
GLY
-9
B
GLY
18
1
Y
1
B
SER
-8
B
SER
19
1
Y
1
B
HIS
-7
B
HIS
20
1
Y
1
B
MET
-6
B
MET
21
1
Y
1
B
GLU
-5
B
GLU
22
1
Y
1
B
ASN
-4
B
ASN
23
1
Y
1
B
LEU
-3
B
LEU
24
1
Y
1
B
TYR
-2
B
TYR
25
1
Y
1
B
PHE
-1
B
PHE
26
1
Y
1
B
GLN
0
B
GLN
27
1
Y
1
B
GLY
1
B
GLY
28
1
Y
1
B
GLY
30
B
GLY
57
1
Y
1
B
GLU
31
B
GLU
58
1
Y
1
B
TYR
32
B
TYR
59
1
Y
1
B
ILE
33
B
ILE
60
1
Y
1
B
PRO
34
B
PRO
61
1
Y
1
A
VAL
36
-95.17
-61.68
1
A
PHE
37
-172.20
122.35
1
A
LYS
96
-124.28
-53.32
1
B
ALA
13
86.51
15.22
1
B
PHE
37
-172.42
130.18
1
B
LYS
96
-120.67
-53.47
1
B
ASP
121
-108.55
64.38
1
B
LYS
123
-51.55
-81.26
60.515
1.48
0.00
0.04
-2.34
0.00
0.87
0.937
0.922
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.26398
0.22912
0.23090
2.30
20.00
910
17830
17830
5.1
98.97
21.911
0.250
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.253
0.80
0.80
1.40
PDB ENTRY 3SBD
MAXIMUM LIKELIHOOD
MASK
2.30
20.00
23
2799
66
0
2710
0.007
0.022
2863
1.106
2.008
3915
5.041
5.000
352
39.487
24.397
116
14.714
15.000
482
14.567
15.000
15
0.069
0.200
451
0.005
0.021
2107
0.204
1.500
1744
0.385
2.000
2842
0.500
3.000
1119
0.827
4.500
1069
1
A
1
1311
X-RAY DIFFRACTION
medium positional
0.23
0.50
1
B
1
1311
X-RAY DIFFRACTION
medium thermal
0.12
2.00
0.421
0.333
2.359
63
1259
20
99.10
48.5
2.3
30
3TH5
18366
18169
0
0
0.052
1
23.1
3.5
99.0
2.3
2.38
3.9
1804
0.295
1
3.4
99.3
phasing
PHASER
refinement
REFMAC
5.5.0109
data reduction
HKL-2000
data scaling
HKL-2000
Crystal structure of wild-type RAC1
1
N
N
1
N
N
2
N
N
3
N
N
2
N
N
3
N
N
4
N
N
4
N
N
A
GLY
15
A
GLY
42
HELX_P
A
ASN
26
A
ASN
53
1
1
12
A
GLN
61
A
GLN
88
HELX_P
A
ASP
65
A
ASP
92
5
2
5
A
LEU
67
A
LEU
94
HELX_P
A
TYR
72
A
TYR
99
5
3
6
A
SER
86
A
SER
113
HELX_P
A
LYS
96
A
LYS
123
1
4
11
A
LYS
96
A
LYS
123
HELX_P
A
CYS
105
A
CYS
132
1
5
10
A
LYS
116
A
LYS
143
HELX_P
A
ASP
121
A
ASP
148
5
6
6
A
ASP
122
A
ASP
149
HELX_P
A
GLU
131
A
GLU
158
1
7
10
A
THR
138
A
THR
165
HELX_P
A
ILE
149
A
ILE
176
1
8
12
A
GLY
164
A
GLY
191
HELX_P
A
ALA
175
A
ALA
202
1
9
12
B
GLY
15
B
GLY
42
HELX_P
B
ASN
26
B
ASN
53
1
10
12
B
GLN
61
B
GLN
88
HELX_P
B
ASP
65
B
ASP
92
5
11
5
B
LEU
67
B
LEU
94
HELX_P
B
TYR
72
B
TYR
99
5
12
6
B
SER
86
B
SER
113
HELX_P
B
LYS
96
B
LYS
123
1
13
11
B
LYS
96
B
LYS
123
HELX_P
B
CYS
105
B
CYS
132
1
14
10
B
LYS
116
B
LYS
143
HELX_P
B
ASP
121
B
ASP
148
1
15
6
B
ASP
122
B
ASP
149
HELX_P
B
GLU
131
B
GLU
158
1
16
10
B
THR
138
B
THR
165
HELX_P
B
ILE
149
B
ILE
176
1
17
12
B
GLY
164
B
GLY
191
HELX_P
B
ALA
175
B
ALA
202
1
18
12
metalc
2.116
A
THR
17
A
OG1
THR
44
1_555
A
MG
1002
D
MG
MG
1_555
metalc
1.835
A
THR
35
A
OG1
THR
62
1_555
A
MG
1002
D
MG
MG
1_555
metalc
2.401
A
HOH
187
G
O
HOH
1_555
A
MG
1002
D
MG
MG
1_555
metalc
2.032
A
HOH
188
G
O
HOH
1_555
A
MG
1002
D
MG
MG
1_555
metalc
1.942
A
GNP
1001
C
O2G
GNP
1_555
A
MG
1002
D
MG
MG
1_555
metalc
2.002
A
GNP
1001
C
O2B
GNP
1_555
A
MG
1002
D
MG
MG
1_555
metalc
1.881
B
THR
17
B
OG1
THR
44
1_555
B
MG
1002
F
MG
MG
1_555
metalc
2.231
B
THR
35
B
OG1
THR
62
1_555
B
MG
1002
F
MG
MG
1_555
metalc
2.255
B
HOH
184
H
O
HOH
1_555
B
MG
1002
F
MG
MG
1_555
metalc
1.949
B
HOH
186
H
O
HOH
1_555
B
MG
1002
F
MG
MG
1_555
metalc
1.994
B
GNP
1001
E
O2B
GNP
1_555
B
MG
1002
F
MG
MG
1_555
metalc
2.003
B
GNP
1001
E
O2G
GNP
1_555
B
MG
1002
F
MG
MG
1_555
SIGNALING PROTEIN
Rossmann fold, GTPASE, GTP Binding, PROTEIN BINDING, SIGNALING PROTEIN
A
B
A
GLN
2
A
GLN
29
A
LEU
177
A
LEU
204
4
B
GLN
2
B
GLN
29
B
LEU
177
B
LEU
204
4
RAC1_HUMAN
UNP
1
2
P63000
QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC
FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT
QRGLKTVFDEAIRAVL
2
177
3TH5
2
177
P63000
A
1
29
204
2
177
3TH5
2
177
P63000
B
1
29
204
1
expression tag
MET
-26
3TH5
A
P63000
UNP
1
1
expression tag
GLY
-25
3TH5
A
P63000
UNP
2
1
expression tag
SER
-24
3TH5
A
P63000
UNP
3
1
expression tag
SER
-23
3TH5
A
P63000
UNP
4
1
expression tag
HIS
-22
3TH5
A
P63000
UNP
5
1
expression tag
HIS
-21
3TH5
A
P63000
UNP
6
1
expression tag
HIS
-20
3TH5
A
P63000
UNP
7
1
expression tag
HIS
-19
3TH5
A
P63000
UNP
8
1
expression tag
HIS
-18
3TH5
A
P63000
UNP
9
1
expression tag
HIS
-17
3TH5
A
P63000
UNP
10
1
expression tag
SER
-16
3TH5
A
P63000
UNP
11
1
expression tag
SER
-15
3TH5
A
P63000
UNP
12
1
expression tag
GLY
-14
3TH5
A
P63000
UNP
13
1
expression tag
LEU
-13
3TH5
A
P63000
UNP
14
1
expression tag
VAL
-12
3TH5
A
P63000
UNP
15
1
expression tag
PRO
-11
3TH5
A
P63000
UNP
16
1
expression tag
ARG
-10
3TH5
A
P63000
UNP
17
1
expression tag
GLY
-9
3TH5
A
P63000
UNP
18
1
expression tag
SER
-8
3TH5
A
P63000
UNP
19
1
expression tag
HIS
-7
3TH5
A
P63000
UNP
20
1
expression tag
MET
-6
3TH5
A
P63000
UNP
21
1
expression tag
GLU
-5
3TH5
A
P63000
UNP
22
1
expression tag
ASN
-4
3TH5
A
P63000
UNP
23
1
expression tag
LEU
-3
3TH5
A
P63000
UNP
24
1
expression tag
TYR
-2
3TH5
A
P63000
UNP
25
1
expression tag
PHE
-1
3TH5
A
P63000
UNP
26
1
expression tag
GLN
0
3TH5
A
P63000
UNP
27
1
expression tag
GLY
1
3TH5
A
P63000
UNP
28
2
expression tag
MET
-26
3TH5
B
P63000
UNP
1
2
expression tag
GLY
-25
3TH5
B
P63000
UNP
2
2
expression tag
SER
-24
3TH5
B
P63000
UNP
3
2
expression tag
SER
-23
3TH5
B
P63000
UNP
4
2
expression tag
HIS
-22
3TH5
B
P63000
UNP
5
2
expression tag
HIS
-21
3TH5
B
P63000
UNP
6
2
expression tag
HIS
-20
3TH5
B
P63000
UNP
7
2
expression tag
HIS
-19
3TH5
B
P63000
UNP
8
2
expression tag
HIS
-18
3TH5
B
P63000
UNP
9
2
expression tag
HIS
-17
3TH5
B
P63000
UNP
10
2
expression tag
SER
-16
3TH5
B
P63000
UNP
11
2
expression tag
SER
-15
3TH5
B
P63000
UNP
12
2
expression tag
GLY
-14
3TH5
B
P63000
UNP
13
2
expression tag
LEU
-13
3TH5
B
P63000
UNP
14
2
expression tag
VAL
-12
3TH5
B
P63000
UNP
15
2
expression tag
PRO
-11
3TH5
B
P63000
UNP
16
2
expression tag
ARG
-10
3TH5
B
P63000
UNP
17
2
expression tag
GLY
-9
3TH5
B
P63000
UNP
18
2
expression tag
SER
-8
3TH5
B
P63000
UNP
19
2
expression tag
HIS
-7
3TH5
B
P63000
UNP
20
2
expression tag
MET
-6
3TH5
B
P63000
UNP
21
2
expression tag
GLU
-5
3TH5
B
P63000
UNP
22
2
expression tag
ASN
-4
3TH5
B
P63000
UNP
23
2
expression tag
LEU
-3
3TH5
B
P63000
UNP
24
2
expression tag
TYR
-2
3TH5
B
P63000
UNP
25
2
expression tag
PHE
-1
3TH5
B
P63000
UNP
26
2
expression tag
GLN
0
3TH5
B
P63000
UNP
27
2
expression tag
GLY
1
3TH5
B
P63000
UNP
28
6
6
anti-parallel
parallel
parallel
parallel
parallel
anti-parallel
parallel
parallel
parallel
parallel
A
PHE
37
A
PHE
64
A
VAL
46
A
VAL
73
A
LYS
49
A
LYS
76
A
THR
58
A
THR
85
A
ALA
3
A
ALA
30
A
GLY
10
A
GLY
37
A
VAL
77
A
VAL
104
A
SER
83
A
SER
110
A
ILE
110
A
ILE
137
A
THR
115
A
THR
142
A
LYS
153
A
LYS
180
A
GLU
156
A
GLU
183
B
ASP
38
B
ASP
65
B
VAL
46
B
VAL
73
B
LYS
49
B
LYS
76
B
ASP
57
B
ASP
84
B
ALA
3
B
ALA
30
B
GLY
10
B
GLY
37
B
VAL
77
B
VAL
104
B
SER
83
B
SER
110
B
ILE
110
B
ILE
137
B
THR
115
B
THR
142
B
LYS
153
B
LYS
180
B
GLU
156
B
GLU
183
BINDING SITE FOR RESIDUE GNP A 1001
A
GNP
1001
Software
21
BINDING SITE FOR RESIDUE MG A 1002
A
MG
1002
Software
5
BINDING SITE FOR RESIDUE GNP B 1001
B
GNP
1001
Software
19
BINDING SITE FOR RESIDUE MG B 1002
B
MG
1002
Software
6
A
GLY
12
A
GLY
39
21
1_555
A
ALA
13
A
ALA
40
21
1_555
A
VAL
14
A
VAL
41
21
1_555
A
GLY
15
A
GLY
42
21
1_555
A
LYS
16
A
LYS
43
21
1_555
A
THR
17
A
THR
44
21
1_555
A
CYS
18
A
CYS
45
21
1_555
A
PHE
28
A
PHE
55
21
1_555
A
TYR
32
A
TYR
59
21
1_555
A
THR
35
A
THR
62
21
1_555
A
GLY
60
A
GLY
87
21
1_555
A
LYS
116
A
LYS
143
21
1_555
A
ASP
118
A
ASP
145
21
1_555
A
LEU
119
A
LEU
146
21
1_555
A
SER
158
A
SER
185
21
1_555
A
ALA
159
A
ALA
186
21
1_555
A
LEU
160
A
LEU
187
21
1_555
A
HOH
180
G
HOH
21
1_555
A
HOH
187
G
HOH
21
1_555
A
HOH
188
G
HOH
21
1_555
A
MG
1002
D
MG
21
1_555
A
THR
17
A
THR
44
5
1_555
A
THR
35
A
THR
62
5
1_555
A
HOH
187
G
HOH
5
1_555
A
HOH
188
G
HOH
5
1_555
A
GNP
1001
C
GNP
5
1_555
B
GLY
12
B
GLY
39
19
1_555
B
ALA
13
B
ALA
40
19
1_555
B
VAL
14
B
VAL
41
19
1_555
B
GLY
15
B
GLY
42
19
1_555
B
LYS
16
B
LYS
43
19
1_555
B
THR
17
B
THR
44
19
1_555
B
CYS
18
B
CYS
45
19
1_555
B
PHE
28
B
PHE
55
19
1_555
B
THR
35
B
THR
62
19
1_555
B
GLY
60
B
GLY
87
19
1_555
B
LYS
116
B
LYS
143
19
1_555
B
ASP
118
B
ASP
145
19
1_555
B
LEU
119
B
LEU
146
19
1_555
B
SER
158
B
SER
185
19
1_555
B
ALA
159
B
ALA
186
19
1_555
B
LEU
160
B
LEU
187
19
1_555
B
HOH
184
H
HOH
19
1_555
B
HOH
186
H
HOH
19
1_555
B
MG
1002
F
MG
19
1_555
B
THR
17
B
THR
44
6
1_555
B
THR
35
B
THR
62
6
1_555
B
ASP
57
B
ASP
84
6
1_555
B
HOH
184
H
HOH
6
1_555
B
HOH
186
H
HOH
6
1_555
B
GNP
1001
E
GNP
6
1_555
4
P 1 21 1